CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP014007	Kosakonia oryzae strain Ola 51 chromosome, complete genome	2 crisprs	cas3,csa3,DEDDh,DinG	0	4	9	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP014007_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP014007_1

575967-576065

Orphan

Consensus_repeat	Method
GTGGTTTTGGTGGCGAACGTCGTG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP014007_1

>merge|NZ_CP014007|1|575967-576065|CRISPRCasFinder
GTGGTTTTGGTGGCGAACGTCGTGAAGGCGGTCGTAGCGAAGGCCGTCGTTTCAGCGGTGAGCGTCAGGAAGGCCGTAGTTTTGGTGGCGAACGTCGTG

>NZ_CP014007|1|1|575967-576065|CRISPRCasFinder
GTGGTTTTGGTGGCGAACGTCGTG	AAGGCGGTCGTAGCGAAGGCCGTCGTTTCAGCGGTGAGCGTCAGGAAGGCC
GTAGTTTTGGTGGCGAACGTCGTG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP014007.1\|WP_064563417.1\|583287_583941_+\|NAD(P)H-binding-protein	unknown	unknown	gnl\|CDD\|187560
NZ_CP014007.1\|WP_007369936.1\|577588_578596_-\|LLM-class-flavin-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|182505
NZ_CP014007.1\|WP_064563401.1\|570389_570659_+\|30S-ribosomal-protein-S15	unknown	unknown	gnl\|CDD\|180170
NZ_CP014007.1\|WP_043956406.1\|576256_577501_+\|tryptophan-permease	unknown	unknown	gnl\|CDD\|182492
NZ_CP014007.1\|WP_107147034.1\|574140_574221_+\|protein-YrbN	unknown	unknown	gnl\|CDD\|380282
NZ_CP014007.1\|WP_064563413.1\|582224_582662_+\|YhbP-family-protein	unknown	unknown	gnl\|CDD\|235127
NZ_CP014007.1\|WP_043956399.1\|561993_563340_-\|argininosuccinate-synthase	unknown	unknown	gnl\|CDD\|235434
NZ_CP014007.1\|WP_043956403.1\|570903_573039_+\|polyribonucleotide-nucleotidyltransferase	unknown	unknown	gnl\|CDD\|236995
NZ_CP014007.1\|WP_043956400.1\|564481_565969_+\|transcription-termination/antitermination-protein-NusA	unknown	unknown	gnl\|CDD\|236410
NZ_CP014007.1\|WP_064563397.1\|565993_568705_+\|translation-initiation-factor-IF-2	unknown	unknown	gnl\|CDD\|235401
NZ_CP014007.1\|WP_064563403.1\|578737_579616_-\|U32-family-peptidase	unknown	unknown	gnl\|CDD\|237968
NZ_CP014007.1\|WP_043956404.1\|573149_574034_+\|lipoprotein-NlpI	unknown	unknown	gnl\|CDD\|236875
NZ_CP014007.1\|WP_064563409.1\|581377_581881_+\|N-acetyltransferase	unknown	unknown	gnl\|CDD\|225695
NZ_CP014007.1\|WP_043956402.1\|569293_570241_+\|tRNA-pseudouridine(55)-synthase-TruB	unknown	unknown	gnl\|CDD\|235333
NZ_CP014007.1\|WP_064563405.1\|579623_580619_-\|U32-family-peptidase	unknown	unknown	gnl\|CDD\|223896
NZ_CP014007.1\|WP_064563395.1\|564000_564453_+\|ribosome-maturation-factor-RimP	unknown	unknown	gnl\|CDD\|234627
NZ_CP014007.1\|WP_064563399.1\|568892_569294_+\|30S-ribosome-binding-factor-RbfA	unknown	unknown	gnl\|CDD\|234787
NZ_CP014007.1\|WP_064563411.1\|581837_582170_-\|GIY-YIG-nuclease-family-protein	unknown	unknown	gnl\|CDD\|178979
NZ_CP014007.1\|WP_064563415.1\|582647_583166_-\|type-1-glutamine-amidotransferase	unknown	unknown	gnl\|CDD\|153228
NZ_CP014007.1\|WP_064563407.1\|580859_581384_+\|SCP2-domain-containing-protein	unknown	unknown	gnl\|CDD\|225696

Protein	Function_ID	Function_description	E-value
NZ_CP014007.1\|WP_064563417.1\|583287_583941_+\|NAD(P)H-binding-protein	gnl\|CDD\|187560	cd05250, CC3_like_SDR_a, CC3(TIP30)-like, atypical (a) SDRs. Atypical SDRs in this subgroup include CC3 (also known as TIP30) which is implicated in tumor suppression. Atypical SDRs are distinct from classical SDRs. Members of this subgroup have a glycine rich NAD(P)-binding motif that resembles the extended SDRs, and have an active site triad of the SDRs (YXXXK and upstream Ser), although the upstream Asn of the usual SDR active site is substituted with Asp. For CC3, the Tyr of the triad is displaced compared to the usual SDRs and the protein is monomeric, both these observations suggest that the usual SDR catalytic activity is not present. NADP appears to serve an important role as a ligand, and may be important in the interaction with other macromolecules. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.	1.32445e-63
NZ_CP014007.1\|WP_007369936.1\|577588_578596_-\|LLM-class-flavin-dependent-oxidoreductase	gnl\|CDD\|182505	PRK10508, PRK10508, luciferase-like monooxygenase.	0
NZ_CP014007.1\|WP_064563401.1\|570389_570659_+\|30S-ribosomal-protein-S15	gnl\|CDD\|180170	PRK05626, rpsO, 30S ribosomal protein S15; Reviewed.	2.94334e-52
NZ_CP014007.1\|WP_043956406.1\|576256_577501_+\|tryptophan-permease	gnl\|CDD\|182492	PRK10483, PRK10483, tryptophan permease; Provisional.	0
NZ_CP014007.1\|WP_107147034.1\|574140_574221_+\|protein-YrbN	gnl\|CDD\|380282	NF033440, small_YrbN, protein YrbN. YrbN, a small protein of only 26 amino acids, is found in at least these genera: Escherichia, Salmonella, Enterobacter, Klebsiella, and Yersinia. It is known to be expressed in E. coli.	0.000483266
NZ_CP014007.1\|WP_064563413.1\|582224_582662_+\|YhbP-family-protein	gnl\|CDD\|235127	PRK03467, PRK03467, hypothetical protein; Provisional.	4.49898e-95
NZ_CP014007.1\|WP_043956399.1\|561993_563340_-\|argininosuccinate-synthase	gnl\|CDD\|235434	PRK05370, PRK05370, argininosuccinate synthase; Validated.	0
NZ_CP014007.1\|WP_043956403.1\|570903_573039_+\|polyribonucleotide-nucleotidyltransferase	gnl\|CDD\|236995	PRK11824, PRK11824, polynucleotide phosphorylase/polyadenylase; Provisional.	0
NZ_CP014007.1\|WP_043956400.1\|564481_565969_+\|transcription-termination/antitermination-protein-NusA	gnl\|CDD\|236410	PRK09202, nusA, transcription elongation factor NusA; Validated.	0
NZ_CP014007.1\|WP_064563397.1\|565993_568705_+\|translation-initiation-factor-IF-2	gnl\|CDD\|235401	PRK05306, infB, translation initiation factor IF-2; Validated.	0
NZ_CP014007.1\|WP_064563403.1\|578737_579616_-\|U32-family-peptidase	gnl\|CDD\|237968	PRK15447, PRK15447, putative protease; Provisional.	0
NZ_CP014007.1\|WP_043956404.1\|573149_574034_+\|lipoprotein-NlpI	gnl\|CDD\|236875	PRK11189, PRK11189, lipoprotein NlpI; Provisional.	0
NZ_CP014007.1\|WP_064563409.1\|581377_581881_+\|N-acetyltransferase	gnl\|CDD\|225695	COG3153, COG3153, Predicted acetyltransferase [General function prediction only].	6.14466e-62
NZ_CP014007.1\|WP_043956402.1\|569293_570241_+\|tRNA-pseudouridine(55)-synthase-TruB	gnl\|CDD\|235333	PRK05033, truB, tRNA pseudouridine synthase B; Provisional.	0
NZ_CP014007.1\|WP_064563405.1\|579623_580619_-\|U32-family-peptidase	gnl\|CDD\|223896	COG0826, COG0826, Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones].	4.80562e-116
NZ_CP014007.1\|WP_064563395.1\|564000_564453_+\|ribosome-maturation-factor-RimP	gnl\|CDD\|234627	PRK00092, PRK00092, ribosome maturation protein RimP; Reviewed.	2.09231e-78
NZ_CP014007.1\|WP_064563399.1\|568892_569294_+\|30S-ribosome-binding-factor-RbfA	gnl\|CDD\|234787	PRK00521, rbfA, 30S ribosome-binding factor RbfA.	1.9396e-52
NZ_CP014007.1\|WP_064563411.1\|581837_582170_-\|GIY-YIG-nuclease-family-protein	gnl\|CDD\|178979	PRK00329, PRK00329, GIY-YIG nuclease superfamily protein; Validated.	5.26594e-43
NZ_CP014007.1\|WP_064563415.1\|582647_583166_-\|type-1-glutamine-amidotransferase	gnl\|CDD\|153228	cd03134, GATase1_PfpI_like, A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus. A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus. This group includes proteins similar to PfpI from P. furiosus. and PH1704 from Pyrococcus horikoshii. These enzymes are ATP-independent intracellular proteases and may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For PH1704, it is believed that this Cys together with a different His in one monomer and Glu (from an adjacent monomer) forms a different catalytic triad from the typical GATase1domain. PfpI is homooligomeric. Protease activity is only found for oligomeric forms of PH1704.	6.4785e-81
NZ_CP014007.1\|WP_064563407.1\|580859_581384_+\|SCP2-domain-containing-protein	gnl\|CDD\|225696	COG3154, COG3154, Putative lipid carrier protein [Lipid metabolism].	1.30157e-72

>NZ_CP014007.1|WP_107147034.1|574140_574221_+|protein-YrbN
MKIANHFHDELCRLAANDIEALVLHG
>NZ_CP014007.1|WP_043956404.1|573149_574034_+|lipoprotein-NlpI
MKPFLRWCFVATALTLAGCSNSAWRKSEVLAVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYIVERKLNEKQAKEALKQRFEKSDKEQWGWNIVEFYLGDISEATLMDRLKADATDNTSLAEHLSETNFYLGKYYLSLGDKDSATALFKLTVANNVHNFVEHRYALLELALLGQEHDDLAESDQQ
>NZ_CP014007.1|WP_043956403.1|570903_573039_+|polyribonucleotide-nucleotidyltransferase
MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERTYAAGKIPGGFFRREGRPSEGETLIARLIDRPVRPLFPEGFVNEVQVIATVVSVNPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQEELKASKLDLVVAGTEAAVLMVESEAELLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEAVNEALNARVAALAESRLSDAYRITDKQERYAQVDVIKSETIATLTAEDETLDANELGEILHAIEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQIIDELMGERTDSFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDAEKFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPVKAAVAGIAMGLVKEGDNFVVLSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILSVMEQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGEKAKFAIRRIEEITAEIEVGRIYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRIRLSIKEATEQTQPAEALEAPQAEQGE
>NZ_CP014007.1|WP_064563401.1|570389_570659_+|30S-ribosomal-protein-S15
MSLSTEATAKIVSEFGRDANDTGSTDVQIALLTAQINHLQSHFAEHKKDHHSRRGLLGMVSRRRKLLDYLKRKDVARYTALIERLGLRR
>NZ_CP014007.1|WP_043956402.1|569293_570241_+|tRNA-pseudouridine(55)-synthase-TruB
MSRPRRRGRDVHGVLLLDKQQGASSNDVLQKVKRLYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVTFTDEQLAAALESFRGDTQQVPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELIFIRHEGNELELEIHCSKGTYIRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLHELVAQAEQQNIPAAQLLDPLLMPMDSPASDFPVVNIPSVVAAYFKNGQPVRASAAPKEGLVRVTEGDEGKFIGMGEIDDDARVAPRRLVVEYPAV
>NZ_CP014007.1|WP_064563399.1|568892_569294_+|30S-ribosome-binding-factor-RbfA
MAKEFGRPQRVAQELQKEIAIILQREIKDPRLGMMTTVSGVEVSRDLAYAKVFVTFLNDKDEASVKAGIKALQDASGFIRTLVGKAMRLRIVPELTFFYDNSLVEGMRMSNLVTSVVKHDDERRVNPDDSKED
>NZ_CP014007.1|WP_064563397.1|565993_568705_+|translation-initiation-factor-IF-2
MTDVTVKTLAAEIQTSVDRLVQQFADAGIRKSAEDSVTAQEKQTLLAHLNREHGSSPDKLTLQRKTRSTLSIQGTGGKSKSVQIEVRKKRTFVKRDPQEAERLAAEEEAMREAEEKARREAEEAAEREAEEKAKREAESRLKREAEEKAKREHAENAKREAAENSKVSNQQSDEMTRAAQTEKARREAEAQELKRKAEEEARRKLEENARRVAEEARRMAEQNENGWAASSDEEETIGDYHVTTSQHARQAEDDNDREVEGGRGRTRTAKAARPKKGNKHAESKADREEARAAVRGGKGGRQRKGSTLQQGFQKPAQAVNRDVVIGETLTVGELANKMAVKGSQVIKAMMKLGAMATINQVIDQETAQLVAEEMGHKVILRRENELEEAVMSDRDTGAAAEPRAPVVTIMGHVDHGKTSLLDYIRSTKVASGEAGGITQHIGAYHVETDNGMITFLDTPGHAAFTAMRARGAQATDIVVLVVAADDGVMPQTIEAIQHAKAAQVPVVVAVNKIDKPEADPDRVKNELAQYGIIPEEWGGESQFVHVSAKAGTGIDDLLDAILLQAEVLELKAIRKGMASGVVIESFLDKGRGPVASVLVREGTLHKGDIVLCGFEYGRVRAMRDELGREVTEAGPSIPVEILGLSGVPAAGDEATVVRDEKKAREVALYRQGKFREVKLARQQKSKLENMFANMTEGEVHEVNIVLKADVQGSVEAISDSLLKLSTEEVKVKIVGSGVGGITETDATLAAASNAILVGFNVRADASARRVIEAEGLDLRYYSVIYNLIDEVKAAMSGMLSPELKQQIIGLAEVRDVFKSPKFGAIAGCMVTEGVVKRHNPIRVLRDNVVIYEGELESLRRFKDDVNEVRNGMECGIGVKNYNDVRTGDMIEVFEIIEIQRTIE
>NZ_CP014007.1|WP_043956400.1|564481_565969_+|transcription-termination/antitermination-protein-NusA
MNKEILAVVEAVSNEKSLPREKIFEALESALATATKKKYEQEIDVRVSIDRKSGDFDTFRRWMVVEEVTQPTREITLEAARYEDESLNVGDYVEDQIESVTFDRITTQTAKQVIVQKVREAERAMVVDQFREHEGEIITGVVKKVNRDNITLDLGSNAEAVILREDMLPRENFRPGDRIRGVLYAVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKTNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDEDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVEDLQSKHQAEAHAAIDTFTRYLDIDEDFATVLVEEGFSTLEELAYVPIKELLEIDGLDEDTVEALRDRAKNALTTLALAQEESLGNKEPAEDLLNLEGLDRALAFKLAARGVCTLEDLAEQGVDDLSDIEGLTDEKAGELIMAARNICWFGDEA
>NZ_CP014007.1|WP_064563395.1|564000_564453_+|ribosome-maturation-factor-RimP
MSTLEQKLTEMITAPVEALGYELVGIEFVRGRTSTLRIYIDSEDGINVDDCADVSHQVSAVLDVEDPITVAYNLEVSSPGLERPLFTAEHYARFKGDEVTLVLRMAVQNRRKWQGIIKDVDGEMITVTVEGKDEVFALSNIQKANLVPHF
>NZ_CP014007.1|WP_043956399.1|561993_563340_-|argininosuccinate-synthase
MTTILKHLPTGQRIGIAFSGGLDTSAALLWMRQKGAVPYAYTANLGQPDEDDYDAIPRRAKEYGAENARLIDCRKQLVAEGIAAIQCGAFHNTTGGLTYFNTTPLGRAVTGTMLVAAMKEDGVNIWGDGSTYKGNDIERFYRYGLLTNAELKIYKPWLDTDFIDELGGRQEMSEFMTASGFDYKMSAEKAYSTDSNMLGATHEAKDLEFLNSSVKIVNPIMGVKFWDENVKIQAEEVTVRFERGHPVALNGKTFADDVELMLEANRIGGRHGLGMSDQIENRIIEAKSRGIYEAPGMALLHIAYERLLTGIHNEDTIEQYHAHGRQLGRLLYQGRWFDPQALMLRDSLQRWVASAITGEVTLELRRGNDYSILNTVSDNLTYKAERLTMEKGESVFSPDDRIGQLTMRNLDITDTREKLFNYVQTGLLSTTSGNGLPQVENLENSEKK
>NZ_CP014007.1|WP_043956406.1|576256_577501_+|tryptophan-permease
MSTLTTTQASPSLFGGVVIIGGTIIGAGMFSLPVVMSGAWFFWSLLALLFTWFCMLHSGLMILEANLNYRSGASFDTITKDLLGKGWNLVNGVSIAFVLYILTYAYISASGSILHHTFAEMSLNVSPRLAGLCFALGVAFIVWLSTHAVSRMTAIVLGAKVITFFLTFGSLLGHVQPATLFNVAQSDASYTPYLLMTLPFCLASFGYHGNVPSLMKYYGKDPRTITRCLVYGTLLALGLYVVWLLVTMGNIPRPAFIEIAAKGGNIDVLVQALSGVLNSRSLDLLLVIFSNFAVASSFLGVTLGLFDYLADLFGFDDSPAGRFKTALLTFVPPIVGGLLWPNGFLYAIGYAGLAATIWAAIVPALLANASRKRFGSPAFRVWGGKPMIILILLFGIGNAVVHLLSSFNLLPVYQ
>NZ_CP014007.1|WP_007369936.1|577588_578596_-|LLM-class-flavin-dependent-oxidoreductase
MSEKTIPFSVLDLAPIPQGSSAREAFTHSLDLAKLAEKRGYHRYWLAEHHNMTGIASAATSVLIGYLAANTQTLHLGSGGVMLPNHSPLVIAEQFGTLNTLYPGRIDLGLGRAPGSDQRTMMALRRHMSGDIDNFPRDVAELVDWFDARDPNPHVRPVPGYGEQIPVWLLGSSLYSAQLAAQLGLPFAFASHFAPDMLFQALHLYRTNFKPSARLEKPYAMVCINIVVADSNRDAEFLFTSMQQAFVKLRRGETAQLPPPIANMDQFWSPSEQYGVQQALSMSLVGDKAKVRHGLESILRETDADEIMVNGQIFDHQARLYSFELAMQVKEALLG
>NZ_CP014007.1|WP_064563403.1|578737_579616_-|U32-family-peptidase
MKYSLGPVLYYWPKETLEDFYRQAASSSADVIYLGEAVCSKRRATKVGDWLEMAKTLASSGKQVVLSTLALVQASSELNELKRYVDNGEFLLEASDLGVVNMCADRKLPFVAGHALNCYNAVTLRLLLKQGMVRWCMPVELSRDWLVNLLEQCETLGIRRQFEVEVLSYGHLPLAYSARCFTARSEDRPKDECETCCIKYPNGRSMVSQENQQVFVLNGIQTMSGYVYNLGNELVSMKDVVDIVRLSPMGPETFAMLDAFKANETGNAPLPLTSHSDCNGYWRRLPGLQLEL
>NZ_CP014007.1|WP_064563405.1|579623_580619_-|U32-family-peptidase
MELLCPAGNLPALKAAIENGADAVYIGLKDDTNARHFAGLNFTEKKLQEAVSFVHQHRRKLHIAINTFAHPDGYQRWERAVDMAAQMGADALILADLAMLEYAAERYPHIERHVSVQASATNEEAIRFYHRHFDVARVVLPRVLSIHQVKQLARATPVPLEVFAFGSLCIMAEGRCYLSSYLTGESPNTVGACSPARFVRWQQTPQGLESRLNDVLIDRYQEGENAGYPTLCKGRYLVDGERYHALEEPTSLNTLELLPELLAANIASVKIEGRQRSPAYVSQVAKVWRQAIDRCMAAPQGFVPQSAWMETLGAMSEGTQTTLGAYHRKWQ
>NZ_CP014007.1|WP_064563407.1|580859_581384_+|SCP2-domain-containing-protein
MLESLRSRLVHFGPALLSVPVKLTPFAIKRQVLEQVLRWQFQQALADGELEFLEGRWLSIQVRDIGLTWYTSVDNGQLIVRESADADVSFSADASDLLMIAARKQDPDTLFFQRRLAIEGDTELGLYVKNLMDAIELEQMPKPLRVMLLQLAEFVEAGLQAPPATTQPSVGEPC
>NZ_CP014007.1|WP_064563409.1|581377_581881_+|N-acetyltransferase
MLIRVEIPIDAPGIDALLRRSFGGEGEAMLVHNLREDGLITLGFVATDDEGQVVGYVAFSPVTVAGEELQWVGLAPLAVDEQYRGQGIARQLVYEGLDSLNEFGYAAVVTLGDPAFYGRLGFKKASQYDLRCRWPQTDEAFLVHPLADDALNGVNGQVEYSDHFDRL
>NZ_CP014007.1|WP_064563411.1|581837_582170_-|GIY-YIG-nuclease-family-protein
MTLWFLYLIRTADNMLYTGITTDVARRFTQHQNGKGAKALRGKGALALVFSAQVGERSLALRLEYRIKQLTKRQKERLVAGDGTFEALRESLQAAAVKGDRSDRCIPPGH
>NZ_CP014007.1|WP_064563413.1|582224_582662_+|YhbP-family-protein
METLAAINRWLAKQHVVSWCVANRGELWCANAFYVYDAQKVAFYILSEDHTRHSQMTGLQAKVAGTVNGQPKTVALIRGVQFTGEIRRLEGEESEAPRAQYNRRFPVARMLSAPMWEIRLHELKFTDNTLGFGKKLHWIRDSGTQ
>NZ_CP014007.1|WP_064563415.1|582647_583166_-|type-1-glutamine-amidotransferase
MSKKIAVLITDEFEDSEFTSPAQEFRQAGHEVITIEKQAGKTIHGKQGEAEVVIDKAIDEVRPADFDALLLPGGHSPDHLRGDERFVTFTRDFISSGKPVFAICHGPQLLISADAIRGRKLTAVKPIVVDVKNAGGEFYDQEVVIDKDQLVTSRTPEDLPAFNREALRLLGA
>NZ_CP014007.1|WP_064563417.1|583287_583941_+|NAD(P)H-binding-protein
MPRVMITGATGLVGGHLLRLLSKDARIGTIVAPTRRPLSGFPDVENPHDPQLSDALAQVNGAVDTVFCCLGTTRREAGSEEAFVLADYTLVVDTALTGLRLGARQMLVVSSLGANARSPFFYNRVKGEMEKALIAQEWPRLVIARPSMLLGEREKPRSSESLLAPLFRLLPGNWKSIRAQDVARALLTLSFTPAENRVEVVASAQLRAIAAGSQLAK

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Crispr_ID: NZ_CP014007_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP014007_2

3518975-3519422

Orphan

I-F

Consensus_repeat	Method
TTTCTAAGCTGCCTGTACGGCAGTGAAC	CRISPRCasFinder
TTTCTAAGCTGCCTGTACGGCAGTGAAC	CRT
TTTCTAAGCTGCCTGTACGGCAGTGAAC	PILER-CR

7 spacers

The CRISPR arrays of NZ_CP014007_2

>merge|NZ_CP014007|2|3518975-3519422|CRISPRCasFinder,CRT,PILER-CR
ACCTTAAGCTGCCTGTGGGGCAGTGAGCCGTGAAATCTCCTCCGACAGCAATGGGTGAGTTTTCTAAGCTGCCTGTACGGCAGTGAACTAATGAGTAAGCCGGTTTCGTGCGGCGCGTTGTTTCTAAGCTGCCTGTACGGCAGTGAACATCTTGCTGGGCCCGATGGTTATCTGCTGGTTTTTCTAAGCTGCCTGTACGGCAGTGAACGTTTGCCACGTTACTTTAACAAATTGTTGCAGTTTCTAAGCTGCCTGTACGGCAGTGAACGCTCGCGTTCAACACAATTCCGCATCCCGACATTTCTAAGCTGCCTGTACGGCAGTGAACCCAGATAACAGAACGATCAAGCGCTGGGTTGATTTCTAAGCTGCCTGTACGGCAGTGAACATATCGGTCCAGTTCCACGACGGCGTGAATGTTTTCTAAGCTGCCTGTACGGCAGTGAAC

>NZ_CP014007|2|2|3518975-3519422|CRISPRCasFinder
ACCTTAAGCTGCCTGTGGGGCAGTGAGC	CGTGAAATCTCCTCCGACAGCAATGGGTGAGT
TTTCTAAGCTGCCTGTACGGCAGTGAAC	TAATGAGTAAGCCGGTTTCGTGCGGCGCGTTG
TTTCTAAGCTGCCTGTACGGCAGTGAAC	ATCTTGCTGGGCCCGATGGTTATCTGCTGGTT
TTTCTAAGCTGCCTGTACGGCAGTGAAC	GTTTGCCACGTTACTTTAACAAATTGTTGCAG
TTTCTAAGCTGCCTGTACGGCAGTGAAC	GCTCGCGTTCAACACAATTCCGCATCCCGACA
TTTCTAAGCTGCCTGTACGGCAGTGAAC	CCAGATAACAGAACGATCAAGCGCTGGGTTGA
TTTCTAAGCTGCCTGTACGGCAGTGAAC	ATATCGGTCCAGTTCCACGACGGCGTGAATGT
TTTCTAAGCTGCCTGTACGGCAGTGAAC

>NZ_CP014007|2|1|3518975-3519422|CRT
ACCTTAAGCTGCCTGTGGGGCAGTGAGC	CGTGAAATCTCCTCCGACAGCAATGGGTGAGT
TTTCTAAGCTGCCTGTACGGCAGTGAAC	TAATGAGTAAGCCGGTTTCGTGCGGCGCGTTG
TTTCTAAGCTGCCTGTACGGCAGTGAAC	ATCTTGCTGGGCCCGATGGTTATCTGCTGGTT
TTTCTAAGCTGCCTGTACGGCAGTGAAC	GTTTGCCACGTTACTTTAACAAATTGTTGCAG
TTTCTAAGCTGCCTGTACGGCAGTGAAC	GCTCGCGTTCAACACAATTCCGCATCCCGACA
TTTCTAAGCTGCCTGTACGGCAGTGAAC	CCAGATAACAGAACGATCAAGCGCTGGGTTGA
TTTCTAAGCTGCCTGTACGGCAGTGAAC	ATATCGGTCCAGTTCCACGACGGCGTGAATGT
TTTCTAAGCTGCCTGTACGGCAGTGAAC

>NZ_CP014007|2|1|3519035-3519422|PILER-CR
TTTCTAAGCTGCCTGTACGGCAGTGAAC	TAATGAGTAAGCCGGTTTCGTGCGGCGCGTTG
TTTCTAAGCTGCCTGTACGGCAGTGAAC	ATCTTGCTGGGCCCGATGGTTATCTGCTGGTT
TTTCTAAGCTGCCTGTACGGCAGTGAAC	GTTTGCCACGTTACTTTAACAAATTGTTGCAG
TTTCTAAGCTGCCTGTACGGCAGTGAAC	GCTCGCGTTCAACACAATTCCGCATCCCGACA
TTTCTAAGCTGCCTGTACGGCAGTGAAC	CCAGATAACAGAACGATCAAGCGCTGGGTTGA
TTTCTAAGCTGCCTGTACGGCAGTGAAC	ATATCGGTCCAGTTCCACGACGGCGTGAATGT
TTTCTAAGCTGCCTGTACGGCAGTGAAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP014007.1\|WP_064567516.1\|3507964_3511750_-\|DNA-translocase-FtsK	unknown	unknown	gnl\|CDD\|236669
NZ_CP014007.1\|WP_064567537.1\|3523377_3523677_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP014007.1\|WP_064567531.1\|3520801_3521980_-\|acetyl-CoA-C-acetyltransferase	unknown	unknown	gnl\|CDD\|180261
NZ_CP014007.1\|WP_064567515.1\|3507227_3507896_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP014007.1\|WP_064567527.1\|3519675_3520119_+\|DUF2384-domain-containing-protein	unknown	unknown	gnl\|CDD\|131346
NZ_CP014007.1\|WP_064567535.1\|3522632_3523289_-\|acetate-CoA-transferase-subunit-alpha	unknown	unknown	gnl\|CDD\|182146
NZ_CP014007.1\|WP_064567542.1\|3525051_3526356_-\|citrate-transporter	unknown	unknown	gnl\|CDD\|225407
NZ_CP014007.1\|WP_000228469.1\|3511870_3512365_-\|leucine-responsive-transcriptional-regulator-Lrp	unknown	unknown	gnl\|CDD\|183009
NZ_CP014007.1\|WP_064567539.1\|3523676_3525017_-\|DUF1446-domain-containing-protein	unknown	unknown	gnl\|CDD\|377804
NZ_CP014007.1\|WP_064567546.1\|3527758_3530047_-\|ATP-dependent-Clp-protease-ATP-binding-subunit-ClpA	unknown	unknown	gnl\|CDD\|236828
NZ_CP014007.1\|WP_001040187.1\|3518553_3518772_+\|translation-initiation-factor-IF-1	unknown	unknown	gnl\|CDD\|178954
NZ_CP014007.1\|WP_064567544.1\|3526773_3527712_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176131
NZ_CP014007.1\|WP_064567519.1\|3512889_3513855_+\|thioredoxin-disulfide-reductase	unknown	unknown	gnl\|CDD\|182343
NZ_CP014007.1\|WP_064567529.1\|3520115_3520589_+\|RES-domain-containing-protein	unknown	unknown	gnl\|CDD\|227941
NZ_CP014007.1\|WP_064567521.1\|3513970_3515737_+\|cysteine/glutathione-ABC-transporter-permease/ATP-binding-protein-CydD	unknown	unknown	gnl\|CDD\|236870
NZ_CP014007.1\|WP_064567523.1\|3515737_3517459_+\|cysteine/glutathione-ABC-transporter-ATP-binding-protein/permease-CydC	unknown	unknown	gnl\|CDD\|236865
NZ_CP014007.1\|WP_064567525.1\|3517565_3518270_+\|leucyl/phenylalanyl-tRNA--protein-transferase	unknown	unknown	gnl\|CDD\|234720
NZ_CP014007.1\|WP_064567511.1\|3504931_3506275_-\|replication-associated-recombination-protein-RarA	unknown	unknown	gnl\|CDD\|237355
NZ_CP014007.1\|WP_064567533.1\|3521961_3522633_-\|CoA-transferase-subunit-B	unknown	unknown	gnl\|CDD\|188219
NZ_CP014007.1\|WP_064567513.1\|3506284_3506896_-\|outer-membrane-lipoprotein-chaperone-LolA	unknown	unknown	gnl\|CDD\|129638

Protein	Function_ID	Function_description	E-value
NZ_CP014007.1\|WP_064567516.1\|3507964_3511750_-\|DNA-translocase-FtsK	gnl\|CDD\|236669	PRK10263, PRK10263, DNA translocase FtsK; Provisional.	0
NZ_CP014007.1\|WP_064567546.1\|3527758_3530047_-\|ATP-dependent-Clp-protease-ATP-binding-subunit-ClpA	gnl\|CDD\|236828	PRK11034, clpA, ATP-dependent Clp protease ATP-binding subunit; Provisional.	0
NZ_CP014007.1\|WP_064567531.1\|3520801_3521980_-\|acetyl-CoA-C-acetyltransferase	gnl\|CDD\|180261	PRK05790, PRK05790, putative acyltransferase; Provisional.	0
NZ_CP014007.1\|WP_064567527.1\|3519675_3520119_+\|DUF2384-domain-containing-protein	gnl\|CDD\|131346	TIGR02293, conserved_protein_of_unknown_function, putative toxin-antitoxin system antitoxin component, TIGR02293 family. Proteins in this family are found almost exclusively in the Proteobacteria, but also in Gloeobacter violaceus PCC 7421, a cyanobacterium. This family was proposed by Makarova, et al. (2009) to be the antitoxin component of a new class of type 2 toxin-antitoxin system, or addiction module. [Cellular processes, Other].	1.89991e-44
NZ_CP014007.1\|WP_064567535.1\|3522632_3523289_-\|acetate-CoA-transferase-subunit-alpha	gnl\|CDD\|182146	PRK09920, PRK09920, acetyl-CoA:acetoacetyl-CoA transferase subunit alpha; Provisional.	1.40401e-117
NZ_CP014007.1\|WP_064567542.1\|3525051_3526356_-\|citrate-transporter	gnl\|CDD\|225407	COG2851, CitM, H+/citrate symporter [Energy production and conversion].	1.719e-137
NZ_CP014007.1\|WP_000228469.1\|3511870_3512365_-\|leucine-responsive-transcriptional-regulator-Lrp	gnl\|CDD\|183009	PRK11169, PRK11169, leucine-responsive transcriptional regulator Lrp.	1.61477e-117
NZ_CP014007.1\|WP_064567539.1\|3523676_3525017_-\|DUF1446-domain-containing-protein	gnl\|CDD\|377804	pfam07287, AtuA, Acyclic terpene utilisation family protein AtuA. This family consists of several bacterial and plant proteins of around 400 residues in length. One member of this family has been characterized in Pseudomonas citronellolis as AtuA, a member of a gene cluster that is essential for the acyclic terpene utilisation (Atu) pathway.	0
NZ_CP014007.1\|WP_001040187.1\|3518553_3518772_+\|translation-initiation-factor-IF-1	gnl\|CDD\|178954	PRK00276, infA, translation initiation factor IF-1; Validated.	8.41354e-49
NZ_CP014007.1\|WP_064567544.1\|3526773_3527712_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|176131	cd08440, PBP2_LTTR_like_4, TThe C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator, contains the type 2 periplasmic binding fold. LysR-transcriptional regulators comprise the largest family of prokaryotic transcription factor. Homologs of some of LTTRs with similar domain organizations are also found in the archaea and eukaryotic organisms. The LTTRs are composed of two functional domains joined by a linker helix involved in oligomerization: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal substrate-binding domain, which is structurally homologous to the type 2 periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcriptional repressor undergoes a conformational change upon substrate binding which in turn changes the DNA binding affinity of the repressor. The genes controlled by the LTTRs have diverse functional roles including amino acid biosynthesis, CO2 fixation, antibiotic resistance, degradation of aromatic compounds, nodule formation of nitrogen-fixing bacteria, and synthesis of virulence factors, to a name a few. This substrate-binding domain shows significant homology to the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	8.36684e-49
NZ_CP014007.1\|WP_064567519.1\|3512889_3513855_+\|thioredoxin-disulfide-reductase	gnl\|CDD\|182343	PRK10262, PRK10262, thioredoxin reductase; Provisional.	0
NZ_CP014007.1\|WP_064567523.1\|3515737_3517459_+\|cysteine/glutathione-ABC-transporter-ATP-binding-protein/permease-CydC	gnl\|CDD\|236865	PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed.	0
NZ_CP014007.1\|WP_064567521.1\|3513970_3515737_+\|cysteine/glutathione-ABC-transporter-permease/ATP-binding-protein-CydD	gnl\|CDD\|236870	PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed.	0
NZ_CP014007.1\|WP_064567529.1\|3520115_3520589_+\|RES-domain-containing-protein	gnl\|CDD\|227941	COG5654, COG5654, Uncharacterized conserved protein [Function unknown].	1.96852e-30
NZ_CP014007.1\|WP_064567525.1\|3517565_3518270_+\|leucyl/phenylalanyl-tRNA--protein-transferase	gnl\|CDD\|234720	PRK00301, aat, leucyl/phenylalanyl-tRNA--protein transferase; Reviewed.	2.73696e-139
NZ_CP014007.1\|WP_064567511.1\|3504931_3506275_-\|replication-associated-recombination-protein-RarA	gnl\|CDD\|237355	PRK13342, PRK13342, recombination factor protein RarA; Reviewed.	0
NZ_CP014007.1\|WP_064567533.1\|3521961_3522633_-\|CoA-transferase-subunit-B	gnl\|CDD\|188219	TIGR02428, 3-oxoadipate_CoA-transferase_subunit_B, 3-oxoacid CoA-transferase, B subunit. Various members of this family are characterized as the B subunits of succinyl-CoA:3-ketoacid-CoA transferase (EC 2.8.3.5), beta-ketoadipate:succinyl-CoA transferase (EC 2.8.3.6), acetyl-CoA:acetoacetate CoA transferase (EC 2.8.3.8), and butyrate-acetoacetate CoA-transferase (EC 2.8.3.9). This represents a very distinct clade with strong sequence conservation within the larger family defined by pfam01144. The A subunit represents a different clade in pfam01144.	1.07292e-112
NZ_CP014007.1\|WP_064567513.1\|3506284_3506896_-\|outer-membrane-lipoprotein-chaperone-LolA	gnl\|CDD\|129638	TIGR00547, Outer-membrane_lipoprotein_carrier_protein, periplasmic chaperone LolA. This protein, LolA, is known so far only in the gamma and beta subdivisions of the Proteobacteria. The E. coli major outer lipoprotein (Lpp) of E. coli is released from the inner membrane as a complex with this chaperone in an energy-requiring process, and is then delivered to LolB for insertion into the outer membrane. LolA is involved in the delivery of lipoproteins generally, rather than just Lpp, and is an essential protein in E. coli, unlike Lpp itself. [Protein fate, Protein and peptide secretion and trafficking].	2.05656e-118

>NZ_CP014007.1|WP_001040187.1|3518553_3518772_+|translation-initiation-factor-IF-1
MAKEDNIEMQGTVLETLPNTMFRVELENGHVVTAHISGKMRKNYIRILTGDKVTVELTPYDLSKGRIVFRSR
>NZ_CP014007.1|WP_064567525.1|3517565_3518270_+|leucyl/phenylalanyl-tRNA--protein-transferase
MRLVQLSRHSIAFPSPEAALREPNGLLALGGDLSPARLLMAYQRGIFPWFSPGDPILWWSPDPRAVLWPQTFHISRSMKRFHKSSPYRVTLNHAFGKVIDGCAQDRDEGTWITSDIVMAYHRLHELGHAHSIEVWEGDELVGGMYGVAQGLLFCGESMFSRRINASKTALLVFCDEFLRQGGKLIDCQVLNNHTASLGAIEIPRRDYLLQLAELRAIPLPSHFWVPRTLFLSPE
>NZ_CP014007.1|WP_064567523.1|3515737_3517459_+|cysteine/glutathione-ABC-transporter-ATP-binding-protein/permease-CydC
MRALLPYLALYKRHKWMLLLGVLLAIVTLLASIGLLTLSGWFLSASAVVGVAGLYSFNYMLPAAGVRGAAITRTAGRYFERLVSHEATFRVLEHLRVATFSKLLPLSPAGLARFRQGELLNRVVADVDTLDHLYLRVISPLIGALVVILVVMVGLSVLDVSLALMLGGIMLATLLILPPLFYRAGKPTGESLTAMRGQYRQQLTSWLQGQAELTIFGASQRYREQLENTELNWHDAQRRQSDLSAISQALMLLISGVAVIVMLWFASGDVGGNTQPGALIALFVFCALAAFEALAPVTGAFQHLGQVIASATRITQITDCPPDVTFPQSSMSVPEHVAVQFKDLAFSYPGQPQRALENIALSIAAGEHVAILGRTGCGKSTLLQLLTRAWDPQQGEIRLNDMMLSDVDEATLRSLISMVPQRVHLFSATLRDNLLLAAPQASDETLSAMLTRVGLEKLLDDGGLNAWLGEGGRQLSGGELRRLAIARALLHDAPLVLLDEPTEGLDAETESQVLELLREEMKDKTLLMVTHRLRGLAFFDRIIVMDNGQIIEQGNHAALMAKQGRYYQFKQRL
>NZ_CP014007.1|WP_064567521.1|3513970_3515737_+|cysteine/glutathione-ABC-transporter-permease/ATP-binding-protein-CydD
MNKTRQQELTRWLKQQSIISRRWLMLSRLLGVVSGALIVAQAWILARILNHMIMENIPREALLLPFTLLVLIFILRSWVVWLRERVGFHAGAHIRFEIRRHVLDRLHQAGPAWIQGKPAGSWATLVLEQIDDMHDFYARYLPQMALAASVPLLIVLTLFPINWAAALILLGTAPLIPLFMAMVGMGAADANRRNFKALARLSGHFLDRLRGMETLRIFGRGEAETESIRRASQDFRSRTMEVLRLAFLSSGVLEFFASLSIALVAVYFGFSYLGELNFGHYGTGVTLFAGFLALVLAPEFFQPLRDLGTFYHAKAQAIGAADSLKTFMEAPLAHPQRGETRLASDERVTLTAHNLIIKSAEGAKLAGPLNFTLAAGQRVVVVGKSGSGKSSLINVLSGFLPYEGSLRVNGIELSALEPDSWHEAISWVGQNPQLPATTLRENVLLARPNASAAELQAALDKAWVSEFLPLLPEGLETQPGDQAVRLSVGQAQRVAVARALLSPCKLLLLDEPSASLDAHSEQRVMQALTEASHQQTTLMVTHQLENLNQWDAIWVMQDGEIIEQGSYAELSTAQGTFADLLAHRQEEI
>NZ_CP014007.1|WP_064567519.1|3512889_3513855_+|thioredoxin-disulfide-reductase
MGTAKHSKLLILGSGPAGYTAAVYAARANLQPVLITGIEKGGQLTTTTEVENWPGDPHDLTGPLLMERMHEHAIKFDTEIIFDHINSVDLQNRPFRLTGDSGEYTCDALIIATGASARYLGLASEEAFKGRGVSACATCDGFFYRNQKVAVIGGGNTAVEEALYLANIASEVHLIHRRDTFRAEKILIKRLMDKVESGNIVLHTHRTLEEVTGDQMGVTGLRLRDTQNADNVESLDVAGLFVAIGHSPNTGIFEGQLALENGYIKVQSGIHGNATQTSIPGVFAAGDVMDHIYRQAITSAGTGCMAALDAERYLDGLAESK
>NZ_CP014007.1|WP_000228469.1|3511870_3512365_-|leucine-responsive-transcriptional-regulator-Lrp
MVDSKKRPGKDLDRIDRNILNELQKDGRISNVELSKRVGLSPTPCLERVRRLERQGFIQGYTALLNPHYLDASLLVFVEITLNRGAPDVFEQFNAAVQKLEEIQECHLVSGDFDYLLKTRVPDMSAYRKLLGETLLRLPGVNDTRTYVVMEEVKQSNRLVIKTR
>NZ_CP014007.1|WP_064567516.1|3507964_3511750_-|DNA-translocase-FtsK
MSQEYTEDKEVTLTKLSSGRRLLEALLILVSLSAVWLMAALLSFNPSDPSWSQTAWHEPIHNLGGVPGAWLADTLFFIFGVMAYTIPVIIIGGCWFAYRHRASEDYIDYFAVSLRMIGALALILTSCGLAAINADDIWYFASGGVIGSLLSTTLQPLLRSSGGTLALLCIWAAGLTLFTGWSWVTIAEKIGSVVLNILTFASNRTRRDDTWVDDDEYEDDEEYEEEKPRESRRARILRGALERRKRVAEKFANPRGRKTDEALFSGKRMDDAEDEIAYSARGVPADADDVLFSGHRATEAEQEYDPLLNGHSVTEPVVAAATATTAAVQAYAAPAEPYAPAMQQDVEWPYAQAPAIQVPPQAPHQPEQYVEVVQEAPYHSPQHATPEWQQPVAEEVWTPDAPVTPLPREEEVYAQQAQEPLPWQSEPQIAPAPEPIITPEPEPVVEEVKQTRPPLYYFEEVEEKRAREREQLAAWYQPIPEPAVEEPAAKPAVFPAPSATAVEPTVAPVAGGVQQATGHVSTAAAAAAPVFSLAGGAPRPQVKEGIGPQLPRPNRVRVPTRRELASYGIKLPSQRMAEERAREEEVRQHDDDEADMLQQNELARQFAATQQDRYGNEFQHEAPQFHPQHPVMSDEDEEEAELARQFAASQQQRYSVDQPAGAQAFMPEDFAFSPMKTLVDDGPHEPLFTPGVMPEPEPPVQQPQHYQQPAPPQYQQPAQPHYQPQAQQTVQQPTMPQQHQVAPQHQESLIHPLLMRNGDSRPVQKPTTPLPSLDLLTQPPVEVEPVDTFALEQMARLVEARLADFRIKADVVNYSPGPVITRFELNLAPGVKAARISNLSRDLARSLSTVAVRVVEVIPGKPYVGLELPNKKRQTVYLREVLDCVKFRESPSPLTVVLGKDIAGDPVIADLAKMPHLLVAGTTGSGKSVGVNAMILSMLYKATPEEVRFIMIDPKMLELSVYEGIPHLLTEVVTDMKDAANALRWSVNEMERRYKLMSALGVRNLAGYNEKIAEAARMGRPIPDPYWKPGDSMDVQHPVLEKLPYIVVMVDEFADLMMTVGKKVEELIARLAQKARAAGIHLVLATQRPSVDVITGLIKANIPTRIAFTVSSKIDSRTILDQGGAESLLGMGDMLYSGPNSTSAPVRVHGAFVRDQEVHAVVQDWKARGRPQYVDGITSDSESEGGAGGGFDGGEDLDPLFDQAVNFVTEKRKASISGVQRQFRIGYNRAARIIEQMEAQGIVSEQGHNGNREVLAPPPFE
>NZ_CP014007.1|WP_064567515.1|3507227_3507896_+|hypothetical-protein
MNLKPFLFTFPFLITGCTVLDYHGYSHTTKYTPFPEKVEAPFLFCGNKFFQSDLFIYYLNKQNSNFSPEVTRITAVQNPQGLDYNNTVESPMSCKATFTYEDNHKESVLMTVQVKSIPRENDNFTFFGDQLGIHWLTAADLAEQAASKAERDKKIKKLKERIAYEEKNMKYICNDKTEYASGKIVTTSYSVSTPAECGNLPYVVDDRTVESLKDELWELKNR
>NZ_CP014007.1|WP_064567513.1|3506284_3506896_-|outer-membrane-lipoprotein-chaperone-LolA
MKKIVVTCAILASFVTSQVWADASSDLKSRLDKVSSFHASFTQKVTDGSGAAVQEGQGDLWVKRPNLFNWHMTQPDESVLVSDGKTLWFYNPFVEQATATWLKDATGNTPFMLIARNQASDWQQYNIEQKGDDFVLTPKGNNGNLKQFTINVGRDGTIHQFSAIEQDDQRSSYQLKSQQNGAVDPAKFTFTPPQGVTVDDQRK
>NZ_CP014007.1|WP_064567511.1|3504931_3506275_-|replication-associated-recombination-protein-RarA
MSNMSLDFSDNAFQPLAARMRPENLAQYIGQQHLLAAGKPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYANADVERISAVTSGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTITFIGATTENPSFELNSALLSRARVYLLKSLTTEDIEQVLTQAMEDKVRGYGGQDIVLPDETRRAIAELVGGDARRALNTLEMMADMAELDDAGKRVLKPTLLTEIAGERSARFDNKGDRFYDLISALHKSVRGSAPDAALYWYARIITAGGDPLYVARRCLAIASEDVGNADPRAMQVAISAWDCFTRVGPAEGERAIAQAIVYLACAPKSNAVYTAFKAALADARDRPDFDVPVHLRNAPTKLMKEMGYGQEYRYAHDEPNAYAAGEEYFPQELAQTRYYHPTNRGLEGKIGEKLAWLAEQDHKSPIKRYR
>NZ_CP014007.1|WP_064567527.1|3519675_3520119_+|DUF2384-domain-containing-protein
MRAWSPEQKSIENALWRFAGFPANRGLKLVQMLNEGLPVSILDNIHEWTEMSRSDILRVTGINERNVARRKSAGRTLTPEESERIARLVRVIDAAVQFFGSKKMAYEWLESPVRGLGNVAPISLIATESGALEVTDLIGRLEHGVFA
>NZ_CP014007.1|WP_064567529.1|3520115_3520589_+|RES-domain-containing-protein
MIFYRLVSRRYASEAWTGSGANQYGGRWNHKGHPAVYVASSVSLAALEMLVHVHSDTVLNQYGLFSINIPDKEIEYLDKQWLPPDWQENPAPLSTMDLGTAWLEANSAVALVLPSCVIPLENNALLNPLHPGFSKLLKSVQALPFSFDSRLVSQAER
>NZ_CP014007.1|WP_064567531.1|3520801_3521980_-|acetyl-CoA-C-acetyltransferase
MRDSVVIVSAKRTPIGKFSGSLAEIPAVMLGATTVRANLSELPTEIKIDEVFLGNVLQAGLGQNPAHQVTHHAGLPQTIPSFTVNKVCGSGLKTVVLGAQSILSGGNQTCIVGGMENMSAAPYLLSRARQGYRMGNGELTDVMIQDGLWCAFNQYHMGITAENIAKRYQISREEQDQVALASQQKAIAAIRAGHFKKEIVPVCVKYKKEMRQFDTDEYPRPETDAGSLAALRPAFDSAGTVTAGNASGINDAAATLVLMSEKAARAQGITPLARIKSWASAGVDASMMGLGPVPATQLALDKAGMNVSDLDLIEANEAFAAQYLAVARELKFRQDNVNVNGGAIALGHPIGASGARILVTLVHALQQQNKSTGLATLCIGGGQGIAVIIERI
>NZ_CP014007.1|WP_064567533.1|3521961_3522633_-|CoA-transferase-subunit-B
MNAKERIARRVAQELHDGDVANLGIGLPTLVANFLADGILVTLQSENGFLGLGPLEEVNANLVNAGGQPCGILPGAAIFDSCYSFSLIRGGHVDVCVLGGLQVDEQGNLANWMVPGKRVPGMGGAMDLVVGAKRVIIAMEHCAKNGEPKLLHRCHYPLTAAGKVSKVITEYAVFSFVNGEMVLDEISDLITLDELRACTEARFRLSENLKLAPAAEVTCAIPL
>NZ_CP014007.1|WP_064567535.1|3522632_3523289_-|acetate-CoA-transferase-subunit-alpha
MRNKKITAETFRELLCDGMHIMFGGFMGVGTPEYLVAEILRSGVKELTLIGNDTAFINKGIGPLISSGRVKKVIVSHIGTNQETGEKMISGELDVQLVPQGTLAEQIRAGGAGLGGFLTQTGLGTVVEENKQTLIIDGEKWLLEHPLRADLAILLADNADEAGNLTYNLTARNFNPVMALAADVVVAEVRNIDATGSIPPEHVVTPGALVDYLMMEEQ
>NZ_CP014007.1|WP_064567537.1|3523377_3523677_-|hypothetical-protein
MKLREIAHSRTGDKGNISNISLIAWRAEDYEILVEQVTAEKVKAWFGDIVHGEVIRYELPELGALNFVMHKALGGGVTRSLALDMHGKGLSSALLDMPI
>NZ_CP014007.1|WP_064567539.1|3523676_3525017_-|DUF1446-domain-containing-protein
MKTIRIGSGAGYAGDRIEPAVELAEKGELDYLVFECLAERTIALGQKQKQQDAGKGYNELLEARMRAVLPICHAKGVRIISNMGSANPVAAGQAVINVAAELGLPNFKVAVVTGDDVLSLIQTMALTLDEAGLTVSQFDKPLLSANAYLGATGLLEALSTGADVVIAGRVADPSLFLAAMMHEFNWAADDWHNLGQGTCIGHLLECAGQITGGYYADPGVKDVPELARLGFPLAEVSEDGSATITKVAGSGGLVTVDTCKEQLLYEIHRPERYLTPDVVADFSHVRFESAGTDRVAVTGATGSPRTDSLKVSVGYQDGFIGEGEISYAGPGAVNRGRLALDIVRERFAICGFKPEEARFDLIGVNALHGETRGQYSDPYEVRARVAARCATRAQAINIGNEVETLYTNGPAGGGGVMKSVKEILAMDSTLIPRHCVQHHVTVLESK
>NZ_CP014007.1|WP_064567542.1|3525051_3526356_-|citrate-transporter
MLALIGVLIIATLLFFIMSKRMSPLVALIVIPVIGALAAGCGTDTAKFVVEGITKLAPMAAMFVFAIAFFGVVTDAGMFDPIVRGILRFVGTNPVKIIIGTGILALIAHLDGNGAVTFLITVPTMLPLFNRLGMDKRILLGITALSAGVNFLPWTGPMIRASAALNVTTHDLFIPLIPAQVIGLVFMVAMGWYWGKREEKRLGAAHFTSAAGDFSHHKTLTEQEQALRRPHLFWVNISLVVAVIGTMVFTRISPTVAFMIALTLALIINYPNVEMQKERINAHAKAALMMASILFAAGAFTGIMGGAGMLKAMSHAAVEFMPNALASHIPFIVGLISMPLSMIFDPDSYYFGIMPVIAHTVDIMGIPAIQVAQASVLGQMTTGFPVSPLTPATFLLISLAGVDLADHQKFSIPVLWGASVIMTFAAALTGVFPL
>NZ_CP014007.1|WP_064567544.1|3526773_3527712_+|LysR-family-transcriptional-regulator
MNFSIKQLRAFLILSEADSFTQAARRFNLSQPAFSTLIASLEEEIGYRLFDRDTRRVSLNADGIHFLDLARKIVQSHDDAIGEIKTRAASNHSDITLAALPSLAVEWLPEILVKYSKAAPQSKVKLIDTQWDRCLKSLLDGQADMALTAGQPSLSTFNSILLFSDKFFLLCHRDHPLAQQSSVSLSQLGDYPFIGFSVGTSIRQYTDKLCENLAMNLDYHLEVRQLTTMMGLIAANYGISITTGLTLFQFNHKDIVILPFDDLALERAIYLVTQKGRQLAPRVASFAEFITCQAHMFATGRRSTCAGFKPQA
>NZ_CP014007.1|WP_064567546.1|3527758_3530047_-|ATP-dependent-Clp-protease-ATP-binding-subunit-ClpA
MLNQELELSLNMAFARAREHRHEFMTVEHLLLALLSNPSAREALEACSVDLVALRQELEAFIEQTTPVLPMSEEERDTQPTLSFQRVLQRAVFHVQSSGRSEVSGANVLVAIFSEQESQAAYLLRKHEVSRLDVVNFISHGTRKDEPGPSSDAGSSSSSQVNSEEQAGGEERMENFTTNLNQLARVGGIDPLIGRSKELERAVQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEIMADCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQLEQDNNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGKIRVMGSTTYQEFSNIFEKDRALARRFQKIDITEPSVEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDKAIDVIDEAGARARLMPVSKRKKTINVADIESVVARIARIPEKSVSQSDRDTLKNLGDRLKMLVFGQDKAIEALTEAIKMSRAGLGQDHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHPDVFNLLLQVMDNGTLTDNNGRKADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTEVIQQVVDKFIVELQVQLDQKGVSLEVSQEARNWLAEKGYDRAMGARPMARVIQDNLKKPLANELLFGSLVDGGQVTVTLNQEKDVLEYDFQSAQKHKPETAH

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP014007_2	2.7\|3519363\|32\|NZ_CP014007\|CRISPRCasFinder,CRT,PILER-CR	3519363-3519394	32	NZ_CP020444	Paracoccus yeei strain FDAARGOS_252 plasmid unnamed4, complete sequence	183656-183687	7	0.781
NZ_CP014007_2	2.6\|3519303\|32\|NZ_CP014007\|CRISPRCasFinder,CRT,PILER-CR	3519303-3519334	32	NZ_CP017355	Lactobacillus plantarum strain TMW 1.25 plasmid pL125-1, complete sequence	50570-50601	8	0.75
NZ_CP014007_2	2.6\|3519303\|32\|NZ_CP014007\|CRISPRCasFinder,CRT,PILER-CR	3519303-3519334	32	NZ_CP017365	Lactobacillus plantarum strain TMW 1.277 plasmid pL1277-2, complete sequence	10013-10044	8	0.75
NZ_CP014007_2	2.6\|3519303\|32\|NZ_CP014007\|CRISPRCasFinder,CRT,PILER-CR	3519303-3519334	32	NZ_CP031199	Lactobacillus brevis strain UCCLBBS449 plasmid pUCCLBBS449_A, complete sequence	29900-29931	8	0.75
NZ_CP014007_2	2.6\|3519303\|32\|NZ_CP014007\|CRISPRCasFinder,CRT,PILER-CR	3519303-3519334	32	NC_012551	Lactobacillus brevis plasmid pLB925A04, complete sequence	14931-14962	8	0.75
NZ_CP014007_2	2.1\|3519003\|32\|NZ_CP014007\|CRISPRCasFinder,CRT	3519003-3519034	32	MH673673	Thermus phage phiLo, complete genome	92696-92727	9	0.719
NZ_CP014007_2	2.6\|3519303\|32\|NZ_CP014007\|CRISPRCasFinder,CRT,PILER-CR	3519303-3519334	32	NZ_CP044332	Methylocystis parvus strain BRCS2 plasmid unnamed1, complete sequence	185784-185815	9	0.719
NZ_CP014007_2	2.7\|3519363\|32\|NZ_CP014007\|CRISPRCasFinder,CRT,PILER-CR	3519363-3519394	32	NZ_CP013105	Paraburkholderia caribensis strain MWAP64 plasmid 2, complete sequence	418553-418584	9	0.719
NZ_CP014007_2	2.7\|3519363\|32\|NZ_CP014007\|CRISPRCasFinder,CRT,PILER-CR	3519363-3519394	32	NC_007336	Cupriavidus pinatubonensis JMP134 megaplasmid, complete sequence	231758-231789	9	0.719
NZ_CP014007_2	2.2\|3519063\|32\|NZ_CP014007\|CRISPRCasFinder,CRT,PILER-CR	3519063-3519094	32	NZ_AP014579	Burkholderia sp. RPE67 plasmid p1, complete sequence	225300-225331	10	0.688
NZ_CP014007_2	2.2\|3519063\|32\|NZ_CP014007\|CRISPRCasFinder,CRT,PILER-CR	3519063-3519094	32	NC_016626	Burkholderia sp. YI23 plasmid byi_1p, complete sequence	19857-19888	10	0.688

1. spacer 2.7|3519363|32|NZ_CP014007|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP020444 (Paracoccus yeei strain FDAARGOS_252 plasmid unnamed4, complete sequence) position: , mismatch: 7, identity: 0.781

----atatcggtccagttccacgacggcgtgaatgt	CRISPR spacer
ctcgata----tgcagttccacgaaggcgtcaatgt	Protospacer
    ***    * *********** ***** *****

2. spacer 2.6|3519303|32|NZ_CP014007|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP017355 (Lactobacillus plantarum strain TMW 1.25 plasmid pL125-1, complete sequence) position: , mismatch: 8, identity: 0.75

ccagataacagaacgatcaagcgctgggttga	CRISPR spacer
gtacaccacacaacgatcatgcgctgggttca	Protospacer
 .* *. *** ******** ********** *

3. spacer 2.6|3519303|32|NZ_CP014007|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP017365 (Lactobacillus plantarum strain TMW 1.277 plasmid pL1277-2, complete sequence) position: , mismatch: 8, identity: 0.75

ccagataacagaacgatcaagcgctgggttga	CRISPR spacer
gtacaccacacaacgatcatgcgctgggttca	Protospacer
 .* *. *** ******** ********** *

4. spacer 2.6|3519303|32|NZ_CP014007|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP031199 (Lactobacillus brevis strain UCCLBBS449 plasmid pUCCLBBS449_A, complete sequence) position: , mismatch: 8, identity: 0.75

ccagataacagaacgatcaagcgctgggttga	CRISPR spacer
gtacaccacacaacgatcatgcgctgggttca	Protospacer
 .* *. *** ******** ********** *

5. spacer 2.6|3519303|32|NZ_CP014007|CRISPRCasFinder,CRT,PILER-CR matches to NC_012551 (Lactobacillus brevis plasmid pLB925A04, complete sequence) position: , mismatch: 8, identity: 0.75

ccagataacagaacgatcaagcgctgggttga	CRISPR spacer
gtacaccacacaacgatcatgcgctgggttca	Protospacer
 .* *. *** ******** ********** *

6. spacer 2.1|3519003|32|NZ_CP014007|CRISPRCasFinder,CRT matches to MH673673 (Thermus phage phiLo, complete genome) position: , mismatch: 9, identity: 0.719

cgtgaaatctcctccgacagcaatgggtgagt	CRISPR spacer
gaggaaatctcctccgactacaatggagggat	Protospacer
 . *************** .******. *..*

7. spacer 2.6|3519303|32|NZ_CP014007|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP044332 (Methylocystis parvus strain BRCS2 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.719

ccagataacagaacgatcaagcgctgggttga	CRISPR spacer
gtcgaccacagcacgatcaaccgctgggttct	Protospacer
 . **. **** ******** *********

8. spacer 2.7|3519363|32|NZ_CP014007|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013105 (Paraburkholderia caribensis strain MWAP64 plasmid 2, complete sequence) position: , mismatch: 9, identity: 0.719

atatcggtccagttccacgacggcgtgaatgt	CRISPR spacer
aggctgaaacagttcgacgacggcgggaatgt	Protospacer
* ...*.  ****** ********* ******

9. spacer 2.7|3519363|32|NZ_CP014007|CRISPRCasFinder,CRT,PILER-CR matches to NC_007336 (Cupriavidus pinatubonensis JMP134 megaplasmid, complete sequence) position: , mismatch: 9, identity: 0.719

atatcggtccagttccacgacggcgtgaatgt	CRISPR spacer
gtctcggtccagtacctcgacggcgtccggtt	Protospacer
.* ********** ** *********  .  *

10. spacer 2.2|3519063|32|NZ_CP014007|CRISPRCasFinder,CRT,PILER-CR matches to NZ_AP014579 (Burkholderia sp. RPE67 plasmid p1, complete sequence) position: , mismatch: 10, identity: 0.688

taatgagtaagccggtttcgtgcggcgcgttg	CRISPR spacer
acgaggacaagtcggtttcgttcggcgcgttc	Protospacer
  . *...***.********* *********

11. spacer 2.2|3519063|32|NZ_CP014007|CRISPRCasFinder,CRT,PILER-CR matches to NC_016626 (Burkholderia sp. YI23 plasmid byi_1p, complete sequence) position: , mismatch: 10, identity: 0.688

taatgagtaagccggtttcgtgcggcgcgttg	CRISPR spacer
acgaggacaagtcggtttcgttcggcgcgttc	Protospacer
  . *...***.********* *********

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1304140 : 1370881

Escherichia_phage(24.39%)

integrase,holin,tail,plate,tRNA

attL 1302072:1302088|attR 1383446:1383462

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1302072:1302088	attL	NA	NA	NA	NA
WP_007370710.1\|1304140_1304908_+\|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	NA	NA	NA	NA
WP_012134695.1\|1304952_1305300_+	50S ribosomal protein L19	NA	NA	NA	NA
WP_071892616.1\|1305456_1305648_-	late control protein B	Q37973	Salmonella_virus	1.3e-20	72.9
WP_064564398.1\|1305722_1306865_-	phage late control D family protein	Q7Y4C6	Escherichia_virus	6.6e-107	52.6
WP_064564400.1\|1306861_1307323_-\|tail	phage tail protein	A0A0F7LBX3	Escherichia_phage	1.6e-48	63.4
WP_064564402.1\|1307319_1309032_-\|tail	phage tail tape measure protein	S4TP64	Salmonella_phage	7.5e-30	38.8
WP_071777697.1\|1309024_1309144_-\|tail	GpE family phage tail protein	A0A0F7LCR6	Escherichia_phage	2.6e-14	89.7
WP_007370715.1\|1309176_1309458_-\|tail	phage tail assembly protein	A0A0F7LDQ8	Escherichia_phage	2.7e-30	79.5
WP_007370716.1\|1309520_1310039_-\|tail	phage major tail tube protein	Q858V0	Yersinia_virus	4.5e-87	90.1
WP_064564404.1\|1310051_1311233_-\|tail	phage tail sheath protein	S4TRX2	Salmonella_phage	2.1e-201	88.0
WP_064564406.1\|1311361_1311955_-\|tail	phage tail protein	M1SV83	Escherichia_phage	7.8e-43	49.2
WP_064564408.1\|1311954_1313031_-\|tail	phage tail protein	M1TAS6	Escherichia_phage	9.6e-116	49.3
WP_064564410.1\|1313228_1313825_-\|tail	tail fiber assembly protein	A0A218M4J2	Erwinia_phage	5.2e-63	58.4
WP_064564412.1\|1313824_1314880_-\|tail	phage tail protein	M1TAS6	Escherichia_phage	5.3e-111	47.7
WP_064564414.1\|1315034_1315985_-\|tail	phage tail protein	A0A2I8TVA9	Erwinia_phage	5.4e-78	76.7
WP_064564416.1\|1316139_1316748_-\|tail	phage tail protein I	A0A218M4J3	Erwinia_phage	3.1e-87	76.5
WP_064564418.1\|1316740_1317649_-\|plate	baseplate assembly protein	A0A218M4K5	Erwinia_phage	2.2e-129	78.8
WP_007370726.1\|1317653_1318001_-\|plate	baseplate assembly protein	A0A0F7LDQ1	Escherichia_phage	2.8e-40	73.0
WP_035888404.1\|1317997_1318633_-\|plate	phage baseplate assembly protein V	A0A0F7LDY9	Escherichia_phage	4.4e-92	80.1
WP_064564420.1\|1318720_1319188_-\|tail	phage tail protein	A0A0F7LA33	Escherichia_phage	9.8e-49	60.8
WP_064564422.1\|1319283_1319709_-	protein lysB	A0A218M4K2	Erwinia_phage	3.9e-28	54.6
WP_064564424.1\|1319705_1320215_-	lysozyme	A0A218M4K3	Erwinia_phage	7.8e-68	76.8
WP_064564426.1\|1320198_1320420_-\|holin	holin	A0A218M4L5	Erwinia_phage	5.0e-11	43.8
WP_064564428.1\|1320410_1320614_-\|tail	tail protein X	Q858W3	Yersinia_virus	1.6e-19	68.2
WP_035888419.1\|1320812_1320998_-	hypothetical protein	A0A0M5M1G5	Salmonella_phage	6.0e-10	55.7
WP_082934081.1\|1321085_1323044_-	replication endonuclease	A0A218M4H2	Erwinia_phage	2.7e-265	71.9
WP_064564430.1\|1323044_1323266_-	hypothetical protein	Q6K1F5	Salmonella_virus	1.2e-20	69.0
WP_064564432.1\|1323265_1323493_-	DUF2732 family protein	A0A218M4I9	Erwinia_phage	3.8e-06	46.8
WP_043952638.1\|1323559_1323898_-	DUF5347 domain-containing protein	A0A218M4I7	Erwinia_phage	1.1e-38	69.4
WP_007370740.1\|1323936_1324314_-	hypothetical protein	A0A0M4R4X7	Salmonella_phage	6.0e-41	69.2
WP_064568968.1\|1324429_1325278_+	phage repressor protein CI	Q6K1G0	Salmonella_virus	9.6e-95	61.9
WP_064564434.1\|1325284_1326334_+\|integrase	site-specific integrase	A0A0M4S6G4	Salmonella_phage	1.5e-153	73.6
WP_064564436.1\|1326495_1326933_+	DUF2946 domain-containing protein	NA	NA	NA	NA
WP_064564438.1\|1326995_1328360_+	PepSY domain-containing protein	NA	NA	NA	NA
WP_064564440.1\|1328540_1329611_+	3-deoxy-7-phosphoheptulonate synthase AroF	A0A0F6R6T6	Escherichia_coli_O157_typing_phage	4.8e-91	51.8
WP_064564442.1\|1329620_1330742_+	bifunctional chorismate mutase/prephenate dehydrogenase	NA	NA	NA	NA
WP_064564444.1\|1330809_1331682_+	SMP-30/gluconolactonase/LRE family protein	NA	NA	NA	NA
WP_064564446.1\|1331678_1332839_-	bifunctional chorismate mutase/prephenate dehydratase	NA	NA	NA	NA
WP_007370750.1\|1333086_1333425_-	ribosome-associated translation inhibitor RaiA	NA	NA	NA	NA
WP_043952646.1\|1333689_1334427_-	outer membrane protein assembly factor BamD	NA	NA	NA	NA
WP_064564448.1\|1334558_1335539_+	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	NA	NA	NA	NA
WP_064564452.1\|1335535_1336267_+	polyphenol oxidase	NA	NA	NA	NA
WP_064564454.1\|1336396_1338970_+	ATP-dependent chaperone ClpB	H6X3M6	Enterobacteria_phage	8.4e-126	34.9
WP_064564456.1\|1344701_1346000_+	MFS transporter	Q6JIH2	Burkholderia_virus	1.8e-44	31.7
WP_064564458.1\|1345996_1346320_-	YfiM family lipoprotein	NA	NA	NA	NA
WP_064564460.1\|1346365_1347721_-	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA
WP_064564463.1\|1347834_1350495_-	protein lysine acetyltransferase	NA	NA	NA	NA
WP_064564465.1\|1350527_1351226_-	DTW domain-containing protein	NA	NA	NA	NA
WP_007370763.1\|1351295_1351715_-	thioredoxin TrxC	A0A1J0GW78	Streptomyces_phage	2.0e-13	41.5
WP_064564467.1\|1351921_1353019_+\|tRNA	tRNA/rRNA methyltransferase	NA	NA	NA	NA
WP_064564469.1\|1353063_1353753_-	uracil-DNA glycosylase	A0A172DS90	Canid_alphaherpesvirus	6.0e-55	48.4
WP_007370766.1\|1354065_1354449_+	autonomous glycyl radical cofactor GrcA	A0A193GZ98	Escherichia_phage	3.1e-32	71.8
WP_064564471.1\|1354491_1355820_-	ATP-dependent RNA helicase SrmB	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	1.3e-42	30.4
WP_064564473.1\|1355949_1356687_+\|tRNA	tRNA1(Val) (adenine(37)-N6)-methyltransferase	NA	NA	NA	NA
WP_064564475.1\|1356671_1358294_-	L-aspartate oxidase	NA	NA	NA	NA
WP_007370770.1\|1358714_1359290_+	RNA polymerase sigma factor RpoE	NA	NA	NA	NA
WP_064564477.1\|1359321_1359975_+	anti-sigma-E factor RseA	NA	NA	NA	NA
WP_064564479.1\|1359974_1360928_+	sigma-E factor regulatory protein RseB	NA	NA	NA	NA
WP_007370773.1\|1360924_1361404_+	SoxR-reducing system protein RseC	NA	NA	NA	NA
WP_043952662.1\|1361549_1363349_+	elongation factor 4	E4ZFJ7	Streptococcus_phage	7.2e-23	25.2
WP_064564481.1\|1363364_1364339_+	signal peptidase I	NA	NA	NA	NA
WP_007370776.1\|1364551_1365232_+	ribonuclease III	E5EQH1	Micromonas_sp._RCC1109_virus	1.3e-20	33.5
WP_064564483.1\|1365228_1366140_+	GTPase Era	NA	NA	NA	NA
WP_035888212.1\|1366262_1366970_+	DNA repair protein RecO	NA	NA	NA	NA
WP_064564485.1\|1367035_1367767_+	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA
WP_064564487.1\|1367766_1368147_+	holo-ACP synthase	NA	NA	NA	NA
WP_007370781.1\|1368143_1368404_-	YfhL family 4Fe-4S dicluster ferredoxin	A0A1B1IWY9	uncultured_Mediterranean_phage	1.1e-17	52.3
WP_007370782.1\|1368460_1369309_-	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA
WP_043952667.1\|1369668_1370304_+	phosphatidylglycerophosphatase C	NA	NA	NA	NA
WP_064564489.1\|1370362_1370881_+\|tRNA	tRNA adenosine(34) deaminase TadA	S4VYT2	Pandoravirus	2.5e-05	33.6
1383446:1383462	attR	NA	NA	NA	NA

DBSCAN-SWA_2

1551069 : 1622771

Tetraselmis_virus(16.67%)

plate,holin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_064564692.1\|1551069_1552611_+\|holin	choline-sulfatase	A0A2P0VMN7	Tetraselmis_virus	2.7e-10	22.4
WP_064564694.1\|1552613_1553558_+\|holin	choline ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_064564696.1\|1553854_1554943_+	YncE family protein	NA	NA	NA	NA
WP_064564698.1\|1554994_1557208_+	TonB-dependent siderophore receptor	NA	NA	NA	NA
WP_064564700.1\|1557204_1558104_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_064564702.1\|1558200_1558725_+	N-acetyltransferase	NA	NA	NA	NA
WP_007370964.1\|1560410_1560671_+	DUF2534 family protein	NA	NA	NA	NA
WP_064564703.1\|1560958_1562899_+	methyl-accepting chemotaxis protein	NA	NA	NA	NA
WP_064564705.1\|1562913_1563300_-	hypothetical protein	NA	NA	NA	NA
WP_064564707.1\|1563446_1564844_+	phenylalanine transporter	NA	NA	NA	NA
WP_064564709.1\|1565050_1565920_+	EamA family transporter	NA	NA	NA	NA
WP_064564711.1\|1565908_1566706_-	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA
WP_064564713.1\|1566771_1568190_-	MFS transporter	NA	NA	NA	NA
WP_064564715.1\|1568298_1569171_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_064564717.1\|1569145_1569532_-	MmcQ/YjbR family DNA-binding protein	NA	NA	NA	NA
WP_043952805.1\|1569521_1570112_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_064564719.1\|1570304_1571405_+	MBL fold metallo-hydrolase	NA	NA	NA	NA
WP_043952807.1\|1571443_1571785_+	RamA family antibiotic efflux transcriptional regulator	NA	NA	NA	NA
WP_064564721.1\|1571824_1572217_-	putative DNA-binding transcriptional regulator	NA	NA	NA	NA
WP_064564722.1\|1572218_1572578_-	putative DNA-binding transcriptional regulator	NA	NA	NA	NA
WP_064564724.1\|1573199_1575389_+	EAL domain-containing protein	NA	NA	NA	NA
WP_007370980.1\|1575432_1576620_-	NupC/NupG family nucleoside CNT transporter	NA	NA	NA	NA
WP_064564726.1\|1576974_1578213_+	Nramp family divalent metal transporter	NA	NA	NA	NA
WP_043952812.1\|1578290_1578611_-	DUF2502 domain-containing protein	NA	NA	NA	NA
WP_064564728.1\|1578733_1579732_-	L-glyceraldehyde 3-phosphate reductase	NA	NA	NA	NA
WP_064564730.1\|1579913_1581557_+	indolepyruvate decarboxylase	NA	NA	NA	NA
WP_064564732.1\|1581560_1582796_-	ion channel protein	NA	NA	NA	NA
WP_064564734.1\|1582974_1583940_+	glucokinase	NA	NA	NA	NA
WP_064564736.1\|1583936_1584665_-	response regulator transcription factor	A0A2R2ZGH8	Clostridioides_phage	1.9e-14	26.9
WP_071892631.1\|1584677_1586360_-	sensor histidine kinase	NA	NA	NA	NA
WP_064564740.1\|1586748_1587990_+	alanine transaminase	NA	NA	NA	NA
WP_099458783.1\|1588039_1588111_-	membrane protein YpdK	NA	NA	NA	NA
WP_064564742.1\|1588680_1590204_+	histidine ammonia-lyase	A0A1V0S940	Catovirus	1.7e-81	39.1
WP_139227903.1\|1590299_1590941_+	DNA-binding protein	NA	NA	NA	NA
WP_064564746.1\|1591527_1592025_+	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA
WP_064564748.1\|1592058_1593606_+	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA
WP_064564750.1\|1593624_1594974_+\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA
WP_064564752.1\|1594970_1595696_+	DotU family type IV/VI secretion system protein	NA	NA	NA	NA
WP_064564754.1\|1595695_1597372_+	OmpA family protein	NA	NA	NA	NA
WP_043952827.1\|1597386_1597878_+	Hcp family type VI secretion system effector	NA	NA	NA	NA
WP_064564756.1\|1598047_1600687_+	type VI secretion system ATPase TssH	K4FB40	Cronobacter_phage	6.0e-95	32.9
WP_064564758.1\|1600738_1601554_+	DUF1311 domain-containing protein	NA	NA	NA	NA
WP_064564760.1\|1601625_1603983_+	type VI secretion system tip protein VgrG	NA	NA	NA	NA
WP_064564762.1\|1603994_1606406_+	hypothetical protein	A0A059VA40	Pseudomonas_phage	3.7e-14	33.3
WP_064564764.1\|1606402_1606810_+	hypothetical protein	NA	NA	NA	NA
WP_071892638.1\|1608599_1608863_+	PAAR domain-containing protein	R9U4D0	Rhizobium_phage	2.8e-05	50.0
WP_064564768.1\|1608866_1610027_+	hypothetical protein	NA	NA	NA	NA
WP_064564770.1\|1610052_1613433_+	type VI secretion protein VasK	NA	NA	NA	NA
WP_064564772.1\|1613434_1615045_+	type VI secretion system protein TssA	NA	NA	NA	NA
WP_064564774.1\|1615099_1616869_+\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
WP_064564776.1\|1616832_1617912_+\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA
WP_064564778.1\|1617933_1618458_+	type VI secretion system lipoprotein TssJ	NA	NA	NA	NA
WP_082934140.1\|1618469_1620941_+	type VI secretion system tip protein VgrG	NA	NA	NA	NA
WP_064564780.1\|1620940_1621810_+	hypothetical protein	NA	NA	NA	NA
WP_064564784.1\|1622321_1622771_+\|plate	type VI secretion system baseplate subunit TssE	NA	NA	NA	NA

DBSCAN-SWA_3

1815656 : 1824041

Enterobacteria_phage(66.67%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_064565011.1\|1815656_1816604_+	ABC transporter ATP-binding protein	F2Y1V5	Organic_Lake_phycodnavirus	8.1e-10	26.1
WP_064565013.1\|1816587_1817325_+	ABC transporter permease	NA	NA	NA	NA
WP_007371202.1\|1817299_1817413_-	protein YohO	NA	NA	NA	NA
WP_064565015.1\|1817471_1818203_-	HTH-type transcriptional regulator MlrA	Q9EYF2	Enterobacteria_phage	2.1e-82	73.9
WP_043956827.1\|1818423_1820112_+	sensor histidine kinase	Q9EYF3	Enterobacteria_phage	4.2e-259	84.7
WP_064565017.1\|1820105_1820825_+	two-component system response regulator BtsR	NA	NA	NA	NA
WP_064565019.1\|1820877_1821354_+	DUF1456 family protein	Q9EYF4	Enterobacteria_phage	1.4e-63	78.8
WP_052502010.1\|1821482_1821938_-	YehR family lipoprotein	Q9EYF5	Enterobacteria_phage	1.7e-29	44.9
WP_064565021.1\|1822007_1824041_-\|tRNA	methionine--tRNA ligase	A0A1V0SDF2	Indivirus	2.6e-53	27.8

DBSCAN-SWA_4

1897771 : 1904126

Enterobacteria_phage(66.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_064565115.1\|1897771_1899187_+	colanic acid biosynthesis protein WcaM	A0A291LBB9	Klebsiella_phage	2.4e-18	31.2
WP_007371272.1\|1899373_1900267_+	GalU regulator GalF	A0A127AW70	Bacillus_phage	1.3e-44	41.2
WP_064565118.1\|1900667_1901750_+	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	1.6e-102	54.5
WP_064565120.1\|1901752_1902652_+	dTDP-4-dehydrorhamnose reductase	A0A140G5S3	Enterobacteria_phage	2.8e-28	33.4
WP_064565122.1\|1902696_1903575_+	glucose-1-phosphate thymidylyltransferase RfbA	I7I009	Enterobacteria_phage	9.6e-106	63.8
WP_064565124.1\|1903577_1904126_+	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	1.6e-50	54.4

DBSCAN-SWA_5

2030861 : 2071938

Enterobacteria_phage(32.43%)

portal,holin,integrase,protease,tail,terminase,lysis

attL 2029140:2029199|attR 2074531:2074592

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2029140:2029199	attL	NA	NA	NA	NA
WP_064568987.1\|2030861_2031887_-\|integrase	tyrosine-type recombinase/integrase	A0A192Y7M7	Salmonella_phage	3.5e-91	53.3
WP_071892656.1\|2031819_2032104_-	DUF4224 domain-containing protein	NA	NA	NA	NA
WP_064565377.1\|2032174_2034319_-	exonuclease	S4TNL0	Salmonella_phage	6.2e-90	41.2
WP_064565380.1\|2034459_2034816_-	Rrf2 family transcriptional regulator	NA	NA	NA	NA
WP_007371408.1\|2034850_2035036_-	DUF1482 family protein	NA	NA	NA	NA
WP_064568988.1\|2035302_2035800_+	hypothetical protein	NA	NA	NA	NA
WP_035886338.1\|2036140_2036524_-	helix-turn-helix domain-containing protein	K7PH71	Enterobacterial_phage	4.7e-17	58.3
WP_071892659.1\|2036629_2036842_+	helix-turn-helix transcriptional regulator	A0A077K9X2	Edwardsiella_phage	2.9e-16	60.6
WP_064565383.1\|2036844_2037399_+	hypothetical protein	NA	NA	NA	NA
WP_064565388.1\|2037454_2038447_+	DUF1376 domain-containing protein	A0A0U2RT81	Escherichia_phage	4.0e-92	53.8
WP_167351132.1\|2038415_2038904_+	replication protein	A0A0U2JGJ0	Escherichia_phage	1.1e-66	74.5
WP_064565391.1\|2039299_2042944_+	hypothetical protein	NA	NA	NA	NA
WP_064565394.1\|2043719_2043914_+	hypothetical protein	H6WRY8	Salmonella_phage	1.7e-15	60.3
WP_064565397.1\|2043910_2044279_+	RusA family crossover junction endodeoxyribonuclease	K7P6W0	Enterobacteria_phage	5.9e-41	64.0
WP_064565401.1\|2044263_2045316_+	DUF968 domain-containing protein	A0A291AWV9	Escherichia_phage	3.7e-104	53.7
WP_064565404.1\|2045330_2045747_+	antitermination protein Q	U5P0A5	Shigella_phage	4.0e-46	73.3
WP_139227910.1\|2045983_2046424_-	hypothetical protein	NA	NA	NA	NA
WP_007371424.1\|2046709_2047033_+\|holin	phage holin, lambda family	Q5G8R5	Enterobacteria_phage	1.5e-40	78.3
WP_064565410.1\|2047016_2047457_+	lysozyme	A0A0M4R365	Salmonella_phage	1.5e-54	74.5
WP_064565413.1\|2047453_2047921_+\|lysis	lysis protein	A0A2H4JHL8	uncultured_Caudovirales_phage	1.4e-39	62.6
WP_064565416.1\|2048006_2048375_+	hypothetical protein	NA	NA	NA	NA
WP_064565418.1\|2048473_2048692_+	hypothetical protein	NA	NA	NA	NA
WP_007371428.1\|2049160_2049649_+	DUF1441 family protein	K7PJY2	Enterobacterial_phage	4.3e-71	87.0
WP_064565421.1\|2049648_2051757_+\|terminase	phage terminase large subunit family protein	K7PH52	Enterobacterial_phage	0.0e+00	83.8
WP_064565424.1\|2051753_2051969_+	hypothetical protein	A5LH28	Enterobacteria_phage	3.4e-25	78.6
WP_064565427.1\|2051965_2053468_+\|portal	phage portal protein	K7PHM5	Enterobacterial_phage	1.5e-247	83.4
WP_071892668.1\|2053412_2055425_+\|protease	Clp protease ClpP	K7PKX4	Enterobacterial_phage	6.5e-307	77.6
WP_064565432.1\|2055505_2055829_+	DUF2190 family protein	K7PJY3	Enterobacterial_phage	3.2e-22	54.3
WP_007371434.1\|2055821_2056097_+	DNA breaking-rejoining protein	K7PH55	Enterobacterial_phage	2.0e-17	53.8
WP_064565435.1\|2056106_2056658_+\|tail	phage tail protein	K7P7A8	Enterobacteria_phage	9.4e-59	75.5
WP_064565438.1\|2056654_2057053_+	hypothetical protein	A0A0K2FIF4	Enterobacteria_phage	5.1e-38	57.6
WP_064565441.1\|2057063_2057798_+\|tail	phage tail protein	M9NYX0	Enterobacteria_phage	1.9e-75	74.1
WP_064565444.1\|2057833_2058241_+\|tail	phage minor tail protein G	K7PJY4	Enterobacterial_phage	2.3e-14	38.4
WP_064565449.1\|2058249_2058558_+\|tail	phage tail assembly protein T	A5LH37	Enterobacteria_phage	4.2e-24	56.4
WP_064565451.1\|2058538_2061040_+\|tail	phage tail tape measure protein	K7PKR0	Enterobacteria_phage	5.4e-146	39.5
WP_064565454.1\|2061042_2061390_+\|tail	phage tail protein	K7PJT2	Enterobacteria_phage	6.4e-37	67.0
WP_064565457.1\|2061386_2062142_+\|tail	phage minor tail protein L	K7PKU0	Enterobacteria_phage	1.0e-124	83.7
WP_064565460.1\|2062143_2062854_+	peptidase P60	K7PJX1	Enterobacterial_phage	1.3e-121	82.2
WP_064565463.1\|2062987_2063302_+	hypothetical protein	M1PRT9	Cellulophaga_phage	6.2e-31	68.9
WP_064565465.1\|2063364_2063964_+\|tail	tail assembly protein	K7PHE5	Enterobacteria_phage	1.5e-78	77.9
WP_064565468.1\|2064015_2067204_+	host specificity protein J	O64335	Escherichia_phage	0.0e+00	83.0
WP_064565471.1\|2067551_2068223_+	hypothetical protein	A0A1B2AP04	Escherichia_phage	5.1e-83	71.4
WP_064565474.1\|2068331_2068568_+	hypothetical protein	Q5G8V7	Enterobacteria_phage	1.4e-16	55.7
WP_082934142.1\|2069708_2070113_+	hypothetical protein	I7LEG3	Yersinia_phage	4.4e-29	48.8
WP_064565479.1\|2070247_2070670_+	translesion error-prone DNA polymerase V autoproteolytic subunit	A0A1W6JNS2	Morganella_phage	1.5e-35	58.1
WP_064565482.1\|2070672_2071938_+	Y-family DNA polymerase	I6RSM4	Salmonella_phage	5.8e-213	85.8
2074531:2074592	attR	NA	NA	NA	NA

DBSCAN-SWA_6

2283167 : 2350782

Tupanvirus(22.22%)

protease,plate

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_043953290.1\|2283167_2283737_+\|plate	type VI secretion system baseplate subunit TssE	NA	NA	NA	NA
WP_043953291.1\|2283739_2285611_+\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
WP_064565773.1\|2285607_2286651_+\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA
WP_064565775.1\|2286695_2289308_+	type VI secretion system ATPase TssH	A0A248SJW6	Salicola_phage	1.1e-80	31.0
WP_064565777.1\|2289334_2290774_+	protein kinase	M1HXR9	Acanthocystis_turfacea_Chlorella_virus	3.6e-09	27.3
WP_167351167.1\|2290863_2291304_+	DcrB-related protein	NA	NA	NA	NA
WP_064565781.1\|2291362_2293288_+	type VI secretion system tip protein VgrG	A0A077K8Q4	Ralstonia_phage	6.4e-46	28.7
WP_064565783.1\|2293300_2294107_+	DcrB-related protein	NA	NA	NA	NA
WP_064565785.1\|2294099_2295431_+	hypothetical protein	NA	NA	NA	NA
WP_064565787.1\|2295430_2296501_+	ADP-ribosylglycohydrolase family protein	A0A1S6UB21	Serratia_phage	2.1e-54	41.6
WP_139227916.1\|2296582_2296804_+	hypothetical protein	NA	NA	NA	NA
WP_064565791.1\|2296923_2297310_+	hypothetical protein	NA	NA	NA	NA
WP_064565795.1\|2298022_2298286_+	hypothetical protein	NA	NA	NA	NA
WP_064565796.1\|2298371_2298629_+	hypothetical protein	NA	NA	NA	NA
WP_043953302.1\|2298924_2300574_-	fumarate hydratase	NA	NA	NA	NA
WP_064565798.1\|2300625_2302137_-	anion permease	NA	NA	NA	NA
WP_064565800.1\|2302774_2305552_+	flavocytochrome c	A0A2P0ZL82	Lactobacillus_phage	7.1e-70	31.9
WP_064565802.1\|2305715_2306678_+	FAD:protein FMN transferase	NA	NA	NA	NA
WP_043953306.1\|2306658_2307378_-	two-component system response regulator DcuR	NA	NA	NA	NA
WP_064565804.1\|2307374_2308991_-	two-component system sensor histidine kinase DcuS	NA	NA	NA	NA
WP_064565805.1\|2309167_2310082_+	N-acetylmuramic acid 6-phosphate etherase	NA	NA	NA	NA
WP_064565807.1\|2310341_2312012_+	malate dehydrogenase (quinone)	NA	NA	NA	NA
WP_064565809.1\|2312051_2313401_-	MFS transporter	NA	NA	NA	NA
WP_064565811.1\|2313810_2314509_+	glutamine amidotransferase	A0A2K9L2L9	Tupanvirus	4.3e-08	27.3
WP_139227896.1\|2314488_2314722_-	hypothetical protein	NA	NA	NA	NA
WP_035888626.1\|2314736_2315564_+	nitrogenase iron protein	NA	NA	NA	NA
WP_064565813.1\|2315608_2317180_+	nitrogenase iron-iron protein, alpha chain	NA	NA	NA	NA
WP_064565815.1\|2317176_2317521_+	Fe-only nitrogenase subunit delta	NA	NA	NA	NA
WP_064565817.1\|2317532_2318921_+	Fe-only nitrogenase subunit beta	NA	NA	NA	NA
WP_064565819.1\|2318964_2319387_+	hypothetical protein	NA	NA	NA	NA
WP_064565821.1\|2319383_2319878_+	pyridoxamine 5'-phosphate oxidase family protein	NA	NA	NA	NA
WP_064565823.1\|2319890_2320502_+	hypothetical protein	NA	NA	NA	NA
WP_082934145.1\|2320672_2322277_+	sigma 54-interacting transcriptional regulator	NA	NA	NA	NA
WP_064565826.1\|2322772_2323576_+\|protease	serine protease	G9E4M4	Emiliania_huxleyi_virus	3.3e-12	28.9
WP_064565828.1\|2323607_2325344_-	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA
WP_064565831.1\|2325617_2327138_+	aldehyde dehydrogenase	NA	NA	NA	NA
WP_035888619.1\|2327165_2328197_+	alcohol dehydrogenase AdhP	A0A2K9L339	Tupanvirus	1.8e-34	28.1
WP_064565834.1\|2328237_2329119_-	alpha/beta hydrolase	NA	NA	NA	NA
WP_007371738.1\|2329202_2329556_+	MerR family transcriptional regulator	NA	NA	NA	NA
WP_043953322.1\|2329594_2330605_-	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA
WP_064565836.1\|2330683_2331664_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_064565838.1\|2331841_2332051_+	hypothetical protein	NA	NA	NA	NA
WP_064565840.1\|2332391_2334575_-	catalase/peroxidase HPI	NA	NA	NA	NA
WP_156525210.1\|2334742_2335684_-	hypothetical protein	NA	NA	NA	NA
WP_064565844.1\|2336226_2336781_-	hypothetical protein	NA	NA	NA	NA
WP_064565846.1\|2337301_2339812_-	type VI secretion system ATPase TssH	K4FB40	Cronobacter_phage	3.9e-83	34.5
WP_064565847.1\|2339831_2343260_-	hypothetical protein	NA	NA	NA	NA
WP_064565849.1\|2343265_2343886_-	DotU family type IV/VI secretion system protein	NA	NA	NA	NA
WP_064565851.1\|2343882_2345244_-\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA
WP_064565853.1\|2345245_2345875_-	type VI secretion system lipoprotein TssJ	NA	NA	NA	NA
WP_064565855.1\|2345874_2346927_-	type VI secretion system protein TssA	NA	NA	NA	NA
WP_043953333.1\|2346933_2347233_-	PAAR domain-containing protein	NA	NA	NA	NA
WP_064565857.1\|2347232_2347679_-	hypothetical protein	NA	NA	NA	NA
WP_064565859.1\|2347689_2349828_-	type VI secretion system tip protein VgrG	NA	NA	NA	NA
WP_064565861.1\|2349840_2350782_-\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA

DBSCAN-SWA_7

3055245 : 3089846

Pectobacterium_phage(66.67%)

integrase,holin,tail,plate,terminase,head,lysis

attL 3049493:3049507|attR 3085766:3085780

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
3049493:3049507	attL	NA	NA	NA	NA
WP_064566881.1\|3055245_3056331_+\|integrase	site-specific integrase	S5MDN5	Escherichia_phage	2.2e-112	54.6
WP_064566883.1\|3056803_3058360_-	hypothetical protein	NA	NA	NA	NA
WP_064566886.1\|3058714_3059056_-	DUF1493 family protein	NA	NA	NA	NA
WP_064566888.1\|3059040_3059508_-	hypothetical protein	A0A218M4J4	Erwinia_phage	4.0e-10	33.1
WP_064566890.1\|3059651_3060326_-	hypothetical protein	NA	NA	NA	NA
WP_064566892.1\|3060329_3062390_-\|tail	phage tail protein	H9C1B7	Pectobacterium_phage	2.2e-169	50.1
WP_064566894.1\|3062462_3064925_-	discoidin domain-containing protein	H9C1B5	Pectobacterium_phage	2.1e-206	51.9
WP_064566896.1\|3064926_3065829_-	DUF2612 domain-containing protein	H9C1B4	Pectobacterium_phage	1.3e-105	66.3
WP_064566897.1\|3065815_3067030_-\|plate	phage baseplate protein	H9C1B3	Pectobacterium_phage	1.2e-162	72.6
WP_064566899.1\|3067029_3067380_-	hypothetical protein	H9C1B2	Pectobacterium_phage	5.1e-50	80.2
WP_082934104.1\|3067441_3068044_-	hypothetical protein	H9C1B1	Pectobacterium_phage	3.6e-80	66.1
WP_064566903.1\|3068040_3068931_-	hypothetical protein	H9C1B0	Pectobacterium_phage	4.3e-146	79.7
WP_007374712.1\|3068923_3069214_-	hypothetical protein	H9C1A9	Pectobacterium_phage	9.7e-39	78.1
WP_064566905.1\|3069210_3069855_-	hypothetical protein	H9C1A8	Pectobacterium_phage	6.6e-72	73.4
WP_064566908.1\|3069857_3071555_-	glycoside hydrolase family 104 protein	H9C1A7	Pectobacterium_phage	4.3e-179	60.4
WP_064566910.1\|3071817_3072204_-	hypothetical protein	H9C1A4	Pectobacterium_phage	3.4e-39	65.0
WP_007374705.1\|3072203_3072608_-	hypothetical protein	H9C1A3	Pectobacterium_phage	5.8e-66	95.5
WP_064566911.1\|3072614_3073769_-	DUF3383 family protein	H9C1A2	Pectobacterium_phage	1.5e-194	87.2
WP_064566913.1\|3073777_3074302_-	hypothetical protein	H9C1A1	Pectobacterium_phage	9.8e-82	83.3
WP_064566915.1\|3074301_3074721_-	hypothetical protein	H9C1A0	Pectobacterium_phage	1.5e-69	85.0
WP_064566917.1\|3074723_3075191_-	hypothetical protein	H9C199	Pectobacterium_phage	2.8e-64	80.6
WP_082934105.1\|3075187_3075610_-	DUF4054 domain-containing protein	H9C198	Pectobacterium_phage	5.1e-65	88.6
WP_064566921.1\|3075639_3075993_-	hypothetical protein	H9C197	Pectobacterium_phage	3.2e-20	45.1
WP_007374698.1\|3075995_3076946_-	DUF2184 domain-containing protein	H9C196	Pectobacterium_phage	6.2e-151	84.4
WP_064566922.1\|3076960_3077479_-	hypothetical protein	H9C195	Pectobacterium_phage	1.6e-52	66.7
WP_064566924.1\|3077478_3078678_-	DUF2213 domain-containing protein	H9C194	Pectobacterium_phage	3.6e-148	82.5
WP_064566926.1\|3078696_3079446_-\|head	phage head morphogenesis protein	H9C193	Pectobacterium_phage	1.3e-98	73.9
WP_064566927.1\|3079495_3080887_-	DUF1073 domain-containing protein	H9C192	Pectobacterium_phage	1.7e-213	78.2
WP_064566929.1\|3080889_3082530_-\|terminase	phage terminase large subunit	H9C191	Pectobacterium_phage	3.2e-304	89.7
WP_064566931.1\|3082762_3083794_-\|terminase	terminase small subunit	Q5QF76	Pseudomonas_virus	4.0e-34	41.6
WP_064566933.1\|3083913_3084351_+	hypothetical protein	NA	NA	NA	NA
WP_139227883.1\|3084485_3084809_+	hypothetical protein	NA	NA	NA	NA
WP_167351168.1\|3084835_3085300_-\|lysis	lysis protein	A0A192Y689	Salmonella_phage	7.2e-52	73.6
WP_139227882.1\|3085308_3085752_-	glycoside hydrolase family protein	A0A0M4R365	Salmonella_phage	3.0e-55	76.5
WP_007371424.1\|3085732_3086056_-\|holin	phage holin, lambda family	Q5G8R5	Enterobacteria_phage	1.5e-40	78.3
3085766:3085780	attR	NA	NA	NA	NA
WP_064566937.1\|3086401_3087463_-	site-specific DNA-methyltransferase	Q8SBE2	Shigella_phage	1.2e-171	81.2
WP_071892703.1\|3087612_3087804_-	TrmB family transcriptional regulator	Q8SBE3	Shigella_phage	6.2e-18	69.8
WP_064566940.1\|3087973_3088660_-	antiterminator	I6PDF8	Cronobacter_phage	5.1e-62	54.0
WP_064566942.1\|3088763_3089057_-	DUF1364 domain-containing protein	E5AGG0	Erwinia_phage	1.8e-37	74.0
WP_139227900.1\|3089049_3089250_-	hypothetical protein	K7PJT9	Enterobacteria_phage	2.5e-14	70.2
WP_139227881.1\|3089249_3089846_-	DUF1367 family protein	S4TTI0	Salmonella_phage	5.3e-92	83.4

DBSCAN-SWA_8

3100270 : 3108650

Salmonella_phage(28.57%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_064566968.1\|3100270_3100558_+	hypothetical protein	H6WRX2	Salmonella_phage	9.9e-28	57.9
WP_064566970.1\|3100690_3103624_+	exodeoxyribonuclease	K7PJT5	Enterobacteria_phage	2.9e-263	54.7
WP_064566972.1\|3103633_3104713_+	recombinase RecT	H6WRX0	Salmonella_phage	9.7e-100	52.8
WP_064566974.1\|3104753_3104933_+	hypothetical protein	G8C7S7	Escherichia_phage	5.8e-10	65.3
WP_064566976.1\|3104919_3105183_+	DUF4060 family protein	K7PHF4	Enterobacteria_phage	1.7e-21	70.7
WP_007374662.1\|3105281_3105536_+	pyocin activator PrtN family protein	A0A1W6JP35	Morganella_phage	1.3e-18	54.8
WP_064566978.1\|3106068_3107004_+	hypothetical protein	NA	NA	NA	NA
WP_064566979.1\|3107003_3107447_+	DUF1311 domain-containing protein	NA	NA	NA	NA
WP_064566981.1\|3107669_3107957_+	hypothetical protein	NA	NA	NA	NA
WP_064566984.1\|3108191_3108650_-\|transposase	IS200/IS605 family transposase	I4AZI8	Saccharomonospora_phage	1.0e-13	32.3

DBSCAN-SWA_9

3945323 : 3953455

uncultured_Caudovirales_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_064568049.1\|3945323_3945578_+	DUF1471 domain-containing protein	A0A1B2IB27	Erwinia_phage	2.7e-05	50.9
WP_043954418.1\|3945684_3946041_+	helix-turn-helix domain-containing protein	D0R0F8	Streptococcus_phage	2.4e-07	36.9
WP_156525217.1\|3946336_3946507_+	hypothetical protein	NA	NA	NA	NA
WP_064568051.1\|3946908_3948036_+	porin OmpC	Q1MVN1	Enterobacteria_phage	1.9e-98	51.1
WP_064568053.1\|3948245_3948500_+	DUF1471 domain-containing protein	A0A1B2ICL8	Erwinia_phage	2.1e-05	47.3
WP_064568054.1\|3948585_3949011_-	glutaredoxin-dependent arsenate reductase	A0A2H4J8T1	uncultured_Caudovirales_phage	1.5e-51	71.4
WP_064568055.1\|3949023_3950313_-	arsenic transporter	A0A2H4J144	uncultured_Caudovirales_phage	4.2e-166	71.8
WP_064568057.1\|3950356_3950677_-	metalloregulator ArsR/SmtB family transcription factor	A0A2H4J145	uncultured_Caudovirales_phage	5.9e-21	54.9
WP_064569061.1\|3950855_3952262_-	heavy metal sensor histidine kinase	NA	NA	NA	NA
WP_007373715.1\|3952273_3952966_-	heavy metal response regulator transcription factor	W8CYM9	Bacillus_phage	5.5e-32	34.2
WP_043954427.1\|3953122_3953455_-	helix-turn-helix domain-containing protein	D0R0F8	Streptococcus_phage	4.7e-05	29.5

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP014007

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection