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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP015645 Staphylococcus aureus strain 08-02119 chromosome, complete genome 7 crisprs csa3,cas3,DEDDh,DinG,WYL 3 1 11 1

Results visualization

1. NZ_CP015645
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP015645_1 388273-388354 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP015645_2 474407-474492 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP015645_3 1035197-1035498 Orphan NA
5 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP015645_4 1143944-1144036 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP015645_5 1276862-1276943 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP015645_6 1404671-1404753 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP015645_7 2523063-2523160 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
NZ_CP015645_3 3.1|1035215|38|NZ_CP015645|CRT 1035215-1035252 38 NZ_CP015645.1 1458323-1458360 1 0.974
NZ_CP015645_2 2.1|474434|32|NZ_CP015645|CRISPRCasFinder 474434-474465 32 NZ_CP015645.1 330711-330742 2 0.938
NZ_CP015645_2 2.1|474434|32|NZ_CP015645|CRISPRCasFinder 474434-474465 32 NZ_CP015645.1 735315-735346 2 0.938
NZ_CP015645_2 2.1|474434|32|NZ_CP015645|CRISPRCasFinder 474434-474465 32 NZ_CP015645.1 822906-822937 2 0.938
NZ_CP015645_2 2.1|474434|32|NZ_CP015645|CRISPRCasFinder 474434-474465 32 NZ_CP015645.1 947423-947454 2 0.938
NZ_CP015645_2 2.1|474434|32|NZ_CP015645|CRISPRCasFinder 474434-474465 32 NZ_CP015645.1 1031348-1031379 2 0.938
NZ_CP015645_2 2.1|474434|32|NZ_CP015645|CRISPRCasFinder 474434-474465 32 NZ_CP015645.1 1861916-1861947 2 0.938
NZ_CP015645_2 2.1|474434|32|NZ_CP015645|CRISPRCasFinder 474434-474465 32 NZ_CP015645.1 1959371-1959402 2 0.938
NZ_CP015645_3 3.1|1035215|38|NZ_CP015645|CRT 1035215-1035252 38 NZ_CP015645.1 1458379-1458416 2 0.947
NZ_CP015645_6 6.1|1404697|31|NZ_CP015645|CRISPRCasFinder 1404697-1404727 31 NZ_CP015645.1 330841-330871 2 0.935
NZ_CP015645_6 6.1|1404697|31|NZ_CP015645|CRISPRCasFinder 1404697-1404727 31 NZ_CP015645.1 1134014-1134044 2 0.935
NZ_CP015645_6 6.1|1404697|31|NZ_CP015645|CRISPRCasFinder 1404697-1404727 31 NZ_CP015645.1 1861818-1861848 2 0.935

1. spacer 3.1|1035215|38|NZ_CP015645|CRT matches to position: 1458323-1458360, mismatch: 1, identity: 0.974

agaaattggggttccaatttctctatgttggggccccg	CRISPR spacer
agaaattggcgttccaatttctctatgttggggccccg	Protospacer
********* ****************************

2. spacer 2.1|474434|32|NZ_CP015645|CRISPRCasFinder matches to position: 330711-330742, mismatch: 2, identity: 0.938

agctgaccaaaagtcagctttcaataatgtgc	CRISPR spacer
agctggccaatagtcagctttcaataatgtgc	Protospacer
*****.**** *********************

3. spacer 2.1|474434|32|NZ_CP015645|CRISPRCasFinder matches to position: 735315-735346, mismatch: 2, identity: 0.938

agctgaccaaaagtcagctttcaataatgtgc	CRISPR spacer
agctgacgaaaagtcagcttacaataatgtgc	Protospacer
******* ************ ***********

4. spacer 2.1|474434|32|NZ_CP015645|CRISPRCasFinder matches to position: 822906-822937, mismatch: 2, identity: 0.938

agctgaccaaaagtcagctttcaataatgtgc	CRISPR spacer
agctgacgaaaagtcagcttacaataatgtgc	Protospacer
******* ************ ***********

5. spacer 2.1|474434|32|NZ_CP015645|CRISPRCasFinder matches to position: 947423-947454, mismatch: 2, identity: 0.938

agctgaccaaaagtcagctttcaataatgtgc	CRISPR spacer
agctgacgaaaagtcagcttacaataatgtgc	Protospacer
******* ************ ***********

6. spacer 2.1|474434|32|NZ_CP015645|CRISPRCasFinder matches to position: 1031348-1031379, mismatch: 2, identity: 0.938

agctgaccaaaagtcagctttcaataatgtgc	CRISPR spacer
agctgacgaaaagtcagcttacaataatgtgc	Protospacer
******* ************ ***********

7. spacer 2.1|474434|32|NZ_CP015645|CRISPRCasFinder matches to position: 1861916-1861947, mismatch: 2, identity: 0.938

agctgaccaaaagtcagctttcaataatgtgc	CRISPR spacer
agctgacgaaaagtcagcttacaataatgtgc	Protospacer
******* ************ ***********

8. spacer 2.1|474434|32|NZ_CP015645|CRISPRCasFinder matches to position: 1959371-1959402, mismatch: 2, identity: 0.938

agctgaccaaaagtcagctttcaataatgtgc	CRISPR spacer
agctgacgaaaagtcagcttacaataatgtgc	Protospacer
******* ************ ***********

9. spacer 3.1|1035215|38|NZ_CP015645|CRT matches to position: 1458379-1458416, mismatch: 2, identity: 0.947

agaaattggggttccaatttctctatgttggggccccg	CRISPR spacer
agaaattggcgttccaatttctttatgttggggccccg	Protospacer
********* ************.***************

10. spacer 6.1|1404697|31|NZ_CP015645|CRISPRCasFinder matches to position: 330841-330871, mismatch: 2, identity: 0.935

gggccccaacatagtgaatttcgaaatgaaa	CRISPR spacer
gggccccaacatagagaatttcgaaaagaaa	Protospacer
************** *********** ****

11. spacer 6.1|1404697|31|NZ_CP015645|CRISPRCasFinder matches to position: 1134014-1134044, mismatch: 2, identity: 0.935

gggccccaacatagtgaatttcgaaatgaaa	CRISPR spacer
gggccccaacatagagaatttcgaaaagaaa	Protospacer
************** *********** ****

12. spacer 6.1|1404697|31|NZ_CP015645|CRISPRCasFinder matches to position: 1861818-1861848, mismatch: 2, identity: 0.935

gggccccaacatagtgaatttcgaaatgaaa	CRISPR spacer
gggccccaacatagagaatttcgaaaagaaa	Protospacer
************** *********** ****

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP015645_1 1.1|388298|32|NZ_CP015645|CRISPRCasFinder 388298-388329 32 KM359505 Prochlorococcus phage P-TIM68, complete genome 102705-102736 8 0.75

1. spacer 1.1|388298|32|NZ_CP015645|CRISPRCasFinder matches to KM359505 (Prochlorococcus phage P-TIM68, complete genome) position: , mismatch: 8, identity: 0.75

ggtctgtagaatttcttttcgaaattctctgt	CRISPR spacer
gatctgtataatttcttttggaaatagttaat	Protospacer
*.****** ********** *****  *. .*

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 122418 : 128097 6 Staphylococcus_phage(100.0%) NA NA
DBSCAN-SWA_2 222092 : 268852 45 Staphylococcus_phage(86.67%) tRNA,protease NA
DBSCAN-SWA_3 278043 : 325740 44 Staphylococcus_phage(94.59%) tRNA,protease NA
DBSCAN-SWA_4 450256 : 459299 7 uncultured_Mediterranean_phage(50.0%) tRNA NA
DBSCAN-SWA_5 527153 : 535483 7 Caulobacter_phage(16.67%) tRNA NA
DBSCAN-SWA_6 599995 : 681334 97 Staphylococcus_phage(72.6%) tRNA,capsid,head,plate,integrase,protease,portal,tail,holin,terminase attL 599972:599991|attR 645339:645358
DBSCAN-SWA_7 1150333 : 1158806 9 Synechococcus_phage(33.33%) NA NA
DBSCAN-SWA_8 1178774 : 1224597 47 Enterococcus_phage(20.0%) bacteriocin,protease NA
DBSCAN-SWA_9 1314550 : 1360569 70 Staphylococcus_phage(85.07%) head,capsid,plate,integrase,portal,tail,holin,terminase attL 1307887:1307902|attR 1365249:1365264
DBSCAN-SWA_10 1445812 : 1460487 14 uncultured_Caudovirales_phage(50.0%) NA NA
DBSCAN-SWA_11 1472458 : 1480278 10 Pandoravirus(16.67%) NA NA
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Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
NZ_CP015645.1|WP_031835073.1|1456746_1456848_-|hypothetical-protein 1456746_1456848_- 33 aa aa NA NA NA 1445812-1460487 yes