CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP015867	Streptomyces parvulus strain 2297 plasmid pSPA1, complete sequence	0 crisprs	NA	0	0	0	0
NZ_CP015866	Streptomyces parvulus strain 2297 chromosome, complete genome	5 crisprs	csa3,casR,DEDDh,WYL,cas4,Cas9_archaeal,cas3,DinG	0	1	0	0

Cas Category Instructions

Results visualization

1. NZ_CP015866

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP015866_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP015866_1

2284500-2284600

Orphan

Consensus_repeat	Method
CCCCAAAGCGGCGCGGGGAACTGCGCGACCA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP015866_1

>merge|NZ_CP015866|1|2284500-2284600|CRISPRCasFinder
CCCCAAAGCGGCGCGGGGAACTGCGCGACCAACCCCCACGGCCACCCCTCACCCCCGGCCCACCACCCGCCCCCAAAGGGGCGCGGGGAACTGCGCGACCA

>NZ_CP015866|1|1|2284500-2284600|CRISPRCasFinder
CCCCAAAGCGGCGCGGGGAACTGCGCGACCA	ACCCCCACGGCCACCCCTCACCCCCGGCCCACCACCCGC
CCCCAAAGGGGCGCGGGGAACTGCGCGACCA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP015866.1\|WP_064727793.1\|2296284_2297121_-\|isoprenyl-transferase	unknown	unknown	gnl\|CDD\|237826
NZ_CP015866.1\|WP_064731740.1\|2280141_2281758_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|293739
NZ_CP015866.1\|WP_064727783.1\|2275218_2276421_-\|acyltransferase	unknown	unknown	gnl\|CDD\|224748
NZ_CP015866.1\|WP_064727779.1\|2271553_2272321_+\|glucose-1-dehydrogenase	unknown	unknown	gnl\|CDD\|235975
NZ_CP015866.1\|WP_064731739.1\|2283032_2284478_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|129794
NZ_CP015866.1\|WP_064727778.1\|2270870_2271455_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|366102
NZ_CP015866.1\|WP_064727780.1\|2272448_2273603_+\|DUF839-domain-containing-protein	unknown	unknown	gnl\|CDD\|253386
NZ_CP015866.1\|WP_064727789.1\|2293050_2294031_+\|zinc-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|238501
NZ_CP015866.1\|WP_064731742.1\|2297184_2297934_-\|DNA-repair-protein-RecO	unknown	unknown	gnl\|CDD\|234622
NZ_CP015866.1\|WP_064727790.1\|2294057_2294828_+\|metal-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224046
NZ_CP015866.1\|WP_064727781.1\|2273625_2274558_-\|SDR-family-NAD(P)-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|235737
NZ_CP015866.1\|WP_064727782.1\|2274740_2275190_+\|excalibur-calcium-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|214891
NZ_CP015866.1\|WP_064727785.1\|2281758_2282925_-\|tRNA-dihydrouridine-synthase-DusB	unknown	unknown	gnl\|CDD\|129820
NZ_CP015866.1\|WP_064727791.1\|2294827_2295730_+\|metal-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224033
NZ_CP015866.1\|WP_064727792.1\|2295790_2296210_+\|transcriptional-repressor	unknown	unknown	gnl\|CDD\|133478
NZ_CP015866.1\|WP_079163500.1\|2288991_2290002_-\|histone-H1-like-repetitive-region-containing-protein	unknown	unknown	gnl\|CDD\|237855
NZ_CP015866.1\|WP_064727786.1\|2284647_2288982_-\|cation-translocating-P-type-ATPase	unknown	unknown	gnl\|CDD\|319840
NZ_CP015866.1\|WP_064727788.1\|2291441_2292824_-\|glycine--tRNA-ligase	unknown	unknown	gnl\|CDD\|235240
NZ_CP015866.1\|WP_064727787.1\|2290210_2291290_+\|chitinase	unknown	unknown	gnl\|CDD\|119350
NZ_CP015866.1\|WP_064727784.1\|2276661_2279391_-\|pyruvate,-phosphate-dikinase	unknown	unknown	gnl\|CDD\|236446

Protein	Function_ID	Function_description	E-value
NZ_CP015866.1\|WP_064727793.1\|2296284_2297121_-\|isoprenyl-transferase	gnl\|CDD\|237826	PRK14829, PRK14829, undecaprenyl pyrophosphate synthase; Provisional.	2.34801e-131
NZ_CP015866.1\|WP_064731740.1\|2280141_2281758_+\|hypothetical-protein	gnl\|CDD\|293739	cd16015, LTA_synthase, Lipoteichoic acid synthase like. Lipoteichoic acid (LTA) is an important cell wall polymer found in Gram-positive bacteria. It may contain long chains of ribitol or glycerol phosphate. LTA synthase catalyzes the reaction to extend the polymer by the repeated addition of glycerolphosphate (GroP) subunits to the end of the growing chain.	7.38086e-12
NZ_CP015866.1\|WP_064727783.1\|2275218_2276421_-\|acyltransferase	gnl\|CDD\|224748	COG1835, COG1835, Predicted acyltransferases [Lipid metabolism].	1.24138e-28
NZ_CP015866.1\|WP_064727779.1\|2271553_2272321_+\|glucose-1-dehydrogenase	gnl\|CDD\|235975	PRK07231, FabG-like, SDR family oxidoreductase.	5.60881e-72
NZ_CP015866.1\|WP_064731739.1\|2283032_2284478_+\|MFS-transporter	gnl\|CDD\|129794	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. [Cellular processes, Toxin production and resistance, Transport and binding proteins, Other].	5.98161e-77
NZ_CP015866.1\|WP_064727778.1\|2270870_2271455_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|366102	pfam00440, TetR_N, Bacterial regulatory proteins, tetR family.	1.7713e-11
NZ_CP015866.1\|WP_064727780.1\|2272448_2273603_+\|DUF839-domain-containing-protein	gnl\|CDD\|253386	pfam05787, DUF839, Bacterial protein of unknown function (DUF839). This family consists of several bacterial proteins of unknown function that contain a predicted beta-propeller repeats.	1.78112e-28
NZ_CP015866.1\|WP_064727789.1\|2293050_2294031_+\|zinc-ABC-transporter-substrate-binding-protein	gnl\|CDD\|238501	cd01019, ZnuA, Zinc binding protein ZnuA. These proteins have been shown to function as initial receptors in the ABC uptake of Zn2+. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a single helix and bind their specific ligands in the cleft between these domains. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).	7.64656e-97
NZ_CP015866.1\|WP_064731742.1\|2297184_2297934_-\|DNA-repair-protein-RecO	gnl\|CDD\|234622	PRK00085, recO, DNA repair protein RecO; Reviewed.	1.49065e-85
NZ_CP015866.1\|WP_064727790.1\|2294057_2294828_+\|metal-ABC-transporter-ATP-binding-protein	gnl\|CDD\|224046	COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism].	9.51148e-74
NZ_CP015866.1\|WP_064727781.1\|2273625_2274558_-\|SDR-family-NAD(P)-dependent-oxidoreductase	gnl\|CDD\|235737	PRK06197, PRK06197, short chain dehydrogenase; Provisional.	2.44255e-112
NZ_CP015866.1\|WP_064727782.1\|2274740_2275190_+\|excalibur-calcium-binding-domain-containing-protein	gnl\|CDD\|214891	smart00894, Excalibur, Excalibur calcium-binding domain. Extracellular Ca2+-dependent nuclease YokF from Bacillus subtilis and several other surface-exposed proteins from diverse bacteria are encoded in the genomes in two paralogous forms that differ by a ~45 amino acid fragment, which comprises a novel conserved domain. Sequence analysis of this domain revealed a conserved DxDxDGxxCE motif, which is strikingly similar to the Ca2+-binding loop of the calmodulin-like EF-hand domains, suggesting an evolutionary relationship between them. Functions of many of the other proteins in which the novel domain, named Excalibur (extracellular calcium-binding region), is found, as well as a structural model of its conserved motif are consistent with the notion that the Excalibur domain binds calcium. This domain is but one more example of the diversity of structural contexts surrounding the EF-hand-like calcium-binding loop in bacteria. This loop is thus more widespread than hitherto recognised and the evolution of EF-hand-like domains is probably more complex than previously appreciated.	1.10567e-10
NZ_CP015866.1\|WP_064727785.1\|2281758_2282925_-\|tRNA-dihydrouridine-synthase-DusB	gnl\|CDD\|129820	TIGR00737, Probable_tRNA-dihydrouridine_synthase, putative TIM-barrel protein, nifR3 family. This model represents one branch of COG0042 (Predicted TIM-barrel enzymes, possibly dehydrogenases, nifR3 family). This branch includes NifR3 itself, from Rhodobacter capsulatus. It excludes a broadly distributed but more sparsely populated subfamily that contains sll0926 from Synechocystis PCC6803, HI0634 from Haemophilus influenzae, and BB0225 from Borrelia burgdorferi. It also excludes a shorter and more distant archaeal subfamily.The function of nifR3, a member of this family, is unknown, but it is found in an operon with nitrogen-sensing two component regulators in Rhodobacter capsulatus.Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. [Unknown function, General].	9.97854e-126
NZ_CP015866.1\|WP_064727791.1\|2294827_2295730_+\|metal-ABC-transporter-permease	gnl\|CDD\|224033	COG1108, ZnuB, ABC-type Mn2+/Zn2+ transport systems, permease components [Inorganic ion transport and metabolism].	1.15554e-60
NZ_CP015866.1\|WP_064727792.1\|2295790_2296210_+\|transcriptional-repressor	gnl\|CDD\|133478	cd07153, Fur_like, Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions. For example, PerR, a metal-dependent sensor of hydrogen peroxide. PerR regulates DNA-binding activity through metal-based protein oxidation, and co-ordinates Mn2+ or Fe2+ at its regulatory site. Fur family proteins contain an N-terminal winged-helix DNA-binding domain followed by a dimerization domain; this CD spans both those domains.	1.7581e-41
NZ_CP015866.1\|WP_079163500.1\|2288991_2290002_-\|histone-H1-like-repetitive-region-containing-protein	gnl\|CDD\|237855	PRK14900, valS, valyl-tRNA synthetase; Provisional.	2.15859e-13
NZ_CP015866.1\|WP_064727786.1\|2284647_2288982_-\|cation-translocating-P-type-ATPase	gnl\|CDD\|319840	cd07539, P-type_ATPase, uncharacterized subfamily of P-type ATPase transporters. This subfamily contains P-type ATPase transporters of unknown function. The P-type ATPases, are a large family of integral membrane transporters that are of critical importance in all kingdoms of life. They generate and maintain (electro-) chemical gradients across cellular membranes, by translocating cations, heavy metals and lipids. They are distinguished from other main classes of transport ATPases (F- , V- , and ABC- type) by the formation of a phosphorylated (P-) intermediate state in the catalytic cycle. A general characteristic of P-type ATPases is a bundle of transmembrane helices which make up the transport path, and three domains on the cytoplasmic side of the membrane. Members include pumps that transport various light metal ions, such as H(+), Na(+), K(+), Ca(2+), and Mg(2+), pumps that transport indispensable trace elements, such as Zn(2+) and Cu(2+), pumps that remove toxic heavy metal ions, such as Cd2+, and pumps such as aminophospholipid translocases which transport phosphatidylserine and phosphatidylethanolamine.	0
NZ_CP015866.1\|WP_064727788.1\|2291441_2292824_-\|glycine--tRNA-ligase	gnl\|CDD\|235240	PRK04173, PRK04173, glycyl-tRNA synthetase; Provisional.	0
NZ_CP015866.1\|WP_064727787.1\|2290210_2291290_+\|chitinase	gnl\|CDD\|119350	cd02871, GH18_chitinase_D-like, GH18 domain of Chitinase D (ChiD). ChiD, a chitinase found in Bacillus circulans, hydrolyzes the 1,4-beta-linkages of N-acetylglucosamine in chitin and chitodextrins. The domain architecture of ChiD includes a catalytic glycosyl hydrolase family 18 (GH18) domain, a chitin-binding domain, and a fibronectin type III domain. The chitin-binding and fibronectin type III domains are located either N-terminal or C-terminal to the catalytic domain. This family includes exochitinase Chi36 from Bacillus cereus.	5.54843e-113
NZ_CP015866.1\|WP_064727784.1\|2276661_2279391_-\|pyruvate,-phosphate-dikinase	gnl\|CDD\|236446	PRK09279, PRK09279, pyruvate phosphate dikinase; Provisional.	0

>NZ_CP015866.1|WP_064731739.1|2283032_2284478_+|MFS-transporter
MPELTHRRRMLVLAICCMSLLIVSIDNTILNVALPAVQRDLHASTSGLQWAVDAYTLVLAALLMLAGSTADRIGRKRVFMTGLVVFTLGSLLCSLAPDLSSLVVFRMVQAVGGSMLNPVAMSIITNTFTDPRERARAIGVWGAVVGISMAAGPLVGGVLVESVGWRSIFWVNLPVGLTALLLTLRFVPESRAPRARRPDPLGQLLVIVLFGSLTYAIIEAPNAGFTAVLPFAVLACVALAGLLLHEPRRAEPLIELRFFRSAPFSGATVIAVSAFAALGGFLFLSTLYLQNVRGLSALEAGLWMLPMAVPTFLCAPLSGRLVGSRGPRLPLLVAGGALTASGVLFAAFEAETSDVTLFLGYVLFGVGFGFVNAPITNTAVSGMPRAQAGVAAAVASTSRQLGQTLGVAVVGAVLATGVGASSYRDTFVSAARPGWWILAACGLAVLVLGAITSGPWARRTAERTAERLESTEERETARAGA
>NZ_CP015866.1|WP_064727785.1|2281758_2282925_-|tRNA-dihydrouridine-synthase-DusB
MSTLTTPAPAATAPPLRVGPHTVAPPVVLAPMAGITNAPFRTLCREFSGGKGLFVSEMITTRALVERNEKTMQLIHFDATETPRSIQLYGVDPVTVGKAVRMIAEEGLADHIDLNFGCPVPKVTRKGGGSALPYKRNLLRAIVREAVTGAGDLPVTMKMRKGIDDDHLTFLDAGRIAVEEGVSAIALHGRTTAQHYGGTADWDAIARLKEHVPEIPVLGNGDIWCAEDALRMVRETGCDGVVVGRGCLGRPWLFADLVAAFEGRTGSFARPALREVADVMVRHATLLGEWIGDEARGVIDFRKHVAWYLKGFAVGSEMRKRLAITSSLEALRAGLDELDLDQPWPAGADGPRGRTSGNNRVVLPDGWLKDPYDCAGVGEDAELDTSGG
>NZ_CP015866.1|WP_064731740.1|2280141_2281758_+|hypothetical-protein
MRRTTTVLAAVLVLGALLLPNTLVALEPNRFARIPAEAVIAAVLLLCLPRAARRVAAALFGLGLGVLTVLNLLDMGFTEYLGRGFNVVLDWGLLDDAQAYVADSMGGAAAAWAAVGAVVLVVLVLVVMALAAVRLGELLAAHRERAARGALTAATVWMTCVALGVQTFGVPVATRSASGALEAQAHRVVDTLRDEAAFAKEAKADRFGATPGAQLVPDLRGKDMVFTFIESYGRSAIEDPVTAPGVGRTLDAGTKALAAKGFRAKSGWLTSATYGGSSWLGHSTFLSGLWVDNQQRYRTVTAGDHLTLTKAFRETGEWDTVGVMPGVQKAWPEAEWHGLDKVYDAFDLGYRGPKFSWSTMPDQYALEAFQRLEHGRKRDRPLMAEVILTSSHQPWAPLPRMVGWDEVGDGSVYDGIEASGVEASDIIADSTRSKEEYGKSVAYSVTSLTQWLERYGTDDTVLVFLGDHQPLARVSGDGASRDVPVSVVAKDPKVLDAIDDWNWTEGLKPAEDAPVWRMSSFRDRFLTAYGSTPHPTGE
>NZ_CP015866.1|WP_064727784.1|2276661_2279391_-|pyruvate,-phosphate-dikinase
MSENKAPQVTNAPKFVYDFTEGNKDLKDLLGGKGANLAEMTNLGLPVPPGFTITTEACKTYLDSGDEPAALRDEVSAHLDALETRMGKKLGQTDDPLLVSVRSGAKFSMPGMMDTVLNIGLSDKSVQGLAKQAGDDRFAWDSYRRLIQMFGKTVLGVDGDLFEEALESAKAAKKVAVDTELEAADLKKLVTKFKKIVKTEAGRDFPQDPREQMDLAIKAVFDSWNGERAKLYRRQERIPHDLGTAVNVCSMVFGNLGPDSGTGVAFTRDPASGHQGVYGDYLQNAQGEDVVAGIRNTVALAELESIDKKSYDELMRIMETLENHYLDLCDIEFTIERGRLWMLQTRVGKRTAGAAFRIATQLVDQGLIDEAEALQRVNGAQLAQLMFPRFDDEAKVEKVGRGIAASPGAAVGKAVFDSYTAVKWSRSGEKVILVRRETNPDDLDGMIAAEGILTSRGGKTSHAAVVARGMGKTCVCGAEELEVDTKRRRMTVPGGHVVEEGDVISIDGSSGKVYLGEVPVVPSPVVEYFEGRMHAGAEDADELVEAVHRIMAFADRKRRLRVRANADNAEDALRARRFGAQGIGLCRTEHMFLGDRRELVERLILADTEAVREESLKELLPLQKQDFVQLFESMDGLPVTVRLLDPPLHEFLPDITELSVRVALAESRQEPHENELRLLQAVHRLHEQNPMLGLRGVRLGLVIPGLFTMQVRAIAEAAAERKAAKGDPRAEIMIPLVGTVQELEIVRDEADQVIAEVEAATGTKLKLSIGTMIELPRAALTAGQIAEAAQFFSFGTNDLTQTVWGFSRDDVEASFFTAYLEKGIFGVSPFETIDKDGVGSLVAAAAKAGRATRPDLKLGVCGEHGGDPESVHFFHEVGLDYVSCSPFRIPVARLEAGRAASRSKGSDHR
>NZ_CP015866.1|WP_064727783.1|2275218_2276421_-|acyltransferase
MTSTDHREPAGTTATRGGETASGVPAPRAAAGARVPEAGPPVRRDRLAALDGLRFLAALAVVFFHFVGQAPSTMQTIWDRPVQDVFPVAHGYFAFGRLGVELFFLISGFVICMSAWGRTPRDFFISRVTRLYPMYWAAVAITACVIFFADNPFGHPSPRVLFANLTMLQTPLGVEHLDSVYWTLWPEMCFYLTFAVVVWKGLTYQRVVIYCGLWTVAAVLAPSADIRLLTLLVNPPSAPYFIAGMAFYLMYRYRPTPLLWGIVAMSWLVALHYLLTPDGGRLNWDSWSPWRGWLVLVITVFFLLIAAVALGWTRWIRWRGLTVAGTLTFPLYLLHDAIGVNLLHRFGDRADPWVVVGATVVALVALSYVVQRFVERPVARAARRWLSSAAFSLKTPEPRR
>NZ_CP015866.1|WP_064727782.1|2274740_2275190_+|excalibur-calcium-binding-domain-containing-protein
MKLLRKPAAVAVAALALAALPSAALAHDGSHPFKNCTEAYEAGYSNIEKGDPHYGAHLDRDDDGVGCDKPPADFVPAEDSGEEAADDAADTGSGKDTGGDKAAGQQGTDLAETGGDDSTPYIAAGGAIVVLAGGGLLLAVGKRRGGGAA
>NZ_CP015866.1|WP_064727781.1|2273625_2274558_-|SDR-family-NAD(P)-dependent-oxidoreductase
MTGWNTGDIPALDGRVAVVTGANGGLGYVIARELARKGAHVVLACRSEARGSAAVERLVEEVPGAAVEPGRLDLGDLAGIREFAYGLPYERLDLLVNNAGVMALPHGTTADGFETQFGVNHLGHFALTGLLLPTLLATPGARVVTVSSFLHALGKVDPRDLNSVRRYGRWTAYGRSKSANLLFTHELARRLAARDDAWDVRAVAAHPGYARTGLMTAGPRAEGRRLATGLMGLASRVVAQPAEAGALPVLYAATAPGVPSDSFTGPSFAMWRGAPAPSRRAPWTLDDAMGERLWAASERLTGVTYEALRT
>NZ_CP015866.1|WP_064727780.1|2272448_2273603_+|DUF839-domain-containing-protein
MDRRTLLRTAVVGGSAVLGGTLWRGAAYAAPAQPGSGPYGALGSPDANGLRLPAGFTSRVIARSGQKVAGTSYTWHSAPDGGACYADGSGWIYVSNSEVNPSGGASAVRFSSAGAVTSAYRVLSGTRQNCAGGRTPWNTWLSCEEVDRGYVYETDPWGVKAAVRRDAMGRFKHEAAAADPVRRVVYLTEDVTDGCFYRFRPTTWGDLSAGTLEVLVAGSATSGPVTWARVPDPSGATATRGQVSGAKRFNGGEGCYYADDTCWFTTKGDNRVWQYNASAGTIELAYDDSLVTSGTAPLTGVDNVTGSSSGDLFVAEDGGNMEICVITPNDVIAPFLRIDGQSGSEITGPAFSPDGTRLYFSSQRGTSGSSSGGITYEVRGPFRA
>NZ_CP015866.1|WP_064727779.1|2271553_2272321_+|glucose-1-dehydrogenase
MTTQRFTGRTALVTGAGSGIGRAVALALAAEGANVVVAGRRREPLAETAALIEEAGGKALALTADISRADDVRAAVDEAVAHFGSLDVAVNNAGVFRGGTPVADLAEADWHEQLGTNVTGVFLALAAEVRQMRTQPHGGAIVNLASTFGLHKRTPGATAYAATKAAVSVLTRGAAIDHIADGVRINAVSPGATATSMSLLPGESEAERAERMRGETPLGRVSSVAEVAAAVLYLASDDASSVVGTDLVVDGGQTA
>NZ_CP015866.1|WP_064727778.1|2270870_2271455_+|helix-turn-helix-transcriptional-regulator
MARTKEFDPDAALWAALELFWERGYEGTSMSDLVERLGVGRASIYATFGNKRELYLKALARYEEGLLPDLLADLSAPGAALPGVRALVRRYAAETTAGELRLRGCFVTNTAAELAPHDPVAARRVERNWDQLETVLHTALARAGAQGELPAGRDPRALARMLMVLLQGMRVVGKASADPARIRDAAEQALALLD
>NZ_CP015866.1|WP_064727786.1|2284647_2288982_-|cation-translocating-P-type-ATPase
MVGALLTRSQDAVTGFVLAGPRLLARGTAPAVGAAAGAVAGTARAGVRGADFAARAARVARAALPGGAREWRAGSRAHLALSAAGSDEARLAGGTEKVARRVAAAVAEHPDVLVAYWDTGLARLVVTATEEELTDSVVDHATDVAHRHGLAVGDQVDELAHPGDPASVRVAATALGADLLGIAAAVTASRLRLPPSPRLITAVATLLRENPAFRAWLRERMGDHRMDVTLAAANAAVHGAGQSPTSLALDGALRACQLTEAVARTAAFEVVHDQLCAPGRGSLPAAPALRPDPRTSPAQDYAAHASAGSVAGAAATLLVKHDVAEAAEAILAGSPKAARYGPAAFHAVLSAALSRTGVLVRDPGRLRQLEMARTVVLHPSALRVPDDGADPWTEDVLDAARRAGLRVVMVQDPALADFTGLADQVVDARRPLADVVAGLRSEGGVVTVVRPRPEDDASVLAGLLAGDVAVALADADSPVAWGADVIAPQGLADVWRLLRAVPAARAVGRRSQTLARSGAALSGLLVAVGEARGRRRGRPGFIALSGLRHAPVDASAAAALLSGTRAAVGVAMARAPHPRARVAWHALDLDAVRDRLDREGEPAATVAEQAAARLRAVADRAGRVPVLAPAFWSWELARAVRGELDDPLTPVLAVGSAASAILGSVVDALLVVGALDLNALVGGFQRLRAERALSGLLAEQTQKARIFEESGRAGLPRIVDASRLHPGHVIELKTDDVVPADARLLWEDGLEVDESALTGESLPVDKSVDPAPKAPVAERYCMVFEGTTVVAGRARAVVVDTGDHTESARAVALAARTPAAAGVQARLQELTRKALPLTLAGGAAVTGLSLLRGAPVRQAVAGGVSVAVAAVPEGLPLVATVAQLAAARRLSRRGVLVRTPRTLEALGRMDTVCFDKTGTLTENRLRLSRVAGADGTVRRAGDPAAADAVRTAARAVPRLNGDGARPTHATDEAVLDAAGADPGWTQLEGLPFETSRGYAAAVGRDAAGGPATLVVKGAPETVLPACADLPSHAQDVAQALARDGLRIIAVASRPLRRGEKPAEVLEQQPAKLEFTGLLALADVPRETSPALVRGLREAGVRPVVLTGDHPQTAHAIAVDLGWPEDAVVVTGDELAAADRTARSRMLRDADVVARVAPEQKLQVVESLRDAGRVVGMVGDGANDAAAIRAADIGVGISARGSAAARNAADLVVTGDDLLVLVEAVREGRALWHSVADAIAILIGGNAGEVGFGILGTVLSGSSPLSTRQMLLVNLFTDLFPAMAVAVTRTGDPEQEAADAGAPLGAAVLGEPLLRQIRHRALTTALGATAAWLFGRFTPGTDRRSTTMALCAVVGTQLAQTLADRRDSRLVQVTSLGSAAALVVLVQTPGVSRLFGCTPLGPVAWTGVTAAIVLALAGQRALPEVEEAVLKYWPMLAERLPKPLR
>NZ_CP015866.1|WP_079163500.1|2288991_2290002_-|histone-H1-like-repetitive-region-containing-protein
MAEQKSAQTLPRPLHAAASAARKVPGATTVGRAAEGALDRIGAVSPRGRRVLVYTGAGVLGVAGLVEWPVAVTGAAVAWLTQSRRRRNGNGNGNGNGNGAASRRTGGARSGGAAGTGSARSGTAGSAASKPAASKSASSSTGAAKKTAAQKTAAQKTAARTSTAKKATANKATAKKATAKSAAARGGAAKKATAKKTTANRATAKKTTAKKTTAKRTTANKAAANKATAKKAAASRTAAKSAPARKTAAQKTAAQKTAAQKSAAKKSTAKTAAKKSTANKATARKAPAKKAPAKKTASPARSRGRSGKKAASSRPSGSASAGSRRTASASRTRTTA
>NZ_CP015866.1|WP_064727787.1|2290210_2291290_+|chitinase
MVRRTIRLLAAALAATVLTPLGVATASAAPSARPAPTAAAADTCAVKSKPAGKVLQGYWENWDGAANGVHPPFGWTPITDARIGAHGYNVLNAAFPVIRSDGTALWEDGMDTGVKVATPAEMCAAKASGQTILLSIGGATAGIDLNSTAVADRFVDTIVPILKKYNFDGIDIDIETGLTGSGSIGQLSTSQANLIRIIDGVLARMPANFGLTMAPETAYVTGGSVTYGSIWGAYLPVVKKYADNGRLWWLNMQYYNGSMYGCSGDSYSAGTVQGFTAQTDCLNKGLVIQGTTIRVPYDKQVPGLPAQPGAGGGHMAPSLVAQAWNQYNGSLKGLMTWSLNWDGSKNWTFGDNVKSLQGR
>NZ_CP015866.1|WP_064727788.1|2291441_2292824_-|glycine--tRNA-ligase
MAADKIDTIVSLSKRRGFVFPCSEIYGGQRAAWDYGPLGVELKENLKRQWWRYMVTSREDVVGLDSSVILAPEVWVASGHVATFTDPLTECTSCHKRFRADHLEEAYEEKKGHAPENGLADLNCPNCGNKGTFTEPKQFSGLLSTHLGPTQDSGSVAYLRPETAQGIFTNFAQVQTTSRRKPPFGIAQMGKSFRNEITPGNFIFRTREFEQMEMEFFVKPGEDEKWQEYWMEQRWNWYTGLGLREENMRWYEHPAEKLSHYSKRTADIEYRFSFGGSEWGELEGVANRTDYDLSSHSKASGQDLSYFDQEAGERWTPYVIEPAAGVGRAMLAFLLDAYVEDEAPNAKGKLEKRTVLRLDPRLSPVKVAVLPLSRNPELSPKAKGLAQALRQHWNIEFDDAGAIGRRYRRQDEIGTPFCVTVDFDTLDDNAVTVRERDTMKQERVSLDQIEGYLASRLVGC
>NZ_CP015866.1|WP_064727789.1|2293050_2294031_+|zinc-ABC-transporter-substrate-binding-protein
MNVRRRHISGIAVAAAAALGLGTLSACSSDSSAAGNTDKLDVVASFYPMQYLAEEIGGDHVNVTTLTEPGQEPHDLELSARQTAQMGEADAVLYLKSLQPTVDEAVAQSDVKTKIDAAGLTELEDHGSVEHDHGAEGHSGEEHAEEGHSEEGDALDPHVWLDPVKYAEIAEGVAESFEKADPDHADAYRANADALAKKLGDLDTAFKDGLADTGSKVFFTNHAAFGYLAERYGLTQEAINGLDPESEPSPARIKELQEEARADGVTTVFYETLVSDKTARTLAKDAGLKTDVLDPLEGITDKSKGDDYVGVMEANLKALQAALGAK
>NZ_CP015866.1|WP_064727790.1|2294057_2294828_+|metal-ABC-transporter-ATP-binding-protein
MSDEPVISLRGVRAELGSRPVLRGIDLTVGRGEVVALLGANGSGKSTAVRTLIGQVPVTAGAVELFGTPRRRFRDWARVGYVPQRTTAAGGVPATVTEVVSSGRLSRARLGILRKADHEAVRRALDLVGMADRAKDSVNALSGGQHQRVLIARALAAEPELLIMDEPMAGVDLASQEVLATTLRAQVAAGTTVLLVLHELGPLEPLIDRAVVLRDGCVLHDGPPPEAVGQHALPGHDHVHPHAPAGAEPIRTGLLS
>NZ_CP015866.1|WP_064727791.1|2294827_2295730_+|metal-ABC-transporter-permease
MEILNYAFMQRALLAAVLVGVTAPAIGIYLVQRRQALMGDGIGHVAMTGVGLGFLLSWSPVWMATLVSVLGAVLMELIRWYGKTRGDVALAMLFYGGMAGGVMFINLAPGGSNANLTSYLFGSLSTVSESDVTAICLLAAFVVLVTLGLRRQLFAVSQDEEFARVTGLPVRALNLLTAVTAAVTVTVAMRVVGLLLVSALMVVPVAAAQQLTRSFAATFAVSVAIGVAVTLSGTVTSYYQDVPPGATIVLLTIGAFVLMTVLAAPLARRRARAASAAGPAADPAECRVPATRGAADDAGV
>NZ_CP015866.1|WP_064727792.1|2295790_2296210_+|transcriptional-repressor
MTTAGPPVKGRATRQRAAVSAALQEVEEFRSAQELHDMLKHKGDSVGLTTVYRTLQSLADAGEVDVLRTADGESVYRRCSTDDHHHHLVCRTCGKAVEVEGPAVEKWAEAIAAEHGYVNVAHTVEIFGTCADCAAASRG
>NZ_CP015866.1|WP_064727793.1|2296284_2297121_-|isoprenyl-transferase
MAVRGILGRQRREYRTPEPHPSGARPPGLGELVPEHVAIVMDGNGRWAKERGLPRTEGHKVGAERVLDVLQGAIEMGVKNISLYAFSTENWKRSPDEVRFLMNFNRDFIRKTRDQLDELGIRVRWVGRMPKLWKSVAKELQVAQEQTKDNDRLTLYFCMNYGGRAEIADAAQALAEDVRAGRLDPSKVNEKTLAKYLYYPDMPDVDLFLRPSGEQRTSNYLLWQSAYAEMVFQDVLWPDFDRRDLWRACLEFASRDRRFGGAIPNEELLAMEGRSGGN
>NZ_CP015866.1|WP_064731742.1|2297184_2297934_-|DNA-repair-protein-RecO
MSLFRDDGIVLRTQKLGEADRIITLLTRGHGRVRAVARGVRRTKSKFGARLEPFSHVDVQFFARNSELVGRGLPLCTQSETIAPYGGGIVTDYARYTAGTAMLETAERFTDHEGEPAVQQYLLLVGALRTLARGEHAPNLVLDAFLLRSLAVNGYAPTFGDCAKCGLPGPNRFFSVGSGGSVCGDCRVPGSVVPSPQALELLGALLTGDWGTADACEPRYVREGSGLVSAYLHWHLERGLRSLRYVEKS

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Crispr_ID: NZ_CP015866_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP015866_2

2567200-2567312

Orphan

Consensus_repeat	Method
CTGGTAGATCCGGGCGCTGCCGGAGGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP015866_2

>merge|NZ_CP015866|2|2567200-2567312|CRISPRCasFinder
CTGGTAGATCCGGGCGCTGCCGGAGGCACGGCCCTCCATCGGCCGCGGCACGCTCACCGTTCGGTGATGTGCTGGTCGCGGCCGGCCTGGTAGATCCGGGCGCTGCCCGAGGC

>NZ_CP015866|2|2|2567200-2567312|CRISPRCasFinder
CTGGTAGATCCGGGCGCTGCCGGAGGC	ACGGCCCTCCATCGGCCGCGGCACGCTCACCGTTCGGTGATGTGCTGGTCGCGGCCGGC
CTGGTAGATCCGGGCGCTGCCCGAGGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP015866.1\|WP_064727982.1\|2555547_2557395_+\|beta-N-acetylhexosaminidase	unknown	unknown	gnl\|CDD\|366376
NZ_CP015866.1\|WP_064727994.1\|2573631_2574423_+\|phosphatase	unknown	unknown	gnl\|CDD\|374030
NZ_CP015866.1\|WP_064727986.1\|2560211_2563940_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224055
NZ_CP015866.1\|WP_064727991.1\|2569415_2570387_-\|agmatinase	unknown	unknown	gnl\|CDD\|212538
NZ_CP015866.1\|WP_064727997.1\|2576319_2577477_-\|acyl-CoA-dehydrogenase	unknown	unknown	gnl\|CDD\|173849
NZ_CP015866.1\|WP_064727980.1\|2553539_2554382_-\|DUF4097-family-beta-strand-repeat-protein	unknown	unknown	gnl\|CDD\|372574
NZ_CP015866.1\|WP_064727978.1\|2551517_2552459_-\|EamA-family-transporter	unknown	unknown	gnl\|CDD\|183142
NZ_CP015866.1\|WP_064727984.1\|2558208_2559633_-\|aminopeptidase	unknown	unknown	gnl\|CDD\|283275
NZ_CP015866.1\|WP_064727985.1\|2559741_2560134_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP015866.1\|WP_064727981.1\|2554470_2554989_-\|toxin-antitoxin-system-HicB-family-antitoxin	unknown	unknown	gnl\|CDD\|226679
NZ_CP015866.1\|WP_064727995.1\|2574436_2575411_-\|cation-diffusion-facilitator-family-transporter	unknown	unknown	gnl\|CDD\|223131
NZ_CP015866.1\|WP_064727987.1\|2564169_2564991_+\|ribonuclease	unknown	unknown	gnl\|CDD\|225231
NZ_CP015866.1\|WP_064727999.1\|2578283_2579900_+\|methylcrotonoyl-CoA-carboxylase	unknown	unknown	gnl\|CDD\|178415
NZ_CP015866.1\|WP_064727979.1\|2552599_2553517_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176115
NZ_CP015866.1\|WP_064727983.1\|2557518_2558181_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP015866.1\|WP_064727990.1\|2567733_2569419_-\|thiamine-pyrophosphate-binding-protein	unknown	unknown	gnl\|CDD\|223107
NZ_CP015866.1\|WP_064727996.1\|2575416_2576289_-\|acyl-CoA-thioesterase-II	unknown	unknown	gnl\|CDD\|224857
NZ_CP015866.1\|WP_079163511.1\|2572002_2573589_+\|PucR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|377939
NZ_CP015866.1\|WP_064727992.1\|2570439_2571906_-\|sodium:solute-symporter	unknown	unknown	gnl\|CDD\|271373
NZ_CP015866.1\|WP_064727998.1\|2577574_2578186_-\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|366102

Protein	Function_ID	Function_description	E-value
NZ_CP015866.1\|WP_064727982.1\|2555547_2557395_+\|beta-N-acetylhexosaminidase	gnl\|CDD\|366376	pfam00933, Glyco_hydro_3, Glycosyl hydrolase family 3 N terminal domain.	6.09734e-129
NZ_CP015866.1\|WP_064727986.1\|2560211_2563940_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224055	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms].	8.81847e-170
NZ_CP015866.1\|WP_064727991.1\|2569415_2570387_-\|agmatinase	gnl\|CDD\|212538	cd11592, Agmatinase_PAH, Agmatinase-like family includes proclavaminic acid amidinohydrolase. This agmatinase subfamily contains bacterial and fungal/metazoan enzymes, including proclavaminic acid amidinohydrolase (PAH, EC 3.5.3.22) and Pseudomonas aeruginosa guanidinobutyrase (GbuA) and guanidinopropionase (GpuA). PAH hydrolyzes amidinoproclavaminate to yield proclavaminate and urea in clavulanic acid biosynthesis. Clavulanic acid is an effective inhibitor of beta-lactamases and is used in combination with amoxicillin to prevent the beta-lactam rings of the antibiotic from hydrolysis and, thus keeping the antibiotic biologically active. GbuA hydrolyzes 4-guanidinobutyrate (4-GB) into 4-aminobutyrate and urea while GpuA hydrolyzes 3-guanidinopropionate (3-GP) into beta-alanine and urea. Mutation studies show that significant variations in two active site loops in these two enzymes may be important for substrate specificity. This subfamily belongs to the ureohydrolase superfamily, which includes arginase, agmatinase, proclavaminate amidinohydrolase, and formiminoglutamase.	3.03086e-168
NZ_CP015866.1\|WP_064727997.1\|2576319_2577477_-\|acyl-CoA-dehydrogenase	gnl\|CDD\|173849	cd01160, LCAD, Long chain acyl-CoA dehydrogenase. LCAD is an acyl-CoA dehydrogenases (ACAD), which is found in the mitochondria of eukaryotes and in some prokaryotes. It catalyzes the alpha, beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of LCAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. LCAD acts as a homodimer.	6.63056e-143
NZ_CP015866.1\|WP_064727980.1\|2553539_2554382_-\|DUF4097-family-beta-strand-repeat-protein	gnl\|CDD\|372574	pfam13349, DUF4097, Putative adhesin. This has a putative all-beta structure with a twenty-residue repeat with a highly conserved repeating GD, gly-asp, motif. It may form part of a bacterial adhesin.	7.34728e-06
NZ_CP015866.1\|WP_064727978.1\|2551517_2552459_-\|EamA-family-transporter	gnl\|CDD\|183142	PRK11453, PRK11453, O-acetylserine/cysteine exporter.	7.88128e-60
NZ_CP015866.1\|WP_064727984.1\|2558208_2559633_-\|aminopeptidase	gnl\|CDD\|283275	pfam05576, Peptidase_S37, PS-10 peptidase S37. These serine proteases have been found in Streptomyces species.	0
NZ_CP015866.1\|WP_064727992.1\|2570439_2571906_-\|sodium:solute-symporter	gnl\|CDD\|271373	cd11479, SLC5sbd_u3, Uncharacterized bacterial solute carrier 5 subfamily; putative solute-binding domain. SLC5 (also called the sodium/glucose cotransporter family or solute sodium symporter family) is a family of proteins that co-transports Na+ with sugars, amino acids, inorganic ions or vitamins. Prokaryotic members of this family include Vibrio parahaemolyticus glucose/galactose (vSGLT), and Escherichia coli proline (PutP) and pantothenate (PutF) cotransporters. One member of the SLC5 family, human SGLT3, has been characterized as a glucose sensor and not a transporter. This subfamily belongs to the solute carrier 5 (SLC5) transporter family.	0
NZ_CP015866.1\|WP_064727981.1\|2554470_2554989_-\|toxin-antitoxin-system-HicB-family-antitoxin	gnl\|CDD\|226679	COG4226, HicB, Predicted nuclease of the RNAse H fold, HicB family [General function prediction only].	0.000719626
NZ_CP015866.1\|WP_064727995.1\|2574436_2575411_-\|cation-diffusion-facilitator-family-transporter	gnl\|CDD\|223131	COG0053, MMT1, Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism].	7.55308e-44
NZ_CP015866.1\|WP_064727987.1\|2564169_2564991_+\|ribonuclease	gnl\|CDD\|225231	COG2356, EndA, Endonuclease I [DNA replication, recombination, and repair].	4.41803e-49
NZ_CP015866.1\|WP_064727999.1\|2578283_2579900_+\|methylcrotonoyl-CoA-carboxylase	gnl\|CDD\|178415	PLN02820, PLN02820, 3-methylcrotonyl-CoA carboxylase, beta chain.	0
NZ_CP015866.1\|WP_064727979.1\|2552599_2553517_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|176115	cd08423, PBP2_LTTR_like_6, The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator, contains the type 2 periplasmic binding fold. LysR-transcriptional regulators comprise the largest family of prokaryotic transcription factor. Homologs of some of LTTRs with similar domain organizations are also found in the archaea and eukaryotic organisms. The LTTRs are composed of two functional domains joined by a linker helix involved in oligomerization: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal substrate-binding domain, which is structurally homologous to the type 2 periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcriptional repressor undergoes a conformational change upon substrate binding which in turn changes the DNA binding affinity of the repressor. The genes controlled by the LTTRs have diverse functional roles including amino acid biosynthesis, CO2 fixation, antibiotic resistance, degradation of aromatic compounds, nodule formation of nitrogen-fixing bacteria, and synthesis of virulence factors, to a name a few. This substrate-binding domain shows significant homology to the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	5.91271e-62
NZ_CP015866.1\|WP_079163511.1\|2572002_2573589_+\|PucR-family-transcriptional-regulator	gnl\|CDD\|377939	pfam07905, PucR, Purine catabolism regulatory protein-like family. The bacterial proteins found in this family are similar to the purine catabolism regulatory protein expressed by Bacillus subtilis (PucR). PucR is thought to be a transcriptional activator involved in the induction of the purine degradation pathway, and may contain a LysR-like DNA-binding domain. It is similar to LysR-type regulators in that it represses its own expression. The other members of this family are also annotated as being putative regulatory proteins.	1.1958e-23
NZ_CP015866.1\|WP_064727990.1\|2567733_2569419_-\|thiamine-pyrophosphate-binding-protein	gnl\|CDD\|223107	COG0028, IlvB, Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism].	2.18513e-143
NZ_CP015866.1\|WP_064727996.1\|2575416_2576289_-\|acyl-CoA-thioesterase-II	gnl\|CDD\|224857	COG1946, TesB, Acyl-CoA thioesterase [Lipid metabolism].	8.09175e-125
NZ_CP015866.1\|WP_064727994.1\|2573631_2574423_+\|phosphatase	gnl\|CDD\|374030	pfam15698, Phosphatase, Phosphatase. Members of this family have phosphatase activity.	8.99462e-133
NZ_CP015866.1\|WP_064727998.1\|2577574_2578186_-\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|366102	pfam00440, TetR_N, Bacterial regulatory proteins, tetR family.	2.67781e-13

>NZ_CP015866.1|WP_064727987.1|2564169_2564991_+|ribonuclease
MLATRTGRRRAAALAATAALAALAAPSLAATPATATPPAAPAPADYDDTYYKDAAGKTGDDLKAALHTIISDQTKLSYDAVWDALKATDQDPADSGSVILLYSGLSRAKSANGGDGGDWNREHVWAKSHGDFGTATGPGTDLHHLRPEDVAVNAVRGNKDFDDGGSGFTDSGGSLTDADSFEPRDAVKGDVARMIFYMATRYEGGEGFADLEVNGSVDNGSNPYIGKVSVLKTWNDEDPPDAFEERRNQVIYDTYQHNRNPFVDHPEWVGAIW
>NZ_CP015866.1|WP_064727986.1|2560211_2563940_-|ABC-transporter-ATP-binding-protein
MDAQRGWTRRLAGYAWRYPKDVVLALGASLGGMAVMALVPLITKVIIDDVIGDKTRDMAVWAGLLVGAAAVVYVMTYIRRYYGGRLALDVQHDLRTDMYGTITRLDGRRQDELSTGQVVGRATSDLQLIQGLLFMLPMTIGNVLLFLISLVIMALLSPPLTLVAIAVAPALWFIARRSRSRLHPATWYAQAQAAAVAGVVDGSVSGVRVVKGFGQEEQETGKLREVGRKLFAGRLRTIRLNAAYTPALQAVPALGQVAMLALGGWLAVGGHITLGTFVAFSTYLAQLVGPVRMLAVVLTVAQQARAGTERVLELIDTEPSIEDGTKTLPADAPASVEFDDVSFGYDADRPVLDGLSFEIRAGETLAVVGSSGSGKSTVSLLLPRFYDVTRGAVLVGGHDVRELTTDSLRAAVGLVPEDSFLFSDTVRANIAYGRPDATDEEIEAAARAAQAHGFVSALPDGYDTTVGEHGLTLSGGQRQRVALARAILTDPRLLVLDDATSAVDARVEHEIHEALGQVMRGRTTLLIAHRRSTLGLADRIAVLDHGRLADLGTHEELQERSALYRRLLTDPDELGGVSPGHVPAAGPREDTSVRDELDAEFDAERGVTPRLWTGDRTPKDTALAGTPATPELLAQVDALPPADGTPDVDEARAVQPEESYGLRRLLRGFRTPLLISLALVAVDAGVGLLLPVLIRHGIDDGVTRLALGAVWAASLLGLVAVLAQWAAQTGEIRMTGRTGERILYSLRLKIFAQLQRLGLDYYERELTGRIMTRMTTDVDALSTFLQTGLVTAFVSVVTFFGILVALLVIDVQLAFVVFATLPPLIIATYFFRKASVKAYELARERVSTVNADLQESVAGLRIVQAFRREGDGGRRFAERSDSYRQARIRGQWLISIYFPFVQLLSSGAAAAVLIVGGGRIDDATLTTGALVAYLLYIDLFFAPVQQLSQVFDGYQQASVSLGRIQELLREPTSTRAAEKPAEVTSLDGDIAFEDVRFSYGAENDTEEALTGIDLRIPAGQTVAFVGETGAGKSTLVKLVARFYDPTGGRVTVDGQDLRALDLTSYRHRLGVVPQEAYLFPGTVRDAIAYGRPDATDADVEAAARSVGAHEMIATLTGGYLHEVAERGRNLSAGQRQLIALARAELVDPDVLLLDEATAALDLATEAQVNQATDRIAGRRTTLVVAHRLTTAARADRVVVMDGGRVAEDGTHDELLALDGRYARLWRTFIGAPEPEEPVGAAH
>NZ_CP015866.1|WP_064727985.1|2559741_2560134_-|hypothetical-protein
MRRAGAGTRRGPALATALLVAAGLLTVATPQEALAATACPGRKVRTLAFATGSVLVHRRGGYVCAVTVPGKPGTKRPMSVSVRARGGRAVTDSGRYAYRAGPVTVHAGKRCVWVTGKVSSRSVGSGWILC
>NZ_CP015866.1|WP_064727984.1|2558208_2559633_-|aminopeptidase
MRKALRWLLALVVLVGTVSTAGAATAAEPKAVDIKDRLLSIPGMSLIEEKPYTGYRFFVLNYTQPVDHRRPSKGTFQQRITVLHKDENRPTVFYTGGYNVSTTPSRREPTQIVDGNQVSMEYRYFTPSRPAPADWSKLDIWQAASDQHRIFEALKPLYKKNWISTGGSKGGMTATYYERFYPRDMDGVVAYVAPNDVVNKEDSAYDRFFARVGTDECRAKLNGVQREALVRRAPLEKKYEAYAAENGYTFDTIGSLDRAYEAVVLDYVWGFWQYSTLADCADIPADAKNATDEAIWDSVDSISGFSAYTDQGLETYTPYYYQAGTQLGAPTIHFPHIEKKYIRYGYQPPRNFVPRSIPMKFQPLAMWDVDRWVRHNARQMLFVYGQNDPWGAEPFRLGHGARDSYVFTAPGMNHGANVAGLVADQKAKATARILDWAGVASAKVQENPSAARPLASFDAKLDKRDVEREPALRP
>NZ_CP015866.1|WP_064727983.1|2557518_2558181_+|hypothetical-protein
MREGPAAWVLGVLCALLLTGCQSPAGPAGDGPGGTASASGRPGGGTASRPASAAVPPSGFGKVFLAVGECGSFGTVGSTEVPCGSERAAARVVARRDGRASDGPPCPATTDFVLHISEQRPAADEDGDGAVPQGYACMRKLQPPHPGDPGEGGGPRTIVGDCVHGTGDGKVRETACDGTGEREPRFKVVDAVADRADCPASTGLYVRLGGARPVGCARPL
>NZ_CP015866.1|WP_064727982.1|2555547_2557395_+|beta-N-acetylhexosaminidase
MHHSSTAGTGSTAHPSRRTVLTATAVVTAALAAGGGTAHADPHRPDDAKLRTLISRMTLEEKVGQLFVMRVYGHSATAPDQADIDANLEEIGVRTAAELVAKYRVGGVIYFAWAHNTRDPHQIADLSNGIQKASLELPRGLPVLISTDQEHGIVARVGEPATLFPGAMAVGAGGSRSDARTLGRIAGAELRAMGIRQDYAPDADVNVNPANPVIGVRSFGADPQAVAELVAAEVTGYQRSGVAACAKHFPGHGDTATDSHTGLPEITHTREEWQRLDAPPFRAAIEAGIDSIMTAHLVVPALDDSGDPATLSRPILTGILREELGYDGVVVTDSLGMEGVRTKYGDERVPVLALKAGVDQLLNPPDLDLAWNAVLTAVKDGELTEARLDESILRVLRLKAKLGLFREAYTSRRDVDRTVGTRAHLAEADRIAERTTTLLVNEGGLLPLSRRGHRKVLVVGADPASPSGTTGPPTGVLAGALTELGFTATALSTGTAPSAAVIDGAVAAAGDADAVVVATYNVTAASSQRTLVARLLETGKPVVAVAIRNPYDVAHLPGVRAQLAAYSWTDVEVRAAARVIAGRVRPRGKLPVPVVRADDPETVLLPLGHGLSYRS
>NZ_CP015866.1|WP_064727981.1|2554470_2554989_-|toxin-antitoxin-system-HicB-family-antitoxin
MDLTPYVDHLRRELAVAAEAGGDEARELAERLTAPLESATRLTMLNVLSAAMDEITRELAPGSVDLRLRGLDPDFVVTVPPADGGEPADPAGPAEPFRPQAPAEGDEGGTARVNLRLPAHLKARAEEAASREGLSVNAWLVRAVSAAVEGGARPRTAERTRNVGQSFTGWVR
>NZ_CP015866.1|WP_064727980.1|2553539_2554382_-|DUF4097-family-beta-strand-repeat-protein
MPSFDTPEPISVTAHVEAGSIQFTAGDRTDTVVEVRPRNEKKDVDGRTAEQTEVTCAGGALTVRTPKAGLFGRSGTVDVTVELPAGSRVDLTGAWTQVLGEGRLGQVRVKVSSGDVRFDTTGPLHLTASHGSITVDRVEGPSEIATSSGSLRVGLLDGPAVLKNSHGTTTVGTAVGELRVNGANGDIDVTRAEDSVTAATAHGTLRVGRVARGSVELQTSYGAIEIGVAEGTAAWLDVNSRSGQVRNTLTSSGSPEGSEEAVEVRARTRHGNIDIRRARD
>NZ_CP015866.1|WP_064727979.1|2552599_2553517_+|LysR-family-transcriptional-regulator
MLDLQRLRALHAVSVYGTVGAAAAALGFTPSAVSQQIAKLERETRTVLLEREGRGVRLTDEAWQLAAAAAELLALVERAETRLEERRGVPSGRLTVAAFASAARGLLPSVLADLAARHPALDARLTEVDPHLSVDLVAKGAVDLVVAHDWDIAPLPAPAGVEQAPIGEDLCDLLVPAGHRFAGRAAVRRAELGGERWICQPPGRVCHDWLMRTLRGAGHEPDIVHQADENPTLVALVAAGLGVALIPRLGRGPLPAGVVEVPLDPMPVRRLYALWRAGAARRPAIAETVRTLRAHWPAVSARTAA
>NZ_CP015866.1|WP_064727978.1|2551517_2552459_-|EamA-family-transporter
MRPSHLLLAVLVAAVWGVNFTVIEIGLGHFPPLLFSALRFLAAALPAVFLVGRPKVAWKWILAVGLVLGVAKFGLVFVGMDAGMPAGLSSLVLQIQAVFTAVIAAAVLGERPSRVQAAGMLVALAGIGVAAADEGASGPLGAFLMVVGAAAAWGLSNVLTRKASPPDALNFMVWVCTVPVLPLLALSLLTEGPAADLAALRGLDWQGAGTIVFVAWVSTVFGFGAWGWLLRRHPASTVAPFSLLVPVFGMSSAALFLGEAVTPLRWCAAALLVGGVALTTLTGARRVPGRIRARGAAPVPAEGAATPALTPRR
>NZ_CP015866.1|WP_064727990.1|2567733_2569419_-|thiamine-pyrophosphate-binding-protein
MTHDHDLVLRPTAAQTEAALNPPPGRNGGDLVVETLAGLGATTVFGLPGQHALGMFDALRRSDLRYIGLRVENNAGFAADAYGRITGEAAPLLLSTGPGALTSLAALQEARAASAPVLAISSQIPTAGLGGGRHGYLHELPDQSASFRGVVKSVHTVRSQSQIPSAIAEAWTSALTVPHGPVWVEIPQDVLLSETPVPVVTGGDAFPEELPPRPELTAVAADLLSRAERPAIIAGGGVVRADASGKLRQLAERLSAPVVTTFGGKGAFPWTHPLSLQSWLEDRHTTDFLEDADVLLVVGSGLGELSSNYHTFKPRGRVVQIEADLGKLESNHPALGIHADARLALQALLETVQERTDPSAPARVREVLGKVRERIESQELTLEQGVLASVRAALPPGAPSFWDMTILAYWAWSAFDAKAPNTMHSAQGAGGLGYGFPAALGAAAADPTHPVLAVSGDGGALYSIAELATARQYGLNVTWLIVDDGGYGILREYMTDAFGQPTATELTRPDYVALAESFGVPGVRTSSETLETDLAKALAIPGPSVVVLPAVLRMFAPTHTE
>NZ_CP015866.1|WP_064727991.1|2569415_2570387_-|agmatinase
MSSNETPRGPVDSSRIPRYAGPATFARLPRLDEVGKADVAVVGVPFDSGVSYRPGARFGGNAIREASRLLRPYNPAQDASPFALAQVADGGDIAVNPFNINEAVETVEAAADDLLGTGARLMTLGGDHTIALPLLRSVAKKHGPVALLHFDAHLDTWDTYFGAEYTHGTPFRRAVEEGVLDTSALSHVGTRGPLYGKQDLTDDEKMGFGIVTSADVYRRGADEVADQLRQRIGDRPLYISIDIDCLDPAHAPGTGTPEAGGMTSRELLEILRGLASCNLVSADVVEVAPAYDHAEITSVAASHTAYELTTIMSRQIAQEKAAK
>NZ_CP015866.1|WP_064727992.1|2570439_2571906_-|sodium:solute-symporter
MAVDYIVIVVYLAGMLAMGWWGMRRAKSKSEFLVAGRRLGPAMYSGTMAAIVLGGASTIGGVGLGYQYGFSGAWMVVTIGLGLLALSVFFSARIARLKVYTVSEMLDLRYGGKAGVISGVVMWAYTLMLAVTSTIAYATIFDVLFDVNRTLAIILGGSIVVAYSTLGGMWSITLTDMVQFVVKTIGVLLLLLPIAVVKAGGFSEMKAQLPTEYFDPLGVGGETIFTYVLIYTFGMLIGQDIWQRVFTAGSDRTAKWGGTIAGTYCLVYAVAGAVIGTAAKVLYPKLASPDDAFATIVKDELPMGVRGLVLAAALAAVMSTSSGALIACATVANNDIWSRLRGALRKPRDGGHDEVKGNRVFILAMGVLVVVIAIALNDVVEALTVAYNLLVGGLLVPILGGLLWKRGTAQGALAAVAVGGLTVVGLMAGFGVLANEPIYYGLLASLAVYVAVSLATRPTDEAILAAWRERLAGRSPESPSEPPVPAPQ
>NZ_CP015866.1|WP_079163511.1|2572002_2573589_+|PucR-family-transcriptional-regulator
MEETSIMPEPAVPSVPSASPAPPAPPTPPVSLAALLSREDLGLRQIAGPPAADVRVHWAHTSEMSDPYPYLLGGELLLTAGVHVPEAAGSGTYFDDYVARIVEAGGAALGFGLAPVHDTVPRALVAACEAYGLPLVEVPERTTFSGVARAVWQLMARARLAELRRISEAQQGLAAAASRPDPVPSVLRRLAGRLEGRAVLYGPEGTEIAAAGREPGGEVRRALEELARFVTGHASSTATDTVAGTRLAAYALGTGQGFVLGVAAPHRESGDHTIASVAAVLLSLLTGEHQSGTGAARSSALVRLLLGARREEVAPLLAGGGGEAPRWHVVHARPDTGTPDPVSASALGAALGSPLVDTAEEVVRVLVPVAGSAEPAGTTSTTASSPASPPAPQPGWVLGVSAAVGPAEWPAADVQAARALARARAVRAPLVRHGDRPALADLVPAGEAEAHARALLAPVAAVPALTETLRAWLSLHGSWDRTAVALSVHRNTVRQRIARCAALLETDLDDPDVRMELWFALRDPRPSE
>NZ_CP015866.1|WP_064727994.1|2573631_2574423_+|phosphatase
MPIPGTPSRAELAEHLVRTRIAGDVATPRENNLSHYRKLANGDRGFWLGLELGDRWTDEQDVLAVMAERVGVNDDPEYRYGQDTIDPELTVAALERMAGRLRKAADGGQRVLFATGHPGGLLDVHRATADALRGAGCEIVVIPEGLTTEEGYVQQFADVAVLEHGASLWHTHSGEPMKAILTGLERAGRPLPDLVVADHGWAGYAAQHGVDSVGYADCNDPALFLAESEGTLQVAVPLDDHVVSPRYYDPMTAYLLGEAGLAG
>NZ_CP015866.1|WP_064727995.1|2574436_2575411_-|cation-diffusion-facilitator-family-transporter
MAEPARDDTGGGESTFTVLVAAFANLGIAVAKAVAGVISGSSAMLSEAAHSVADTVTEVLLLASLKRSERPADEDHPLGHGPERYIWALLAAVATFVGGAVFSLYDGVHTLTHGEEPGDPLVAYLVLAVAFLLEGYSLRTGLRQARGEARRYRVSFGRYLRRTPDTAVKAVVMEDSAALAGLLLAAGGLLGGQLTGSGVWDGVASLCIGALLLYVAWVLGRSNAEFLIGRPLPRSVRERIRAELVAVEHIEAVLELTTLLQGPREALVAAKVDFRDVATAAQIEWASERAEQRLREEFPMIRRVYLDPTPGFAQRRSEGLNPWP
>NZ_CP015866.1|WP_064727996.1|2575416_2576289_-|acyl-CoA-thioesterase-II
MSEALQSLLDLLDLERIEEDIYRGRSRSAVVPRVFGGQVAAQALVAAGRTVPADRHAHSLHAYFLRPGDPGAPIVYNVDRLRDGRSFTTRRVVAVQHGKPIFGLSASFQSYEEGLDHQAPMPPAPDPETLPTGEERLRSYPHLPAETVERFLEARAAVDLRYVDDPPFGDFGTPRDPHSQVWFRTNGKLADDPLLHVVLATYVSDMTLLDSVLLAHGRGGWAVGDVVGASLDHAMWFHRPFRADEWLLYDQQSPSASGGRGLGQARIHTRDGRLAVSVVQEGVVRVPREH
>NZ_CP015866.1|WP_064727997.1|2576319_2577477_-|acyl-CoA-dehydrogenase
MRRTVFNEDHEAFRETIRAFIEGEVVPVYDEWFAAGQAPRDFYHKLGDLGIFGINVPEEFGGAGMDSHKFEAVLYEETARAGVQFGGSGVHVLLALPYIKMLATDEQKKRYLPKFVTGEEMWAIAMTEPGTGSDLAGMKSTAKLSEDGTHYVLNGAKTFITGGVHADKVIVCARTAAPTSDDRRHGISLFAVDTKSEGYSVGRKLDKLGLRTSDTAELAFVDVKVPVEDLLGEENRGFSYLGHNLASERWGIAFGAYAQAKAAVRFAKQYVQDRTVFGKPVAHFQNTKFELAACQAEVDAAEAVADRATEALDAGELTPAEAASAKLFCTEVAHRVIDRCLQLHGGYGYMNEYPIARLYADNRVNRIYGGTSEIMKSIIAKNMGL
>NZ_CP015866.1|WP_064727998.1|2577574_2578186_-|TetR/AcrR-family-transcriptional-regulator
MATRTDAPTRREQILKEAARLFAERGFHGVGVDEIGAAVGISGPGLYRHFAGKDAMLAELLVGISEQLLTGAKRRLAEAEGVAGSGAGAEAVLDSLIEGHIDFALDDRPLITLHDRELDRLRDADRKMVRQLQRQYVELWVGVVREVYPAVAEPSARSAVHSVFGLLNSTPHLGRPGSLPGRAVTAELLHRMARGAFAAVGGE
>NZ_CP015866.1|WP_064727999.1|2578283_2579900_+|methylcrotonoyl-CoA-carboxylase
MHEAPELTTAADPASEAFRANEEAHRVLVEELRAKLAAARLGGGERARARHTARGKLLPRDRVDTLLDPGSPFLELAPLAADGLYDGQAPAAGVIAGIGRVAGRECVVVANDATVKGGTYYPMTVKKHLRAQEVALENRLPCLYLVDSGGAFLPMQDEVFPDREHFGRIFYNQARMSGAGIPQIAAVLGSCTAGGAYVPAMSDEAVIVRGQGTIFLGGPPLVKAATGEVVTAEELGGGEVHSRVSGVTDHLAEDDAHALRIVRQIVSTLPERGPLPWAVEPAAEPKADPHGLYGAVPVDSRTPYDVREVIARVVDGSRFAEFKSEYGQTLVTGFARIHGHPVGIVANNGILFSESAQKGAHFIELCDQRGIPLVFLQNISGFMVGRDYEAGGIAKHGAKMVTAVACTRVPKLTVVVGGSYGAGNYSMCGRAYSPRFLWMWPNAKISVMGGEQAASVLATVKRDQLEARGEEWSAEDEETFKAPVRAQYEHQGNAYYASARLWDDGVIEPADTRRVLGLALTACANAPLGEPRFGVFRM

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Crispr_ID: NZ_CP015866_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP015866_3

3265448-3265527

Orphan

Consensus_repeat	Method
TACAGCGGCGGCAGCGGCGGCAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP015866_3

>merge|NZ_CP015866|3|3265448-3265527|CRISPRCasFinder
TACAGCGGCGGCAGCGGCGGCAATTGCCTGGAGATCGCTCGCTGGCGCAAGTCCACGTACAGCGGCGGCAGCGGCGACAA

>NZ_CP015866|3|3|3265448-3265527|CRISPRCasFinder
TACAGCGGCGGCAGCGGCGGCAA	TTGCCTGGAGATCGCTCGCTGGCGCAAGTCCACG
TACAGCGGCGGCAGCGGCGACAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP015866.1\|WP_064728529.1\|3266431_3267967_-\|carboxylesterase/lipase-family-protein	unknown	unknown	gnl\|CDD\|225181
NZ_CP015866.1\|WP_064728521.1\|3259376_3260321_+\|MurR/RpiR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224651
NZ_CP015866.1\|WP_004929928.1\|3271321_3271525_-\|cold-shock-protein	unknown	unknown	gnl\|CDD\|224197
NZ_CP015866.1\|WP_064728523.1\|3261441_3262011_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP015866.1\|WP_064728525.1\|3262606_3263359_-\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|235816
NZ_CP015866.1\|WP_159394614.1\|3265682_3266435_-\|translation-initiation-factor-IF-2	unknown	unknown	unknown
NZ_CP015866.1\|WP_064728522.1\|3260450_3261386_+\|N-acetylmuramic-acid-6-phosphate-etherase	unknown	unknown	gnl\|CDD\|235467
NZ_CP015866.1\|WP_064728527.1\|3264585_3265425_+\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|238045
NZ_CP015866.1\|WP_064728524.1\|3262012_3262597_+\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|380066
NZ_CP015866.1\|WP_064728531.1\|3269364_3270990_-\|chaperonin-GroEL	unknown	unknown	gnl\|CDD\|234573
NZ_CP015866.1\|WP_064728534.1\|3273938_3274883_+\|glucosyl-3-phosphoglycerate-synthase	unknown	unknown	gnl\|CDD\|237556
NZ_CP015866.1\|WP_064728532.1\|3271962_3272238_-\|MoaD/ThiS-family-protein	unknown	unknown	gnl\|CDD\|340594
NZ_CP015866.1\|WP_064728530.1\|3268010_3269141_-\|NADH:flavin-oxidoreductase	unknown	unknown	gnl\|CDD\|240095
NZ_CP015866.1\|WP_064728535.1\|3274945_3276334_+\|trehalose-6-phosphate-synthase	unknown	unknown	gnl\|CDD\|340820
NZ_CP015866.1\|WP_064728533.1\|3272326_3273619_-\|threonine-synthase	unknown	unknown	gnl\|CDD\|236065
NZ_CP015866.1\|WP_064728519.1\|3258621_3258921_-\|DUF4031-domain-containing-protein	unknown	unknown	gnl\|CDD\|379076
NZ_CP015866.1\|WP_064728536.1\|3276438_3277308_-\|trehalose-phosphatase	unknown	unknown	gnl\|CDD\|319767
NZ_CP015866.1\|WP_064728520.1\|3258931_3259309_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP015866.1\|WP_064728526.1\|3264077_3264467_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP015866.1\|WP_064731821.1\|3263454_3264081_+\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224228

Protein	Function_ID	Function_description	E-value
NZ_CP015866.1\|WP_064728521.1\|3259376_3260321_+\|MurR/RpiR-family-transcriptional-regulator	gnl\|CDD\|224651	COG1737, RpiR, Transcriptional regulators [Transcription].	1.80161e-71
NZ_CP015866.1\|WP_064728527.1\|3264585_3265425_+\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	1.25893e-09
NZ_CP015866.1\|WP_004929928.1\|3271321_3271525_-\|cold-shock-protein	gnl\|CDD\|224197	COG1278, CspC, Cold shock proteins [Transcription].	2.85773e-35
NZ_CP015866.1\|WP_064728522.1\|3260450_3261386_+\|N-acetylmuramic-acid-6-phosphate-etherase	gnl\|CDD\|235467	PRK05441, murQ, N-acetylmuramic acid-6-phosphate etherase; Reviewed.	6.02652e-157
NZ_CP015866.1\|WP_064728524.1\|3262012_3262597_+\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|380066	pfam17940, TetR_C_31, Tetracyclin repressor-like, C-terminal domain. This is the C-terminal domain found in putative transcriptional regulator, TetR family proteins.	1.60331e-16
NZ_CP015866.1\|WP_064728529.1\|3266431_3267967_-\|carboxylesterase/lipase-family-protein	gnl\|CDD\|225181	COG2272, PnbA, Carboxylesterase type B [Lipid metabolism].	1.8538e-114
NZ_CP015866.1\|WP_064728519.1\|3258621_3258921_-\|DUF4031-domain-containing-protein	gnl\|CDD\|379076	pfam13223, DUF4031, Protein of unknown function (DUF4031). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria and viruses. Proteins in this family are typically between 91 and 130 amino acids in length. There is a conserved HYD sequence motif.	4.5331e-34
NZ_CP015866.1\|WP_064728531.1\|3269364_3270990_-\|chaperonin-GroEL	gnl\|CDD\|234573	PRK00013, groEL, chaperonin GroEL; Reviewed.	0
NZ_CP015866.1\|WP_064728534.1\|3273938_3274883_+\|glucosyl-3-phosphoglycerate-synthase	gnl\|CDD\|237556	PRK13915, PRK13915, putative glucosyl-3-phosphoglycerate synthase; Provisional.	5.63765e-167
NZ_CP015866.1\|WP_064728532.1\|3271962_3272238_-\|MoaD/ThiS-family-protein	gnl\|CDD\|340594	cd17074, Ubl_CysO_like, ubiquitin-like (Ubl) domain found in Mycobacterium tuberculosis CysO and similar proteins. CysO, also termed 9.5 kDa culture filtrate antigen cfp10A, together with CysM (Cysteine synthase M), forms a protein complex CysM-CysO that represents a new cysteine biosynthetic pathway in Mycobacterium tuberculosis. The replacement of the acetyl group of O-acetylserine by CysO thiocarboxylate to generate a protein-bound cysteine is catalyzed by CysM in a pyridoxal 5?-phosphate (PLP)-dependent manner. The family also includes QbsE that functions as the sulfide donor for the biosynthesis of thioquinolobactin in Pseudomonas fluorescens. A JAMM motif protein QbsD catalyzes removal of the carboxy-terminal dipeptide from QbsE. Both CysO and QbsE are similar to prokaryotic sulfur carrier proteins such as ThiS and MoaD, containing the beta-grasp ubiquitin-like fold.	1.51503e-42
NZ_CP015866.1\|WP_064728530.1\|3268010_3269141_-\|NADH:flavin-oxidoreductase	gnl\|CDD\|240095	cd04747, OYE_like_5_FMN, Old yellow enzyme (OYE)-related FMN binding domain, group 5. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.	0
NZ_CP015866.1\|WP_064728535.1\|3274945_3276334_+\|trehalose-6-phosphate-synthase	gnl\|CDD\|340820	cd03788, GT20_TPS, trehalose-6-phosphate synthase. Trehalose-6-Phosphate Synthase (TPS, EC 2.4.1.15) is a glycosyltransferase that catalyses the synthesis of alpha,alpha-1,1-trehalose-6-phosphate from glucose-6-phosphate using a UDP-glucose donor. It is a key enzyme in the trehalose synthesis pathway. Trehalose is a nonreducing disaccharide present in a wide variety of organisms and may serve as a source of energy and carbon. It is characterized most notably in insect, plant, and microbial cells. Its production is often associated with a variety of stress conditions, including desiccation, dehydration, heat, cold, and oxidation. This family represents the catalytic domain of the TPS. Some members of this domain family coexist with a C-terminal trehalose phosphatase domain.	1.79669e-135
NZ_CP015866.1\|WP_064728533.1\|3272326_3273619_-\|threonine-synthase	gnl\|CDD\|236065	PRK07591, PRK07591, threonine synthase; Validated.	0
NZ_CP015866.1\|WP_064728525.1\|3262606_3263359_-\|SDR-family-oxidoreductase	gnl\|CDD\|235816	PRK06500, PRK06500, SDR family oxidoreductase.	2.36883e-77
NZ_CP015866.1\|WP_064728536.1\|3276438_3277308_-\|trehalose-phosphatase	gnl\|CDD\|319767	cd01627, HAD_TPP, trehalose-phosphate phosphatase similar to Escherichia coli trehalose-6-phosphate phosphatase OtsB and Saccharomyces cerevisiae trehalose-phosphatase TPS2. Trehalose biosynthesis in bacteria is known through three pathways - OtsAB, TreYZ and TreS. The OtsAB pathway, also known as the trehalose 6-phosphate synthase (TSP)/ Trehalose-6-phosphate phosphatase (TPP) pathway, is the most common route known to be involved in the stress response of Escherichia coli. It involves converting glucose-6-phosphate and UDP-glucose to form trehalose-6-phosphate (T6P), catalyzed by TPS, the product of the otsA gene, this step is followed by the dephosphorylation of T6P to yield trehalose and inorganic phosphate, catalyzed by a specific TPP, the product of otsB gene. This OtsAB (or TSP/TPP) pathway, is also the most common route known to be involved in the stress response of yeast In Saccharomyces cerevisiae, the corresponding enzymes, TPS1p and TPS2p, form a multimeric synthase complex together with additional regulatory subunits encoded by Tsl1 and Tps3. Trehalose is a common disaccharide accumulated by organisms as a reservation of carbohydrate and in response to unfavorable growth conditions. This family belongs to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	4.86716e-32
NZ_CP015866.1\|WP_064731821.1\|3263454_3264081_+\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	1.47949e-11

>NZ_CP015866.1|WP_064728527.1|3264585_3265425_+|helix-turn-helix-domain-containing-protein
MPGPKDLDPSTSPRALLGAELRHAREKAGLSQEELGGRLFVSGSFIGQLESGTRRMQREYAALLDDALGTEDFFRRNCAASAKSKYPEHFAEAAEAEGSAAAIKEYASMLIPGLLQTPSYARAVCRAYQPTATDEVIDELVTARMERARMLADPTEPMLWAVIDESALRRATGGREVMAGALRHIAALMRENRVIVQVLPFDAGAHPAMQGCVKLMDFAGAPPLVYLEGVGTGRVDDDPATVGRYRFYYELLMVSALSPTNSLSMIEELAQNYAHGDDL
>NZ_CP015866.1|WP_064728526.1|3264077_3264467_-|hypothetical-protein
MRSTEEVVESLRQALVGAGVVLPSLCVDPVTGASDEPFALVDLGRCNVRVAERLASVVRGESPPVGTHAVDARDGRVGEVMGHVGGSVQLRPVGGGREWDCPHGSVAAAATDEVMRARLRRTNHESARG
>NZ_CP015866.1|WP_064731821.1|3263454_3264081_+|TetR/AcrR-family-transcriptional-regulator
METGRKRAPVGRPRGFDADEALERAMRVFWEHGYEGAGLTDLTQAMGITRTSMYAAFGNKEALFRKALERYEEGPASYLARALDEPTAREVATAFLNGSVCTTTSPGRPSGCLGVQGSLAAGESARAARDLLADWRNGGVDRLRDRFRRAVDEGDLPEDTDPALLARYLMTVANGIAVQAAGGATRDDLRQVADIALRGWPPVLHGTR
>NZ_CP015866.1|WP_064728525.1|3262606_3263359_-|SDR-family-oxidoreductase
MGQFDGKTAVITGGSSGIGLATAVRLAADGAHVFVTGRRKAELDAAVERIGAERATAVVGDIAEQADLDRLYEAVRARGRGLDVLFANAGSGAFATLEETTEEHYDQIFGVNVRGTVFTVQKALPLLNDGASVVVNTSVRADDGVEAFGTYAATKAAVRSYVRTWANELKGRGVRVNAVSPGTIATPAADAVAAGTPDPEATKARFAANVPLGRVGRPEEVAEVVAFLASERSSFVLGVNWHVDGGENQL
>NZ_CP015866.1|WP_064728524.1|3262012_3262597_+|TetR/AcrR-family-transcriptional-regulator
MVRRNDLRRAALVDAAIEVLAAQGARGLTFRAVDGEAAVPAGTASNYFANRDDLLTQTGARVYERLHPDEATIARQRAAGADRDTYVRLMRELVDRVSSFRSGYLALLELRLEATRRPGLRAVLTERIREDVDANVAYHEGSGLPGDATAVKLLYLALNWLIVEQLTLPDVFTEEERDRLVTAAVERIVVPDRN
>NZ_CP015866.1|WP_064728523.1|3261441_3262011_+|hypothetical-protein
MNHAQLTALGRALRLLGEHGEALTGDTPDAKLHEVRADVKRALDLLEESVESAAPSTRCPEHPNGPVDKAAPDLCLLCETRRRTARRAEYNGEPLPARTAEPVQSRYGVRGDRPQPQQRWLPELWNGQTWQLCGTPRRDRREAELYIAAQLRAPRAAMAYRLVHEFTDYEVLRVWGTPVRVDIEPMGGL
>NZ_CP015866.1|WP_064728522.1|3260450_3261386_+|N-acetylmuramic-acid-6-phosphate-etherase
MTATPHHPDLRSQLETLATEAFRPELAEIDQLATLDIARTMNAEDATVAAAVAARLPEIAAAIDAVAARMARGGRLVYAGAGTAGRLGVLDASECPPTFNTAPGQVVGLIAGGPDAMVTSVEGAEDSPELARADLDALGLTADDAVVGVSASGRTPYAVGAVEHARSVGALTVGLACNPGSALAAAAEHGIEVVTGPELITGSTRLKAGTAQKLVLNMLSTITMVRLGKTYGNLMVDVRASNEKLRARSRRIVALATGAADADIERALTATDGEVKHAILVLLADVDGPTAARLLADSDGHLRAALATAHG
>NZ_CP015866.1|WP_064728521.1|3259376_3260321_+|MurR/RpiR-family-transcriptional-regulator
MKETFAHASGGRRAGGGGTAPPAPAALAAKVRTLAPSMTRSMQRVAEAVAGDPAGCAALTVTGLAELTGTSEATVVRTARLLGYPGYRDLRLALAGLAAQQQSGRAPAITTDIAVDDPIADVVAKLAYDEQQTLADTAAGLDTGQLGAAVAALAAARRTDVYGIGASGLVAQDLTQKLLRIGLIAHAHNDPHLAVTNAVQLRAGDVALAITHSGSTGDVIEPLRAAFERGATTVAITGRPDSPVTQYADHVLTTSTSRESELRPAAMSSRTSQLLVVDCLFVGVAQRTYDSAAPALAASYEALAHRHGGSRGRP
>NZ_CP015866.1|WP_064728520.1|3258931_3259309_-|hypothetical-protein
MDPISPLEQVLHAARALVLADLVAGEVAEPDVVSLVEESVAERRWWVEQWPEGAEFVAGLVAQDVQDALLERYGRWPLCPVCGSGDPHALDVEPELGPDPHWVCGKAGVKVAAVGSLGATGGPAA
>NZ_CP015866.1|WP_064728519.1|3258621_3258921_-|DUF4031-domain-containing-protein
MTVYIDPPTWPGHGRLWSHLVSDVSYAELHAFAAALGVPRRAFERDHYDVPAQRYADAVSAGALEVSSREVVRLLHGAGLRHRKGTGPVPGAGAQRRSS
>NZ_CP015866.1|WP_159394614.1|3265682_3266435_-|translation-initiation-factor-IF-2
MSAGRVLRPLLLLAPLALLAVGCGAAEPSEAKAADAAREAARTVGERLYGQRPRTAEEAGREAAGMDGVEVMRVAGTSTHDGKGLVLVVRTSGSAYNSTFDLEEVVVRRCFAVRVSPGSEWREEPRDVDCPESLPLVFGPAPEPPELPAAELRAKLPRVPEGGRADETEVRRVLSALDMDPAVRTEVQAEDGRVGVLLLVPGDGFGAQDCVLARVGPGETEVWVPPRVQRMRGEAGCTVSNALHPAPLPH
>NZ_CP015866.1|WP_064728529.1|3266431_3267967_-|carboxylesterase/lipase-family-protein
MTIPGPVESVEPVVRTAAGAVRGRVEDGLAVFRGIPFAEPPVGAGRFAAPAPVRPWDGTRDAYAFGPPPPQDLGIAGPVGPPPGGDDWLTANVWTPEPGPAARRPVMVWIYGGAYRIGHSGSPGYDARRIAADGDLVVVTFNYRVGMEGFAHIEGAPANRGLLDQVAALEWVRDNIAAFGGDPGRVTVFGESAGAGSVAALLAMPSAAGLFGRAIAQSVPGTYFSPELARDIGTALADEAGLRPTVADLAAVAPEQLVKAGQALAPKMPGRVDRWGQAAPTVTPYAPVVDGEVLPVTPWRALASGASRDVDLVVGHNRDENRLFTMLAGKLGMIGEERAGAALRLYAPGGEAAYRAAFPDLSPNDLYERVQTDWLFGMPSLHLAEAHLAGGGRAHVYELTWPAPAHGGALGACHALDVPLLFGTFAADLGALLFAGAEPSPEALALSSRFRSSWTAFARTGDPGWPAYDTQRRLVQVLDAEPVVTPYPEEASRRLWEGREFPALPLAGQDA
>NZ_CP015866.1|WP_064728530.1|3268010_3269141_-|NADH:flavin-oxidoreductase
MTVTSVEAASRAARVLARPATINGLTVPNRIAMAPMTRMFSPGGVPGEDVVSYYSRRAAAGVGLIVTEGTYVGHDSAGQSSRVPRFHGEEQLAGWAKVAEAVHAAGGTIVPQLWHIGMVRKAGQPPFADAPAVGPSGLRIGEDEVTGTAMTRRDLDDVIGAFAQAAADAERIGFDGVEIHGAHGYLVDQFLWSGTNRRTDAYGGDAVARTRFAAEIVAAVREKVSPEFPVIFRYSQWKQEAYDARLAETPEELEAILAPLASAGVDAFHASTRRYWLPEFDGSDLNLAGWTKKLTGRTTITVGSVGLDGDFTKAFLGEGAPVGSLDNLLDRLERDEFDLVAVGRALLQDPLWAEKVLAGRFDTLAPYDAASLKTLS
>NZ_CP015866.1|WP_064728531.1|3269364_3270990_-|chaperonin-GroEL
MAKIIAFDEEARRGLERGMNQLADAVKVTLGPKGRNVVLEKKWGAPTITNDGVSIAKEIELEDPYEKIGAELVKEVAKKTDDVAGDGTTTATVLAQALVKEGLRNVAAGANPMALKRGIEKAVEAVSAALLEQAKDVETKEQIASTASISAADTQIGELIAEAMDKVGKEGVITVEESQTFGLELELTEGMRFDKGYISAYFATDMERMEASLDDPYILIANSKIGNVKDLLPLLEKVMQSGKPLLIIAEDVEGEALSTLVVNKIRGTFKSVAVKAPGFGDRRKAMLGDIAILTGGEVISEEVGLKLENASLDLLGRARKVVITKDETTIVDGAGSTDQVNGRVNQIRAEIENSDSDYDREKLQERLAKLAGGVAVIKAGAATEVELKERKHRIEDAVRNAKAAVEEGIVAGGGVALLQASQVFEKLELTGDEATGANAVKLALEAPLKQIAVNGGLEGGVVVEKVRNLQVGHGLNAASGEYVDMIAEGIIDPAKVTRSALQNAASIAALFLTTEAVIADKPEKAAAAGAPGGMPGGDMDF
>NZ_CP015866.1|WP_004929928.1|3271321_3271525_-|cold-shock-protein
MAQGTVKWFNAEKGYGFIAVDGGADVFVHYSAIQMDGYRTLEEGQRVEFEISQGQKGPQADMVRLSA
>NZ_CP015866.1|WP_064728532.1|3271962_3272238_-|MoaD/ThiS-family-protein
MSVTVRIPTILRTYTGGKAEVDAQGANLGEVISDLEKNHTGIAARVLDDQGKLRRFVNVYVNDDDVRFEQGLETATPDGAGVSIIPAVAGG
>NZ_CP015866.1|WP_064728533.1|3272326_3273619_-|threonine-synthase
MAVQTAETPTNSTDGTVDLGPAAALSCRECGHRVPLGPLFACQECFGPLEIAYDFSAYDTEELRGRIEAGPANIWRYAPLLPVPADVADKPNINPGWTKLVKADNLARELGVTGGLYVKDDSGNPTHSFKDRVVAQALEAARAFGFTTLSCSSTGNLAGAVGAAAARAGFRSCVFIPHDLEQGKVVMAAVYGGELVGIQGNYDDVNRFCSELIGDPAGEGWGFVNVNLRPYYAEGSKTLAYEICEQLGWRLPDQLVVPIASGSQLTKIDKGLQELIKLGLVEDKPYKIFGAQAEGCSPVSTAYKAGHDVVRPQKPDTIAKSLAIGNPADGPYVLDIARRTGGAVEDVTDEQVVDAIKLLARTEGIFAETAGGVTVGVTKKLVESGALDPSLTTVVLNTGDGLKTLDAVAGTGLTATIRPNLESFREAGLA
>NZ_CP015866.1|WP_064728534.1|3273938_3274883_+|glucosyl-3-phosphoglycerate-synthase
MLEEVERWLSARSWSAGDRPIRQLLAAKQATGQSVSVVLPALDEEATVGEIVTVIRRELMAEAPLVDEIVVVDSGSSDRTSAVAAAAGARVVHRDAILPRIPAVPGKGEVLWRSLLVTGGDIVCFVDADLREFSADFVSGTVGPLLTEPDVQLVKAMYDRPLGTRPGQGGRVTELVARPLLNLHWPRLAGFVQPLGGEYAARRSLLERLPFPVGYGVELGMLVDALHLVGLDALAQVDVGVRIHHHQDGQALGRMSAAIYRTAQLRLARGHLVRPALTQFERGPAGFEPRTHAVDTEERPPMTEIAEYVARRVA
>NZ_CP015866.1|WP_064728535.1|3274945_3276334_+|trehalose-6-phosphate-synthase
MASSFGAAQVLVASNRGPVSYEVREDGSLHAKRGGGGLVSGLSSIGPDAGALWVCSALGDGDREAVRRGVGEDGVRMLDVPADVHADAYNGIANSVLWFVHHMLYQTPVEPVFDAEFRRQWASYEAYNRAFAEALAEEAAEGAVAIVQDYHLTLVPGMLRELRPDLRIGHFSHTPWAPVDYFRLLPDDIAEQVLRGMLGADRLGFLTRRWADAFTACCEALVGGLGGTETGVHGLGADADFLRKRSHEADVDERMAALREEIGEGRRTIVRVDRTELSKNIVRGLLAYRELLATRPEWRERVVHVAFAYPSRQDLAVYRDYTAEVQRVADAVNEEFGTAGWTPVVLHVKDDFARSLAAYRLADVALVNPVRDGMNLVAKEVPVVSEEGCVLVLSREAGAYEELGEDAVVVNPYDVSGTAEALHTALSVPPAERAERSKRLAAAGTALPPARWFLEQLRALQG
>NZ_CP015866.1|WP_064728536.1|3276438_3277308_-|trehalose-phosphatase
MGSHQDSSRDDSRDHLPTPATEAGRAGLDALLAEPGRAVVALDFDGTLAPIVADPDRARAHPDAVPALAALAPKLAAVVVITGRPAEVAVRYGGFADVPGLDHLVVLGHYGAERWDAATGTLSTPEPHPGLAPVRAELPDLLERSGAGAGTWTEEKGHAVAVHTRRAPEPQAAFEALRVPLTELAARHGLIVEPGRMVLELRPPGMDKGAALRAYVRGTGAASVLYAGDDLGDLPAFAAVDVLRSEGTPGLLVCSGSDEVPDLRKGADLVVDGPTGVVRLLRALSTRLA

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Crispr_ID: NZ_CP015866_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP015866_4

3312913-3313187

Orphan

Consensus_repeat	Method
CGTCGGCCTCGGCGGCCTTCTGC	CRISPRCasFinder

4 spacers

The CRISPR arrays of NZ_CP015866_4

>merge|NZ_CP015866|4|3312913-3313187|CRISPRCasFinder
CGGCGTCCTTCGCGGCCTGCGCCCACTTCTGGACGTCCTTCTCGGCGGCGGCCCGCGTCTCCGCCTCGACCTCCGCCTCCGCCGCCCGCTCCTGCGCCTGGTCGTCGGCCGCGGACCTGCGCTGCGCCTCGGCCTCGGCGGCCTGCCGCGCCTTGTCCGCCTCCTCGGCCTCCTTCCGGAACCTGGCGGCGTCGGCCTCGGCGGCCTTCTGCTTGCGCTCCGCCTCTTCGCCCTGCTTCTGGAACCTCGCCACGTCGGCCTCGGCGGCCTTCTGC

>NZ_CP015866|4|4|3312913-3313187|CRISPRCasFinder
CGGCGTCCTTCGCGGCCTGCGCC	CACTTCTGGACGTCCTTCTCGGCGGCGGCCCGCGTCTCCGCCTCGA
CCTCCGCCTCCGCCGCCCGCTCC	TGCGCCTGGTCGTCGGCCGCGGACCTGCGCTGCG
CCTCGGCCTCGGCGGCCTGCCGC	GCCTTGTCCGCCTCCTCGGCCTCCTTCCGGAACCTGGCGG
CGTCGGCCTCGGCGGCCTTCTGC	TTGCGCTCCGCCTCTTCGCCCTGCTTCTGGAACCTCGCCA
CGTCGGCCTCGGCGGCCTTCTGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP015866.1\|WP_079163558.1\|3305677_3307126_-\|hydrogenase-expression-protein	unknown	unknown	gnl\|CDD\|238092
NZ_CP015866.1\|WP_064728555.1\|3297201_3298083_+\|hydroxyurea-phosphotransferase	unknown	unknown	gnl\|CDD\|309685
NZ_CP015866.1\|WP_064728570.1\|3324527_3326486_+\|putative-baseplate-assembly-protein	unknown	unknown	gnl\|CDD\|274051
NZ_CP015866.1\|WP_079163830.1\|3319867_3320872_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|235906
NZ_CP015866.1\|WP_064728569.1\|3324075_3324528_+\|GPW/gp25-family-protein	unknown	unknown	gnl\|CDD\|377431
NZ_CP015866.1\|WP_079163559.1\|3307225_3308650_-\|hydrogenase-expression-protein	unknown	unknown	gnl\|CDD\|238092
NZ_CP015866.1\|WP_064728564.1\|3316262_3316781_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|237030
NZ_CP015866.1\|WP_064728568.1\|3322106_3324026_+\|VgrG-related-protein	unknown	unknown	gnl\|CDD\|226032
NZ_CP015866.1\|WP_064728562.1\|3314122_3315727_+\|phage-tail-protein	unknown	unknown	gnl\|CDD\|226028
NZ_CP015866.1\|WP_064728559.1\|3308723_3310148_-\|hydrolase	unknown	unknown	gnl\|CDD\|214791
NZ_CP015866.1\|WP_064728563.1\|3315816_3316263_+\|phage-tail-protein	unknown	unknown	gnl\|CDD\|274049
NZ_CP015866.1\|WP_064731828.1\|3326548_3327058_+\|phage-tail-protein	unknown	unknown	gnl\|CDD\|274050
NZ_CP015866.1\|WP_064728556.1\|3298102_3301663_-\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|197715
NZ_CP015866.1\|WP_064728554.1\|3295616_3297122_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|129794
NZ_CP015866.1\|WP_064728560.1\|3310238_3310889_-\|DUF4157-domain-containing-protein	unknown	unknown	gnl\|CDD\|379338
NZ_CP015866.1\|WP_162494712.1\|3303690_3305658_+\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|223540
NZ_CP015866.1\|WP_064728566.1\|3320934_3321357_+\|phage-tail-protein	unknown	unknown	gnl\|CDD\|377718
NZ_CP015866.1\|WP_064728567.1\|3321387_3322107_+\|LysM-peptidoglycan-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|212030
NZ_CP015866.1\|WP_064728557.1\|3302872_3303550_+\|DUF4255-domain-containing-protein	unknown	unknown	gnl\|CDD\|379449
NZ_CP015866.1\|WP_079163557.1\|3302017_3302701_+\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|225107

Protein	Function_ID	Function_description	E-value
NZ_CP015866.1\|WP_079163558.1\|3305677_3307126_-\|hydrogenase-expression-protein	gnl\|CDD\|238092	cd00161, RICIN, Ricin-type beta-trefoil; Carbohydrate-binding domain formed from presumed gene triplication. The domain is found in a variety of molecules serving diverse functions such as enzymatic activity, inhibitory toxicity and signal transduction. Highly specific ligand binding occurs on exposed surfaces of the compact domain sturcture.	4.62608e-18
NZ_CP015866.1\|WP_064728555.1\|3297201_3298083_+\|hydroxyurea-phosphotransferase	gnl\|CDD\|309685	pfam04655, APH_6_hur, Aminoglycoside/hydroxyurea antibiotic resistance kinase. The aminoglycoside phosphotransferases achieve inactivation of their antibiotic substrates by phosphorylation utilising ATP. Likewise hydroxyurea is inactivated by phosphorylation of the hydroxy group in the hydroxylamine moiety.	1.48095e-55
NZ_CP015866.1\|WP_064728570.1\|3324527_3326486_+\|putative-baseplate-assembly-protein	gnl\|CDD\|274051	TIGR02243, hypothetical_protein_SCD8A.17c, putative baseplate assembly protein. This family consists of a large, conserved hypothetical protein in phage tail-like regions of at least six bacterial genomes: Gloeobacter violaceus PCC 7421, Geobacter sulfurreducens PCA, Streptomyces coelicolor A3(2), Streptomyces avermitilis MA-4680, Mesorhizobium loti, and Myxococcus xanthus. The C-terminal region is identified by the broader model pfam04865 as related to baseplate protein J from phage P2, but that relationship is not observed directly. [Mobile and extrachromosomal element functions, Prophage functions].	0
NZ_CP015866.1\|WP_079163830.1\|3319867_3320872_+\|hypothetical-protein	gnl\|CDD\|235906	PRK07003, PRK07003, DNA polymerase III subunit gamma/tau.	5.65745e-11
NZ_CP015866.1\|WP_064728569.1\|3324075_3324528_+\|GPW/gp25-family-protein	gnl\|CDD\|377431	pfam04965, GPW_gp25, Gene 25-like lysozyme. This family includes the phage protein Gene 25 from T4 which is a structural component of the outer wedge of the baseplate that has acidic lysozyme activity. The family also includes relatives from bacteria that are also presumably lysozymes.	2.4787e-31
NZ_CP015866.1\|WP_079163559.1\|3307225_3308650_-\|hydrogenase-expression-protein	gnl\|CDD\|238092	cd00161, RICIN, Ricin-type beta-trefoil; Carbohydrate-binding domain formed from presumed gene triplication. The domain is found in a variety of molecules serving diverse functions such as enzymatic activity, inhibitory toxicity and signal transduction. Highly specific ligand binding occurs on exposed surfaces of the compact domain sturcture.	3.32296e-23
NZ_CP015866.1\|WP_064728564.1\|3316262_3316781_+\|hypothetical-protein	gnl\|CDD\|237030	PRK12270, kgd, multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit.	0.00326312
NZ_CP015866.1\|WP_064728568.1\|3322106_3324026_+\|VgrG-related-protein	gnl\|CDD\|226032	COG3501, VgrG, Uncharacterized protein conserved in bacteria [Function unknown].	1.72737e-16
NZ_CP015866.1\|WP_064728562.1\|3314122_3315727_+\|phage-tail-protein	gnl\|CDD\|226028	COG3497, COG3497, Phage tail sheath protein FI [General function prediction only].	8.86759e-58
NZ_CP015866.1\|WP_064728559.1\|3308723_3310148_-\|hydrolase	gnl\|CDD\|214791	smart00728, ChW, Clostridial hydrophobic, with a conserved W residue, domain.	1.01735e-09
NZ_CP015866.1\|WP_064728563.1\|3315816_3316263_+\|phage-tail-protein	gnl\|CDD\|274049	TIGR02241, hypothetical_protein_SCD8A.25c, conserved hypothetical phage tail region protein. This family consists of uncharacterized proteins. All members so far represent bacterial genes found in apparent phage or otherwisely laterally transferred regions of the chromosome. Tentatively identified neighboring proteins tend to be phage tail region proteins. In some species, including Photorhabdus luminescens TTO1, several members of this family may be encoded near each other.	4.24224e-43
NZ_CP015866.1\|WP_064731828.1\|3326548_3327058_+\|phage-tail-protein	gnl\|CDD\|274050	TIGR02242, putative_secreted_protein, phage tail protein domain. This model describes a region of sequence similarity shared by a number of uncharacterized proteins in bacterial genomes, including Geobacter sulfurreducens PCA, Mesorhizobium loti, Streptomyces coelicolor A3(2), Gloeobacter violaceus PCC 7421, and Myxococcus xanthus. In all cases, the genomic region resembles a phage tail region, based on tentative identifications of neighboring genes. A region of this domain resembles a region of TIGR01634, another phage tail protein model. [Mobile and extrachromosomal element functions, Prophage functions].	1.36245e-42
NZ_CP015866.1\|WP_064728556.1\|3298102_3301663_-\|AAA-family-ATPase	gnl\|CDD\|197715	smart00421, HTH_LUXR, helix_turn_helix, Lux Regulon. lux regulon (activates the bioluminescence operon.	1.34612e-14
NZ_CP015866.1\|WP_064728554.1\|3295616_3297122_+\|MFS-transporter	gnl\|CDD\|129794	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. [Cellular processes, Toxin production and resistance, Transport and binding proteins, Other].	1.25052e-66
NZ_CP015866.1\|WP_064728560.1\|3310238_3310889_-\|DUF4157-domain-containing-protein	gnl\|CDD\|379338	pfam13699, DUF4157, Domain of unknown function (DUF4157). This presumed domain is functionally uncharacterized. This domain family is found in bacteria, archaea and eukaryotes, and is approximately 80 amino acids in length. This domain contains an HEXXH motif that is characteristic of many families of metallopeptidases. However, no peptidase activity has been shown for this domain.	4.71747e-14
NZ_CP015866.1\|WP_162494712.1\|3303690_3305658_+\|AAA-family-ATPase	gnl\|CDD\|223540	COG0464, SpoVK, ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones].	2.50379e-27
NZ_CP015866.1\|WP_064728566.1\|3320934_3321357_+\|phage-tail-protein	gnl\|CDD\|377718	pfam06841, Phage_T4_gp19, T4-like virus tail tube protein gp19. This family consists of several tail tube protein gp19 sequences from the T4-like viruses. This family also contains bacterial members which suggest lateral transfer of genes.	4.42784e-40
NZ_CP015866.1\|WP_064728567.1\|3321387_3322107_+\|LysM-peptidoglycan-binding-domain-containing-protein	gnl\|CDD\|212030	cd00118, LysM, Lysin Motif is a small domain involved in binding peptidoglycan. LysM, a small globular domain with approximately 40 amino acids, is a widespread protein module involved in binding peptidoglycan in bacteria and chitin in eukaryotes. The domain was originally identified in enzymes that degrade bacterial cell walls, but proteins involved in many other biological functions also contain this domain. It has been reported that the LysM domain functions as a signal for specific plant-bacteria recognition in bacterial pathogenesis. Many of these enzymes are modular and are composed of catalytic units linked to one or several repeats of LysM domains. LysM domains are found in bacteria and eukaryotes.	6.72252e-06
NZ_CP015866.1\|WP_064728557.1\|3302872_3303550_+\|DUF4255-domain-containing-protein	gnl\|CDD\|379449	pfam14065, DUF4255, Protein of unknown function (DUF4255). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria and archaea. Proteins in this family are typically between 190 and 320 amino acids in length.	2.17358e-47
NZ_CP015866.1\|WP_079163557.1\|3302017_3302701_+\|response-regulator-transcription-factor	gnl\|CDD\|225107	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription].	1.22514e-19

>NZ_CP015866.1|WP_064728560.1|3310238_3310889_-|DUF4157-domain-containing-protein
MRAHENQADLQAGEKNPARRATPLGATADRMLALQHQAGNAAVSQVVQRRFDPEQHQHGAGCGHGGYEDSSPEGQVELLNAAKSTPGSPLSGSLRNEAESFYQTKFPTARIHDNPTVHRATAAMGAEAMTIGTDIFLGAGASGRKDLIGHELDHVKNNQEGKTETGVDNGAGQAVTNPNQDSEVTAGINGNAFGAGAKVAPSIAQRAAKDRPDDEA
>NZ_CP015866.1|WP_064728559.1|3308723_3310148_-|hydrolase
MSLWTSLEPASATVDPGSSTRVRLRVRNTGDVVDEYRFEPVGDVSPWVSVEPQTLRLYPGTTGTVELTFAPPRTSDAVAGPNPYAVRITPTEHPDAVTVPEGNLTITAFTEVRAELVPPTVKGRFRGRPRLAVDNVGNTKVTASVAGADTGDHLSYEIRPGNVQIEPGRAAFVETTLKPRQVIWFGSKEERPYTLSVKRSGVDPTEVEGTYVQRGFLPRWLATFFGIFLALALAFVMIWIAYKPQVSSKATEQTEQAGAALAPSPSAAPETLPSTAPSAPAESPAAQPAAPEPKDDGAGGGGGGGGGEPKPPTKKPKPVVRTAATAVKELAARSDGRHICYRAYVADKGWQQPVCDGAEAGTVGKNLPIKVLNIAVSGTKGVSGNGAHVVEGWLTGDKWESEGDGVDMYLGSSKEAVSPLEGFTLKTTEGIVCPNTHVKDKGWQKQGCTEAGNWRYFGSPMDQRLQLEAVRITV
>NZ_CP015866.1|WP_079163559.1|3307225_3308650_-|hydrogenase-expression-protein
MSLWTSLEPASATVDPGSSTRVRLRVRNTGDVVDEYRFEPVGDVSPWTTVEPQTLRLYPGTTGTVELTFAPPRTSDAVAGPNPYAVRITPTEHPDAVTVPEGNLTITAFTEVRAELVPPTVKGRFRGRPRLAVDNVGNTKVTASVAGADTGDHLSYEIRPGNVQIEPGRAAFVETTLKPRQVIWFGSKEERPYTLSVKRSGVDPTEVEGTYVQRGFLPRWLATFFGIFLALALAFVMIWIAYKPQVSSKATEQTEEAGAALAPSPSATPETLPSAAESPDAEAEPQVSEEPENDGGGGGGGGGGDDKPAPPKPKPVVPAMNVMLRNATTKMCADIPGREKGQINGIVQQANCHEEGDNQYWNLEVKYPKGGPGGVPLFQIRNVADKFCMDLGEYDGRPVGTGIGEFHCDGTLADNQLWWIQKQESGDYWIRNYASNHKCLNVKGQNGGTETPLNISDCTNTDDQEWKIIHPNKD
>NZ_CP015866.1|WP_079163558.1|3305677_3307126_-|hydrogenase-expression-protein
MSLWTSLEPASATVDPGSSTRVRLRVRNTGDVVDEYRFEPVGDVSPWVSVEPQTLRLYPGTTGTVELTFAPPRTSDAVAGPNPYAVRITPTEHPDAVTVPEGNLTITAFTEVRAELVPPTVKGRFRGRPRLAVDNVGNTKVTASVAGADTGDHLSYEIRPGNVQIEPGRAAFVETTLKPRQVIWFGSKEERPYTLSVKRSGVDPTEVEGTYVQRGFLPRWLATFFGIFLALALAFVMIWIAYKPQVSSKATEQTEEAGAALAPSPSATPEILPSTAPSVPAEEPAPQPSTEAAVDKDAGGGGGDGGGEPKPKPKPKPKPKPLLPAENVMLYNTTTKMCAELVGREKGKPDDPVQQSMCIPGDEDNQMWDLEVRYAKGGPEGVQLFQIRNTKDKLCMDLPWYGGAAVGTPVTEYHCDGTKADNQLWWIDKQESGDYWIRNYASNHKCLNVEGNGTGGLDAKLNISDCTNIDDQEWRIVHPKKE
>NZ_CP015866.1|WP_162494712.1|3303690_3305658_+|AAA-family-ATPase
MLSARLAGLRGPVTALIDRRAGGDPTADDPLRGLYLSDEAVQHLLDTWPAGDAAGPAEPLPLGDPADPADRLARLAGRTRLTELDTAVLLIALAPDVDRTFEPLYGYLNNDVSRRRATVSLALELCGVPAHLAAARARFHASAPLRSLGLLEVEEPERPFLTRSLRVPDRLVGHLLGDDSPDAALLGLLPAMPEPLPSPARAADVFADRLAARLRQGPLTAYLREPREGDGLAALASVLDAAKTEALRFAGPEEHVPELLREARLTGRAVVVPGLPEKPGPMVRALTAATDVTVLMCDPRPYDPQWSRADPLVLDAPGRRAGGAAAWRAALGPDADGFDLATAVAPYRLGGDRIQRAALTARALAAFDGLPLNADHVRLAARRQSASGLESHARRIRPDVDWSDLVLPDKPLVQLRELALRARHRDRVLGDWRLSAGGGRGRGVLGLFAGESGTGKTLSAEVVAADLGLDLYVVQLSSVVDKYVGETEKNLERIFTEADRTDAVLLFDEADAVFGKRSEVKDAHDKYANMESAYLLQRLESFDGIALLTTNLRANIDEAFTRRLDLVVDFPFPDPEQRLALWRHSLSRVPSADGIDPEPLAREFELAGGSIRSAVVTAAYLAAGRDDMVTADDLLEGARREYRKAGRLVPGEGGW
>NZ_CP015866.1|WP_064728557.1|3302872_3303550_+|DUF4255-domain-containing-protein
MIHEVDEVLKTLLKGGAMTGSGIDVAFEAPTRDWAARRNAPVINTYLYDIREDVNRRQRGQMAVRDEDAIIVKRRQPPRWFRLSYLVTAWTKTPQDEHRLLSAVMATLLPRELLPPSELPGSLGALGLSVPLTVAGIQTEARSLAEIWSALGGELKPSLDLVVTAPFPAFPEYDAGPPVTEGATVRVGGIEGDPPMAEGRSHRPHQVAAARAARRGPADRGTGRP
>NZ_CP015866.1|WP_079163557.1|3302017_3302701_+|response-regulator-transcription-factor
MLNSPRTTTTSGRASGGAVGVTDRRVPVAVTAPDPISREGAISQLRRHPEIDLRDDSGPGTVALLIEDALDEAALTRLRRLVRSEGARAVLVVGAIRESELLDVVECGVGAIVWRHEATAHRLVQAVLAASRGDGDLPADLLGRLISQVGTLHRGAAGRPGAPSLGLAPREVDVLRLVAEGLDTGEIAGKLSYSERTVKNVMHGLTTRLHLRNRAHAVAYALREGYI
>NZ_CP015866.1|WP_064728556.1|3298102_3301663_-|AAA-family-ATPase
MTGPLRERDDADALLAAEIERARAGFGRLVLLRGASGTGRTAVLETAVRHAADRGLRVLRVRCSPEDTAVPFSTVLHLLGPVPEFTDVAPGDDDRGSAARLWRLLRSYAAEGPLLVAVDDVHLADEPSRRWLTEAARRVDRLPLLLVATERSQYDVEPRPAGLTQALSPSLVRTHTLAPLSDAAAAGLVRAAFPGASARWTAECVRAGAGSPLLLHALLDDLGGTRHPDGLPRVPEASAELYPGSYPAAVSWWLNSAGAATADVARSLAALEQAWPPSAAPRRAVPRHALDHPTAPAPTGHVEPEHARPAEYADGGRHLRPVRPEPRRAACADPGPTLSAHAWPGTDAAGPGEAGVRGVGGGWPGSGAPGAEPGGPGAGGGWSGAGGPGHEPGSPGTVGGVRSHGVGGAWPEVGGPGTASGSPGGAKSRGASGGWSEAGGPGAGSGVPGAGAGAGDGDGGPVRDGFRGPGGAVVACPAHGPYARLGHTAPGAEDEPPYAPHVREAPYPGHPEAARHGRAEPRRTDGRWHTPSPPEGPVGAAGAGDPVDVLAEAAGADPARVAGWLAAMTRLGLLRPDAGGRPRYAHPLLRDAVLTGWPRPRREAVHRAAAEAMLRRGDRVEAVARHLLRTPAVGEPWALRVLRDAVTVAVHDGRPDDAVAYLRRALDERLTDDLRQRLLTELGSLEYASADTPAAIARLAEAQHLPAEPRNRVRTAVALGTALAGRGEIRTAMEVLRRTEGRLSGHPGLARTVQTATAMLSDEDLATRQEVYRWLSETGRHSPELVGTAGQALLVRYAATAALISAEEAMTRVRDLLAQPTDPLAEPFLLGTAAAVAQWADELDEADRLVERGLAGQHPALLHPMQHAMLNTRADIAAARGDLTRLLATDPGRATGPTNRDALALTALVHTGRVDEALRYADRFDLREVPENWELNRYLYARGVLRAATGDPAGALHDFLECGRRQSAREVISPVVTPWRTAVAECRLALGGGREALALATEELRLARVWNTPRTVGRALSVLGTATGGRRGLELAEEAVRTLRDAPADTDMELIPALLAQGRQLIAAGERGRARTRLREAAELAERKGALRWLTLAGQALREGGARGSVSSHTGAGSLTGSERRIAELAADGRTNTEIADLLHLARRTVETHLTSTYRKLRIRRRTELPAALDRERGRERPRAQG
>NZ_CP015866.1|WP_064728555.1|3297201_3298083_+|hydroxyurea-phosphotransferase
MIDVPDGLAAAQAKYNGEAGRAFIAALPGLAASFIERWELRPDGPSMHGWAALVLPVLRPDGTPAVLKLQIADEESEGEPVALRVWDGDGAVRLLDHDPATGTMLLERLDADRMLSRVEDSRAAVLVIARLLAHLTATPAPPGMRRLGDIAREMLARTPGTLPGIPDPADRRLVADCAAALREVAGEPGDRLLHWDLHYENVLASGRAPWLAIDPKPLAGDPGFDLLPALDNRYDPAETRWRFDAMTDVLGLDRERARAWSLARVLQNCLWNVEDGDPLETEQLEIGRLLRDL
>NZ_CP015866.1|WP_064728554.1|3295616_3297122_+|MFS-transporter
MSGTSSGEPAAPQEADPHRWWGLVVIALAQLMVVLDATIVNIALPSAQRDLGMSDGNRQWVITAYTLAFGGLLLLGGRIADLVGRKRTFVIGLVGFAAASAIGGAAVNPAMLFGARALQGVFAAVLAPSALSLLSTTFSDPKERGKAFGIYGTLAAGGAAAGFIVGGVLTEYLNWRWCLYVNVPFAITAVIGAYALLRDRPGTGGGARLDVRGAVLGCGGLVSLVYGFSEAQPRGWVDPLVLSLFALAVVLLAAFVWWQTRAPMPLLPLHIIRDRNRAGCMVTMMLAVIGMFGMFLFMTYYLQVILAYSPLRTGLAFLPMTAAILTGSTQISARLLPHVGPRMLMVPGMLLASGGMVILTQMTVDSAYVSEILPALLLIGLGMGLTFMPVFSTATAGVAPRDSGVTSATVNTSQQVGGSIGTALLNTIATSAGASYIASHLTDPAQRGRIVREGIVHGYTVAIWVAAGIMLLAALVAGLMVTAKAPKHGTTADRPVAEPVG
>NZ_CP015866.1|WP_064728562.1|3314122_3315727_+|phage-tail-protein
MPSYLSPGVYVEEVASGSRPIEGVGTSVAAFVGLAPTGPLNEPTLVTNWTQYVAAFGDFTGGYYLAHSVYGFFNNGGSAAYVVRVGGSPEDAAGDATDGSAAPAAVTGGAAKPALPAAEPKQLGTFAVTATGEGQNGPLTVEVADPEGEGPAERFKLIVKDGDKPVETFDVSAKKGNRSYVVTQVKERSKLITVTEAAPSAQLVRPENQTLTLPAPPSAAPAVPAGRDETAHPGPAQYLGDSSDRTGFGGLEAIDEISMVAVPDLMAAYQRGAIDLEAVKAVQLGLIAHCELMGDRVAIIDPPPSQNARQIRVWRQETAGYDSKYAALYYPWIKSFDPATGQSRLVPPSGHVAGIWARNDSERGVHKAPANEVVRGAVDLELQITRGEQDLLNPIGVNCIRSFPGRGIRVWGARTLSSDPAWRYLNIRRYFNYLEESILIGTQWVVFEPNDHNLWARIRRNVSAFLVNEWRSGALFGQSPTEAYYVKCDEETNPPESVDLGRVVCEIGIAPVKPAEFVIFRLAQFSSGSGELEE
>NZ_CP015866.1|WP_064728563.1|3315816_3316263_+|phage-tail-protein
MSLNPGDSLTSHNFGLQIDGVMVEYLAEVSGLTLEQDVIKYPQNNGATGKNEIALLPGTQKDGQCTVVRGMTQSASFTQWINDSINGRMATARKNASIIMMDFEDNPVKRYNLRNAWCSKIDTSTVKAGEASALTETVTIVFEELVIE
>NZ_CP015866.1|WP_064728564.1|3316262_3316781_+|hypothetical-protein
MRRTPAKAPAAAQTAAAGADFPRSAPAAAPAEASAGLPAAPPVEAVPRQQLRTEFPFELPRGYVDESGTVHRDGVMRLSTARDELIPLRDVRVQENPAYLSVVLLGRVITRLGTLAMVHDGVVENMFASDLAFLQDFYRQINAEGHTRAAVECPHCAEPFEVELGGSRLGES
>NZ_CP015866.1|WP_079163830.1|3319867_3320872_+|hypothetical-protein
MQRAAAPPRRAGLGAPTSSGPVDAVRRTPPPAARQTPASAPAGRPAHRAPAGAPFPAPTEAGPVPTVQRAAATPPSGAGTTAPAGPTPLPVSSPAFPPPATAAGAFAPAAAVPPSAPAGAPPAAPFAPPARAARPAPSGGPANPTVQRAPARTAVPLRRPAAPGTTATAAPLPVAPLAPPPPAAPHPPLPVSTQPAPARPAETTTTTSAGAPPVQRAFGLGRARGAISSLASHAAAAVADTFPDRRSSSSPHRPAGHQPPSDPPPPYSEAAAPAEGGDAPPAYTAIPEGGFDPRQLTDFQLDELVHRIIGRVTRLVRTELRMDRERIGRLRDPR
>NZ_CP015866.1|WP_064728566.1|3320934_3321357_+|phage-tail-protein
MSRQDPGSSIWFSLAIDGESLGYFNGCEGLSTQVEVEQRQEGGNNGFVWQLPTRVTFSNIRLTRPLTPDTAKVAKWISSVQTGVKRPTAQISALRADGSLVARWGLIDVLPVSWQGPSLDPGNLSVATEVLEIAHHGFTD
>NZ_CP015866.1|WP_064728567.1|3321387_3322107_+|LysM-peptidoglycan-binding-domain-containing-protein
MATSKGAGKSLVRANLAIHEPPTGTTTTPGALIRTFAFEFNPAQLAISQRTQWKATPTAAVREAAKPQFMGAEPREMTLEIFLDSSMKPDGNTVMKKVESLLLCCEVTAKSLSAKQPSPPWVVFEWGSFSTARFTAYVSSIETQYTLFGTTGIPIRATCQVALVEIPGPTLGQNPTSGALTAQRVHRVVAGDSLQSLAWSEYGSANAWRVIAEANGIDDPSHLPTGTELMLPAAEEVPH
>NZ_CP015866.1|WP_064728568.1|3322106_3324026_+|VgrG-related-protein
MVRPAFSSVVEVKIGGAKLPDDIAPMLTDGWVDQGVGVPAAFRITFRDPDHLVLGKLGVQFGTKVVITPIADGQGKGNPLLTGEVTGMEADYDGTGSFTVIRGYDYGHRLMRQRRVAAYRNQKASDIARKLVAMDGVSIGRIQATKGTYAFISQSNVTDWDFLSRLADENNMVMYLDAKGKFRFVTPKPSAGAPSPSTDGDKSTFVLQARHDILRLRAAVTAADQIGKVESRGWNVTTKKKITEIAPATTDPGISIGSTPGTAAGKFKAGKLVETANPYDKQDEVQHAAKALAADVTSSFAELEVAAYGHPDLRPGVPVALSDVGKPFEGKYTVTSVRHHFGDGVPYESWITVSGRQWRSLYGLASGGSGGTDPASAARLPSVANAIVTDVMDPLKQGRVKLQFPWLDDTYVSDWARSVQMGGKGGGGVFPMDVGDEVLVGFDRGALDHPFVIGGLYNGRDLPTKVKDVPLHDGLKKKAVRHTLSDRTGNRVDLLSQQTGARKQGVRIASGNDKLTINLDRTKTEITVDSKGSVSITGSRSVSVEAGMDLTLEGRRSVTVKSGGPLLLQGRGLVNLKSTAGTVNVSAMGALLMNATGAMTLTATGLVSVTSVANVNIKAIKVDLMGAVFVNTIKYPLPA
>NZ_CP015866.1|WP_064728569.1|3324075_3324528_+|GPW/gp25-family-protein
MAEQFVGSGWSFPLRIGPTGGIALVSGEQEVEEAMRLILATAPGERPMRPEFGCAIHDLVFSPVNEQTAGRIQHEVHVTLDRWEPRIEVHEVDVSTGEDQNVLYIDVRYSIRGTNNPRSLVFPFYVIPSHDEPDLPAGPAGLPGSPESDR
>NZ_CP015866.1|WP_064728570.1|3324527_3326486_+|putative-baseplate-assembly-protein
MPLPSPNLDDRRFQQFVDDAKRYIQQRAPEWTDHNVSDPGITLVETLAHMADQIVYRLNRVPEKNHLAFLDLVGITLFPPSAARTDVTFWLSAPQEDSILVPVGAEVATLRTERDEAVVFATERDLTIVPCTLDRLVVQHQGEAVTDRTTDLAEGKDLMCFAEAPRPGDCMLIGLTSAVPHCALALELDSRVDGVGVDPRQPPLVWEAWTEDGWQPCEVDRDGTGGLNRPGDIVLHIPGGHVLSRNGGHEAGWVRCRVTEPLPGQPFYTTSPTVRSAEAYTIGGTTGTVHAETVYDEALGESSGLPGQRVRLEHFPVVADDPSVLLQTAADDGWQEWQVVPHFSASHPEDHHITLDAATGEIAFGPAVREADGTLRQYGAVAPKGAVIRARRYRTGGGRSGNVARGAVQVLRTSIPYVSEVVNREAARGGVDGETVEEAKLRAPITLRAQERAVTLRDYEELARRAAPETARITCLEGEENEYGAHAVRVLVVPQAVPDPGGRLRFEQLVPGDALLGRITRHLDERRLIGTRLAVGPPYYQGVTVVATVHAFRGVDTDRVRRQAHDALYRHLDPLTGGADGKGWPFGRPVQTGEVFAVLQRVPGVELVDEVVLHPADPLTGKRGDPTDRIDLEAPALVFSFDHRVRVIGDGA
>NZ_CP015866.1|WP_064731828.1|3326548_3327058_+|phage-tail-protein
MLPAVFADDDLALRFVGGLDDVLAPILNVLDCLDTYFDPALTPADFARWLGTWVGAETDGTEAEPMLRAAVAAASRLHRVRGTRQGLSEAVRLAFGVEPDITESGGADWNARPLGPFPGTPRPRLHVTLRLPEPRPGDIHRLDALVAAARPAHMPYTVEVTAAERTPER

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Crispr_ID: NZ_CP015866_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP015866_5

4018686-4018786

Orphan

Consensus_repeat	Method
CGCGCGGGTCCGCCGCGTACGTC	CRISPRCasFinder

2 spacers

csa3

The CRISPR arrays of NZ_CP015866_5

>merge|NZ_CP015866|5|4018686-4018786|CRISPRCasFinder
GGTGAGGGTCCACCGCGTACGTCTAGCGCGCGGGTCCGCCGCGTACGTCCGCCGCGAGGGCCTGCCGCGTACCTCTGCCGCGCGGGTCCGCTGCGTACGTC

>NZ_CP015866|5|5|4018686-4018786|CRISPRCasFinder
GGTGAGGGTCCACCGCGTACGTC	TAGCGCGCGGGTCCGC
CGCGTACGTCCGCCGCGAGGGCC	TGCCGCGTACCTCTGC
CGCGCGGGTCCGCTGCGTACGTC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP015866.1\|WP_064729126.1\|4027287_4027797_+\|amino-acid-N-acetyltransferase	unknown	unknown	gnl\|CDD\|236132
NZ_CP015866.1\|WP_064729109.1\|4011482_4012013_-\|PH-domain-containing-protein	unknown	unknown	gnl\|CDD\|225937
NZ_CP015866.1\|WP_079163609.1\|4008819_4010118_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|236090
NZ_CP015866.1\|WP_064729110.1\|4012044_4013196_+\|NADH-quinone-oxidoreductase-subunit-D	unknown	unknown	gnl\|CDD\|223722
NZ_CP015866.1\|WP_064729119.1\|4021292_4022294_+\|pantoate--beta-alanine-ligase	unknown	unknown	gnl\|CDD\|185673
NZ_CP015866.1\|WP_064729113.1\|4015813_4016488_+\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|225107
NZ_CP015866.1\|WP_064729111.1\|4013160_4014249_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|224481
NZ_CP015866.1\|WP_064731885.1\|4010127_4011402_-\|PH-domain-containing-protein	unknown	unknown	gnl\|CDD\|225962
NZ_CP015866.1\|WP_064729118.1\|4020240_4021296_+\|DUF2520-domain-containing-protein	unknown	unknown	gnl\|CDD\|227782
NZ_CP015866.1\|WP_064729117.1\|4018817_4020071_-\|threonine-aldolase	unknown	unknown	gnl\|CDD\|224919
NZ_CP015866.1\|WP_064729112.1\|4014554_4015760_+\|sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|226951
NZ_CP015866.1\|WP_107420236.1\|4024020_4025010_+\|carboxylating-nicotinate-nucleotide-diphosphorylase	unknown	unknown	gnl\|CDD\|236125
NZ_CP015866.1\|WP_064729122.1\|4025014_4025812_+\|type-III-pantothenate-kinase	unknown	unknown	gnl\|CDD\|237347
NZ_CP015866.1\|WP_064729120.1\|4022290_4024024_+\|L-aspartate-oxidase	unknown	unknown	gnl\|CDD\|236102
NZ_CP015866.1\|WP_064729123.1\|4025964_4026552_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|236138
NZ_CP015866.1\|WP_064729124.1\|4026575_4026755_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP015866.1\|WP_064729107.1\|4007561_4008692_+\|esterase	unknown	unknown	gnl\|CDD\|366286
NZ_CP015866.1\|WP_064729115.1\|4017201_4018308_-\|helix-turn-helix-transcriptional-regulator	csa3	COG0640_csa3_CAS-I-A	gnl\|CDD\|197713
NZ_CP015866.1\|WP_079163610.1\|4026879_4027278_+\|BlaI/MecI/CopY-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|367747
NZ_CP015866.1\|WP_064729114.1\|4016528_4017170_+\|AAA-family-ATPase	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP015866.1\|WP_064729126.1\|4027287_4027797_+\|amino-acid-N-acetyltransferase	gnl\|CDD\|236132	PRK07922, PRK07922, amino-acid N-acetyltransferase.	1.89611e-111
NZ_CP015866.1\|WP_064729109.1\|4011482_4012013_-\|PH-domain-containing-protein	gnl\|CDD\|225937	COG3402, COG3402, Uncharacterized conserved protein [Function unknown].	3.66941e-26
NZ_CP015866.1\|WP_079163609.1\|4008819_4010118_+\|hypothetical-protein	gnl\|CDD\|236090	PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated.	3.86861e-05
NZ_CP015866.1\|WP_064729110.1\|4012044_4013196_+\|NADH-quinone-oxidoreductase-subunit-D	gnl\|CDD\|223722	COG0649, NuoD, NADH:ubiquinone oxidoreductase 49 kD subunit 7 [Energy production and conversion].	2.18129e-144
NZ_CP015866.1\|WP_064729119.1\|4021292_4022294_+\|pantoate--beta-alanine-ligase	gnl\|CDD\|185673	cd00560, PanC, Pantoate-beta-alanine ligase. PanC Pantoate-beta-alanine ligase, also known as pantothenate synthase, catalyzes the formation of pantothenate from pantoate and alanine. PanC belongs to a large superfamily of nucleotidyltransferases that includes , ATP sulfurylase (ATPS), phosphopantetheine adenylyltransferase (PPAT), and the amino-acyl tRNA synthetases. The enzymes of this family are structurally similar and share a dinucleotide-binding domain.	6.56128e-129
NZ_CP015866.1\|WP_064729113.1\|4015813_4016488_+\|response-regulator-transcription-factor	gnl\|CDD\|225107	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription].	4.84674e-70
NZ_CP015866.1\|WP_064729111.1\|4013160_4014249_-\|hypothetical-protein	gnl\|CDD\|224481	COG1565, COG1565, Uncharacterized conserved protein [Function unknown].	6.14441e-31
NZ_CP015866.1\|WP_064731885.1\|4010127_4011402_-\|PH-domain-containing-protein	gnl\|CDD\|225962	COG3428, COG3428, Predicted membrane protein [Function unknown].	1.72805e-36
NZ_CP015866.1\|WP_064729118.1\|4020240_4021296_+\|DUF2520-domain-containing-protein	gnl\|CDD\|227782	COG5495, COG5495, Uncharacterized conserved protein [Function unknown].	2.16653e-52
NZ_CP015866.1\|WP_064729117.1\|4018817_4020071_-\|threonine-aldolase	gnl\|CDD\|224919	COG2008, GLY1, Threonine aldolase [Amino acid transport and metabolism].	2.60118e-38
NZ_CP015866.1\|WP_064729112.1\|4014554_4015760_+\|sensor-histidine-kinase	gnl\|CDD\|226951	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms].	3.12443e-46
NZ_CP015866.1\|WP_107420236.1\|4024020_4025010_+\|carboxylating-nicotinate-nucleotide-diphosphorylase	gnl\|CDD\|236125	PRK07896, PRK07896, carboxylating nicotinate-nucleotide diphosphorylase.	5.26316e-153
NZ_CP015866.1\|WP_064729122.1\|4025014_4025812_+\|type-III-pantothenate-kinase	gnl\|CDD\|237347	PRK13318, PRK13318, type III pantothenate kinase.	4.76548e-151
NZ_CP015866.1\|WP_064729120.1\|4022290_4024024_+\|L-aspartate-oxidase	gnl\|CDD\|236102	PRK07804, PRK07804, L-aspartate oxidase; Provisional.	0
NZ_CP015866.1\|WP_064729123.1\|4025964_4026552_+\|hypothetical-protein	gnl\|CDD\|236138	PRK07994, PRK07994, DNA polymerase III subunits gamma and tau; Validated.	0.0004849
NZ_CP015866.1\|WP_064729107.1\|4007561_4008692_+\|esterase	gnl\|CDD\|366286	pfam00756, Esterase, Putative esterase. This family contains Esterase D. However it is not clear if all members of the family have the same function. This family is related to the pfam00135 family.	3.43173e-09
NZ_CP015866.1\|WP_064729115.1\|4017201_4018308_-\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|197713	smart00418, HTH_ARSR, helix_turn_helix, Arsenical Resistance Operon Repressor.	1.85043e-15
NZ_CP015866.1\|WP_079163610.1\|4026879_4027278_+\|BlaI/MecI/CopY-family-transcriptional-regulator	gnl\|CDD\|367747	pfam03965, Penicillinase_R, Penicillinase repressor. The penicillinase repressor negatively regulates expression of the penicillinase gene. The N-terminal region of this protein is involved in operator recognition, while the C-terminal is responsible for dimerization of the protein.	6.53221e-23

>NZ_CP015866.1|WP_064729115.1|4017201_4018308_-|helix-turn-helix-transcriptional-regulator
MSVRIDIAGLRPERVAVVPSPLAELGMALHALSEPGHHPGLQGWATGVTARLDSHLADRMCEADFLWRTTFSDLFMPFAGVPGRSTLPGATLAEDLDLLDKLSDEQFVDAALEFTCALPYSTGGVSALADAQVRRRALDLAAARGPQQLRFSERLLVDPPRIRGWLRQFAHDCDEAFFAEAWSRLRHQLATDARHKTDLLRRRGLAEALAAVSPAVTLDEDAARITVDKLGDGRSATADGGLLLVPTSLGWPHLMVLHRHAWQPVLHYPVGSPELASPASVEQLTLRMTALSHPVRMRICRYLARSEYTTGELAQVHGMTAPEISRHLGVLKKAGLVTTRRRGRYVLHQLDVTVVARLGSDFLEGILR
>NZ_CP015866.1|WP_064729114.1|4016528_4017170_+|AAA-family-ATPase
MLLWINGPFGGGKSQTAHEIRRRLPGSVVCDPEHVGFGLHRTLPPELRDDFQDLASWRQGVVEVLDLALTRHDGVVIAPMTVTEPRYFAETVGRLGELGHDVRHFTLLAERETVLRRLRERGLGRLLHRAGYAVGKRPRPGRESWAEARLDHCLERLAEPEFAEHLWTDRTTVPRTADRIAVLAGLTLRPNDEGALRTRIRQAGVALRHVRTD
>NZ_CP015866.1|WP_064729113.1|4015813_4016488_+|response-regulator-transcription-factor
MAIRVMLVDDQVLLRTGFRMVLAAQPDMEVVAEAGDGVEALQVLRSTAVDVVLMDVRMPKLDGVETTARICVDPDAPKVLILTTFDLDEYAFSALKAGASGFMLKDVPPGELLAAIRSVHSGDAVVAPSTTRRLLDRFAPMLPATGQEPRHKELQRLTGREQEVMVLVAQGMSNGEIAARLVLSEATVKTHVGRILTKLNLRDRVQVVVLAYETGLVRAGGGQG
>NZ_CP015866.1|WP_064729112.1|4014554_4015760_+|sensor-histidine-kinase
MQRLYDFLRRHPTGVDSFWALVVLGITLVSVSGPGTSDEGTHLLALIIPFAVLLSVVIALRQRMPERMLLLAVAIGVGQLALDVSTMPSDFAFLVIVYTVAATGARWASRTALAVGLCAAPFAQLRWADDELGIGSNIAITVFQAVPFALAWVLGDSIRTRRAYFAQLEERAARLEKEREAQAKVAVAAERARIARELHDVVAHNVSVMVVQADGAAYVLDAAPDQAKKALETISSTGRQALAEMRRLLGVLRTGEHQEAGEYVPQPDVQQIEDLVEHCRTSGLPVDFKVEGTPRQLPSGVELTAYRIVQEALTNTRKHGGPNAGASVRLVYFDDGLGLLIEDDGKGAPHELYEEGGFDGQGHGLIGMRERIGMVGGTLDAGPRPGGGFRISALLPLKPAH
>NZ_CP015866.1|WP_064729111.1|4013160_4014249_-|hypothetical-protein
MTRGTTGAEVAPEAQEGWRGWREATQEALYGSGGFYRTAPEGPAGHFRTSVHASPLFAGAVARLLCRVDAALGRPDPLAFVDMAAGRGELVSGVLAALPAAVSARTRAYAVEVAGRPEGLDHRIEWRAEPPHGVTGLLFANEWLDNVPVDVAEVDAAGLARRVLVRGDGTERLGGPPTGAEAAWLARWWPLAGEEGLRAEIGLPRDAAWASAVSSLDAGLAVAADYGHTAAARPPFGTLTGFRAGRETRPVPDGSCDITAHVALDAVAAAHAERCAPGHTPPPALTRPQREVLRALGVTGARPPLALASSDPAAYVRALANASRAAELLAPGGLGDFGWLLQPVGAVDAAALLVDVADDEEQ
>NZ_CP015866.1|WP_064729110.1|4012044_4013196_+|NADH-quinone-oxidoreductase-subunit-D
MTPTTETMVGIGGAAESTDMVLNIGPQHPSTHGVLRLRLVLDGERITSAEPVIGYMHRGAEKLFEARDYRQIIVLANRHDWLSAFSNELGVVLAVERMLGMEVPTRAVWTRTLLAELNRVLNHLMFLGSYPLELGGITPVFYAFREREVLQNVMEEVSGGRMHYMFNRVGGLKEDLPAGWTTRARAAVAAVRSRMDVFDDLVLGNEIFRGRTRGVGALTPQAVHAYGVSGPIARASGVDFDLRRDEPYLAYGELQDTLRVVTRAEGDCLARFEVLLDQTHNALDLADACLDRLAELEPGPVNQRLPKVLKAPEGHTYAWTENPLGINGYYLVSKGEKTPYRLKLRSASFNNIQALTELLPGTLVADMVAILGSLFFVVGDIDK
>NZ_CP015866.1|WP_064729109.1|4011482_4012013_-|PH-domain-containing-protein
METGSPDDAGTAGATDAVVRAREEPVWTGLPPGLLRMRRLLLVVWLGLLALAAGLLPGLFLGPLWATLALPPLAVLGWGWAMLERNWRSWRYAERADDLLISRGVLWREETVVPYGRMQLVEVTSGPVERHFGLASVQLHTAAAATDATIPGLDPAEAERLRDRLTELGEARSAGL
>NZ_CP015866.1|WP_064731885.1|4010127_4011402_-|PH-domain-containing-protein
MHPVTPLRRAWAPVAVLVGWAVHDPDQAQRQLTRLTTTHLLIGLAVLIPAAGLYGFLTWWFTHYAVTDTELRIRTGLLFRRTAHIRLERIQAIDVTQPLLARVAGVAKLKLDVIGTGKKDELAFLGADEARALRAELLARAAGFAPETAHEVGEAPARQLLRVPPGVLAVSLLLTGATWGTLLAAVVVPTLLWLATHNLWTVLATALPLVGAAGASSAGRFVGEYDWTVAESQDGLRIDHGLLDRAHETVPPGRVQTVRIVEPLLWRRRRWVRVELDVAGSSNSVLLPVAPREIAEAVVARVLPGVSVPAAPDLSRPPRRAARCRPLWWRGYGLAVTDAVFAARYGLLRRTLALVPHAKVQSVRLAQGPWQRALRLADVRVDTGANKTVTARLRDADEAAGLLDGQAERSRTGRRDAPPDRWMA
>NZ_CP015866.1|WP_079163609.1|4008819_4010118_+|hypothetical-protein
MPRGRHRHSPPLHRLLPPSAIAGVSVVCALGPWVFSEITVLRVLAAAAAVTAVVGAVVMRHWDAQAGRRVADLTRARASDEWRYEERVAELESDLEESRDLRVKLEHRLRAKRTELAGLRNEHASLLRRYATAETERASALEGRRLLEIEAVPSAPALPAARPAPDREEAAADAVPAATDPAAESTGTVEKETAEKHAAEKDSAPAVFSPAGSQLFLRAGAALARFDGDAPKGPDGGNRDDGGDSADGDGDGGDDGGDGGGKDDGDGGGESTPAPEAAREHETRGQPEAADGHESAAASPAPRSDEPSAPPAQSTRRAEGHFTVPTAVAVVPASPARRPSVEGGFDFFGTKEPGDGEGADGSDASGTALESVQNEDLADVVGQEALALHKAEAEASFKPAGEESRGVGQVIDLTAHDETEQIDIQGLRSAVS
>NZ_CP015866.1|WP_064729107.1|4007561_4008692_+|esterase
MGLTSNKVLALAVLAGVLLFAGTVWLWPRLAHGGVRAVLGRVGLLFATQAALFAAVGLVANQSFGFYGSWADLFGRENGQGVVVDHASGATGGPLRVVGDRKVTGAGGGRPEASGRIDEVRVVGRTTRIATPAYVYLPPEYFQARHRGRTFPAAVVLTGYPGTAEALVDKLRYPRTALDLARAGRMRPMILVMLRPTLAPPRDTECVDVPGGPRTETFFAKDLPEAVGGHYRVSRGPGTWGVVGNSTGGYCALKLAVHHPDVFAAGAGLSAYYDAPNDPTTGDLFQGNEERKNHANLWWYLKNRPAPGTSLLVTSSRSGETNYADTLEFIERVKSRKPTRISSIILESGGHNFNTWRREIPATLEWLGGRLGGRTV
>NZ_CP015866.1|WP_064729117.1|4018817_4020071_-|threonine-aldolase
MTDTVHEQDSGATAGQAPSAEEGSPSAEEGFPSADGESPTAERNRRTRERRIAVHRTARRVLDRPGHLQTLRQRLALLDDVQDLHDLDGPVDMYGNGVVEALEERTAALLGLEAAVFFPTGTMAQQVALRCWAGRTGDPVVALHGLSHPEVHERNAFSRVSGLRPVRLTSEPRPPTAAEVRDFEEPFGTLMLELPLRDAGYVLPTWEELTEVVAAARERDAVVHFDGARLWETTTHFGRPLEEIAGLADSVYVSYYKSLGGFGGAALAGPRTLVEEARAWRHRYGGNLFQQFPTALSALAGLERALPRLPEQVAHARVVAAALREGFAAAGVPWARVTPEVPHTHQFRVWLPYDAEALGEAALRQGEETGVLLFSGPFDPAGPGISVAEVGVGAAGLEWTPDDVRASVAGFVAALED
>NZ_CP015866.1|WP_064729118.1|4020240_4021296_+|DUF2520-domain-containing-protein
MNTTPLPDPKDRPARLTVGVVGAGRVGPALAASLQLAGHRPVAVSGVSDASRRRAAALLPDVPLMAPAEVLQRSELVLLTVPDDALPGLVAGLAETGAVRPGQLLVHTSGRYGARVLDPALRAGALPLALHPAMTFTGTPVDVQRLAGCSFGVTAPEELRLAAEALVIEMGGEPEWIAEDRRPLYHAALALGANHLVTLVAQSMELLRTAGVAAPDRMLGPLLGAALDNALRSGDAALTGPVARGDAGTVAAHIEELREHAPQAVAGYVAMARATADRALAHGLLKAELAEDLLGVLAEGRPSGTGAGGSSGPGGGPAPGDPAGPHGPPGPTAPEDPTDPDDPRGPEGDDR
>NZ_CP015866.1|WP_064729119.1|4021292_4022294_+|pantoate--beta-alanine-ligase
MTAAPPVLLRTADELHARVRGGRRAVVMTMGALHEGHATLVRTARDLVGPDGEVVTTVFVNPLQFGAGEDLDRYPRTLDADVEIAGRAGADAVFAPSVDEVYPGGEPQVRVTAGPMGERLEGASRPGHFDGMLTVVAKLLHLTRPDLALYGQKDAQQLALIRRMVRDLNFGVEIIGAPTVREEDGLALSSRNRYLSAAERRTALALSQALFAGLDRLAAQEALRARAREVPATESRAEALSALGESRAAADAHAVATSAPGSATAVRAAARQVLDDAARATPPLEQDYLALVDPADFTEIDDDHTGEAILAVAARVGATRLIDNVTLTFGAAS
>NZ_CP015866.1|WP_064729120.1|4022290_4024024_+|L-aspartate-oxidase
MTSTGIRLHAPAPGWAVDADVVVVGSGVAGLTAALRCEAAGLRTVVVTKARLDDGSTRWAQGGIAAALGEGDTPAQHLDDTLVAGAGLCDEEAVRILVTEGPDAVRRLIETGAHFDESTEGGLALTREGGHHRRRIAHAGGDATGAEISRALVEAVRARGLRTVENALVLDLLTDAEGRTAGVTLHVMGEGQHDGVGAVHAPAVVLATGGMGQVFSATTNPSVSTGDGVALALRAGAEVSDLEFVQFHPTVLFLGPGAEGQQPLVSEAVRGEGAHLVDADGVRFMEGQHELAELAPRDIVAKGILRRMLERDAEHMYLDARHFGADMWESRFPTILAACRTHGIDPVTEPIPVAPAAHYASGGVRTDAAGRTTVPGLYACGEVACTGVHGANRLASNSLLEGLVYAERIAADIAASHADGGLHTRVPAPLPHPAHPAHPLLPPESRLAIQRIMTEGAGVLRSADSLDRAAERLHDLHTEAREALRDHGKTSEPGVDTWEATNLMCVARVLVAAASRREETRGCHWREDHPDRDDTAWGRHVVVRLNPDRSLAVHTTDTPEFPPTVRASRPTQRPQEQ
>NZ_CP015866.1|WP_107420236.1|4024020_4025010_+|carboxylating-nicotinate-nucleotide-diphosphorylase
MRAVNTPDLPLAPSGGCGDGCACGAETDEDAYLECGLDPALAALLLDSGLDPVEVEDIANLAIQEDLAGGVDVTTVATIPEDAVATADFTAREAGTVAGLRVAEAVLSVVCTDEFEVERHVEDGDRVEPGQKLLSVTTRTRDVLTAERSALNLLCRMSGIATATRAWADVLQGTKAAVRDTRKTTPGLRGLEKFAVRCGGGVNHRMSLSDAALVKDNHVVAAGGVAQAFEAVRERFPEVPIEVEVDTLHQLREVLDAGADLILLDNFTPSECEEAVALVAGRAALEASGRLTLANAKAYADTGVDYLAVGALTHSAPILDIGLDLRAAE
>NZ_CP015866.1|WP_064729122.1|4025014_4025812_+|type-III-pantothenate-kinase
MLLTIDVGNTHTVLGLFDGEDIVEHWRISTDPRRTADELAVLLQGLMGMHPLLGDELGDGIDGIAICATVPSVLHELREVTRRYYGDVPAVLVEPGVKTGVPILTDHPKEVGADRIINAVAAVELYGGPAIVVDFGTATTFDAVSARGEYIGGVIAPGIEISVEALGVKGAQLRKIEVARPRSVIGKNTVEAMQSGIVYGFAGQVDGVVNRMARELASDPEDVTVIATGGLAPMVLGESSVIDEHEPWLTLMGLRLVYERNVSRM
>NZ_CP015866.1|WP_064729123.1|4025964_4026552_+|hypothetical-protein
MAFGAQELCVLRRALAVALNPSPVSAEEAQDCLRLAESLDEAMRESARLRAFLVADLARYRAALPGTATGYLALLDEALGAGHRPHADDLAALGALRANPAAAALLARCAPHADPPPAVRTPVVRLPAARSHLQALPGGQQADKPPAPKPAQKPSPRPAPAPAAPKRPVPTPGEVFPRRKPAPPAPGSRHHLAAG
>NZ_CP015866.1|WP_064729124.1|4026575_4026755_+|hypothetical-protein
MDYVSALLPPAVMAVFFIGLIRVIVKTQGGANKAKEDAAVDAALARAEGARQQSPHPEG
>NZ_CP015866.1|WP_079163610.1|4026879_4027278_+|BlaI/MecI/CopY-family-transcriptional-regulator
MGELEDAVMTRVWKWNRPVTVREVLEDLQQERSIAYTTVMTVLDNLHQKGWVRRESEGRAYRYEAVSTRAAYAAALMNDAWSQSDNPAAALIAFFGMMSEEQRQALRDAIRIAQGPETPAPGPGSVPEAGER
>NZ_CP015866.1|WP_064729126.1|4027287_4027797_+|amino-acid-N-acetyltransferase
MPNALTVRRARTRDVPDVRRLLDAYVRDRILLDKAMVTLYESIQEFWVAERDDNAEVVGCGALHVMWEDLAEVRTLAVKPGLKGAGVGHQLLEKLLDTARWLGVRRVFCLTFEVDFFVKHGFVEIGETPVDTDVYAELLRSYDEGVAEFLGLERVKPNTLGNSRMLLHL

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP015866_4	4.2\|3313005\|34\|NZ_CP015866\|CRISPRCasFinder	3313005-3313038	34	NC_012586	Sinorhizobium fredii NGR234 plasmid pNGR234b, complete sequence	2414862-2414895	6	0.824
NZ_CP015866_4	4.2\|3313005\|34\|NZ_CP015866\|CRISPRCasFinder	3313005-3313038	34	NZ_CP029452	Sinorhizobium fredii CCBAU 25509 plasmid pSF25509b, complete sequence	16361-16394	6	0.824
NZ_CP015866_4	4.2\|3313005\|34\|NZ_CP015866\|CRISPRCasFinder	3313005-3313038	34	NZ_CP023071	Sinorhizobium fredii CCBAU 83666 plasmid pSF83666b, complete sequence	16363-16396	6	0.824
NZ_CP015866_4	4.2\|3313005\|34\|NZ_CP015866\|CRISPRCasFinder	3313005-3313038	34	NC_011216	Burkholderia phage KS10, complete genome	14804-14837	8	0.765
NZ_CP015866_4	4.2\|3313005\|34\|NZ_CP015866\|CRISPRCasFinder	3313005-3313038	34	NC_015583	Novosphingobium sp. PP1Y plasmid Mpl, complete sequence	691140-691173	9	0.735
NZ_CP015866_4	4.2\|3313005\|34\|NZ_CP015866\|CRISPRCasFinder	3313005-3313038	34	NZ_CP013109	Sinorhizobium americanum strain CFNEI 73 plasmid B, complete sequence	499724-499757	9	0.735
NZ_CP015866_4	4.2\|3313005\|34\|NZ_CP015866\|CRISPRCasFinder	3313005-3313038	34	NZ_CP013053	Sinorhizobium americanum CCGM7 plasmid B, complete sequence	460304-460337	9	0.735

1. spacer 4.2|3313005|34|NZ_CP015866|CRISPRCasFinder matches to NC_012586 (Sinorhizobium fredii NGR234 plasmid pNGR234b, complete sequence) position: , mismatch: 6, identity: 0.824

tgcg-cctggtcgtcggccgcggacctgcgctgcg-	CRISPR spacer
-gcgtcctggtcgtcggcggcggaccggc-cggcat	Protospacer
 *** ************* ******* ** * **.

2. spacer 4.2|3313005|34|NZ_CP015866|CRISPRCasFinder matches to NZ_CP029452 (Sinorhizobium fredii CCBAU 25509 plasmid pSF25509b, complete sequence) position: , mismatch: 6, identity: 0.824

tgcg-cctggtcgtcggccgcggacctgcgctgcg-	CRISPR spacer
-gcgtcctggtcgtcggcggcggaccggc-cggcat	Protospacer
 *** ************* ******* ** * **.

3. spacer 4.2|3313005|34|NZ_CP015866|CRISPRCasFinder matches to NZ_CP023071 (Sinorhizobium fredii CCBAU 83666 plasmid pSF83666b, complete sequence) position: , mismatch: 6, identity: 0.824

tgcg-cctggtcgtcggccgcggacctgcgctgcg-	CRISPR spacer
-gcgtcctggtcgtcggcggcggaccggc-cggcat	Protospacer
 *** ************* ******* ** * **.

4. spacer 4.2|3313005|34|NZ_CP015866|CRISPRCasFinder matches to NC_011216 (Burkholderia phage KS10, complete genome) position: , mismatch: 8, identity: 0.765

tgcgcctggt---cgtcggccgcggacctgcgctgcg	CRISPR spacer
---gcaagatcaacgtcggccgcgtacttgcgctgcg	Protospacer
   **  *.*   *********** **.*********

5. spacer 4.2|3313005|34|NZ_CP015866|CRISPRCasFinder matches to NC_015583 (Novosphingobium sp. PP1Y plasmid Mpl, complete sequence) position: , mismatch: 9, identity: 0.735

tgcgcctggtcgtcggccgcggacctgcgctgcg	CRISPR spacer
gggtgctggtcgtcggcggcggacctgcgggact	Protospacer
 *   ************ ***********  .*

6. spacer 4.2|3313005|34|NZ_CP015866|CRISPRCasFinder matches to NZ_CP013109 (Sinorhizobium americanum strain CFNEI 73 plasmid B, complete sequence) position: , mismatch: 9, identity: 0.735

tgcgcctggtcgtcggccgcggacctgcgctgcg----	CRISPR spacer
atctcctggtcgtcggcggcgggcctgc----cggagc	Protospacer
  * ************* ****.*****    **

7. spacer 4.2|3313005|34|NZ_CP015866|CRISPRCasFinder matches to NZ_CP013053 (Sinorhizobium americanum CCGM7 plasmid B, complete sequence) position: , mismatch: 9, identity: 0.735

tgcgcctggtcgtcggccgcggacctgcgctgcg----	CRISPR spacer
atctcctggtcgtcggcggcgggcctgc----cggagc	Protospacer
  * ************* ****.*****    **

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage