CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP015852	Pseudomonas koreensis strain CRS05-R5 chromosome, complete genome	4 crisprs	DEDDh,csa3,DinG,cas3	1	0	5	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP015852_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP015852_1

1423920-1424023

Orphan

Consensus_repeat	Method
TGTAGGAGTGAGCCTGCTCGCGATGGCGGCCT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP015852_1

>merge|NZ_CP015852|1|1423920-1424023|CRISPRCasFinder
TGTAGGAGTGAGCCTGCTCGCGATGGCGGCCTTACAGCCGACCAGTCTCCAGCTGAACGCACCCAACCCAACTGTAGGAGTGAGCCTGCTCGCGATGACGGCCT

>NZ_CP015852|1|1|1423920-1424023|CRISPRCasFinder
TGTAGGAGTGAGCCTGCTCGCGATGGCGGCCT	TACAGCCGACCAGTCTCCAGCTGAACGCACCCAACCCAAC
TGTAGGAGTGAGCCTGCTCGCGATGACGGCCT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP015852.1\|WP_064586362.1\|1431449_1432652_+\|3-oxoadipyl-CoA-thiolase	unknown	unknown	gnl\|CDD\|181624
NZ_CP015852.1\|WP_003222394.1\|1422502_1422844_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP015852.1\|WP_003222384.1\|1408374_1409298_-\|high-affinity-branched-chain-amino-acid-ABC-transporter-permease-LivH	unknown	unknown	gnl\|CDD\|182689
NZ_CP015852.1\|WP_064589963.1\|1414009_1414903_+\|NAD(P)-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|224995
NZ_CP015852.1\|WP_064586356.1\|1417890_1419240_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|340886
NZ_CP015852.1\|WP_003222398.1\|1426218_1426419_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP015852.1\|WP_027614394.1\|1432688_1433393_+\|protocatechuate-3,4-dioxygenase-subunit-beta	unknown	unknown	gnl\|CDD\|239547
NZ_CP015852.1\|WP_041070509.1\|1434154_1435450_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|182433
NZ_CP015852.1\|WP_064586354.1\|1414793_1417076_-\|bifunctional-diguanylate-cyclase/phosphodiesterase	unknown	unknown	gnl\|CDD\|238923
NZ_CP015852.1\|WP_064586359.1\|1427068_1427911_+\|IclR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|131484
NZ_CP015852.1\|WP_003222404.1\|1429813_1430671_+\|CoA-transferase-subunit-A	unknown	unknown	gnl\|CDD\|224702
NZ_CP015852.1\|WP_064586351.1\|1409528_1410656_-\|branched-chain-amino-acid-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|237959
NZ_CP015852.1\|WP_064586363.1\|1433394_1433961_+\|protocatechuate-3,4-dioxygenase-subunit-alpha	unknown	unknown	gnl\|CDD\|239546
NZ_CP015852.1\|WP_064586355.1\|1417221_1417590_-\|YkgJ-family-cysteine-cluster-protein	unknown	unknown	gnl\|CDD\|223799
NZ_CP015852.1\|WP_064586352.1\|1411008_1411314_+\|DUF2288-domain-containing-protein	unknown	unknown	gnl\|CDD\|370797
NZ_CP015852.1\|WP_064586353.1\|1411609_1413808_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP015852.1\|WP_064586361.1\|1430670_1431450_+\|CoA-transferase-subunit-beta	unknown	unknown	gnl\|CDD\|224968
NZ_CP015852.1\|WP_064586357.1\|1419403_1422250_-\|RNA-polymerase-associated-protein-RapA	unknown	unknown	gnl\|CDD\|235319
NZ_CP015852.1\|WP_064586360.1\|1428203_1429550_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|273327
NZ_CP015852.1\|WP_064586358.1\|1424366_1425842_-\|inorganic-phosphate-transporter	unknown	unknown	gnl\|CDD\|223383

Protein	Function_ID	Function_description	E-value
NZ_CP015852.1\|WP_003222384.1\|1408374_1409298_-\|high-affinity-branched-chain-amino-acid-ABC-transporter-permease-LivH	gnl\|CDD\|182689	PRK10740, PRK10740, high-affinity branched-chain amino acid ABC transporter permease LivH.	1.61564e-131
NZ_CP015852.1\|WP_064589963.1\|1414009_1414903_+\|NAD(P)-dependent-oxidoreductase	gnl\|CDD\|224995	COG2084, MmsB, 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism].	1.28646e-92
NZ_CP015852.1\|WP_064586356.1\|1417890_1419240_+\|MFS-transporter	gnl\|CDD\|340886	cd17328, MFS_spinster_like, Protein spinster and spinster homologs of the Major Facilitator Superfamily of transporters. The protein spinster family includes Drosophila protein spinster, its vertebrate homologs, and similar proteins. Humans contain three homologs called protein spinster homologs 1 (SPNS1), 2 (SPNS2), and 3 (SPNS3). Protein spinster and its homologs may be sphingolipid transporters that play central roles in endosomes and/or lysosomes storage. SPNS2 is also called sphingosine 1-phosphate (S1P) transporter and is required for migration of myocardial precursors. S1P is a secreted lipid mediator that plays critical roles in cardiovascular, immunological, and neural development and function. The spinster-like family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	4.8606e-79
NZ_CP015852.1\|WP_064586362.1\|1431449_1432652_+\|3-oxoadipyl-CoA-thiolase	gnl\|CDD\|181624	PRK09050, PRK09050, beta-ketoadipyl CoA thiolase; Validated.	0
NZ_CP015852.1\|WP_027614394.1\|1432688_1433393_+\|protocatechuate-3,4-dioxygenase-subunit-beta	gnl\|CDD\|239547	cd03464, 3,4-PCD_beta, Protocatechuate 3,4-dioxygenase (3,4-PCD) , beta subunit. 3,4-PCD catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-subunit-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.	3.39821e-136
NZ_CP015852.1\|WP_041070509.1\|1434154_1435450_+\|MFS-transporter	gnl\|CDD\|182433	PRK10406, PRK10406, alpha-ketoglutarate transporter; Provisional.	0
NZ_CP015852.1\|WP_064586354.1\|1414793_1417076_-\|bifunctional-diguanylate-cyclase/phosphodiesterase	gnl\|CDD\|238923	cd01948, EAL, EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second messenger, cyclic di-GMP, and is a good candidate for a diguanylate phosphodiesterase function. Together with the GGDEF domain, EAL might be involved in regulating cell surface adhesiveness in bacteria.	7.33463e-106
NZ_CP015852.1\|WP_064586359.1\|1427068_1427911_+\|IclR-family-transcriptional-regulator	gnl\|CDD\|131484	TIGR02431, p-hydroxybenzoate_hydroxylase_transcriptional, beta-ketoadipate pathway transcriptional regulators, PcaR/PcaU/PobR family. Member of this family are IclR-type transcriptional regulators with similar DNA binding sites, able to bind at least three different metabolites related to protocatechuate metabolism. Beta-ketoadipate is the inducer for PcaR, p-hydroxybenzoate for PobR, and protocatechuate for PcaU. [Regulatory functions, DNA interactions].	4.29553e-123
NZ_CP015852.1\|WP_003222404.1\|1429813_1430671_+\|CoA-transferase-subunit-A	gnl\|CDD\|224702	COG1788, AtoD, Acyl CoA:acetate/3-ketoacid CoA transferase, alpha subunit [Lipid metabolism].	6.76571e-82
NZ_CP015852.1\|WP_064586351.1\|1409528_1410656_-\|branched-chain-amino-acid-ABC-transporter-substrate-binding-protein	gnl\|CDD\|237959	PRK15404, PRK15404, high-affinity branched-chain amino acid ABC transporter substrate-binding protein.	0
NZ_CP015852.1\|WP_064586355.1\|1417221_1417590_-\|YkgJ-family-cysteine-cluster-protein	gnl\|CDD\|223799	COG0727, COG0727, Predicted Fe-S-cluster oxidoreductase [General function prediction only].	1.32443e-11
NZ_CP015852.1\|WP_064586352.1\|1411008_1411314_+\|DUF2288-domain-containing-protein	gnl\|CDD\|370797	pfam10052, DUF2288, Protein of unknown function (DUF2288). Members of this family of hypothetical bacterial proteins have no known function.	2.13138e-30
NZ_CP015852.1\|WP_064586363.1\|1433394_1433961_+\|protocatechuate-3,4-dioxygenase-subunit-alpha	gnl\|CDD\|239546	cd03463, 3,4-PCD_alpha, Protocatechuate 3,4-dioxygenase (3,4-PCD) , alpha subunit. 3,4-PCD catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-subunit-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.	1.81864e-94
NZ_CP015852.1\|WP_064586361.1\|1430670_1431450_+\|CoA-transferase-subunit-beta	gnl\|CDD\|224968	COG2057, AtoA, Acyl CoA:acetate/3-ketoacid CoA transferase, beta subunit [Lipid metabolism].	1.90537e-75
NZ_CP015852.1\|WP_064586357.1\|1419403_1422250_-\|RNA-polymerase-associated-protein-RapA	gnl\|CDD\|235319	PRK04914, PRK04914, RNA polymerase-associated protein RapA.	0
NZ_CP015852.1\|WP_064586360.1\|1428203_1429550_+\|MFS-transporter	gnl\|CDD\|273327	TIGR00895, transport_protein, benzoate transport. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids].	2.85341e-160
NZ_CP015852.1\|WP_064586358.1\|1424366_1425842_-\|inorganic-phosphate-transporter	gnl\|CDD\|223383	COG0306, PitA, Phosphate/sulphate permeases [Inorganic ion transport and metabolism].	3.99258e-61

>NZ_CP015852.1|WP_003222394.1|1422502_1422844_+|hypothetical-protein
MLPPMLPLSAVPITSQQDPIRQRPDIPPVVPVQESSNESTIDLQKRDPEEDRLLAREEQRRQQERDRRRREADEDPEEHLAVPGTELNADNTVPVVPLMEDQPRQGLWVDIEI
>NZ_CP015852.1|WP_064586357.1|1419403_1422250_-|RNA-polymerase-associated-protein-RapA
MAQQYQPGQRWISDSEAELGLGTVLAQDGRLLTVLYPATGETRQYALRNAPLTRVRFSPGDTITHFEGWKMTVQQVDDVDGLMVYHGLNGQNEAVTLPETQLSNFIQFRLASDRLFAGQIDPLSWFSLRYNTLEHTSRQLQSSLWGLGGVRAQPIAHQLHIAREVADRIAPRVLLADEVGLGKTIEAGLVIHRQLLSGRANRVLILVPENLQHQWLVEMRRRFNLQVALFDEERFIESDATNPFEDTQLALVALEWLVDDEKAQDALFAAGWDLLVVDEAHHLVWHEEKASPEYSLVEQLAEVIPGVLLLTATPEQLGQDSHFARLRLLDPNRFHDLAAFRAESDNYRPVAEAVQELLDKGRLSPEAHKTIHGFLGNEGEALLTAVNDGDSEASARLVRELLDRHGTGRVLFRNTRAAVQGFPERKLHPYPLPCPDEYLELPLGDHAELYPEVSFQAQPDASEEERWWKFDPRVEWLIDQLKMLKRTKVLVICAHAETAMDLEDALRVRSGIPATVFHEGMNILERDRAAAYFADEEFGAQVLICSEIGSEGRNFQFAHHLVLFDLPSHPDLLEQRIGRLDRIGQKHVIELHVPYLETSPQERLFQWYHEALNAFLNTCPTGNALQHQFGPRLLPLLEEADDSEWQALIDEARTERERLEQELHTGRDRLLELNSGGAGEGDALVEAILEQDDQFALPIYMETLFDAFGIDSEDHSENALILKPSEKMLDASFPLGDDEGVTITYDRNQALSREDMQFITWEHPMVQGGMDLVLSGSMGNTAVALIKNKALKPGTVLLELLYVSEVVAPRSLQLGRYLPPAALRCLLDANGNDLSPRVSFETLNDQLESVPRASANKFIQAQRDQLTPRINAGEDKIAPRHAERVAEARRRLAADTDEELARLTALQAVNPTVRDSELDALRKQREQGLAMLDKAALRLEAIRVLVAG
>NZ_CP015852.1|WP_064586356.1|1417890_1419240_+|MFS-transporter
MQNSTQAANAWRILFLLFLANLFNFFDRTIPAIIIEPIRMEWHLSDFQLGIVGTAFTLVYAIAGLPLGRMADTGSRSKLMGWGLATWSALTAVNGLVGSFWSFLLVRMGIGIGEASYAPAANSLIGDLFPAHRRARAMGIFMLGLPLGLLLAFFTIGAMVKAFDSWRAPFFIAAVPGLILAVFMFFIKEPKRGAAETVQVSQEKVDKPIRRVLAVPTFLWLVMAGLCFNFATYACNSFMVPMLQRYFLMPLHDAAVATGVIVGITGLIGLTLGGWIADKIHQRVANGRLLFAAFSLIISAVCTAWALHAGRVEIGVFVALFSVGWLFAYNFYTCVYTAIQDVVEPRLRATAMALFFAGLYLLGGGLGPVVVGGLSDHFAQSAMLSAGAEQMTEAFKAVGLHDAMYLIPVALFLTMVFLFLAARCFVRDAQRMKEGLVAVVEPDVAVATA
>NZ_CP015852.1|WP_064586355.1|1417221_1417590_-|YkgJ-family-cysteine-cluster-protein
MSEVSPCLNCGACCSHFRVSFFWGECASSGGTVPDELVTQITPSRVAMNGTDCKSPRCTALVGEVGNTVQCSIYEQRSSPCREFEASWENGEQNVDCDAARARFGLPPLDPEWNQIHYDRSA
>NZ_CP015852.1|WP_064586354.1|1414793_1417076_-|bifunctional-diguanylate-cyclase/phosphodiesterase
MEWLGLQFVTELPDSGQVILDCTHNPLLVLVAYLVACAASFATLDMAERVAHAEDLGSQRMWRWIGATCLAGGIWAMHFIAMLAFQAPIEIHYDLAITLFSLLIALLAAWLAMHTLSHPQTSLVHYLKTAIVIGLGIAGMHYVGMAALHSVATAYYQPLLFCLSIMIAIGASFTALWVAGYLREGSGRFHQLLKYTAAMILGAGIISMHFTAMAALHLVLPEGTAPTLSGETNHLQLGLTVALIILLILGSAISAALADKKLQSKEHDLRRVNALLSQLDQARMSLQQVANYDALTNLINRRGFNQIFAEKLSQKTSEGGMLAVMFLDIDHFKRINDSLGHDAGDALLKVIANHIKNSVRSHDDVVARFGGDEFCILIGLRDREEARSMAQRIMLKMKEPIELAGRRMVMTTSIGISLFPDDGTTCEELLKHADLALYQSKGAGRNGLHFFSSNMKTRASLELQLEEELRQALREEHGLTLYYQPIFELKTGRVTKLEALIRWQHPVHGLLAPDRFIAIAETNGLIAELDNWVLRRACADLGELTRHGCEELKIAWNCSPLNLAREELADEIESALRSAGVAPERLELEVTENALMGNIANTLVLLRQIRALGVSLSIDDFGTGYSSLAYLKRLPLNTLKIDRSFILDIPTATADMEIVQAIIVMAHTLHLQVVTEGVESLEQYEFLERSGCDYIQGYLLSRPVPLDELRPVLEEINQRKHSHAVNPLILARGTFEPVSLDPAAKSLAPHAGASVVRPIR
>NZ_CP015852.1|WP_064589963.1|1414009_1414903_+|NAD(P)-dependent-oxidoreductase
MSTLPSLGFAGIGLMGLPMCRRLLATGYPLTVWNRNPAKCAPLVKAGARQVATPAELCEHADVVMLCLADTAVVREVVFGAGGVAEGAKEGQLLVDFSSLEPTATREMAAALADQTGMRWLDSPVSGGVVGAEAGSLAIMVGGTAADLDRVRPLLLNLGQRVTHMGGIGAGQVTKACNQMIVACNALVIAEVVALAEQAGVDAGLIAEALAGGFADSKPLQILAPQMAESRFEPVKWHVRTLLKDLDTAVKFSREQGSATPISGLAAQLMRLHGAQGFLQQDPATLVQMYRAPESAD
>NZ_CP015852.1|WP_064586353.1|1411609_1413808_-|hypothetical-protein
MTSKNNPATAVSDLTLSPAANSPAPMKPLPPSRPLGTHQYLYYTETNTDRILDNLDGLRDLVFPRPPHLEGDNEQHNDQEFPSVCLIGLGRCGSNIALDVAELVYNARKFYLNEFNNEDRAADRRLADKGYSPAQWIKHNLRIGPNKSTKPVFLVEPLVMLGDLDKDIAGRIRFSRKGEKSGFLRDYSKMKIMDLSEVHAGGAGNAPILGQYLAKIILNKDTQRFSSPDWKMIHSYLIDSCGIKANQSRLYFSIFSAGGGTGSGMASEFGLAQQHSYMNKTFDTKPMDEHDGKSGHSFVFEPIFTSGICVLPNISDHRSEMSEALHINAGRLLCKYLSEEWDFSYNFANEDSSEASVMGRIRPWNAMMLISNDIMRYAEESDDGNIQNIDVNAMEKHANQYISQQIFNILTAQAVTTDYDQNYFRRAGIDIGETIRLDANDLFMSLAGPVAIAYAESVVPETPPPSSDKFKVFDKEPQRLNIDDLFFRSIDLPHFNKVTQAIEGISLLPIESKRYRASLEQYKNSGYDAAALHDLHFFKNCSSVVSIVSLPKDYKLSYMDLNRLKTHLNSLFPNTTLKRYALVIGASANLSLTTLIAKSPCLSDDFLTLIVAFIKRCFAKTPYRFDETLDNSILDFIINEDFDEDRIDDLLNEFENPAKILDTNWYAIKPMYEKKYRELINDKDKFVSINDIRLSRDCVKKSIKYLREIYRHRIGKTKVISLNNHTGKTYSV
>NZ_CP015852.1|WP_064586352.1|1411008_1411314_+|DUF2288-domain-containing-protein
MNQEPSTLYAKLLGETASITWKELEPFFAKGALLWVDPALDLIAAAEAVASDDGEKVAAWLAEDKVAKLSETRALDIFERDPALWAVVVSPWILIQERASA
>NZ_CP015852.1|WP_064586351.1|1409528_1410656_-|branched-chain-amino-acid-ABC-transporter-substrate-binding-protein
MTKATKQISKLFAAMVLAGVASHSFAADTIKIGIAGPKTGPVAQYGDMQFSGAKMAIEQINAKGGVDGKKLEAVEYDDACDPKQAVAVANKVVNDGVKFVVGHLCSSSTQPASDIYEDEGVIMITPAATSPDITARGYKMVFRTIGLDSAQGPAAGNYIADHVKPKIVAVLHDKQQYGEGIATAVKATLEKKGVKVAVFEGVNAGDKDFSSMIAKLKQANVDFVYYGGYHPELGLILRQSQEKGLKAKFMGPEGVGNDSISQIAKDASEGLLVTLPKSFDQDPANVALADAFKAKKEDPSGPFVFPSYSAVEVIAGGITAAKSEDPAKVAEAIHAGTFKTPTGDLSFDAKGDLKDFKFVVYEWHFGKPKTEVSPQ
>NZ_CP015852.1|WP_003222384.1|1408374_1409298_-|high-affinity-branched-chain-amino-acid-ABC-transporter-permease-LivH
MPDIYHFFQQLVNGLTIGSTYALIAIGYTMVYGIIGMINFAHGEVYMIGSYVAFIAIAGLAMMGIDNVPLLMTAAFIASIVVTSSYGYSIERIAYRPLRGSNRLIPLISAIGMSIFLQNTVLLAQDSKDKSIPNLIPGNISIGPGGAHEVLISYMQIVVFVVTLVAMLGLTLFISRSRLGRACRACAEDIKMANLLGINTNNIIALTFVIGAALAAVAAVLLSMQYGVINPNAGFLVGLKAFTAAVLGGIGSIPGAMLGGLVLGVAEAFGADIFGDQYKDVVAFGLLVLVLLFRPTGILGRPEVEKV
>NZ_CP015852.1|WP_064586358.1|1424366_1425842_-|inorganic-phosphate-transporter
MIDLFSGLDAWVLVSLLLALTFVLAFEFINGFHDTANAVATVIYTKAMPPHLAVFFSGVFNFLGVLLGGVGVAYAIVHLLPVELLINVNTGHGLAMVFSLLAAAIAWNLGTWYFGIPASSSHTLIGSILGVGLANALINDIPLGDGVNWQKAIDIGASLVFSPMAGFLVAALVLIGLKWWRPLSKMHKTPEQRRKIDDKKHPPFWNRLVLVMSAMAMSFVHGSNDGQKGIGLIMLVLIGIVPAQFVLDLNSTTYQIERTRDATLHLSQFYQRNSATLGEFLALGKSVEGDLPEKFRCNPQQTEPTISALLHTLKGVSDYHSLPAESRIEVRRYLLCLDDTAKKVAKLPGVEAREKADLDKLRKDLTTTTEYAPFWVILAVALALGLGTMIGWKRVVLTIGEKIGKQGMTYAQGMSAQITAASMIGLANIFSLPVSTTHVLSSGVAGTMVANKSGLQGGTVRTILLAWVLTLPATVALSAGLFWLASKALGS
>NZ_CP015852.1|WP_003222398.1|1426218_1426419_-|hypothetical-protein
MTKDELRAELERQEQRYKEVYGGEVTTYAAQPEPERKAWRKRPTVQDQVFQQELKKMEEELKTEEP
>NZ_CP015852.1|WP_064586359.1|1427068_1427911_+|IclR-family-transcriptional-regulator
MNDQMRNSFTSVAPPIVASPAKRIQALTGDPDFMTSLARGLAVVQAFQERKRHLTIAQISHRTEIPRAAVRRCLHTLIKLGYATTDGRTYSLLPKVLTLGHAYLSSTPLAVSAQPYLDRMSEQLHEACNMATLEGDDILYIARSATTQRLISVDLSVGGRLPAYCTSMGRILLAALDDTSLGEYLDHAELVAKTSRTLHTPQALLECLQEVRQQGWCIVDQELEQGLRSIAVPVYDASGQVVAALNVSTHAGRVSRTELEQRFLPGLLSASRDLSAQLFA
>NZ_CP015852.1|WP_064586360.1|1428203_1429550_+|MFS-transporter
MNQPQSAVGNCLDVQTFINAQPISRYQWRVVILCFLIVFLDGLDTAAMGFIAPALSQDWGIDRASLGPVMSAALIGMVFGALGSGPLADRFGRKVVLVGAVLLFGAFSLASAYSTNVEQLLVLRFLTGLGLGAGMPNATTLLSEYTPERKKSLLVTSMFCGFNLGMAGGGFISAKLIPAFGWHSLLLIGGILPLILAVVLLFWLPESARYLVVRNRGTDKVRQTLSPIDPVAVAQASSFSVPEQKTVKARNVFAVIFSGTYSAGTLLLWLTYFMGLVIVYLLTSWLPTLMRDSGASMEQAAFIGALFQFGGVLSAVAVGWAMDRFNPHKVIGTFYLLAGVFAYAVGQSLGNITLLATLVLVAGMCVNGAQSAMPSLAARFYPTQGRATGVSWMLGIGRFGAILGAWMGATLLGLGWNFEQVLTALVIPAALATTAVVIKGMVSHADAT
>NZ_CP015852.1|WP_003222404.1|1429813_1430671_+|CoA-transferase-subunit-A
MAEILSLHDAVKQFVNDGDTVALEGFTHLIPTAAGHEIIRQGKKDLTLVRMTPDLIYDQLIGAGCARKLIFSWGGNPGVGSLHRLRDAVEKQWPHALEIEEHSHADLANAYVAGASGLPFAVLRAYAGSDLPKVNPLIKSVTCPFTGEVLAAVPSVRPDVTVIHAQKADRQGNVLLWGILGVQKEAALAAKRCIVTVEEIVDNLNAPMNACVLPTWALSAVCHVPGGAHPSYAHGYTERDNRFYQAWDPIARDRETFTAWINEYIHGCADFSEFQAKLAAASEAK
>NZ_CP015852.1|WP_064586361.1|1430670_1431450_+|CoA-transferase-subunit-beta
MTYTTNEMMTVAAARRLKNGSVCFVGIGLPSKAANLARLTSSPDVVLIYESGPIGAKPSVLPLSIGDGELAETADTVVPTGEIFRYWLQGGRIDVGFLGAAQVDRFGNINTTVVGDYHAPKVRLPGAGGAPEIAGSAKSVLIILKQSARSFVDKLDFITSVGHGEGGDSRKRLGLPGAGPVGIITDLCIMEPEADTHEFVVTALHPGVTREQVIAATGWAIRFADTVETTAAPTAVELTALRDLEARTAAAHGQAPGEA
>NZ_CP015852.1|WP_064586362.1|1431449_1432652_+|3-oxoadipyl-CoA-thiolase
MRDVYICDAIRTPIGRFGGGLSAVRADDLAAVPIKALMERNPSVDWNAIDEVFLGCANQAGEDNRNVARMALLLAGLPETVPGVTLNRLCASGMDAIGTAFRAIASGEMELAIAGGVESMSRAPFVMGKADAAFSRNMKLEDTTIGWRFINPLMKAQYGVDAMPQTADNVADDYKVSRADQDAFALRSQQRTAAAQAAGYFAEEIVEVRIAHKKGETVVSQDEHPRADTTIEALSKLKPVNGADKTVTAGNASGVNDGAAALILASAEAVKKHGLTARAKVLGMASAGVAPRVMGIGPVPAVRKLIERLGVAVSDFDVIELNEAFASQGLAVLRELGLADDAAQVNPNGGAIALGHPLGMSGARLVLTALHQLEKTGGKKGLATMCVGVGQGLALAIERV
>NZ_CP015852.1|WP_027614394.1|1432688_1433393_+|protocatechuate-3,4-dioxygenase-subunit-beta
MTDKPGYRRPQEGTQPEYLHPTYQSTNLRSPSKPLVFLPHSLSEITGPTIGAERVAEKDNDLTAQHDGEPLGERIIIHGRVLDENGLPVPGILVEIWQANAAGRYNHKRDLHDAPLDPNFTGTGRTVTDADGWYQFQTIKPGAYPWGNHHNAWRPAHIHFSLFGPSILTRLVTQMYFPGDPLLAYDPIYNCVPDTSAKERLIAAFDLEKTIPSYALGYRWDIVLRGRDATPMEK
>NZ_CP015852.1|WP_064586363.1|1433394_1433961_+|protocatechuate-3,4-dioxygenase-subunit-alpha
MTLTATTSHTVGPYYHIGLTWLNRENLAVEQTLGERVAITGQVVDGNGDVVNDAMLEVWQANAAGKYAHPEDEQDKPLDPHFEGFGRVPVDAEGRFRFTTIKPGTVEGLKGSTQAPHLVVLVFARGLVKHLLTRIYFEGEPANVNDPLLECVPAERRGTLLAKPDAAGVYQWNVILQGTDAETVFFDY
>NZ_CP015852.1|WP_041070509.1|1434154_1435450_+|MFS-transporter
MTTTTAHYTGEERSKRIFAIVGASSGNLVEWFDFYVYAFCAIYFAPAFFPSDNPTVQLVNTAGVFAAGFLMRPIGGWIFGRLADKKGRKTSMMISVLMMCFGSLLIACLPTYASIGVWAPLLLLFARLLQGLSVGGEYGTTATYMSEVALKGQRGFFASFQYVTLIGGQLLAVSLVVILQQFLSEDELRAYGWRIPFVVGAVAAVISLFLRRSLKETTSKEMRENKDAGSIRALFRDHKAAFITVLGYTAGGSLIFYTFTTYMQKYLVNTAGMHAKTASYIMTGALFLYMCMQPLFGMLADKIGRRNSMLWFGALGTLFTVPILLSLKSISSPILAFVLITVALAIVSFYTSISGLVKAEMFPPEVRALGVGLAYAVANAIFGGSAEYVALSLKAGGMENAFYWYVTVMMAVAFLFSLRLPKQAAYLHHDL

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Crispr_ID: NZ_CP015852_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP015852_2

2040161-2040256

Orphan

Consensus_repeat	Method
GCTGGCTTGCCAGTGATGGCGGCC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP015852_2

>merge|NZ_CP015852|2|2040161-2040256|CRISPRCasFinder
GCTGGCTTGCCAGTGATGGCGGCCTGACAGCCGACCAATCCCCAACTGAATACACTCAGTCAAATTGTGGGAGCTGGCTTGCCAGCGATGGCGGCC

>NZ_CP015852|2|2|2040161-2040256|CRISPRCasFinder
GCTGGCTTGCCAGTGATGGCGGCC	TGACAGCCGACCAATCCCCAACTGAATACACTCAGTCAAATTGTGGGA
GCTGGCTTGCCAGCGATGGCGGCC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP015852.1\|WP_064586802.1\|2037600_2039025_-\|cytochrome-c-oxidase,-cbb3-type-subunit-I	unknown	unknown	gnl\|CDD\|237726
NZ_CP015852.1\|WP_064116879.1\|2033298_2033907_-\|cytochrome-c-oxidase,-cbb3-type-subunit-II	unknown	unknown	gnl\|CDD\|237725
NZ_CP015852.1\|WP_064586811.1\|2049753_2050926_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|340863
NZ_CP015852.1\|WP_157772043.1\|2040467_2040674_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP015852.1\|WP_064586797.1\|2031066_2032071_+\|phosphoesterase	unknown	unknown	gnl\|CDD\|227842
NZ_CP015852.1\|WP_064586805.1\|2042670_2043462_-\|CPBP-family-intramembrane-metalloprotease	unknown	unknown	gnl\|CDD\|376806
NZ_CP015852.1\|WP_003175465.1\|2033106_2033292_-\|CcoQ/FixQ-family-Cbb3-type-cytochrome-c-oxidase-assembly-chaperone	unknown	unknown	gnl\|CDD\|238647
NZ_CP015852.1\|WP_064586800.1\|2035830_2036784_-\|cytochrome-c-oxidase,-cbb3-type-subunit-III	unknown	unknown	gnl\|CDD\|129864
NZ_CP015852.1\|WP_064586809.1\|2046890_2048717_-\|glycoside-hydrolase-family-15-protein	unknown	unknown	gnl\|CDD\|225922
NZ_CP015852.1\|WP_064586803.1\|2039111_2039789_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226101
NZ_CP015852.1\|WP_003223389.1\|2036981_2037590_-\|cytochrome-c-oxidase,-cbb3-type-subunit-II	unknown	unknown	gnl\|CDD\|237725
NZ_CP015852.1\|WP_064586810.1\|2048709_2049510_-\|glucose-1-dehydrogenase	unknown	unknown	gnl\|CDD\|187616
NZ_CP015852.1\|WP_064586804.1\|2041002_2042568_-\|methyl-accepting-chemotaxis-protein	unknown	unknown	gnl\|CDD\|223910
NZ_CP015852.1\|WP_064586807.1\|2044468_2045455_+\|GlxA-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|227311
NZ_CP015852.1\|WP_064586806.1\|2043692_2044379_-\|DJ-1/PfpI-family-protein	unknown	unknown	gnl\|CDD\|153233
NZ_CP015852.1\|WP_064586801.1\|2036780_2036978_-\|cbb3-type-cytochrome-c-oxidase-subunit-3	unknown	unknown	gnl\|CDD\|368492
NZ_CP015852.1\|WP_064586808.1\|2046109_2046499_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP015852.1\|WP_064586799.1\|2033906_2035349_-\|cytochrome-c-oxidase,-cbb3-type-subunit-I	unknown	unknown	gnl\|CDD\|237726
NZ_CP015852.1\|WP_064586798.1\|2032126_2033110_-\|cytochrome-c-oxidase,-cbb3-type-subunit-III	unknown	unknown	gnl\|CDD\|129864
NZ_CP015852.1\|WP_082920296.1\|2051004_2051739_+\|thioesterase	unknown	unknown	gnl\|CDD\|225749

Protein	Function_ID	Function_description	E-value
NZ_CP015852.1\|WP_064586802.1\|2037600_2039025_-\|cytochrome-c-oxidase,-cbb3-type-subunit-I	gnl\|CDD\|237726	PRK14488, PRK14488, cbb3-type cytochrome c oxidase subunit I; Provisional.	0
NZ_CP015852.1\|WP_064116879.1\|2033298_2033907_-\|cytochrome-c-oxidase,-cbb3-type-subunit-II	gnl\|CDD\|237725	PRK14487, PRK14487, cbb3-type cytochrome c oxidase subunit II; Provisional.	8.97016e-151
NZ_CP015852.1\|WP_003223389.1\|2036981_2037590_-\|cytochrome-c-oxidase,-cbb3-type-subunit-II	gnl\|CDD\|237725	PRK14487, PRK14487, cbb3-type cytochrome c oxidase subunit II; Provisional.	1.24063e-148
NZ_CP015852.1\|WP_064586797.1\|2031066_2032071_+\|phosphoesterase	gnl\|CDD\|227842	COG5555, COG5555, Cytolysin, a secreted calcineurin-like phosphatase [Cell motility and secretion].	2.69426e-08
NZ_CP015852.1\|WP_064586805.1\|2042670_2043462_-\|CPBP-family-intramembrane-metalloprotease	gnl\|CDD\|376806	pfam02517, Abi, CAAX protease self-immunity. Members of this family are probably proteases (after a isoprenyl group is attached to the Cys residue in the C-terminal CAAX motif of a protein to attach it to the membrane, the AAX tripeptide being removed by one of the CAAX prenyl proteases). The family contains the CAAX prenyl protease. The proteins contain a highly conserved Glu-Glu motif at the amino end of the alignment. The alignment also contains two histidine residues that may be involved in zinc binding. While they are involved in membrane anchoring of proteins in eukaryotes, little is known about their function in prokaryotes. In some known bacteriocin loci, Abi genes have been found downstream of bacteriocin structural genes where they are probably involved in self-immunity. Investigation of the bacteriocin-like loci in the Gram positive bacteria locus from Lactobacillus sakei 23K confirmed that the bacteriocin-like genes (sak23Kalphabeta) exhibited antimicrobial activity when expressed in a heterologous host and that the associated Abi gene (sak23Ki) conferred immunity against the cognate bacteriocin. Interestingly, the immunity genes from three similar systems conferred a high degree of cross-immunity against each other's bacteriocins, suggesting the recognition of a common receptor. Site-directed mutagenesis demonstrated that the conserved motifs constituting the putative proteolytic active site of the Abi proteins are essential for the immunity function of Sak23Ki - thus a new concept in self-immunity.	2.78144e-09
NZ_CP015852.1\|WP_003175465.1\|2033106_2033292_-\|CcoQ/FixQ-family-Cbb3-type-cytochrome-c-oxidase-assembly-chaperone	gnl\|CDD\|238647	cd01324, cbb3_Oxidase_CcoQ, Cytochrome cbb oxidase CcoQ. Cytochrome cbb3 oxidase, the terminal oxidase in the respiratory chains of proteobacteria, is a multi-chain transmembrane protein located in the cell membrane. Like other cytochrome oxidases, it catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. Found exclusively in proteobacteria, cbb3 is believed to be a modern enzyme that has evolved independently to perform a specialized function in microaerobic energy metabolism. The cbb3 operon contains four genes (ccoNOQP or fixNOQP), with ccoN coding for subunit I. Instead of a CuA-containing subunit II analogous to other cytochrome oxidases, cbb3 utilizes subunits ccoO and ccoP, which contain one and two hemes, respectively, to transfer electrons to the binuclear center. ccoQ, the fourth subunit, is a single transmembrane helix protein. It has been shown to protect the core complex from proteolytic degradation by serine proteases. See cd00919, cd01322, or cd01323 for more information on cbb3 oxidase.	4.34584e-09
NZ_CP015852.1\|WP_064586800.1\|2035830_2036784_-\|cytochrome-c-oxidase,-cbb3-type-subunit-III	gnl\|CDD\|129864	TIGR00782, di-heme_cytochrome_cp, cytochrome c oxidase, cbb3-type, subunit III. This model describes a di-heme subunit of approximately 26 kDa of the cbb3 type copper and heme-containing cytochrome oxidase. [Energy metabolism, Electron transport].	4.42582e-85
NZ_CP015852.1\|WP_064586809.1\|2046890_2048717_-\|glycoside-hydrolase-family-15-protein	gnl\|CDD\|225922	COG3387, SGA1, Glucoamylase and related glycosyl hydrolases [Carbohydrate transport and metabolism].	2.11395e-112
NZ_CP015852.1\|WP_064586803.1\|2039111_2039789_+\|hypothetical-protein	gnl\|CDD\|226101	COG3571, COG3571, Predicted hydrolase of the alpha/beta-hydrolase fold [General function prediction only].	9.70436e-82
NZ_CP015852.1\|WP_064586804.1\|2041002_2042568_-\|methyl-accepting-chemotaxis-protein	gnl\|CDD\|223910	COG0840, Tar, Methyl-accepting chemotaxis protein [Cell motility and secretion / Signal transduction mechanisms].	9.24228e-71
NZ_CP015852.1\|WP_064586810.1\|2048709_2049510_-\|glucose-1-dehydrogenase	gnl\|CDD\|187616	cd05358, GlcDH_SDR_c, glucose 1 dehydrogenase (GlcDH), classical (c) SDRs. GlcDH, is a tetrameric member of the SDR family, it catalyzes the NAD(P)-dependent oxidation of beta-D-glucose to D-glucono-delta-lactone. GlcDH has a typical NAD-binding site glycine-rich pattern as well as the canonical active site tetrad (YXXXK motif plus upstream Ser and Asn). SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs.	5.28161e-130
NZ_CP015852.1\|WP_064586811.1\|2049753_2050926_+\|MFS-transporter	gnl\|CDD\|340863	cd06173, MFS_MefA_like, Macrolide efflux protein A and similar proteins of the Major Facilitator Superfamily of transporters. This family is composed of Streptococcus pyogenes macrolide efflux protein A (MefA) and similar transporters, many of which remain uncharacterized. Some members may be multidrug resistance (MDR) transporters, which are drug/H+ antiporters (DHAs) that mediate the efflux of a variety of drugs and toxic compounds, conferring resistance to these compounds. MefA confers resistance to 14-membered macrolides including erythromycin and to 15-membered macrolides. It functions as an efflux pump to regulate intracellular macrolide levels. The MefA-like family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	4.69502e-17
NZ_CP015852.1\|WP_064586807.1\|2044468_2045455_+\|GlxA-family-transcriptional-regulator	gnl\|CDD\|227311	COG4977, COG4977, Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain [Transcription].	7.99056e-89
NZ_CP015852.1\|WP_064586806.1\|2043692_2044379_-\|DJ-1/PfpI-family-protein	gnl\|CDD\|153233	cd03139, GATase1_PfpI_2, Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.	6.06012e-86
NZ_CP015852.1\|WP_064586801.1\|2036780_2036978_-\|cbb3-type-cytochrome-c-oxidase-subunit-3	gnl\|CDD\|368492	pfam05545, FixQ, Cbb3-type cytochrome oxidase component FixQ. This family consists of several Cbb3-type cytochrome oxidase components (FixQ/CcoQ). FixQ is found in nitrogen fixing bacteria. Since nitrogen fixation is an energy-consuming process, effective symbioses depend on operation of a respiratory chain with a high affinity for O2, closely coupled to ATP production. This requirement is fulfilled by a special three-subunit terminal oxidase (cytochrome terminal oxidase cbb3), which was first identified in Bradyrhizobium japonicum as the product of the fixNOQP operon.	3.13129e-07
NZ_CP015852.1\|WP_064586799.1\|2033906_2035349_-\|cytochrome-c-oxidase,-cbb3-type-subunit-I	gnl\|CDD\|237726	PRK14488, PRK14488, cbb3-type cytochrome c oxidase subunit I; Provisional.	0
NZ_CP015852.1\|WP_064586798.1\|2032126_2033110_-\|cytochrome-c-oxidase,-cbb3-type-subunit-III	gnl\|CDD\|129864	TIGR00782, di-heme_cytochrome_cp, cytochrome c oxidase, cbb3-type, subunit III. This model describes a di-heme subunit of approximately 26 kDa of the cbb3 type copper and heme-containing cytochrome oxidase. [Energy metabolism, Electron transport].	1.94405e-82
NZ_CP015852.1\|WP_082920296.1\|2051004_2051739_+\|thioesterase	gnl\|CDD\|225749	COG3208, GrsT, Predicted thioesterase involved in non-ribosomal peptide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism].	3.215e-81

>NZ_CP015852.1|WP_064586803.1|2039111_2039789_+|hypothetical-protein
MDKQHKASIDGDQWAQCVRDRGWLWDGASGEASATLILAHGAGAPMDSEWMMDMAGRLAALGVNVLRFEFPYMAQRRIDGSKRPPNPAPKLLECWREVFAEVRRHVAGTLAVGGKSMGGRMASLLADELGADALVCLGYPFYAVGKPEKPRVEHLAGLKTRTLIVQGERDALGNRDAVEAYDLSPSIEVFWLASGDHDLKPLKVSGFSHSDHLASAAQKVASFFR
>NZ_CP015852.1|WP_064586802.1|2037600_2039025_-|cytochrome-c-oxidase,-cbb3-type-subunit-I
MNTSISTAYNYKVVRQFAIMTVVWGIVGMGLGVFLAAQLVWPELNFNLPWTSFGRLRPLHTNAVIFAFGGCALFASSFYSVQRTCQTQLFAPKIAAFCFWGWQLVILLAAISLPLGYTSSKEYAELEWPIDILITIVWVAYAIVFFGTIMQRKTKHIYVGNWFFGAFIITVAILHIVNNLELPVSLTKSYSVYAGATDAMVQWWYGHNAVGFFLTAGFLGMMYYFVPKQAERPVYSYRLSIVHFWALITLYIWAGPHHLHYTALPDWAQSLGMVMSLILLAPSWGGMINGMMTLSGAWHKLRSDPILRFLVVSLAFYGMSTFEGPMMAIKTVNALSHYTDWTIGHVHAGALGWVAMISIGALYHMIPKVFGKEQMHSVGLINAHFWLATIGTVLYIASMWVNGIAQGLMWRAVNEDGTLTYSFVETLVASHPGFVVRLVGGAIFLSGMFLMAYNTWRTVQASQPADVVAAAQMA
>NZ_CP015852.1|WP_003223389.1|2036981_2037590_-|cytochrome-c-oxidase,-cbb3-type-subunit-II
MKHETIEKNVGLLMLLMVFAVSIGGLTQIVPLFFQDVTNKPVEGMKPYTALQLEGRDIYIREGCVGCHSQMIRPFRAETERYGHYSVAGESVWDHPFLWGSKRTGPDLARVGARYSDDWHRAHLYNPRNVVPESKMPAYPWLVTQAVDSSHTETKLKTMRTLGVPYTDDDISGAVASLKGKTEMDALVSYLQVLGTAIKSKR
>NZ_CP015852.1|WP_064586801.1|2036780_2036978_-|cbb3-type-cytochrome-c-oxidase-subunit-3
MVIDMSAGLIRGLGTVVVFVAFVGLTLWVFNRKRTPEFAEARLLPFADEPQPDTTQASEPRSTRP
>NZ_CP015852.1|WP_064586800.1|2035830_2036784_-|cytochrome-c-oxidase,-cbb3-type-subunit-III
MTTFWSTWICVLTIGSLIGLTWLLIGTRRGETKGSVDQTMGHSFDGIEEYDNPLPQWWFMLFAGTLVFSVGYLILYPGLGNWKGVLPGYEDGWTGVHEWEKEMNKADAKFGPIFAKFAAMPVEEVAKDPQALKMGGRLFASNCSVCHGSDAKGAFGFPNLADSDWRWGGDANTIKTTIMGGRMAAMPAWGEVLGEAGVKNVAAYVRHELAGLPLPADSKADLQAGQQAFSTTCVACHGATGHGTEAMGAPNLTHPAGFIYGTSLTQLEQTIRHGRQGHMPAQSELLGNDKVQLLAAYVYSLSHGLNTEKLITEDNKQ
>NZ_CP015852.1|WP_064586799.1|2033906_2035349_-|cytochrome-c-oxidase,-cbb3-type-subunit-I
MSTAISPTAYNYKVVRQFAIMTVVWGILGMGLGVFIASQLVWPELNFGLPWTSFGRLRPLHTNLVIFAFGGCALFATSYYVVQRTCQTRLISDSLAAFTFWGWQAVIVGAIITLPLGYTTTKEYAELEWPLAILLAIVWISYGLVFFGTITKRKTKHIYVGNWFYGAFIVVTAMLHIVNHASLPVSFFKSYSAYSGATDAMIQWWYGHNAVGFFLTTGFLGMMYYFVPKQAERPIYSYRLSIVHFWALITLYIWAGPHHLHYTALPDWAQSLGMAMSIILLAPSWGGMINGMMTLSGAWHKLRTDPILRFLVVSLAFYGMSTFEGPMMAIKTVNSLSHYTDWTIGHVHAGALGWVAMISIGAIYHMIPKLFGRAQMHSTGLINAHFWLATIGTVLYIASMWVNGITQGLMWRAINDDGTLTYSFVEALQASHPGYIVRALGGAFFASGMLLMAYNVWRTVRASNPAEAEAAAQIAVVGAH
>NZ_CP015852.1|WP_064116879.1|2033298_2033907_-|cytochrome-c-oxidase,-cbb3-type-subunit-II
MKHEAVEKNIGLLAFFMVIAVSVGGLTQIVPLFFQDVTNKPVEGMKPRSALELEGRDVYIANGCVGCHSQMIRPFRAETERYGHYSVAGESVWDHPFLWGSKRTGPDLARVGGRYSDDWHRAHLYNPRNVVPESKMPAYPFLVENKLDGKDTAKKMEVLRTLGVPYTDEDIAGAKDAVKGKTEMDALVAYLQGLGTIIKSKR
>NZ_CP015852.1|WP_003175465.1|2033106_2033292_-|CcoQ/FixQ-family-Cbb3-type-cytochrome-c-oxidase-assembly-chaperone
MDIGMIRGLGTVVVMVAFIGLALWVFSPKRKSEFEDATLLPFADDPEAIKHVEQASRSNKE
>NZ_CP015852.1|WP_064586798.1|2032126_2033110_-|cytochrome-c-oxidase,-cbb3-type-subunit-III
MTTFWSLYVTVLSLGTIFALTWLLLSTRKGQRSEQTDETVGHSFDGIEEYDNPLPKWWFMLFVGTIVFALGYLVLYPGLGNWKGLLPGYNYLDNDKQTAFANGKTGWTGVHEWEKEMARSDAKFGPIFAKFAAMPIEEVAKDPQALKMGGRLFASNCSVCHGSDAKGAYGFPNLTDADWRWGGEPETIKTTIMGGRHAVMPAWAEVIGEQGVADVAAFVVTQLDGRKLPEGTKADPANGQKLFAANCVACHGPEGKGTPAMGAPNLTHPAAFIYGSSFAQLQQTIRYGRQGQMPAQEQLQGNDKVHLLAAYVYSLSHGDKPAEAEAQ
>NZ_CP015852.1|WP_064586797.1|2031066_2032071_+|phosphoesterase
MKIKEVKKLFACLCLLSLSSFAWAIEGVPQHMVFASDPQYPWTEKSDSGEDESSADFEKRSKWLVESQFASIAQFRNEMGGQAAVPLMINGDMTAFGHGWQRSFVRTMLKKHFGDHYLYGLGNHDYQNNVNDCFSESCAAGSIVDYRDHHVDKVDEFDLEVTGSFLSKHYLGSLAYSKNIGEVHLVQLNNEPTYQVKISHALNPTSFDIRQSLDWLEKDLRLARAQGYAIIINMHKPYDWAGSWDQEKRFREMIETYQVTAIFAGHFHAEGGSKTNVGSVPMFLSGAASQQTYLTASFSRDRKQLEVSLVEANEWRKRTPVATVPVKSIWANRP
>NZ_CP015852.1|WP_157772043.1|2040467_2040674_-|hypothetical-protein
MLDEAKLYRLPVATQSRRPASMNSVSARKPAKQKARDELTFLEVRQAARDGQKVFDKFVITGRLPITK
>NZ_CP015852.1|WP_064586804.1|2041002_2042568_-|methyl-accepting-chemotaxis-protein
MRNNQPITQRERTFPAQQRLISTTDAKGVITYCNDAFVEISGFSREELIRAPHNLVRHPDVPAAVFSHMWGTLKQGLPWMGIVKNRCKSGDHYWVNAYVTPVFEGNQVVGYESVRIKPTAEQIRRAEALYQRINQGKSAIPSSDKWLPVLQDWLPFILVSQLSFVIGATLNSHWGFALAAGLSVPLGLMGLQWQQRGLKRLLRLAEQTTSDPLIAQMYTDSRGAQARLEMSILSQEARLKTCLTRLQDTAEHLTDQAKQSDSLAHSSSTGLERQRVETEQVATAVNQMAATTQEVASHVQRTADATQEANRLTGRGRDIAGETREAIQRLSVVVGETGLTVTQLAKDSDEIGGVVDVIKGIADQTNLLALNAAIEAARAGEMGRGFAVVADEVRQLAQRTSESTGQIHALIAKLQQTASSAVQTMEAGHRQAEEGVARVLEADQALVGISEAVANITDMTTQIAAATEEQSAVAEEISRNISNISELADQTSEQAHNSALLSEELTKTANTQYSLVERFNR
>NZ_CP015852.1|WP_064586805.1|2042670_2043462_-|CPBP-family-intramembrane-metalloprotease
MKALPWLYLALLSLGYGWALSVGRLGWLALISLGLLLVAGFAVRQQQVPVARLLGHALFIFLALSLALHWLPGFDNGRAIARMRFTDDAVPFAMYLNLDKPLIGFWLLLACPWIVAARSLRLTLYASVLGLALSATLALGGALLFGMIAWAPKWPDQAWLWLLNNLLLVTLVEEALFRGYIQGGLSRLFKHLPQGENLALLLASLIFALAHLGAGWHWVLLAGLAGVGYGLAYRYGGLAAAIATHFGLNLLHFALFTYPMLAG
>NZ_CP015852.1|WP_064586806.1|2043692_2044379_-|DJ-1/PfpI-family-protein
MTLQIGFLLFPQVQQLDLTGPYDVLASLPDVQVHLIWKDLVPVTASTGLLLKPTTTFDDCPDLDVICVPGGAGVGPLMEDEQTLGFIQRQAAQAKYVTSVCTGSLVLGAAGLLKGKRATTHWAYHELLPKLGAIAVKDRVVRDGNLFTGGGITAGIDFALVLAAELVGAEAAQLIQLQLEYAPAPPFESGNPQTAPSAIVDEARERAAASLKTRTAITERAAAKLDLR
>NZ_CP015852.1|WP_064586807.1|2044468_2045455_+|GlxA-family-transcriptional-regulator
MPKAIHVLAFANMQILDVTGPLQVFASANDLARQRGLPVPYKPSVIAREGGAVMSSAGLAVLAEPLPQEPSDTLIIAGGWGIYPAAEDLALVGWVREHAAGCRRVASVCTGAFLLAASGWLDGRRVVTHWTRCEQLAQQHPKLQVEANPIFINDGPVWTSAGVTAGIDLALAMVEQDLGRDLALDVARHLVVFLKRPGGQSQFSVTLALQNQGNRFDDLHAWIAEHLTCDLGVPTLAEQAGMSERSFVRHYRADTGQTPARAIELIRVETARRLLSDTGLPVKRIAANCGFGSEETLRRSFLRAIGVTPQAYRERFSVNAGEAESATP
>NZ_CP015852.1|WP_064586808.1|2046109_2046499_-|hypothetical-protein
MTQHVHRPIATPLRTGLTRIQLWDDADKGLIKCWEIGRQRAARFPDLAQKCLAGELPVLGWKGGVSRSLKKNEKYGSLKYLAQWQGLRGEDLDIDLGEERALTCSRTKMRVTFTPDRTKYFNQVAEAEA
>NZ_CP015852.1|WP_064586809.1|2046890_2048717_-|glycoside-hydrolase-family-15-protein
MAEHHLERQSSIDAHGIIGDMRSAALVNDKGSVDFFCWPEFDSPSIFCSLLDTPDAGIFQLAPDLPDARREQIYLPDTNVLQTRWLSDDAVVEITDLLPVGDSEDDLPMLMRRVRVVSGAATFNMRCAVRHDYARAETRAQMAGQSVIFSAEGQPSLRLVADQALRIDGESAVASFSLQHNETAEFILGGADDPRFKDDGAKMCLERTLKFWRDWIGQSNYRGRWREMVNRSALALKLLTSRKHGAILAAATFGLPETPGGERNWDYRYTWIRDASFTVYAFMRLGFVSEANAYMSWLRGRVSDCQGHSTKLNILYAIDGRQELPETELTHLSGHGGAQPVRIGNGAYDQIQLDIFGELMDAVYLVNKYGDAISHEGWKHVREVVDQVCETWQTTDVGIWEMRGEQHHFLHSRLMCWVALDRAIRLASKRSLPAPFVQWDQTRQAIYADIWDNFWDEDRGHFVQYKGGTALDGSMLLMPLVRFVSAKDPRWLSTLEAIEKSLVRDGMVYRYRNDDANIDGLTGTEGAFAACSFWYVECLARAGQVEKAHLEFEQLLRYANPLGLYAEEFDSKGRHLGNTPQALTHLALISAASFLDRRLSGEKSEWQP
>NZ_CP015852.1|WP_064586810.1|2048709_2049510_-|glucose-1-dehydrogenase
MQISLARQVALVTGASSGIGHAAAKALAAAGAAVVINYNRQAEPAEALARQIIADGGQAIAIGADVSKEDEVERLFAETLEAFGSLDILVANSGLQKDAAAVDMTLEDWNTVIGVNLTGQFLCARAALRIFNRQGVREGVSRAAGKIIHMSSVHQRIPWAGHVNYAASKGGVDQLMQTLAQEVSHQRIRINGIAPGAIRTAINSEATAGAAGEKLLELIPYGRIGDVEDVANAVVFLASDASDYIVGTTLFIDGGMSLYPEFRGNG
>NZ_CP015852.1|WP_064586811.1|2049753_2050926_+|MFS-transporter
MANPYRELFTAPGARNFVLAGMIARMPISMTGIGVITMLSQLKGGYALAGAVAATFALATAFCAPQVSRLVDRFGQGKVLPLSALLGGGALLMLLLCTRLQAPTWTLFIFAALAGCMPSMSAMVRARWTEIYRGQPQLQTAYALESVLDEVCFIVGPPLSVGLCVVAFPEAGPLAALLALAIGVSLFVAQRSTEPAVHPQESQHQGSIIRSTDIQWLLALMVAMGVIVGVVDVVSVAFAQQQGQPAAASIVLSVYAIGSCLAGIAFGAMRSKWPLPRLFLYGGIATAVTTLPLLLASNIFGLSLAVFVAGLFFSPTLIVAMALVERIVPAAKLTEGLTWLVTGLSIGVALGAAGSGALVDAFGARSGFWLAIVAGAVVLGSAVQSFRHLK
>NZ_CP015852.1|WP_082920296.1|2051004_2051739_+|thioesterase
MTQLTLLCLPYSGASAMVYSRWRRKLPQWLTLQPVELPGRGARFNEPLQTDLRTLARQLAAELQPSLRAPYAIFGHSLGALLACELAHALRALGLPEPVALFASGTAAPTMRSDYDRGFAEPKTDAELIEQLRSLNGTSEEVLASAELMSLTLPILRADFLLCGTFHPLQRALLKCPIHVLGGTTDRATTEQLIGWSKETLGSFSVDMLAGGHFFIHEHEAKVLKVIKDQLEVHHRRHSLMAAV

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Crispr_ID: NZ_CP015852_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP015852_3

2474334-2474430

Orphan

Consensus_repeat	Method
CTGTAGGAGTGAGCCTGCTCGCGAT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP015852_3

>merge|NZ_CP015852|3|2474334-2474430|CRISPRCasFinder
CTGTAGGAGTGAGCCTGCTCGCGATGGCGGCCTGACAGCCGACCAGTCTCCAAGTGAATGCACCCAATCCCACTGTAGGAGTGAGCCTGCTCGCGAT

>NZ_CP015852|3|3|2474334-2474430|CRISPRCasFinder
CTGTAGGAGTGAGCCTGCTCGCGAT	GGCGGCCTGACAGCCGACCAGTCTCCAAGTGAATGCACCCAATCCCA
CTGTAGGAGTGAGCCTGCTCGCGAT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP015852.1\|WP_064587109.1\|2466032_2466962_-\|amidohydrolase	unknown	unknown	gnl\|CDD\|225070
NZ_CP015852.1\|WP_064587113.1\|2468289_2468754_+\|(2Fe-2S)-binding-protein	unknown	unknown	gnl\|CDD\|224991
NZ_CP015852.1\|WP_064587106.1\|2462853_2463471_-\|UbiX-family-flavin-prenyltransferase	unknown	unknown	gnl\|CDD\|235677
NZ_CP015852.1\|WP_064587117.1\|2470973_2471867_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|182183
NZ_CP015852.1\|WP_064587123.1\|2475824_2476892_-\|phosphotransferase-family-protein	unknown	unknown	gnl\|CDD\|270703
NZ_CP015852.1\|WP_064587124.1\|2477048_2478017_-\|2-hydroxyacid-dehydrogenase	unknown	unknown	gnl\|CDD\|240633
NZ_CP015852.1\|WP_064587115.1\|2468753_2470967_+\|xanthine-dehydrogenase-family-protein-molybdopterin-binding-subunit	unknown	unknown	gnl\|CDD\|224446
NZ_CP015852.1\|WP_064587119.1\|2472052_2473549_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225107
NZ_CP015852.1\|WP_064587111.1\|2467280_2468171_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|182990
NZ_CP015852.1\|WP_003224037.1\|2465122_2466028_-\|amidohydrolase	unknown	unknown	gnl\|CDD\|225070
NZ_CP015852.1\|WP_064587136.1\|2484358_2486968_-\|bifunctional-aconitate-hydratase-2/2-methylisocitrate-dehydratase	unknown	unknown	gnl\|CDD\|236424
NZ_CP015852.1\|WP_064587138.1\|2487435_2487906_+\|DUF1289-domain-containing-protein	unknown	unknown	gnl\|CDD\|225850
NZ_CP015852.1\|WP_007965755.1\|2475034_2475802_-\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|180802
NZ_CP015852.1\|WP_064587126.1\|2478059_2479049_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP015852.1\|WP_064587128.1\|2479171_2479696_-\|cysteine-hydrolase	unknown	unknown	gnl\|CDD\|238496
NZ_CP015852.1\|WP_064587121.1\|2473683_2473941_+\|DUF1652-domain-containing-protein	unknown	unknown	gnl\|CDD\|311697
NZ_CP015852.1\|WP_064587135.1\|2482544_2484191_+\|SulP-family-inorganic-anion-transporter	unknown	unknown	gnl\|CDD\|223732
NZ_CP015852.1\|WP_064587107.1\|2463467_2464853_-\|UbiD-family-decarboxylase	unknown	unknown	gnl\|CDD\|223121
NZ_CP015852.1\|WP_064587130.1\|2479902_2480286_-\|tautomerase-family-protein	unknown	unknown	gnl\|CDD\|379645
NZ_CP015852.1\|WP_064587133.1\|2481183_2482464_+\|HAAAP-family-serine/threonine-permease	unknown	unknown	gnl\|CDD\|273283

Protein	Function_ID	Function_description	E-value
NZ_CP015852.1\|WP_064587109.1\|2466032_2466962_-\|amidohydrolase	gnl\|CDD\|225070	COG2159, COG2159, Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only].	9.21283e-63
NZ_CP015852.1\|WP_064587113.1\|2468289_2468754_+\|(2Fe-2S)-binding-protein	gnl\|CDD\|224991	COG2080, CoxS, Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs [Energy production and conversion].	1.3208e-72
NZ_CP015852.1\|WP_064587106.1\|2462853_2463471_-\|UbiX-family-flavin-prenyltransferase	gnl\|CDD\|235677	PRK06029, PRK06029, UbiX family flavin prenyltransferase.	3.1132e-99
NZ_CP015852.1\|WP_064587117.1\|2470973_2471867_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|182183	PRK09986, PRK09986, LysR family transcriptional regulator.	3.87585e-87
NZ_CP015852.1\|WP_064587123.1\|2475824_2476892_-\|phosphotransferase-family-protein	gnl\|CDD\|270703	cd05154, ACAD10_11_N-like, N-terminal domain of Acyl-CoA dehydrogenase (ACAD) 10 and 11, and similar proteins. This subfamily is composed of the N-terminal domains of vertebrate ACAD10 and ACAD11, and similar uncharacterized bacterial and eukaryotic proteins. ACADs are a family of flavoproteins that are involved in the beta-oxidation of fatty acyl-CoA derivatives. ACAD deficiency can cause metabolic disorders including muscle fatigue, hypoglycemia, and hepatic lipidosis. There are at least 11 distinct ACADs, some of which show distinct substrate specificities to either straight-chain or branched-chain fatty acids. ACAD10 is widely expressed in human tissues and highly expressed in liver, kidney, pancreas, and spleen. ACAD10 and ACAD11 are both significantly expressed in human brain tissues. They contain a long N-terminal domain with similarity to phosphotransferases with a Protein Kinase fold, which is absent in other ACADs. They may exhibit multiple functions in acyl-CoA oxidation pathways. ACAD11 utilizes substrates with carbon chain lengths of 20 to 26, with optimal activity towards C22CoA. ACAD10 may be associated with an increased risk in type II diabetes. The ACAD10/11-like subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K).	5.2042e-96
NZ_CP015852.1\|WP_064587124.1\|2477048_2478017_-\|2-hydroxyacid-dehydrogenase	gnl\|CDD\|240633	cd12156, HPPR, Hydroxy(phenyl)pyruvate Reductase, D-isomer-specific 2-hydroxyacid-related dehydrogenase. Hydroxy(phenyl)pyruvate reductase (HPPR) catalyzes the NADP-dependent reduction of hydroxyphenylpyruvates, hydroxypyruvate, or pyruvate to its respective lactate. HPPR acts as a dimer and is related to D-isomer-specific 2-hydroxyacid dehydrogenases, a superfamily that includes groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric.	8.90402e-131
NZ_CP015852.1\|WP_064587115.1\|2468753_2470967_+\|xanthine-dehydrogenase-family-protein-molybdopterin-binding-subunit	gnl\|CDD\|224446	COG1529, CoxL, Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs [Energy production and conversion].	2.16275e-81
NZ_CP015852.1\|WP_064587119.1\|2472052_2473549_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|225107	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription].	8.23341e-26
NZ_CP015852.1\|WP_064587111.1\|2467280_2468171_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|182990	PRK11139, PRK11139, DNA-binding transcriptional activator GcvA; Provisional.	5.21179e-59
NZ_CP015852.1\|WP_003224037.1\|2465122_2466028_-\|amidohydrolase	gnl\|CDD\|225070	COG2159, COG2159, Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only].	5.62849e-69
NZ_CP015852.1\|WP_064587136.1\|2484358_2486968_-\|bifunctional-aconitate-hydratase-2/2-methylisocitrate-dehydratase	gnl\|CDD\|236424	PRK09238, PRK09238, bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase; Validated.	0
NZ_CP015852.1\|WP_064587138.1\|2487435_2487906_+\|DUF1289-domain-containing-protein	gnl\|CDD\|225850	COG3313, COG3313, Predicted Fe-S protein [General function prediction only].	1.84948e-18
NZ_CP015852.1\|WP_007965755.1\|2475034_2475802_-\|SDR-family-oxidoreductase	gnl\|CDD\|180802	PRK07035, PRK07035, SDR family oxidoreductase.	0
NZ_CP015852.1\|WP_064587128.1\|2479171_2479696_-\|cysteine-hydrolase	gnl\|CDD\|238496	cd01014, nicotinamidase_related, Nicotinamidase_ related amidohydrolases. Cysteine hydrolases of unknown function that share the catalytic triad with other amidohydrolases, like nicotinamidase, which converts nicotinamide to nicotinic acid and ammonia.	7.24351e-53
NZ_CP015852.1\|WP_064587121.1\|2473683_2473941_+\|DUF1652-domain-containing-protein	gnl\|CDD\|311697	pfam07865, DUF1652, Protein of unknown function (DUF1652). This is a family containing hypothetical bacterial proteins.	3.99566e-16
NZ_CP015852.1\|WP_064587135.1\|2482544_2484191_+\|SulP-family-inorganic-anion-transporter	gnl\|CDD\|223732	COG0659, SUL1, Sulfate permease and related transporters (MFS superfamily) [Inorganic ion transport and metabolism].	2.58975e-97
NZ_CP015852.1\|WP_064587107.1\|2463467_2464853_-\|UbiD-family-decarboxylase	gnl\|CDD\|223121	COG0043, UbiD, 3-polyprenyl-4-hydroxybenzoate decarboxylase and related decarboxylases [Coenzyme metabolism].	8.83147e-143
NZ_CP015852.1\|WP_064587130.1\|2479902_2480286_-\|tautomerase-family-protein	gnl\|CDD\|379645	pfam14552, Tautomerase_2, Tautomerase enzyme.	2.22032e-38
NZ_CP015852.1\|WP_064587133.1\|2481183_2482464_+\|HAAAP-family-serine/threonine-permease	gnl\|CDD\|273283	TIGR00814, membrane_transport_protein_YhjV, serine transporter. The Hydroxy/Aromatic Amino Acid Permease (HAAAP) Family- serine/threonine subfamily (TC 2.A.42.2) The HAAAP family includes well characterized aromatic amino acid:H+ symport permeases and hydroxy amino acid permeases. This subfamily is specific for hydroxy amino acid transporters and includes the serine permease, SdaC, of E. coli, and the threonine permease, TdcC, of E. coli.//added GO terms, none avaialbelf or ser/thr specifically [SS 2/6/05] [Transport and binding proteins, Amino acids, peptides and amines].	1.8766e-177

>NZ_CP015852.1|WP_064587121.1|2473683_2473941_+|DUF1652-domain-containing-protein
MMNLAQLRVRLEQSFAPLACECLVDGDQSLTVKLYHPMSGQVDLVISGLKLSALRTAEAVEALIEELRYELESISLRSSRDPDLA
>NZ_CP015852.1|WP_064587119.1|2472052_2473549_+|helix-turn-helix-transcriptional-regulator
MSQEVLTTETNRRQLQQIIAGLSDGVILLELDRSLLWANEAALRMHGVNRIGELGNDADEYAQRFSLRYRNNHTVPPENYPISRVARCETFSDVLIEVSPVSDPERVWVHSVRSMVLTDREGQPESLVLIMSDVTDWANAEQRFEKTFNANPAPAVICRLSDLRYIKVNPGFLEMTGYSRDQVIGASTYELDVLEQAERRDLAIERLRDGATIPQMQAELRLPDGSSKQVIVAGQTLQLNDEGCMLFSFVDIEPRHKAEVALRQSEERFAKAFRLTPVPILICSADEQRVIDVNQAFLETLAYDSDDVLDKTVVQLAFIDDSAARTRLLTALEKTGRIDRVDVRVRKKDAEVLECALSADTVNIHDKSCYLLVLMDITERKRTELELVAAIEEVMKDASWFSRTLIEKLANVKKVNSPQLPSVSFTDLTARERDVLGLICEGLADKEIAARLKLAPNTVRNHVATVYSKLDVHSRSEAIVWARERGLFSGEWRPKGQR
>NZ_CP015852.1|WP_064587117.1|2470973_2471867_+|LysR-family-transcriptional-regulator
MDLRLLRYFMALADELHFGRAAERLHICQPPLSQQIRLLEEELGTPLFERSHHRVELTAAGQMLKEQAPLVFEQLERALDLTRQTGRGQLGELEIGMISSVMVGVLPKALHLFRERYPQVNWRLHEMTPAAQVKALKEKRIDACVFRVGYDDPLLRNELLIYEPIHVVMPADHPLASRAVLAPADLARELFVALELKQSRFAHFLYQCCIQAGFTPQIRQQVIEVQTLLSLVRAGFGVALLPASIEQLAPAGLVFRKLTPALPEVPLYATYRADDASPVLKLFLDTLRELVETSSQH
>NZ_CP015852.1|WP_064587115.1|2468753_2470967_+|xanthine-dehydrogenase-family-protein-molybdopterin-binding-subunit
MSLLDDTLIEPSRRVFLKQAATVASGLAIALYLPSGIAASDPKAPAPASEFEPNAWVRIFPDGTVKLVVHKHDSGTGTQTALAACVAEELDVNPMTVQVITPEDPFFDTYIHPIWKVFSTGGSTSVSLEYDRLRMAGATARALLITAAAKQWKVSPDSCSTEEGRVVHPSSKRSLGYGELVGVAARLPAPAHVTLKDPAQFKYIGKLRHKRDAAAKVCGGFKYSIDVQLPGMLVAVIQRAPVVGAKVINVDSTAALQVPGVRKVLAIPGRPDVLGGNLEGVAVLADTFWAAQQGRKVLEIKWSDSPLAGFDSAELSKAQAAAIADPAAQTVKAMSNGDVAGQWASAAKLIEADYTMPYKVQNPLEPICITAQVKDQAITYWGGVQVPSSALEAAQTVCGIDKDKVTINELVSGGSFGAREAKYWLFEVAYLAQQTGVPVKLLNSREDEMHALFNHPATLHRVKGALDAQGKLNALQLHAVSPASPEQWEPGYFERPDHMDYSTTEAITAWDFAYRPPHLELNWVKHESHVPSGWYRSVSFIPNVFAVESFMDELAHAAGADPLAFRLANMQERPRHVAVLKLAAERAGWGQPLPPGTALGIATNQGYTSFIAVVAQVATVDGKPKVEKLTCVVDCGLAVSPGGVEEQIYGGLMWGLGHALFDRLDIQQGRVVQSNFHDYRVTRMSDMPATDIVVLDGEPGKPGGVGELGSPSVAPAIANALFALTGIRQRSTPLSLG
>NZ_CP015852.1|WP_064587113.1|2468289_2468754_+|(2Fe-2S)-binding-protein
MIAFTVNGERRELDEASPSMPLLWVLRDQLKLTGTKFGCGMGLCGACTVHLDGVAVRSCQLPLAAVAGHSITTIEGLSPTQSHPLQLAWVAEDVPQCGYCQSGQIMSAAALLNTGAAVTDDSIRNAMTGNICRCGTYGRINKAIKRAANAPKEA
>NZ_CP015852.1|WP_064587111.1|2467280_2468171_-|LysR-family-transcriptional-regulator
MYKRYPSVQSMSAFIHAARSGSFSSAARKLDLTHSAISQQIRALEDFIGQPLFVREGGGSNLTDAGQLFASVLSDGLAQIDRALSSVKNRSVAQRLTLDVDSELAQSWLNPRLPELLDGLPDYEVTLRSMPRSDRSTFERVDLALRYGYGDWDECEMTQICGDRVLAVASPALLERYGLQVPLSPAQILELPLLGYTRRSWIPWLDAAGMPPVEPPARVIFDNAANLIAAAEAGVGAGLVRGLLAADALRNGRLVALNEAQIAAHYNLYAVWPHGQAERVAPVVEVIKELALRTQT
>NZ_CP015852.1|WP_064587109.1|2466032_2466962_-|amidohydrolase
MIIDISCYPTDLVDLAWRHDGDPFTGERLLEMMDGPYMVNGKPRRIDKAFIQPPQGNTIYTWTDGELSGRESIDAYMAYTLKMVQTYPDRFIGCFVYNPRCGVENGVEAIERYVKEHGFKMVQMQANMHAYRPDRALDWVRPCFEKCAELGIPVKLHTGDGPYSIPSEWVPMIKEFPNVDFIMAHFGVQTGGVYVFEPMQWAMELPNVYCESGWCLQSRIVEFAKVLPTHKILFGTDTPPNEPGMWLRLLEVLCHEPPQGLNLDEDTLEDYLGNNTARMIGLEPTPPPRSVSEAEAQLKRPVTTQLARS
>NZ_CP015852.1|WP_003224037.1|2465122_2466028_-|amidohydrolase
MIIDTHLHPTNLVDEAWRHTGEPFTGERMLKLMDGPYMINGKPRRIDMGFIQPPPGNTGYRDGNRRGREGVRDYMSYVAELCVKYPDRFIGNFNFNPRWGPENGAAELEFHIKEYGFKMLKLHANMHGYRPDRALDWLRPAMKVCAKYNIVVLIHTGDGPYTIPTMFYPIIREFPMVNFIIGHFGIQTGGNYSFEAFWMAMDTPNVYCESGWCFQSRIVEFAKELPRNKIVFGTDSPPNEPGMWLRELEVLCSPAPQGLGIDEDHLEDYLGNNIARLCGIEPTPPPKDLVEADIRLTTTYL
>NZ_CP015852.1|WP_064587107.1|2463467_2464853_-|UbiD-family-decarboxylase
MTRSTLGDSQDFHVFIDAYRREYPDDVLTITQPISADQDVTALVDALAAQGRDPLLICERVGTLGVPVASNLFASRTRIARLFGVTAAQLHETFQRRANQPIAPRYVESGPILDEVFEGEALDLALLPMLKHFDSDRGPYITNAIIIAEDPQTGIANMSYHRSMRHARQALATSLHSRGHLWRMLQTARERGEELRVAMVVGAHPLFMLAAAARLPYGADERAVAGGLFGAPLELVKTPRYGIGVPAYAEFVLEGAIDPAAYAEEGPFGEFSGYSSDRSTNNVLRVDTLLRRKDAWLVDVMGGRYAEHLTLARLPREAEMSEKLKARFPAVTAVHYPNSGTHFHCYVALDQSRDGEARQIMLALLGWDPYLKTVIAVDSDIDITDDSQVLWALATHFQPHLDLFMIDGLPGSPLDPSSSVNGTTSRMGLDATRGSAFDGIKAQLDHDVLERARVLLKGLSA
>NZ_CP015852.1|WP_064587106.1|2462853_2463471_-|UbiX-family-flavin-prenyltransferase
MSRQRMVVGISGASGFIYGVRLLQLLAELDIESHLIISRAALLTMAHETDYKLADVTALASHYHRADDVAAGIASGSFRCLGMVVAPCSMRTLAEIATGTSSGLIGRAADVTLKERRTLVLMARETPLTLAHLRNMTAVTEMGGVIAPPVPAFYARPESLAQMVDHSLGRVLDLFGLDAGTATRWQEPISPCRSEPARDGGVSVT
>NZ_CP015852.1|WP_007965755.1|2475034_2475802_-|SDR-family-oxidoreductase
MSKTQLFDLDGKIAFVSGASRGIGEAIAKLLAQQGAHVIVSSRKLEGCQHVADAIIAAGGKATAVACHIGEMEQISQVFAGIKEQFGRLDILVNNAATNPQFCNVLDTDLGAFQKTVDVNIRGYFFMSVEAGKLMRENGGGSIINVASINGISPGVFQGIYSVTKAAVINMTKVFAKECAQFGIRCNALLPGLTDTKFASALVKNDAILKQALTQIPLKRVADPSEMAGAVLYLASDASSYTTGVSLNVDGGFLS
>NZ_CP015852.1|WP_064587123.1|2475824_2476892_-|phosphotransferase-family-protein
MALTDQSTRIRDGEELDASLIDPYLKAHIPGLTGTPQISQFPGGASNLTYLLEYPQQEFVLRRPPFGHKAKSAHDMGREFRILNQLRDGFPYCPKAYVHCTDESVIGAEFYVMERVKGIILRSDLPPELGLDAAKTEALCKSFIDRFVELHRVDYNACGLSDLGKPEGYVARQIKGWSERYEKALTPDAPHWEKVKAWLNDKMPADHPTSSIVHNDYRFDNVILDPANPMQIIGVLDWELTTLGDPLMDLGNTLAYWIEAGDPAPVQLMRRQPSHAPGMLTRREFVDYYAERAGIQIDNFDFYYTYGLFRLAGIVQQIYYRFYHGQTQDKRFAQFIHMNKLLEHMSLQVIAKSSL
>NZ_CP015852.1|WP_064587124.1|2477048_2478017_-|2-hydroxyacid-dehydrogenase
MPATVLVLVETINDYLPILEQQGFHLILAPTPAERAQAITTHGARIDAVLTRGPLGLTADEIAALPILKIITVIGAGYEHVDLQAASDRGITVTNGAGVNASSVADHAMAMLLALVRDIPRCDAAVRRGEWPKIMRPSLANKRLGILGLGAVGLAIAKRANLGFDMDISYHSRQVRSDVPYAFCSTPTELARASDFLVVATPGGIGTQHLVTRAVLDALGPKGFIVNIARASVIATADLITALEQRRIAGAALDVFDHEPQVPDALKTLSNVVLTPHVAGLSPEATQGTVELVGKNLVAFFSGQPVLTPIALPPRLNNQRVH
>NZ_CP015852.1|WP_064587126.1|2478059_2479049_-|hypothetical-protein
MGKGIKMVSAVDTYNQPYTLENLQQKHDNHQTVPALLCDGGGCKVPVRFVPRGLRNNPGKEPSDRAAYIGLTAGAESDHKPGCKYDALGQLKTIIADQSDPDFIGAIDHGQFELRLLLLHNSLGGKSLAGSEHTPSSTGDSATRRPSVYQASGNKLDSYLRTTSDILKLRARCEADDVLKNNLILRFGDKKIRWSEFYFEPDRYEDAWKMAHRRGNQCHPFAIAGTVKQLKAPKDGGKQVNHYLNLHSEYNRADAEDIVNTFDISVGSTEAVWLAKFSEDTEIIMFGVWSVGSPRKNPYRKGTADKVTNFVNHGLTLYPKFHRQLLKVV
>NZ_CP015852.1|WP_064587128.1|2479171_2479696_-|cysteine-hydrolase
MSGALLIIDMQVGLFHGPEKPHDGERVLANIQQLIAKARQQDVPIFAVRHTGPEGSPTAAGSRFWQLLPALELNADVDLLFDKSRPDAFHNTDLAQQLKTKKVDELYLVGMKTQFCIDSTCRAAADLGFKPLLVADAHTCMDTPALPAQAIIEHHNATLGATFARLINSADVTF
>NZ_CP015852.1|WP_064587130.1|2479902_2480286_-|tautomerase-family-protein
MPLVRVDIRKHADPGFAKRIGEQIYAAMRSTINVPEHDNFQILNEHDGEHFIFDPQYLGIQRSEQLVIIQITLNEGRTLEQKKALYQTIAHSLNSQLGIRLEDVFINLVEVEKENWSFGNGIAQYAS
>NZ_CP015852.1|WP_064587133.1|2481183_2482464_+|HAAAP-family-serine/threonine-permease
MNDQANSVDERYEAAAPAELSSWNRHDTTWMLGLFGTAIGAGTLFLPINAGLGGFWPLVILALLAFPMTFFAHRGLTRFVLSGREGADITDVVEQHFGIKAGALITLLYFFAIFPILLIYSVGLTNTVASFLEHQLHITPPPRALLSFVLILGLLAVVRCGEQAIVKAMSLMVYPFIVALLFLAVYLIPHWNGGILTTASQVPAPSALLHTLWLAIPVMVFSFNHSPIISAFAVDQKRRYGVNADQRSSQILCRAHLLMVVMVLFFVFSCVLTLSPEQLAEAKAQNLSILSYLANHFSNPTIAFAAPLIAFVAISKSFLGHYIGASEGLKGLIVKSGKRPGAKALDRIVAAFMLVVCWIVATLNPSILGMIETIGGPVIAAILFLMPMYAIRKVPAMARYRGQASNVFVSAVGLVAISALIYSLTA
>NZ_CP015852.1|WP_064587135.1|2482544_2484191_+|SulP-family-inorganic-anion-transporter
MSSAPQPVEQPSRWQDILAGLSIAGLLLPEAVAYSTIAALAPQAGVIALFAGLLCYGLFGTSRFAIVSATSSSAAVLAAATATMANGDPQLRATLAVGLVLVTGGLFLLAGIFRFGSVTAFIAKPVLRGFAFGLAATIILKQVASVVGVQLSDANLVRFAPQLLEQLPHWNWPAAAVAAVALVLLGVFSRFPRVPGGLLVVVIGIVVGQWLNLPAHGVKLIGLIDLSLEVPNLPMLPFADWLRLGEVGFALVMILYAESYGSISAYALKHGDRVTSNRDLLALGASNLLSGLFHGMPAGAGYSATSANEAAGATSRWAGGVAALVVLVIVLTVLPWIALTPEPILAAIVMHALGRGLSLQPLGRYFIWRRDRVLVLCAVGAVLVLGILDGLLVSVAISVLLMLKQMSAADIQVLGRIDGGHDFVDLQRHPTATTEPGVLIVRPSEALFFANVERILGAALHLIRHSDAPVHTVILSLEETPDLDGTSIEAMQEFFLRVHQEGKWLILARLKHGALVVLESLPEVTSNRVILSGLSVDGAVQQALKLNT
>NZ_CP015852.1|WP_064587136.1|2484358_2486968_-|bifunctional-aconitate-hydratase-2/2-methylisocitrate-dehydratase
MLEAYRKHIEERAALGIVPQPLNAEQTAGLVELLKNPPAGEEAFLVDLITNRVPPGVDEAAYVKAGFLSALAKGEVTSPLLDKKRAVELLGTMQGGYNIVTLVELLDNAELAPVAAEELKHTLLMFDAFHDVAEKAKNGNVHAKAVLQSWADGEWFKKRPVLADKISLRVFKVTGETNTDDLSPAPDAWSRPDIPLHALAMLKMARDGIVPDEQGKTGPMKQIEDMRGQGFPIAYVGDVVGTGSSRKSATNSVLWFFGDDIPYVPNKRAGGFCFGSKIAPIFYNTMEDAGALPIEFDVSNMNMGDVIDLYPHAGKVCKHGTDEVITTFEMKTPVLLDEVRAGGRIPLIIGRGLTEKARAELGLPAFDLFKKPEAPAESTKGFTLAQKMVGKACGLAEGQGVRPGTYCEPKMTTVGSQDTTGPMTRDELKDLACLGFSADLVMQSFCHTAAYPKPIDVTTHHTLPDFIMTRGGVSLRPGDGIIHSWLNRMLLPDTVGTGGDSHTRFPMGISFPAGSGLVAFAAATGVMPLDMPESILVRFKGKMKPGITLRDLVHAIPYFAIQNGLLTVEKKGKKNAFSGRILEIEGLEGLTLEQAFELSDASAERSAAGCTIKLSKESITEYLQSNITLLRWMIGEGYGDARTLERRAQAMEAWIANPQLMEADADAEYAEVIEIDLADISEPVLCAPNDPDDARLLSSVAGEKIDEVFIGSCMTNIGHFRAAGKLLDQVKGQLPTRLWLSPPTKMDAHQLTEEGYYGIYGKAGARMEMPGCSLCMGNQARVEPNSTVVSTSTRNFPNRLGDGANVYLASAELASVASILGRLPTVEEYMEYAGKIDSMAADIYRYLSFDQIAEFREAAANANIPVVQA
>NZ_CP015852.1|WP_064587138.1|2487435_2487906_+|DUF1289-domain-containing-protein
MPNQTIKTPCVGLCSTVYGDLVCRGCKRFHHEVIHWNGYGEEEKRAVWLRLEQLLSQVMASKVEIFDPARLREQLEQRKIRFVPHQSEYCWAYQLIARGARVIINLEAYGMVLLPEFRDWNLPELRDAIDREFFLLSEAHYQRYIAPGFLKDAFGA

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Crispr_ID: NZ_CP015852_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP015852_4

4750413-4750518

Orphan

Consensus_repeat	Method
CCGCCATCGCGAGCAGGCTCACTCCTATAGTTGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP015852_4

>merge|NZ_CP015852|4|4750413-4750518|CRISPRCasFinder
CCGCCATCGCGAGCAGGCTCACTCCTATAGTTGGATTGGGTGCGTTCAGCTGGAGACTGGTCGGCTGTCAGGCCGCCATCGCGAGCAGGCTCACTCCTACAGTTGG

>NZ_CP015852|4|4|4750413-4750518|CRISPRCasFinder
CCGCCATCGCGAGCAGGCTCACTCCTATAGTTGG	ATTGGGTGCGTTCAGCTGGAGACTGGTCGGCTGTCAGG
CCGCCATCGCGAGCAGGCTCACTCCTACAGTTGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP015852.1\|WP_064589058.1\|4765411_4766881_-\|IMP-dehydrogenase	unknown	unknown	gnl\|CDD\|235507
NZ_CP015852.1\|WP_064589047.1\|4745478_4746840_+\|porin	unknown	unknown	gnl\|CDD\|226185
NZ_CP015852.1\|WP_064589046.1\|4744307_4744946_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP015852.1\|WP_064589045.1\|4743341_4744130_+\|siderophore-interacting-protein	unknown	unknown	gnl\|CDD\|99790
NZ_CP015852.1\|WP_064589052.1\|4754103_4754745_+\|lysoplasmalogenase	unknown	unknown	gnl\|CDD\|377946
NZ_CP015852.1\|WP_003227831.1\|4744947_4745178_-\|DUF2132-domain-containing-protein	unknown	unknown	gnl\|CDD\|378300
NZ_CP015852.1\|WP_064589054.1\|4756782_4757280_-\|nucleoside-deaminase	unknown	unknown	gnl\|CDD\|223663
NZ_CP015852.1\|WP_064589043.1\|4741768_4742251_-\|fimbrial-assembly-protein	unknown	unknown	gnl\|CDD\|367947
NZ_CP015852.1\|WP_064589044.1\|4742766_4743345_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224609
NZ_CP015852.1\|WP_064589049.1\|4749974_4750346_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP015852.1\|WP_064589055.1\|4757279_4758656_-\|multicopper-oxidase-family-protein	unknown	unknown	gnl\|CDD\|225043
NZ_CP015852.1\|WP_064589053.1\|4755695_4756652_+\|tRNA-5-methoxyuridine(34)/uridine-5-oxyacetic-acid(34)-synthase-CmoB	unknown	unknown	gnl\|CDD\|237898
NZ_CP015852.1\|WP_064589048.1\|4747056_4749468_+\|glucose/quinate/shikimate-family-membrane-bound-PQQ-dependent-dehydrogenase	unknown	unknown	gnl\|CDD\|274418
NZ_CP015852.1\|WP_064589051.1\|4753714_4754107_+\|protease-inhibitor-I42-family-protein	unknown	unknown	gnl\|CDD\|378179
NZ_CP015852.1\|WP_064589056.1\|4758844_4763635_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|350611
NZ_CP015852.1\|WP_064589057.1\|4763733_4765311_-\|glutamine-hydrolyzing-GMP-synthase	unknown	unknown	gnl\|CDD\|234614
NZ_CP015852.1\|WP_099093354.1\|4737876_4739091_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP015852.1\|WP_064589050.1\|4751081_4753499_+\|endopeptidase-La	unknown	unknown	gnl\|CDD\|223542
NZ_CP015852.1\|WP_064590077.1\|4754955_4755699_+\|carboxy-S-adenosyl-L-methionine-synthase-CmoA	unknown	unknown	gnl\|CDD\|273244
NZ_CP015852.1\|WP_064589042.1\|4739138_4741661_-\|fimbrial-biogenesis-outer-membrane-usher-protein	unknown	unknown	gnl\|CDD\|374266

Protein	Function_ID	Function_description	E-value
NZ_CP015852.1\|WP_064589058.1\|4765411_4766881_-\|IMP-dehydrogenase	gnl\|CDD\|235507	PRK05567, PRK05567, inosine 5'-monophosphate dehydrogenase; Reviewed.	0
NZ_CP015852.1\|WP_064589047.1\|4745478_4746840_+\|porin	gnl\|CDD\|226185	COG3659, OprB, Carbohydrate-selective porin [Cell envelope biogenesis, outer membrane].	1.26375e-150
NZ_CP015852.1\|WP_064589057.1\|4763733_4765311_-\|glutamine-hydrolyzing-GMP-synthase	gnl\|CDD\|234614	PRK00074, guaA, GMP synthase; Reviewed.	0
NZ_CP015852.1\|WP_064589045.1\|4743341_4744130_+\|siderophore-interacting-protein	gnl\|CDD\|99790	cd06193, siderophore_interacting, Siderophore interacting proteins share the domain structure of the ferredoxin reductase like family. Siderophores are produced in various bacteria (and some plants) to extract iron from hosts. Binding constants are high, so iron can be pilfered from transferrin and lactoferrin for bacterial uptake, contributing to pathogen virulence. Ferredoxin reductase (FNR), an FAD and NAD(P) binding protein, was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methane assimilation in a variety of organisms. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal moeity may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Because flavins such as FAD can exist in oxidized, semiquinone (one-electron reduced), or fully reduced hydroquinone forms, FNR can interact with one and two electron carriers. FNR has a strong preference for NADP(H) vs NAD(H).	1.33981e-88
NZ_CP015852.1\|WP_064589052.1\|4754103_4754745_+\|lysoplasmalogenase	gnl\|CDD\|377946	pfam07947, YhhN, YhhN family. The members of this family are similar to the hypothetical protein yhhN expressed by E. coli. Many are annotated as possible transmembrane proteins, and in fact they all have a high proportion of hydrophobic residues. A human member of this family, formerly known as TMEM86B, is a lysoplasmalogenase that catalyzes the hydrolysis of the vinyl ether bond of lysoplasmalogen. Putative conserved active site residues have been proposed for the YhhN family.	7.44619e-33
NZ_CP015852.1\|WP_003227831.1\|4744947_4745178_-\|DUF2132-domain-containing-protein	gnl\|CDD\|378300	pfam09905, VF530, DNA-binding protein VF530. VF530 contains a unique four-helix motif that shows some similarity to the C-terminal double-stranded DNA (dsDNA) binding domain of RecA, as well as other nucleic acid binding domains.	1.77745e-42
NZ_CP015852.1\|WP_064589054.1\|4756782_4757280_-\|nucleoside-deaminase	gnl\|CDD\|223663	COG0590, CumB, Cytosine/adenosine deaminases [Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis].	1.4828e-60
NZ_CP015852.1\|WP_064589043.1\|4741768_4742251_-\|fimbrial-assembly-protein	gnl\|CDD\|367947	pfam04449, Fimbrial_CS1, CS1 type fimbrial major subunit. Fimbriae, also known as pili, form filaments radiating from the surface of the bacterium to a length of 0.5-1.5 micrometres. They enable the cell to colonise host epithelia. This family constitutes the major subunits of CS1 like pili, including CS2 and CFA1 from Escherichia coli, and also the Cable type II pilin major subunit from Burkholderia cepacia. The major subunit of CS1 pili is called CooA. Periplasmic CooA is mostly complexed with the assembly protein CooB. In addition, a small pool of CooA multimers, and CooA-CooD complexes exists, but the functional significance is unknown. A member of this family has also been identified in Salmonella typhi and Salmonella enterica.	2.13011e-10
NZ_CP015852.1\|WP_064589044.1\|4742766_4743345_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|224609	COG1695, COG1695, Predicted transcriptional regulators [Transcription].	4.47681e-17
NZ_CP015852.1\|WP_064589055.1\|4757279_4758656_-\|multicopper-oxidase-family-protein	gnl\|CDD\|225043	COG2132, SufI, Putative multicopper oxidases [Secondary metabolites biosynthesis, transport, and catabolism].	9.73244e-96
NZ_CP015852.1\|WP_064589053.1\|4755695_4756652_+\|tRNA-5-methoxyuridine(34)/uridine-5-oxyacetic-acid(34)-synthase-CmoB	gnl\|CDD\|237898	PRK15068, PRK15068, tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB.	0
NZ_CP015852.1\|WP_064589048.1\|4747056_4749468_+\|glucose/quinate/shikimate-family-membrane-bound-PQQ-dependent-dehydrogenase	gnl\|CDD\|274418	TIGR03074, PQQ_membr_DH, membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.	0
NZ_CP015852.1\|WP_064589051.1\|4753714_4754107_+\|protease-inhibitor-I42-family-protein	gnl\|CDD\|378179	pfam09394, Inhibitor_I42, Chagasin family peptidase inhibitor I42. Chagasin is a cysteine peptidase inhibitor which forms a beta barrel structure.	1.53511e-27
NZ_CP015852.1\|WP_064589056.1\|4758844_4763635_+\|hypothetical-protein	gnl\|CDD\|350611	cd14729, RtxA-like, C2-2 like domain of various multidomain toxins, including RTX-containing like proteins. This group contains mostly poorly-characterized C2-2 like domains of multidomain bacterial toxins, including Pasteurella multocida toxin PMT (also known as dermonecrotic toxin), MARTX (multifunctional-autoprocessing repeats-in-toxin holotoxin RtxA) proteins from Vibrio vulnificus, as well as bacterial effector protein from Pseudomonas syringae (type III effector HopAC1). MARTX domains at the N- and C- termini act in the translocation of the central domain across the eukaryotic plasma membrane, where it is proteolytically released. These are related to Pasteurella multicida toxin, which has structural and sequence similarity to the TIKI/TraB family of proteases. However, while this group of multidomain proteins shows fairly strong conservation of the active site residues of this family, the Pasteurella multicida toxin does not.	6.70429e-68
NZ_CP015852.1\|WP_064589050.1\|4751081_4753499_+\|endopeptidase-La	gnl\|CDD\|223542	COG0466, Lon, ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones].	0
NZ_CP015852.1\|WP_064590077.1\|4754955_4755699_+\|carboxy-S-adenosyl-L-methionine-synthase-CmoA	gnl\|CDD\|273244	TIGR00740, tRNA_cmo5U34-methyltransferase, tRNA (cmo5U34)-methyltransferase. This tRNA methyltransferase is involved, together with cmoB, in preparing the uridine-5-oxyacetic acid (cmo5U) at position 34. [Unknown function, Enzymes of unknown specificity].	1.05804e-99
NZ_CP015852.1\|WP_064589042.1\|4739138_4741661_-\|fimbrial-biogenesis-outer-membrane-usher-protein	gnl\|CDD\|374266	pfam15976, CooC_C, CS1-pili formation C-terminal. CooC_C is a highly conserved C-terminal domain on fimbrial outer membrane usher proteins like TcfC. The protein is required for CS1 pilus formation.	4.66813e-24

>NZ_CP015852.1|WP_064589049.1|4749974_4750346_+|hypothetical-protein
MKKPTPNPPETNDTSPYESIDSKKLHDAAERALDHYLKPSAALKLHKPSTMFQVAPGMDNESLLVHACESLASANIMTSDIAAYVDPPQRHTILAIQQVIMLAELAVNRVLDNVEIAQTPAHS
>NZ_CP015852.1|WP_064589048.1|4747056_4749468_+|glucose/quinate/shikimate-family-membrane-bound-PQQ-dependent-dehydrogenase
MSTESASSRGRLLPSLLGILLLLMGLAMLAGGVKLSMLGGSLYYLLAGIGIALSGILLLLRRRAALGLYAIVLFASTVWALWEVGLDWWQLVPRLALWFVLGIVMLLPWFRRPLLLAGPAPMGTGGLTVAVVLAGVTALASLFTHPGETFGELGRDTAEMTSTAPAMPDGDWQAYGRTEFGDRYSPLKQITPANVGKLQEAWRIQTGDLPTADDPVELTNENTPLKANGMLYACTAHSKVLALDPDTGKEIWRFDPQIKSPVGFKGFAHMTCRGVSYYDEAAYAKSENAASAVISEAGKAVAQACPRRLYLPTADARLIALNADTGKICEGFGKNGVVDLTQGIGPFTAGGYYSTSPAAITRDLVIMGGHVTDNESTNEPSGVIRAFDVRDGHLVWNWDSDKPDATEPLAPGETYSRNSANMWSLASVDEKLGMVFLPLGNQTPDQWGADRTPGAEKFSAGIVALDLATGKVRWNYQFTHHDLWDMDVGSQPTLLDMKTADGVKPALIAPTKQGSLYVLDRRDGTPIIPIREIPVPQGAVKGDHTAPTQARSDLNLLAPELTEKAMWGASPFDQMLCRIQFKELRYEGQYTPPSEQGSLIYPGNVGVFNWGGVSVDPVRQMLFTSPNYMAFVSKMVPREKVAAGSKRESETAGVQPNTGAPYAVIMHPFMSPLGVPCQAPAWGYVAGIDLTTGKVVWKRKNGTSRDSSPIPIGFTLGVPSMGGSMVTAGGVGFLSGTLDQYLRAYDVNTGKELWKSRLPAGGQATPMTYTGKDGKQYVLLVVGGHGSLGTKMGDYVIAYKLPE
>NZ_CP015852.1|WP_064589047.1|4745478_4746840_+|porin
MPDFSFSRDSAISALRLLGGCTALGFATYTQAAPAFDSDSPWMLGDWNGTRTELSEKGYDFKLDYTGEMGSNLHGGYDHDRTARYSDQFGLGTHLDLQKILGWDDAEFQLTITKRSGNNISNDRINDPRVGGFTSAQEVWGRGQTTRLTQMWYQQKFFDQKLDIKVGRFGEGEDFNSFPCDFQNLAFCGSQVGNWVGGIWYNWPVSQWALRVKYHLTPELYAQVGAYEQNPSNLDRGNGFKLSGSGTQGAVLPVELVWTPKLNGLPGEYRAGYYYSSAKAADVYKDQNGQPAALSGEAYRSASSKHGVWFGAQQQVTSIASDHSRGLSVFANATMHDKKTNAIDNYVQAGVVYKGPFDARAKDDIGFALARVHVNPAFRKNAEASNRANAVYDYDDPTFLPPQDTEYSAELYYGVHVANWLTVRPNLQYIRHPGGVDQVDDALIAGIKIQSSF
>NZ_CP015852.1|WP_003227831.1|4744947_4745178_-|DUF2132-domain-containing-protein
MNDHTPDPLHGVTLEQILNALVAHYEWSGLAERIDIRCFKSDPSIKSSLTFLRKTPWAREKVERLYVKLMRTKRPL
>NZ_CP015852.1|WP_064589046.1|4744307_4744946_-|hypothetical-protein
MDAVARRRLLTVIASLGWAGLSIQLYLIFLARLSVDASLLGGLVSFFSYFTVLTNTLVATVLTCAVTRRESAAQRWFLQPWVSSGIAVSIAVVGLAYSLLLRHLWHPQGWQFIADELLHDVMPLLFLGYWWCCVPKGTLRLWHLPLWLIYPLVYFIYALLRGHLLGAYAYPFIDVATLGYAQVFINAGGILLGFVLIGLALIGLDRWRGLRS
>NZ_CP015852.1|WP_064589045.1|4743341_4744130_+|siderophore-interacting-protein
MTAVDTQTIHRVMHEIKRRKLEVLRVVDLTPRMRRITLGGPELAGFISLGTDDHVKLLFPQNAEQSAALETLVLGAGKSAGPMPEMRDYTPRRYDLDKLELDIDFVLHGDGPASTWAEQAEPGQFLHIGGPRGSMIVPDIFDSYLLIGDETALPAIARRLEGLAANRKALVVIEVENGAEQQVLESAAQVNVIWVLREGGKDNLLTTVKQLQVPKGNLYAWVATETKVSRQIRRVLIDEHGLDEQLIKAVGYWRAEGTPEEE
>NZ_CP015852.1|WP_064589044.1|4742766_4743345_+|helix-turn-helix-transcriptional-regulator
MRDHHPPHPHHHPAHGDGLERRPGRERGGRGPRVFAPGDLKLLLLALIAEQPCHGYDLIRQIEGMFDGAYSPSPGVIYPTLTFLEESDLISGDADGGKKRYSVTDAGRLSLSEQAVALDGVRMRIDVSKRSLRGHDRPPEIHEAVHNLRHALQLHHGRWSAEEILRVRDLLNDTAKAIVDGPAVQSAPEKAE
>NZ_CP015852.1|WP_064589043.1|4741768_4742251_-|fimbrial-assembly-protein
MFKKIAFAAPLAVLALGSSMAFAATEARHSINIVAHVPADDFYAVPVDPDLVNKDQDMSFDPGTNAMRQINGHFDVLHTAGKVHARLEGVPKLIAGASTIDLKVELNGKELTTTSQEVVGKEESNTRYRAPFKISAKGLTGKPEAGDFTGVVMLVVEPSV
>NZ_CP015852.1|WP_064589042.1|4739138_4741661_-|fimbrial-biogenesis-outer-membrane-usher-protein
MFPMTPIATALALLLCSSAFAAPTSVDNTPRSLLAQAKGLPAEFEEHFFDVPLAVRVELDQQPLGEAMVVLSRDDRVTLLEFTDTSDSRFSASERETWADVLKPGVALGSCSGQCPEQMLAVHYNLENSLLSIVTANAERDSEAKRYYDQPDGGSSGLMVRNQLNLNGGQAQDLGGRFGLEASASLGNWSQSFNMQVARLGGPDDKTYHAVHELYTQRELQGSFFRLGYFTPNSEGLTRQPRAFGSSPDTAVGVMVGSSDSLAIDNPTPSVYPVYVTANRQGSVEIYRDGLLINTQAVPAGLQTLDTRSLPGGIYEVEVRLIEDGQITSTTQELIYKPNNWRNHDERWRYNLFAGQESKLLSNWEQQSNGGATAGASINYLLHPRVILGLSARQVQDTLQYGSSIDWTLGNNVSLYANLYQTRDHGTGADLQGLYTYGAGSLVVSHNRSWLDTTNLYDTLPDGTRVRQRNVFTGETSNSSLALNHRISRKSSLSARVSHSEGNVEGVGVDLGWTQRTELFGSDSNWRLSLFDRPGSYSSGDARNRGVDLSLNMALGGPGQQVSASIGSRTARDGSRDNNGSIGYRKNLQDHVLQSVSVTALTDTYGVGLSSLATFRTDAINGDGFVQRSSFNDKFTGGLNLDSTLVVGGQRLALTSQHQGRGAGMIVDVESDIEGIALRADDLSGGSAALRPGRNFIPLTAYKNSSVSFDFEGNHVPAASIEPARARYHLNKGGVEYRTVRVMKTLTVLGRLLDPQGRPLKGHHVINHASRGISEVDGFFSMEMKAASPTLEVRHADQLLCQFRVDIDQHRRENNVLMIGDLRCSPDTLADATHNVATAG
>NZ_CP015852.1|WP_099093354.1|4737876_4739091_-|hypothetical-protein
MKGVLLWAFASPVMGQVATITALFKPDSAHPHLNKFTNTTPPSGYCQSHPQQCEINRFFSLQVPIQFHSRAPILANHASGRQGPMFRVPAEWRDLTVIHEGTGAPQQVRIRIAGIGTRVVTDDVKKLVGGADDYQIAHNRLWGSSWVYAPAPCQFTGNGFYSPDFYEFFWRTPYAGVCAKQAKYDVPWMRYDYLDFAYELETPDPLKMASGKYTGSISYAVGPLGDFDFGDVMLPTDPMVTLDFSLDVQHTLKIDIPPGGEKFELVPAGGWQGWLQAGRKPVRLFRDQTFQISASSRFKMYIECKRWATLDCVIEDAAGRRAVELQVSVSLPNGLTDLAGQPVKHRRLQAGANNAQIFEPGFYVDSAPGVLHFEVPKNEVDWMLSASVASPYSGSVTVIWDSEI
>NZ_CP015852.1|WP_064589050.1|4751081_4753499_+|endopeptidase-La
MSDQQEFPDNPDDYTEAEHIEHTSSGKGLALPGQNLPDKVYVIPIHNRPFFPAQVLPVIVNEEPWAETLDLVSKSEHHSLALFFMDTPQEDPRHFNTGALPEYGTLVKVHHASRENGKLQFVAQGLSRVRIKTWLKHHRPPYLVEVEYPHQPTEPTDEVKAYGMALINAIKELLPLNPLYSEELKNYLNRFSPNDPSPLTDFAAALTSATGPELQEVLDCVPMLKRMEKVLPMLRKEVEVARLQKEISAEVNRKIGEHQREFFLKEQLKVIQQELGLTKDDRSADIEQFEQRLEGKVLSAQAQKRIEEEMHKLSILETGSPEYAVTRNYLDWATSVPWGVYGEDKLDLKHARKVLDKHHAGLDDIKDRILEFLAVGAYKGEISGSIVLLVGPPGVGKTSVGKSIAESLGRPFYRFSLGGMRDEAEIKGHRRTYIGAQPGKLVQALKDVEVMNPVIMLDEIDKMGQSYQGDPASALLETLDPEQNVEFLDHYLDLRMDLSKVLFVCTANTLDSIPGPLLDRMEVIRLSGYITEEKVAIAKRHLWPKLLEKAGVSKGSLSISDSALKALIDGYAREAGVRQLEKQMGKLVRKAVMKLIDDPKAVIKLGPKDLEASLGHPVFRNEQVLSGIGVITGLAWTSMGGATLPIEATRIHTLNRGFKLTGQLGDVMKESAEIAYSYVSSHLKAFGGDPKFFDEAFVHLHVPEGATPKDGPSAGVTMASALLSLARNQPPKKGVAMTGELTLTGHVLPIGGVREKVIAARRQKIFELILPEPNRGNFEELPDYLKEGITVHFAKKFADVAKVLF
>NZ_CP015852.1|WP_064589051.1|4753714_4754107_+|protease-inhibitor-I42-family-protein
MSPTRLFVPLALSLLAACATQPKQNVTVEKQSECPVRLTNGQTLIVMLPSNPTTGYRWAIQDSAGGVLRALSPEVYSSPKDAGMVGAGGFSTWRFQAFATGTGRLRLTSQQPWEPEVTPAETFDCAISVN
>NZ_CP015852.1|WP_064589052.1|4754103_4754745_+|lysoplasmalogenase
MIVGWLILALMGAVTFLYGVSTHAALLCLLVKPLPVLALLGWLHDAPPSDYRRWISLGLIFSLLGDVLLAWPGDLFVFGLGAFLVAHLAYLKAYLSDCKRLAVLPLVLALGVGAVLLGLLISSGLGPLLVPVIVYGTAISAMLWRALARLGTDVPKRSALLAAGGAVAFVFSDSVIGIDRFVSPFHAAPYVIILSYWLGQWGIAASAFSQKTR
>NZ_CP015852.1|WP_064590077.1|4754955_4755699_+|carboxy-S-adenosyl-L-methionine-synthase-CmoA
MSKEPDRIFAQPMAQVPDFAFNEDVVRVFPDMIKRSVPGYPTIVENLGVLAAQFAQPNSVLYDLGASLGAVTQALRRHVRTDGCRVIAVDNSAAMVERCREYLNGQDSMFQELLPVEVIEGDILALDFKPASVVALNFTLQFIAPEQRTALLSRIRQSLLPGGALILSEKLRFNDAEEHALLTDLHVAFKRANGYSELEIAQKRSAIENVMKPDSLEEHRERLLAAGFSKVVPWFQCLNFASLIALP
>NZ_CP015852.1|WP_064589053.1|4755695_4756652_+|tRNA-5-methoxyuridine(34)/uridine-5-oxyacetic-acid(34)-synthase-CmoB
MIDLSPLARRLAGTPLADWANTLQVQLDKKMEKGHGDLERWQSALDALPKLLPTEVDLLNGLTLDTECDDDTRAQMRTALMGLSPWRKGPFDLFGVHVDTEWRSDWKWSRVAPHLDLKGKRILDVGCGNGYYMWRMLGAGADSVIGVDPNWLFFCQFQAVQRYLSEPNAWHLPFPFEDLPPNLEGFDTVFSMGVFYHRRSPIEHLLALKDCLVKGGELVLETLVVEGDKHQVLVPEDRYAQMRNVWFLPSVPALELWLRRAGFSDIRCVDVSTTTVEEQRGTEWMKYQSLSDFLDPEDHSKTIEGLPAPMRAVIVARK
>NZ_CP015852.1|WP_064589054.1|4756782_4757280_-|nucleoside-deaminase
MRQIRPAAIIDRSRDRDFMREALALAAQGAALGEVPVGAVLVQDGEIIGRGFNCPISGSDPSAHAEMVAIRAAAQAVSNYRLPGSTLYVTLEPCSMCAGLIVHSRVARVVYGALEPKAGIVQSQGQFFTQGFLNHRVLYEGGVLAEECGAVLTEFFRARRAKPAE
>NZ_CP015852.1|WP_064589055.1|4757279_4758656_-|multicopper-oxidase-family-protein
MSFTRRQILGGLAGLVVVGVGAGGASRYWLGKVAEAEAGHDYELIAAPLDVELVPGHKTEAWAFGPSAPGTELRVRQGEWLRVRFINHLPVATTIHWHGIRLPLEMDGVPYVSQLPVLPGEYFDYKFRVPDAGSYWYHPHVSSSEELGRGLVGPLIVEEREPTGFKYEKTLSLKNWHIDEEGNFVEFSIPREAARGGTAGRLSTINGVPAPVIELPAGQITRVRLLNLDNTLTYRINIPGVEAQIYALDGNPVEPRPLGKEYWLGPGMRICLAIKAPPAGEELSLRNGPVRLGTLRSVANNDAPTEWPKALPANPVAEPDLANAEKLNFNFEWVGSVSVNVDNGKPPSLWQINGKAWDITDKTCADRPIASLKLGQSYIFELKNMTQYQHPIHLHGMSFKVIASNRHKIIPYFTDTYLLGKNERAQVALVADNPGVWMFHCHVIDHMETGLMAAIEVK
>NZ_CP015852.1|WP_064589056.1|4758844_4763635_+|hypothetical-protein
MNTHEARALPNAADKAALKAIASTVIKNCQSVQEAAHDVASDLLKKFGITGLDPDQVYYHRFDTAESRSKAFTGWEHVPATLRSTVTLTQLVVQRFRPSDQDNADLLDVYSGFYTAGPSAKRFNETNEVRLHGDEVLKAFWDINFSALYRERLTAFWQTSAADFRTLAKCNFLIEAVKARDKRQLSDEDFQFITEAVTGPLTWPVTLNMLQAEHACPSTVRAVDIDGHVATNLLRFVAPKGRQIIYLPGESSAFKVLETAVDMHYWVLQRMNTDAERKAFMTHFPLAERQTINDNLTDLMNRLVSTWGKYDHHLINGKNLIVDGDAFSWLRDSSKDAMFAEADLLLTSNGDLREKLWIGYLTAGIKVFGPMAVVGWPVALPVVGASIASLGLNIDQAVNAKTAQERKAGVLGAVFAGIDLLFNLLVLKGPGSLEEVGPELEAAEAQEMADLKQSSATAAPAEPVSAETVSESPEPVAEQTPIPQTFKIDTVLDDARLITEAGRFKGTYQLASNPSSAIRLDGNAYYVRYESDLNGRGTWAIIDPARPDAFSGSIPVRLNAAEQWEIAPQLGLRGGTIKPPTASVGSSSAPAVEAWARTPGIHVPGLEDPEMRAWALGGPDVRSLFRRVWAPGGIDVRNVLGLDPENLGARSVFMGPADESVQELSEFELAQEEPRRDLISDANAYYANHPPVPRQPLTSAPVITTPDALFDYAFAQKPGLVLGEGTGCIASKRFLIENMAALAQQNVKTLYLQELLANVNQLDLDTFARTGEMSEELQNYLNKLDLKARNDPEGRFNLLALVKAANAQRIRVQAIDMTTTWHINEGPITQSPQRQMSRSFFASEVIGFNQQLNGQGRWIALVNQENMTTFRGYQGITEQTDALCARFEDVAPGREQPLGSDPGLAVEYDDNPGSSVHEVVDGEIDLNSVQAPIKGDWRVQLPSVWAYRTAQELRSLLPEPGMFTLQRYRSNVLVVYRNANGAMADSVIRSTPGGRINLDTPLAPTYDSMTVDSLEELKQALIRKGMQPKGWPPAAGEAMSSVSPIESLAAASPQLEQSVIPANWEANELLENLSPDSTPGKFQGIYRLDSNPSTAIMLDDCAYYVRYESDANGGGVWAIIDPQQPNAFSGSIPVRLNAEGDWELAPRAGLKGGGNLQPRGSRPRAPAAPQRPPQAQASAVQASSRQPLQAQVSPELRGPTTSYDTPPRARVRQLAMGERETHLKVVHQPDGSLKGIPTFEEYVASHRADLSRDARQFMSREGLTRTLPARPPLADVATSTSASQLIQRVYEVAPGLVIGESQDRIASMQFLIENMQALAEQKVETLYFQRLLNDFNQVHLDKFFRSGEMTSDLEQYLRQLQSDPTGRFTPLEVVKAAQRNGIRVQATDCLASYRYPGAPLPDMHEQTIKTYLTHTIMQADKALNGGGKWVVLTDQQNTNTFRGIAGISELQGGIGLRVEEVLPANPALIETDRGIELGRGYASQPESLEGDSDTLYADMNLQTPLPLLTRTPKELERLLSRQGMFTFEKSEGTLTLLHRGRDGHIARTLVERTADGRYLINRPSWTEVHQVPYDTIVELSWGLSRMGMDLVGRLPL
>NZ_CP015852.1|WP_064589057.1|4763733_4765311_-|glutamine-hydrolyzing-GMP-synthase
MALDIHAHRILILDFGSQYTQLIARRVREIGVYCELHPFDMDEEAIREFAPKGVILAGGPESVHEANSPRCPQAVFDLGVPVFGICYGMQTMAEQLGGKVEGSELREFGYARVDVVGKSRLLDGIEDHIDADGLFGLDVWMSHGDKVTKMPQDFHILASTPSCPIAGMFNDERAYYGVQFHPEVTHTKQGGRILSRFVLDICGCEALWTPSKIAEDAIANIRAQVGTDNVLLGLSGGVDSSVVAALLHKAIGDQLTCVFVDNGLLRLHEGEQVMAMFAENMGVKVIRANAEEQFLNNLAGEADPEKKRKIIGRTFIDVFDAESCKLDNIKYLAQGTIYPDVIESAGAKSGKAHVIKSHHNVGGLPEEMNLKLVEPLRELFKDEVRRLGLELGLPYDMVYRHPFPGPGLGVRILGEVKKEYADLLRRADHIFIEELRKADWYHKVSQAFVVFQPVKSVGVVGDGRRYAWVVALRAVETIDFMTARWAHLPYELLETVSGRIINEIEGISRVTYDVSSKPPATIEWE
>NZ_CP015852.1|WP_064589058.1|4765411_4766881_-|IMP-dehydrogenase
MLRISQEALTFDDILLVPGYSEVLPNEVSLKTRLTRGIELNIPLVSAAMDTVTEARLAIAMAQEGGIGIIHKNMTIEQQAAEVRKVKKFEAGVVKDPITIEADATVRDLFELTRLHNISGVPVLHDGDLVGIVTSRDVRFENRLEATVREVMTPKERLVTVKEGADKNDVRELLHKHRIERVLIVDDKFALKGMMTVNDIEKAKAYPLASKDDQGRLRVGAAVGTGKDTGDRVAALVNAGVDVVVVDTAHGHSKGVIDRVRWVKENFPEVQVIGGNIATGAAAKALAEAGADAVKVGIGPGSICTTRIVAGVGVPQISAIANVAAALEGTGVPLIADGGIRFSGDLSKAIVAGASCVMMGSMFAGTEEAPGEIELFQGRSYKAYRGMGSLGAMSQAQGSSDRYFQDSSAGAEKLVPEGIEGRVPYKGTLSAIIHQLMGGLRSSMGYTGSANIEEMRTKPEFVRITGAGMAESHVHDVQITKEAPNYRVG

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_CP015852_4	4.1\|4750447\|38\|NZ_CP015852\|CRISPRCasFinder	4750447-4750484	38	NZ_CP015852.1	1081714-1081751	2	0.947
NZ_CP015852_4	4.1\|4750447\|38\|NZ_CP015852\|CRISPRCasFinder	4750447-4750484	38	NZ_CP015852.1	1081858-1081895	2	0.947
NZ_CP015852_4	4.1\|4750447\|38\|NZ_CP015852\|CRISPRCasFinder	4750447-4750484	38	NZ_CP015852.1	1423877-1423914	2	0.947

1. spacer 4.1|4750447|38|NZ_CP015852|CRISPRCasFinder matches to position: 1081714-1081751, mismatch: 2, identity: 0.947

attgggtgcgttcagctggagactggtcggctgtcagg	CRISPR spacer
attgggtgcattcagctggagattggtcggctgtcagg	Protospacer
*********.************.***************

2. spacer 4.1|4750447|38|NZ_CP015852|CRISPRCasFinder matches to position: 1081858-1081895, mismatch: 2, identity: 0.947

attgggtgcgttcagctggagactggtcggctgtcagg	CRISPR spacer
attgggtgcattcagttggagactggtcggctgtcagg	Protospacer
*********.*****.**********************

3. spacer 4.1|4750447|38|NZ_CP015852|CRISPRCasFinder matches to position: 1423877-1423914, mismatch: 2, identity: 0.947

attgggtgcgttcagctggagactggtcggctgtcagg	CRISPR spacer
attgggtgcgttcagttggagactgctcggctgtcagg	Protospacer
***************.********* ************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1252069 : 1361166

112

Pseudomonas_phage(47.27%)

plate,protease,tRNA,tail

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_064586172.1\|1252069_1252888_+\|tRNA	tRNA cyclic N6-threonylcarbamoyladenosine(37) synthase TcdA	S4VW33	Pandoravirus	2.3e-08	33.9
WP_064586173.1\|1253027_1253438_-	SufE family protein	NA	NA	NA	NA
WP_064586174.1\|1253434_1254640_-	cysteine desulfurase	Q2XUY6	environmental_halophage	2.3e-70	36.9
WP_064586175.1\|1254773_1255808_-	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase	NA	NA	NA	NA
WP_064586176.1\|1255841_1256204_-	ArsC family reductase	NA	NA	NA	NA
WP_064586177.1\|1256498_1258130_+	Na+/H+ antiporter	NA	NA	NA	NA
WP_064589960.1\|1258150_1258909_-	hypothetical protein	NA	NA	NA	NA
WP_064586178.1\|1258943_1259672_-	hypothetical protein	NA	NA	NA	NA
WP_064586179.1\|1259951_1261151_-	succinyldiaminopimelate transaminase	NA	NA	NA	NA
WP_064586180.1\|1261346_1264049_-	[protein-PII] uridylyltransferase	NA	NA	NA	NA
WP_064586181.1\|1264090_1264873_-	type I methionyl aminopeptidase	NA	NA	NA	NA
WP_003222119.1\|1265246_1265984_+	30S ribosomal protein S2	NA	NA	NA	NA
WP_064586182.1\|1266187_1267051_+	elongation factor Ts	NA	NA	NA	NA
WP_003222124.1\|1267261_1268005_+	UMP kinase	NA	NA	NA	NA
WP_008019552.1\|1268001_1268559_+	ribosome recycling factor	NA	NA	NA	NA
WP_064586183.1\|1268572_1269328_+	di-trans,poly-cis-decaprenylcistransferase	R9W0U9	Flavobacterium_phage	1.1e-17	38.1
WP_025110886.1\|1269327_1270134_+	hypothetical protein	NA	NA	NA	NA
WP_064586184.1\|1270130_1271321_+	1-deoxy-D-xylulose-5-phosphate reductoisomerase	NA	NA	NA	NA
WP_064586185.1\|1271375_1272728_+\|protease	sigma E protease regulator RseP	NA	NA	NA	NA
WP_064586186.1\|1272802_1275190_+	outer membrane protein assembly factor BamA	NA	NA	NA	NA
WP_003222140.1\|1275235_1275739_+	OmpH family outer membrane protein	NA	NA	NA	NA
WP_064586187.1\|1275742_1276798_+	UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase	NA	NA	NA	NA
WP_003222142.1\|1276904_1277345_+	3-hydroxyacyl-ACP dehydratase FabZ	NA	NA	NA	NA
WP_064586188.1\|1277341_1278118_+	acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase	NA	NA	NA	NA
WP_064586189.1\|1278120_1279248_+	lipid-A-disaccharide synthase	NA	NA	NA	NA
WP_064586190.1\|1279259_1279886_+	ribonuclease HII	V5LS49	Emiliania_huxleyi_virus	1.3e-27	39.5
WP_064586191.1\|1279962_1283484_+	DNA polymerase III subunit alpha	A0A1C9LWZ5	Streptomyces_phage	3.5e-199	37.0
WP_064586192.1\|1283623_1284571_+	acetyl-CoA carboxylase carboxyltransferase subunit alpha	NA	NA	NA	NA
WP_064586193.1\|1284702_1286031_+\|tRNA	tRNA lysidine(34) synthetase TilS	A7IXR9	Paramecium_bursaria_Chlorella_virus	5.0e-05	23.5
WP_064586194.1\|1286305_1287937_+	CTP synthase	A0A1J0FA14	Only_Syngen_Nebraska_virus	3.1e-158	53.5
WP_007954807.1\|1287943_1288789_+	3-deoxy-8-phosphooctulonate synthase	E3T537	Cafeteria_roenbergensis_virus	6.1e-49	42.4
WP_064586195.1\|1288945_1290235_+	phosphopyruvate hydratase	A0A1X9I5Z8	Streptococcus_phage	6.9e-137	59.2
WP_007964293.1\|1290406_1290685_+	cell division protein FtsB	NA	NA	NA	NA
WP_064586196.1\|1290681_1291389_+	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	NA	NA	NA	NA
WP_064586197.1\|1291506_1292403_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_007908835.1\|1292519_1293632_+	S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase	E3SJ82	Synechococcus_phage	6.2e-33	29.8
WP_064586198.1\|1293697_1294543_+	S-formylglutathione hydrolase	NA	NA	NA	NA
WP_007907189.1\|1294597_1295071_+	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	NA	NA	NA	NA
WP_064586199.1\|1295067_1296126_+\|tRNA	tRNA pseudouridine(13) synthase TruD	NA	NA	NA	NA
WP_064586200.1\|1296113_1296863_+	5'/3'-nucleotidase SurE	A0A1B1ITZ2	uncultured_Mediterranean_phage	4.4e-67	52.2
WP_041072304.1\|1296862_1297540_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	1.8e-43	49.8
WP_064586201.1\|1297752_1298631_+	peptidoglycan DD-metalloendopeptidase family protein	A0A0S2SXL7	Bacillus_phage	6.6e-06	33.3
WP_038357938.1\|1298736_1299747_+	RNA polymerase sigma factor RpoS	G8CLC7	Synechococcus_phage	5.1e-34	35.8
WP_003222178.1\|1300368_1300692_-	ferredoxin family protein	NA	NA	NA	NA
WP_064586202.1\|1300855_1303438_-	DNA mismatch repair protein MutS	A0A1V0SJ67	Klosneuvirus	8.1e-28	22.1
WP_047291917.1\|1303648_1304383_+	helix-turn-helix transcriptional regulator	B5TK58	Pseudomonas_phage	6.7e-129	93.0
WP_011332709.1\|1304905_1305244_+	pyocin	B5TK61	Pseudomonas_phage	9.8e-51	87.5
WP_064586203.1\|1305314_1305836_+	hypothetical protein	NA	NA	NA	NA
WP_064586204.1\|1305837_1306446_+\|plate	phage baseplate assembly protein V	A0A2H4JBW8	uncultured_Caudovirales_phage	1.3e-40	56.2
WP_003222189.1\|1306460_1306793_+\|plate	phage baseplate protein	A0A2H4JI46	uncultured_Caudovirales_phage	1.4e-36	69.1
WP_064586205.1\|1306789_1307785_+\|plate	baseplate J protein	A0A2H4JC04	uncultured_Caudovirales_phage	4.3e-110	63.5
WP_064586206.1\|1307781_1308435_+\|tail	phage tail protein I	A0A2H4JDK0	uncultured_Caudovirales_phage	1.7e-38	50.3
WP_064586207.1\|1308504_1309035_+	hypothetical protein	A2I2X8	Vibrio_virus	1.3e-49	60.7
WP_064586208.1\|1309115_1309736_+	hypothetical protein	NA	NA	NA	NA
WP_064589961.1\|1309796_1310003_+	hypothetical protein	NA	NA	NA	NA
WP_064586209.1\|1310089_1310275_+	hypothetical protein	NA	NA	NA	NA
WP_064586210.1\|1310277_1311444_+	hypothetical protein	B0ZSG8	Halomonas_phage	1.2e-124	57.2
WP_064586211.1\|1311443_1311950_+\|tail	phage tail protein	Q6R4W3	Vibrio_virus	6.2e-25	36.9
WP_064586212.1\|1312104_1312686_+\|tail	phage tail assembly protein	B0ZSH0	Halomonas_phage	1.1e-25	37.5
WP_064586213.1\|1312814_1315064_+\|tail	phage tail tape measure protein	NA	NA	NA	NA
WP_064586214.1\|1315063_1315447_+\|tail	phage tail protein	B0ZSH2	Halomonas_phage	3.1e-32	54.4
WP_064586215.1\|1315439_1315652_+\|tail	phage tail protein	A0A2H4JGD9	uncultured_Caudovirales_phage	1.3e-19	65.7
WP_064586216.1\|1315661_1316690_+	hypothetical protein	B0ZSH3	Halomonas_phage	6.4e-101	53.6
WP_064586217.1\|1316840_1317425_+	hypothetical protein	B5TK65	Pseudomonas_phage	4.4e-83	77.3
WP_041072263.1\|1317421_1317604_+	DUF2635 domain-containing protein	B5TK66	Pseudomonas_phage	1.8e-22	86.7
WP_064586218.1\|1317603_1319100_+\|tail	phage tail protein	B5TK67	Pseudomonas_phage	2.8e-262	92.4
WP_003222224.1\|1319167_1319515_+\|tail	phage tail protein	B5TK68	Pseudomonas_phage	7.2e-57	91.3
WP_003222226.1\|1319511_1319808_+\|tail	phage tail assembly protein	B5TK69	Pseudomonas_phage	2.8e-41	90.8
WP_064586219.1\|1319938_1321837_+	hypothetical protein	B5TK70	Pseudomonas_phage	1.3e-67	56.3
WP_064586220.1\|1321823_1323059_+	hydroxyacid dehydrogenase	B5TK71	Pseudomonas_phage	9.9e-149	66.5
WP_064586221.1\|1323062_1324112_+	hypothetical protein	B5TK72	Pseudomonas_phage	1.4e-156	79.1
WP_064586222.1\|1324248_1324758_+\|plate	phage baseplate assembly protein	B5TK73	Pseudomonas_phage	1.7e-78	87.6
WP_054047083.1\|1324757_1325156_+	hypothetical protein	B5TK74	Pseudomonas_phage	5.5e-69	95.5
WP_064586223.1\|1325145_1326192_+\|plate	baseplate J/gp47 family protein	B5TK75	Pseudomonas_phage	1.9e-153	80.9
WP_064586224.1\|1326179_1326779_+	DUF2313 domain-containing protein	B5TK76	Pseudomonas_phage	6.8e-103	89.4
WP_064586225.1\|1326793_1327672_+	hypothetical protein	B5TK81	Pseudomonas_phage	4.4e-34	37.8
WP_064586226.1\|1327684_1328104_+	hypothetical protein	NA	NA	NA	NA
WP_064586227.1\|1328174_1329326_+	hypothetical protein	B5TK77	Pseudomonas_phage	3.3e-154	70.4
WP_064586228.1\|1329322_1329838_+	hypothetical protein	B5TK78	Pseudomonas_phage	1.1e-48	63.0
WP_064586229.1\|1329974_1331015_+	hypothetical protein	B5TK79	Pseudomonas_phage	4.8e-104	54.9
WP_064586230.1\|1331058_1331640_+\|tail	phage tail protein	B5TK80	Pseudomonas_phage	5.3e-36	40.1
WP_064586231.1\|1331721_1332645_+	hypothetical protein	B5TK77	Pseudomonas_phage	4.5e-21	74.2
WP_064586232.1\|1332644_1333112_+	hypothetical protein	NA	NA	NA	NA
WP_064586233.1\|1333153_1334050_+	hypothetical protein	B5TK81	Pseudomonas_phage	3.6e-60	45.9
WP_064586235.1\|1334050_1334497_+	hypothetical protein	B5TK82	Pseudomonas_phage	3.6e-24	42.4
WP_064586237.1\|1334515_1335673_+	hypothetical protein	B5TK77	Pseudomonas_phage	1.1e-19	49.6
WP_064586239.1\|1335672_1335927_+	hypothetical protein	NA	NA	NA	NA
WP_064586240.1\|1335960_1336527_+	glycoside hydrolase family 19 protein	B5TK83	Pseudomonas_phage	4.3e-83	80.3
WP_064586242.1\|1336505_1337024_+	lysozyme	B5TK84	Pseudomonas_phage	2.6e-58	72.4
WP_064589962.1\|1337091_1337592_+	CinA family protein	B5TK85	Pseudomonas_phage	2.7e-73	86.1
WP_064586244.1\|1337675_1338734_+	recombinase RecA	A0A0S2MVG1	Bacillus_phage	1.7e-109	61.8
WP_064586245.1\|1338743_1339211_+	recombination regulator RecX	NA	NA	NA	NA
WP_064586247.1\|1339266_1340385_-	TIGR00730 family Rossman fold protein	NA	NA	NA	NA
WP_007964369.1\|1340745_1340940_+	hypothetical protein	NA	NA	NA	NA
WP_064586249.1\|1340940_1341366_-	hypothetical protein	NA	NA	NA	NA
WP_064586251.1\|1341552_1342302_+	DTW domain-containing protein	NA	NA	NA	NA
WP_064586253.1\|1342525_1343176_+	response regulator transcription factor	NA	NA	NA	NA
WP_003222276.1\|1343250_1343613_+	diacylglycerol kinase	NA	NA	NA	NA
WP_064586255.1\|1343609_1344536_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_003222277.1\|1344669_1345449_+	ferredoxin--NADP reductase	NA	NA	NA	NA
WP_064586257.1\|1345619_1346318_-\|tRNA	tRNA (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase TrmO	NA	NA	NA	NA
WP_064586259.1\|1346327_1346795_-	DUF1456 family protein	Q9EYF4	Enterobacteria_phage	2.7e-38	52.0
WP_064586261.1\|1346867_1347578_-	RNA-binding protein	NA	NA	NA	NA
WP_064586262.1\|1347734_1348208_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_064586269.1\|1348411_1349749_-	30S ribosomal protein S12 methylthiotransferase RimO	NA	NA	NA	NA
WP_064586271.1\|1350039_1351941_+	potassium transporter Kup	M1HZV6	Acanthocystis_turfacea_Chlorella_virus	2.2e-75	34.3
WP_082920286.1\|1352101_1352341_-	DUF3077 domain-containing protein	NA	NA	NA	NA
WP_064586275.1\|1352467_1353760_-	virulence factor family protein	NA	NA	NA	NA
WP_064586277.1\|1353759_1356399_-	bifunctional lysylphosphatidylglycerol flippase/synthetase MprF	NA	NA	NA	NA
WP_064586279.1\|1357332_1358394_+	DNA polymerase IV	NA	NA	NA	NA
WP_064586281.1\|1358479_1359433_-	hypothetical protein	NA	NA	NA	NA
WP_064586282.1\|1359450_1361166_-\|tRNA	proline--tRNA ligase	NA	NA	NA	NA

DBSCAN-SWA_2

2214300 : 2267805

Moraxella_phage(25.0%)

coat,protease,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_064586910.1\|2214300_2215644_-\|tRNA	tRNA 5-hydroxyuridine modification protein YegQ	Q6DW11	Phage_TP	4.7e-152	70.6
WP_064586911.1\|2215849_2216536_+	isochorismatase family protein	NA	NA	NA	NA
WP_064586912.1\|2216646_2217708_+	AI-2E family transporter	NA	NA	NA	NA
WP_064586913.1\|2217704_2217887_-	hypothetical protein	NA	NA	NA	NA
WP_025108897.1\|2217989_2218184_-	hypothetical protein	NA	NA	NA	NA
WP_025108898.1\|2218413_2218758_-	hypothetical protein	NA	NA	NA	NA
WP_064586914.1\|2219014_2219833_+	shikimate 5-dehydrogenase	NA	NA	NA	NA
WP_064586915.1\|2220041_2220560_+	cupin domain-containing protein	NA	NA	NA	NA
WP_064586916.1\|2220793_2221438_-	DUF480 domain-containing protein	NA	NA	NA	NA
WP_064586917.1\|2221563_2222073_+	DUF1993 domain-containing protein	NA	NA	NA	NA
WP_064586918.1\|2222228_2223461_-	serine/threonine transporter SstT	NA	NA	NA	NA
WP_064586919.1\|2223796_2224960_+	MFS transporter	NA	NA	NA	NA
WP_064586920.1\|2224954_2225854_-	transcriptional activator NhaR	NA	NA	NA	NA
WP_064586921.1\|2226081_2226324_+	hypothetical protein	NA	NA	NA	NA
WP_064586922.1\|2226353_2227103_+	TerC family protein	A0A0R6PEZ3	Moraxella_phage	3.0e-39	39.2
WP_064586923.1\|2227671_2228343_+	hypothetical protein	NA	NA	NA	NA
WP_007965370.1\|2228431_2228638_+	hypothetical protein	NA	NA	NA	NA
WP_064586924.1\|2228650_2228857_+	hypothetical protein	NA	NA	NA	NA
WP_064586925.1\|2228989_2229928_-	D-alanyl-D-alanine endopeptidase	NA	NA	NA	NA
WP_003223627.1\|2230158_2231013_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	A0A249XZQ2	Enterococcus_phage	4.1e-29	33.2
WP_064586926.1\|2232168_2233479_+	trigger factor	NA	NA	NA	NA
WP_007951559.1\|2233571_2234207_+	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	A0A223W000	Agrobacterium_phage	1.0e-61	61.1
WP_003223632.1\|2234319_2235603_+\|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	G3M9Z9	Bacillus_virus	2.8e-138	59.6
WP_064586927.1\|2235766_2238163_+	endopeptidase La	A0A0R6PGP8	Moraxella_phage	1.3e-221	52.0
WP_008077714.1\|2238311_2238584_+	HU family DNA-binding protein	A7KV42	Bacillus_phage	3.0e-18	57.3
WP_064586929.1\|2238820_2240692_+	peptidylprolyl isomerase	NA	NA	NA	NA
WP_064586930.1\|2241117_2242014_+	DUF2242 domain-containing protein	NA	NA	NA	NA
WP_064586931.1\|2242334_2243375_-	AraC family transcriptional regulator	NA	NA	NA	NA
WP_064586932.1\|2243378_2244509_-	carbon-nitrogen hydrolase	NA	NA	NA	NA
WP_064586933.1\|2244714_2246754_+	NADPH-dependent 2,4-dienoyl-CoA reductase	NA	NA	NA	NA
WP_064586934.1\|2246894_2247821_+	pyridoxal-phosphate dependent enzyme	NA	NA	NA	NA
WP_064586935.1\|2247982_2248531_-	cytochrome b	A0A0U2QLA7	Escherichia_phage	5.2e-17	40.6
WP_064586936.1\|2248724_2249552_-	phosphonoacetaldehyde hydrolase	NA	NA	NA	NA
WP_064586937.1\|2249693_2250803_-	2-aminoethylphosphonate--pyruvate transaminase	NA	NA	NA	NA
WP_064586938.1\|2250915_2251776_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_064586939.1\|2251882_2252755_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_064586940.1\|2253023_2254349_+	MFS transporter	NA	NA	NA	NA
WP_064586941.1\|2254420_2255812_+	FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_064586942.1\|2255815_2257204_-	type VI secretion system tip protein VgrG	NA	NA	NA	NA
WP_064586943.1\|2257425_2258130_+	YebC/PmpR family DNA-binding transcriptional regulator	NA	NA	NA	NA
WP_064586944.1\|2258253_2259567_-	serine/threonine-protein kinase	NA	NA	NA	NA
WP_064586945.1\|2259780_2260902_-	cell division protein ZapE	NA	NA	NA	NA
WP_064586946.1\|2261188_2261710_+\|coat	spore coat protein U domain-containing protein	NA	NA	NA	NA
WP_064586947.1\|2261815_2262349_+\|coat	spore coat protein U domain-containing protein	NA	NA	NA	NA
WP_027614606.1\|2262369_2262906_+\|coat	spore coat protein U domain-containing protein	NA	NA	NA	NA
WP_064586948.1\|2262910_2263411_+\|coat	spore coat protein U domain-containing protein	NA	NA	NA	NA
WP_064586949.1\|2263445_2264234_+	molecular chaperone	NA	NA	NA	NA
WP_064586950.1\|2264479_2266837_+	fimbrial biogenesis outer membrane usher protein	NA	NA	NA	NA
WP_099093348.1\|2266866_2267805_+\|coat	spore coat protein U domain-containing protein	NA	NA	NA	NA

DBSCAN-SWA_3

2368101 : 2374339

uncultured_Caudovirales_phage(83.33%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_064587014.1\|2368101_2369382_+\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	3.1e-97	53.6
WP_064587015.1\|2369382_2370777_+	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA
WP_064587016.1\|2370872_2371874_-	glutathione S-transferase family protein	NA	NA	NA	NA
WP_064587017.1\|2371965_2372967_-	glycosyl transferase family protein	A0A2H4JBY5	uncultured_Caudovirales_phage	7.0e-161	83.8
WP_064587018.1\|2372963_2373299_-	TusE/DsrC/DsvC family sulfur relay protein	A0A2H4J8B6	uncultured_Caudovirales_phage	8.3e-42	74.8
WP_064587019.1\|2373295_2373589_-	sulfurtransferase complex subunit TusB	A0A2H4JG28	uncultured_Caudovirales_phage	4.0e-32	70.7
WP_064587020.1\|2373588_2373945_-	sulfurtransferase complex subunit TusC	A0A2H4J8C0	uncultured_Caudovirales_phage	2.2e-37	66.7
WP_064589977.1\|2373946_2374339_-	sulfurtransferase complex subunit TusD	A0A2H4JA39	uncultured_Caudovirales_phage	1.0e-51	76.7

DBSCAN-SWA_4

3746601 : 3792900

Pseudomonas_phage(57.78%)

head,bacteriocin,tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_064588207.1\|3746601_3747108_-	lysozyme	B5TK84	Pseudomonas_phage	2.7e-52	67.3
WP_064588208.1\|3747107_3747530_-	cell wall hydrolase	A0A2D1GNI1	Pseudomonas_phage	7.0e-62	76.6
WP_082920332.1\|3747589_3748306_-	hypothetical protein	A0A059VFX9	Pseudomonas_phage	3.9e-49	46.8
WP_157772064.1\|3748305_3748890_-	hypothetical protein	A0A2H4J2B7	uncultured_Caudovirales_phage	2.8e-29	39.4
WP_064588210.1\|3748917_3749580_-	hypothetical protein	A0A059VF40	Pseudomonas_phage	1.5e-98	75.9
WP_064588211.1\|3749576_3749945_-	hypothetical protein	A0A059VJS9	Pseudomonas_phage	5.0e-48	73.0
WP_064588212.1\|3749941_3752884_-	DUF1983 domain-containing protein	A0A059VFW9	Pseudomonas_phage	0.0e+00	67.9
WP_064588213.1\|3752880_3753279_-	hypothetical protein	A0A059VK01	Pseudomonas_phage	3.8e-62	81.8
WP_064588214.1\|3753281_3753884_-	hypothetical protein	A0A059VA31	Pseudomonas_phage	5.9e-107	93.5
WP_064588215.1\|3753883_3754468_-	hypothetical protein	A0A059VJR9	Pseudomonas_phage	1.7e-90	86.1
WP_064588216.1\|3754497_3754797_-	hypothetical protein	NA	NA	NA	NA
WP_064588217.1\|3754793_3757679_-\|tail	phage tail tape measure protein	A0A2H4J7J3	uncultured_Caudovirales_phage	1.4e-124	38.8
WP_064588218.1\|3757741_3758311_-	hypothetical protein	I6PDJ9	Cronobacter_phage	7.3e-14	46.1
WP_064588219.1\|3758401_3759265_-	antirepressor	C8CLH5	Xylella_phage	3.3e-18	45.9
WP_082920333.1\|3759332_3759497_-	Arc family DNA-binding protein	NA	NA	NA	NA
WP_064588220.1\|3759612_3760062_+	helix-turn-helix domain-containing protein	H7BUW5	unidentified_phage	3.7e-05	41.2
WP_064588221.1\|3760236_3760461_+	hypothetical protein	NA	NA	NA	NA
WP_064588222.1\|3760580_3760835_+	hypothetical protein	NA	NA	NA	NA
WP_064588223.1\|3760967_3761531_-	hypothetical protein	NA	NA	NA	NA
WP_064588225.1\|3762066_3762306_-	hypothetical protein	A0A059VJS3	Pseudomonas_phage	7.7e-26	67.5
WP_064588226.1\|3762308_3762794_-	hypothetical protein	A0A059VF34	Pseudomonas_phage	3.6e-38	50.0
WP_064588227.1\|3762872_3764033_-	Ig domain-containing protein	A0A059VG08	Pseudomonas_phage	1.6e-153	90.6
WP_064588228.1\|3764096_3764492_-	hypothetical protein	A0A059VK45	Pseudomonas_phage	7.0e-56	77.9
WP_064588229.1\|3764488_3765064_-	hypothetical protein	A0A1B0VMI1	Pseudomonas_phage	6.2e-29	39.1
WP_064588230.1\|3765063_3765423_-	hypothetical protein	A0A0S2SYG4	Pseudomonas_phage	9.5e-20	46.2
WP_064588231.1\|3765426_3765816_-	hypothetical protein	A0A0S2SYB7	Pseudomonas_phage	2.9e-14	43.2
WP_064588232.1\|3765856_3766441_-	hypothetical protein	A0A1B0VMF7	Pseudomonas_phage	8.6e-10	32.7
WP_064588233.1\|3766491_3767460_-	hypothetical protein	R9TJ64	Synechococcus_phage	3.1e-113	66.0
WP_064588234.1\|3768267_3768642_-	hypothetical protein	NA	NA	NA	NA
WP_064588235.1\|3768690_3769734_-\|head	phage head morphogenesis protein	A0A1B0VMF3	Pseudomonas_phage	1.2e-46	34.1
WP_064588236.1\|3769723_3771142_-	DUF4055 domain-containing protein	A0A2H4J5M6	uncultured_Caudovirales_phage	6.8e-69	35.1
WP_064588237.1\|3771150_3772638_-	hypothetical protein	A0A2H4J2I1	uncultured_Caudovirales_phage	1.7e-259	86.7
WP_064588238.1\|3772639_3773161_-	hypothetical protein	A0A0H5AUE2	Pseudomonas_phage	1.6e-63	73.1
WP_064588239.1\|3773240_3773594_+	hypothetical protein	NA	NA	NA	NA
WP_064588240.1\|3773649_3774090_-	hypothetical protein	A0A1B0VNC4	Pseudomonas_phage	1.2e-40	57.9
WP_064588241.1\|3774255_3774444_-	hypothetical protein	NA	NA	NA	NA
WP_064588242.1\|3774440_3774662_-	hypothetical protein	A0A2H4JFZ5	uncultured_Caudovirales_phage	4.2e-18	62.0
WP_064588243.1\|3774715_3775063_-	hypothetical protein	A0A193GYR7	Enterobacter_phage	2.5e-09	41.1
WP_064590033.1\|3775059_3775386_-	hypothetical protein	A0A088FVG2	Escherichia_phage	4.8e-18	45.8
WP_064588244.1\|3775623_3776481_-\|bacteriocin	putidacin L1 family lectin-like bacteriocin	NA	NA	NA	NA
WP_082920386.1\|3776528_3776675_-	Com family DNA-binding transcriptional regulator	B5TK59	Pseudomonas_phage	1.5e-11	86.8
WP_064588245.1\|3777111_3777351_-	hypothetical protein	NA	NA	NA	NA
WP_064588246.1\|3777524_3778220_-	hypothetical protein	A0A1B0YZZ3	Pseudomonas_phage	2.6e-61	56.3
WP_064588247.1\|3778216_3778867_-	hypothetical protein	A0A1B0VME4	Pseudomonas_phage	3.7e-86	78.7
WP_064588248.1\|3778866_3779268_-	NinB family protein	A0A059VG13	Pseudomonas_phage	5.2e-59	80.8
WP_064588249.1\|3779264_3779489_-	hypothetical protein	NA	NA	NA	NA
WP_064588250.1\|3779490_3780297_-	AAA family ATPase	A0A2H4J3E5	uncultured_Caudovirales_phage	4.7e-107	70.8
WP_099093351.1\|3781068_3781785_-	phage antirepressor protein	F1C5A3	Cronobacter_phage	7.2e-35	44.0
WP_064588254.1\|3782197_3782413_-	hypothetical protein	NA	NA	NA	NA
WP_064588255.1\|3782444_3782684_-	hypothetical protein	A0A2H4J0V8	uncultured_Caudovirales_phage	3.0e-22	68.4
WP_064588256.1\|3782767_3783508_+	helix-turn-helix transcriptional regulator	A0A2H4J0J9	uncultured_Caudovirales_phage	3.7e-82	60.8
WP_082920335.1\|3783534_3783846_+	hypothetical protein	NA	NA	NA	NA
WP_064588257.1\|3783879_3784707_-	hypothetical protein	NA	NA	NA	NA
WP_064590035.1\|3785179_3785377_+	hypothetical protein	A0A2H4JG89	uncultured_Caudovirales_phage	3.7e-18	77.0
WP_064588258.1\|3785476_3785824_-	hypothetical protein	NA	NA	NA	NA
WP_064588259.1\|3786017_3786422_+	hypothetical protein	NA	NA	NA	NA
WP_007965048.1\|3786418_3786610_+	hypothetical protein	A0A1B0VMB8	Pseudomonas_phage	1.8e-09	49.2
WP_064588260.1\|3786606_3786801_+	hypothetical protein	NA	NA	NA	NA
WP_064588261.1\|3786925_3787435_+	hypothetical protein	J7I0S8	Pseudomonas_phage	1.6e-41	56.5
WP_064588262.1\|3787490_3788297_+	phage recombination protein Bet	U6C6J0	Ralstonia_phage	1.5e-68	52.1
WP_064588263.1\|3788293_3789913_+	Heme peroxidase	A0A2H4J6F0	uncultured_Caudovirales_phage	1.2e-183	70.0
WP_064588264.1\|3790028_3791150_-	hypothetical protein	NA	NA	NA	NA
WP_064588265.1\|3791333_3791735_+	hypothetical protein	NA	NA	NA	NA
WP_064588266.1\|3791713_3791941_-	hypothetical protein	NA	NA	NA	NA
WP_064588268.1\|3792045_3792900_+	DNA adenine methylase	R4JMC6	Burkholderia_phage	4.0e-72	51.1

DBSCAN-SWA_5

5417535 : 5471110

Burkholderia_phage(33.33%)

transposase,protease,holin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_064585503.1\|5417535_5418369_-\|transposase	IS3 family transposase	Q716C2	Shigella_phage	4.7e-46	39.1
WP_007969000.1\|5418365_5418662_-\|transposase	transposase	A9YX41	Burkholderia_phage	6.7e-11	46.7
WP_064589546.1\|5418788_5420207_-	two-component system sensor histidine kinase CreC	NA	NA	NA	NA
WP_064590119.1\|5420206_5420887_-	two-component system response regulator CreB	W8CYM9	Bacillus_phage	1.6e-28	35.6
WP_007962587.1\|5420955_5421459_-\|protease	ATP-dependent zinc protease	NA	NA	NA	NA
WP_064589547.1\|5421792_5422680_+	acyltransferase	NA	NA	NA	NA
WP_064589548.1\|5422681_5423239_-	DUF2780 domain-containing protein	NA	NA	NA	NA
WP_064589549.1\|5423387_5424023_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA
WP_064589550.1\|5424019_5424694_+	anti-sigma factor	NA	NA	NA	NA
WP_064589551.1\|5424912_5426112_-	formaldehyde dehydrogenase, glutathione-independent	A0A2K9L7I1	Tupanvirus	1.1e-11	29.7
WP_064589552.1\|5426316_5427174_-	formyltetrahydrofolate deformylase	NA	NA	NA	NA
WP_064589553.1\|5427373_5428006_-	sarcosine oxidase subunit gamma family protein	NA	NA	NA	NA
WP_064589554.1\|5428149_5431167_-	sarcosine oxidase subunit alpha	NA	NA	NA	NA
WP_064589555.1\|5431163_5431493_-	sarcosine oxidase subunit delta	NA	NA	NA	NA
WP_003206307.1\|5431507_5432758_-	sarcosine oxidase subunit beta	NA	NA	NA	NA
WP_027610662.1\|5432778_5434032_-	serine hydroxymethyltransferase	A0A240F3L3	Aeromonas_phage	4.1e-102	53.0
WP_064589556.1\|5434281_5435001_-	conjugal transfer protein TraX	NA	NA	NA	NA
WP_064589557.1\|5435127_5436168_+	low specificity L-threonine aldolase	NA	NA	NA	NA
WP_064589558.1\|5436447_5437272_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA
WP_064589559.1\|5437380_5438481_-	glycine-betaine demethylase subunit GbcB	NA	NA	NA	NA
WP_064589560.1\|5438765_5440061_+	glycine-betaine demethylase subunit GbcA	NA	NA	NA	NA
WP_064589561.1\|5440130_5440418_-	hypothetical protein	NA	NA	NA	NA
WP_064589562.1\|5440446_5441073_-	hypothetical protein	NA	NA	NA	NA
WP_064589563.1\|5441599_5442844_-	hypothetical protein	NA	NA	NA	NA
WP_064589564.1\|5442869_5444738_-	hypothetical protein	NA	NA	NA	NA
WP_064589565.1\|5444935_5448388_-	FAD-binding protein	NA	NA	NA	NA
WP_064589566.1\|5449437_5450208_-	electron transfer flavoprotein subunit beta	NA	NA	NA	NA
WP_064589567.1\|5450223_5451444_-	electron transfer flavoprotein subunit alpha/FixB family protein	NA	NA	NA	NA
WP_064589568.1\|5451443_5453393_-	dimethylglycine demethylation protein DgcB	NA	NA	NA	NA
WP_064589569.1\|5453592_5455653_-	dimethylglycine demethylation protein DgcA	NA	NA	NA	NA
WP_064589570.1\|5455668_5456199_-	hypothetical protein	NA	NA	NA	NA
WP_007962626.1\|5456277_5457255_-	membrane dipeptidase	NA	NA	NA	NA
WP_047596500.1\|5457488_5457890_+	DUF1311 domain-containing protein	NA	NA	NA	NA
WP_064589571.1\|5457993_5458317_+	helix-turn-helix domain-containing protein	A0A1S5NNJ5	Burkholderia_phage	6.3e-31	66.7
WP_064589572.1\|5458345_5458762_+	DUF3010 family protein	NA	NA	NA	NA
WP_025108540.1\|5458884_5459829_-	GlxA family transcriptional regulator	NA	NA	NA	NA
WP_064589573.1\|5460036_5460981_+\|holin	choline ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_039768000.1\|5461088_5461976_+	3-keto-5-aminohexanoate cleavage protein	NA	NA	NA	NA
WP_064589574.1\|5462134_5463100_+	L-carnitine dehydrogenase	NA	NA	NA	NA
WP_064589575.1\|5463279_5463756_+	4-hydroxybenzoyl-CoA thioesterase	NA	NA	NA	NA
WP_064589576.1\|5463780_5464944_+	gamma-butyrobetaine dioxygenase	NA	NA	NA	NA
WP_064589577.1\|5465313_5465577_+	hypothetical protein	NA	NA	NA	NA
WP_064589578.1\|5465730_5466834_-	GlxA family transcriptional regulator	NA	NA	NA	NA
WP_064589579.1\|5467437_5468814_-	L-serine ammonia-lyase	NA	NA	NA	NA
WP_064589580.1\|5469250_5470198_+\|holin	choline ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_007962645.1\|5470264_5471110_+\|holin	choline ABC transporter permease subunit	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP015852

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CRISPR-Cas detection and classification

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Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection