Please click to download your results

Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP015646 Staphylococcus aureus strain 08-02300 chromosome, complete genome 8 crisprs cas3,DEDDh,DinG,csa3,WYL 3 2 8 0

Results visualization

1. NZ_CP015646
Click the left colored region to show detailed information
CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP015646_1 526538-526639 Orphan NA
1 spacers

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information
CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP015646_2 770609-770699 Orphan NA
1 spacers

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information
CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP015646_3 886394-886476 Orphan NA
1 spacers

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information
CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP015646_4 976134-976215 Orphan NA
1 spacers

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information
CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP015646_5 1243956-1244041 Orphan NA
1 spacers

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information
CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP015646_6 1729990-1730072 Orphan NA
1 spacers

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information
CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP015646_7 2289206-2289295 Orphan NA
1 spacers
csa3

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information
CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP015646_8 2472977-2473065 Orphan NA
1 spacers

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
NZ_CP015646_5 5.1|1243986|26|NZ_CP015646|CRISPRCasFinder 1243986-1244011 26 NZ_CP015646.1 101943-101968 0 1.0
NZ_CP015646_5 5.1|1243986|26|NZ_CP015646|CRISPRCasFinder 1243986-1244011 26 NZ_CP015646.1 284624-284649 0 1.0
NZ_CP015646_4 4.1|976158|34|NZ_CP015646|CRISPRCasFinder 976158-976191 34 NZ_CP015646.1 1454601-1454634 1 0.971
NZ_CP015646_4 4.1|976158|34|NZ_CP015646|CRISPRCasFinder 976158-976191 34 NZ_CP015646.1 1543835-1543868 1 0.971
NZ_CP015646_5 5.1|1243986|26|NZ_CP015646|CRISPRCasFinder 1243986-1244011 26 NZ_CP015646.1 976493-976518 1 0.962
NZ_CP015646_5 5.1|1243986|26|NZ_CP015646|CRISPRCasFinder 1243986-1244011 26 NZ_CP015646.1 976549-976574 1 0.962
NZ_CP015646_5 5.1|1243986|26|NZ_CP015646|CRISPRCasFinder 1243986-1244011 26 NZ_CP015646.1 976605-976630 1 0.962
NZ_CP015646_5 5.1|1243986|26|NZ_CP015646|CRISPRCasFinder 1243986-1244011 26 NZ_CP015646.1 976661-976686 1 0.962
NZ_CP015646_5 5.1|1243986|26|NZ_CP015646|CRISPRCasFinder 1243986-1244011 26 NZ_CP015646.1 976717-976742 1 0.962
NZ_CP015646_6 6.1|1730016|31|NZ_CP015646|CRISPRCasFinder 1730016-1730046 31 NZ_CP015646.1 1243922-1243952 1 0.968
NZ_CP015646_4 4.1|976158|34|NZ_CP015646|CRISPRCasFinder 976158-976191 34 NZ_CP015646.1 284568-284601 2 0.941
NZ_CP015646_5 5.1|1243986|26|NZ_CP015646|CRISPRCasFinder 1243986-1244011 26 NZ_CP015646.1 101999-102024 2 0.923
NZ_CP015646_5 5.1|1243986|26|NZ_CP015646|CRISPRCasFinder 1243986-1244011 26 NZ_CP015646.1 895866-895891 2 0.923
NZ_CP015646_5 5.1|1243986|26|NZ_CP015646|CRISPRCasFinder 1243986-1244011 26 NZ_CP015646.1 1025403-1025428 2 0.923
NZ_CP015646_5 5.1|1243986|26|NZ_CP015646|CRISPRCasFinder 1243986-1244011 26 NZ_CP015646.1 2574268-2574293 2 0.923

1. spacer 5.1|1243986|26|NZ_CP015646|CRISPRCasFinder matches to position: 101943-101968, mismatch: 0, identity: 1.0

cggggccccaacatagaagctggcgg	CRISPR spacer
cggggccccaacatagaagctggcgg	Protospacer
**************************

2. spacer 5.1|1243986|26|NZ_CP015646|CRISPRCasFinder matches to position: 284624-284649, mismatch: 0, identity: 1.0

cggggccccaacatagaagctggcgg	CRISPR spacer
cggggccccaacatagaagctggcgg	Protospacer
**************************

3. spacer 4.1|976158|34|NZ_CP015646|CRISPRCasFinder matches to position: 1454601-1454634, mismatch: 1, identity: 0.971

attgagaatccaatttctctttgttggggcccat	CRISPR spacer
attgggaatccaatttctctttgttggggcccat	Protospacer
****.*****************************

4. spacer 4.1|976158|34|NZ_CP015646|CRISPRCasFinder matches to position: 1543835-1543868, mismatch: 1, identity: 0.971

attgagaatccaatttctctttgttggggcccat	CRISPR spacer
attgggaatccaatttctctttgttggggcccat	Protospacer
****.*****************************

5. spacer 5.1|1243986|26|NZ_CP015646|CRISPRCasFinder matches to position: 976493-976518, mismatch: 1, identity: 0.962

cggggccccaacatagaagctggcgg	CRISPR spacer
cggggccccaacacagaagctggcgg	Protospacer
*************.************

6. spacer 5.1|1243986|26|NZ_CP015646|CRISPRCasFinder matches to position: 976549-976574, mismatch: 1, identity: 0.962

cggggccccaacatagaagctggcgg	CRISPR spacer
cggggccccaacacagaagctggcgg	Protospacer
*************.************

7. spacer 5.1|1243986|26|NZ_CP015646|CRISPRCasFinder matches to position: 976605-976630, mismatch: 1, identity: 0.962

cggggccccaacatagaagctggcgg	CRISPR spacer
cggggccccaacacagaagctggcgg	Protospacer
*************.************

8. spacer 5.1|1243986|26|NZ_CP015646|CRISPRCasFinder matches to position: 976661-976686, mismatch: 1, identity: 0.962

cggggccccaacatagaagctggcgg	CRISPR spacer
cggggccccaacacagaagctggcgg	Protospacer
*************.************

9. spacer 5.1|1243986|26|NZ_CP015646|CRISPRCasFinder matches to position: 976717-976742, mismatch: 1, identity: 0.962

cggggccccaacatagaagctggcgg	CRISPR spacer
cggggccccaacacagaagctggcgg	Protospacer
*************.************

10. spacer 6.1|1730016|31|NZ_CP015646|CRISPRCasFinder matches to position: 1243922-1243952, mismatch: 1, identity: 0.968

tcagcttctatgttggggccccaccccaact	CRISPR spacer
tcagcttctgtgttggggccccaccccaact	Protospacer
*********.*********************

11. spacer 4.1|976158|34|NZ_CP015646|CRISPRCasFinder matches to position: 284568-284601, mismatch: 2, identity: 0.941

attgagaatccaatttctctttgttggggcccat	CRISPR spacer
attgggaatccaattcctctttgttggggcccat	Protospacer
****.**********.******************

12. spacer 5.1|1243986|26|NZ_CP015646|CRISPRCasFinder matches to position: 101999-102024, mismatch: 2, identity: 0.923

cggggccccaacatagaagctggcgg	CRISPR spacer
cggggccccaacaaagaagctgacgg	Protospacer
************* ********.***

13. spacer 5.1|1243986|26|NZ_CP015646|CRISPRCasFinder matches to position: 895866-895891, mismatch: 2, identity: 0.923

cggggccccaacatagaagctggcgg	CRISPR spacer
cggggccccaacacagaagcaggcgg	Protospacer
*************.****** *****

14. spacer 5.1|1243986|26|NZ_CP015646|CRISPRCasFinder matches to position: 1025403-1025428, mismatch: 2, identity: 0.923

cggggccccaacatagaagctggcgg	CRISPR spacer
cggggccccaacacagaggctggcgg	Protospacer
*************.***.********

15. spacer 5.1|1243986|26|NZ_CP015646|CRISPRCasFinder matches to position: 2574268-2574293, mismatch: 2, identity: 0.923

cggggccccaacatagaagctggcgg	CRISPR spacer
cggggccccaacacagtagctggcgg	Protospacer
*************.** *********

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP015646_8 8.1|2473006|31|NZ_CP015646|CRISPRCasFinder 2473006-2473036 31 NZ_CP039703 Clostridium butyricum strain 29-1 plasmid p-butyl_plas_29-1, complete sequence 498450-498480 7 0.774
NZ_CP015646_8 8.1|2473006|31|NZ_CP015646|CRISPRCasFinder 2473006-2473036 31 NZ_CP039706 Clostridium butyricum strain 4-1 plasmid p-butyl_plas_4-1, complete sequence 164882-164912 7 0.774
NZ_CP015646_2 2.1|770639|31|NZ_CP015646|CRISPRCasFinder 770639-770669 31 NZ_LR135334 Enterococcus faecium isolate E7471 plasmid 4 57039-57069 8 0.742
NZ_CP015646_2 2.1|770639|31|NZ_CP015646|CRISPRCasFinder 770639-770669 31 NZ_LR135205 Enterococcus faecium isolate E7171 plasmid 3 1277-1307 8 0.742

1. spacer 8.1|2473006|31|NZ_CP015646|CRISPRCasFinder matches to NZ_CP039703 (Clostridium butyricum strain 29-1 plasmid p-butyl_plas_29-1, complete sequence) position: , mismatch: 7, identity: 0.774

taccttttgcctttaacttaagttattagaa--	CRISPR spacer
taccttttgcttttaatttaagt--gcaaaatt	Protospacer
**********.*****.******   .*.**  

2. spacer 8.1|2473006|31|NZ_CP015646|CRISPRCasFinder matches to NZ_CP039706 (Clostridium butyricum strain 4-1 plasmid p-butyl_plas_4-1, complete sequence) position: , mismatch: 7, identity: 0.774

taccttttgcctttaacttaagttattagaa--	CRISPR spacer
taccttttgcttttaatttaagt--gcaaaatt	Protospacer
**********.*****.******   .*.**  

3. spacer 2.1|770639|31|NZ_CP015646|CRISPRCasFinder matches to NZ_LR135334 (Enterococcus faecium isolate E7471 plasmid 4) position: , mismatch: 8, identity: 0.742

gtgaagaggaacgcagttggatgctaaggca	CRISPR spacer
ctttagaagaacgcagtttgatgctaattta	Protospacer
 *  ***.********** ********  .*

4. spacer 2.1|770639|31|NZ_CP015646|CRISPRCasFinder matches to NZ_LR135205 (Enterococcus faecium isolate E7171 plasmid 3) position: , mismatch: 8, identity: 0.742

gtgaagaggaacgcagttggatgctaaggca	CRISPR spacer
ctttagaagaacgcagtttgatgctaattta	Protospacer
 *  ***.********** ********  .*

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 864558 : 872378 10 Hokovirus(16.67%) NA NA
DBSCAN-SWA_2 884349 : 898968 14 uncultured_Caudovirales_phage(50.0%) NA NA
DBSCAN-SWA_3 1072086 : 1124102 52 Streptococcus_phage(33.33%) protease,tRNA,bacteriocin NA
DBSCAN-SWA_4 1144080 : 1152568 9 Synechococcus_phage(33.33%) NA NA
DBSCAN-SWA_5 1701594 : 1709924 7 Staphylococcus_phage(16.67%) tRNA NA
DBSCAN-SWA_6 1779536 : 1788579 7 uncultured_Mediterranean_phage(50.0%) tRNA NA
DBSCAN-SWA_7 1914345 : 1976947 60 Staphylococcus_phage(93.48%) protease,tRNA NA
DBSCAN-SWA_8 2067689 : 2166344 114 Staphylococcus_phage(86.67%) tail,terminase,integrase,head,protease,capsid,portal,holin,tRNA attL 2131162:2131179|attR 2155589:2155606
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage