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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP014870 Pseudomonas silesiensis strain A3 chromosome, complete genome 17 crisprs DEDDh,DinG,PD-DExK,cas3,csa3 3 0 4 0

Results visualization

1. NZ_CP014870
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP014870_1 608189-608278 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP014870_2 1058038-1058137 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP014870_3 1737761-1737866 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP014870_4 1883975-1884602 Orphan NA
9 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP014870_5 1931238-1931364 Unclear NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP014870_6 2195050-2195144 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP014870_7 2721479-2721562 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP014870_8 2973890-2973980 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP014870_9 3078056-3078155 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP014870_10 3317926-3318049 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP014870_11 4105114-4105194 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP014870_12 4359145-4359237 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP014870_13 4436795-4436895 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP014870_14 4882833-4882948 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP014870_15 4884954-4885059 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP014870_16 5191785-5191857 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP014870_17 5362331-5362419 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
NZ_CP014870_4 4.8|1884470|37|NZ_CP014870|CRT 1884470-1884506 37 NZ_CP014870.1 1883938-1883974 0 1.0
NZ_CP014870_4 4.3|1884137|37|NZ_CP014870|CRT 1884137-1884173 37 NZ_CP014870.1 1883938-1883974 1 0.973
NZ_CP014870_9 9.1|3078085|42|NZ_CP014870|CRISPRCasFinder 3078085-3078126 42 NZ_CP014870.1 2582700-2582741 2 0.952
NZ_CP014870_9 9.1|3078085|42|NZ_CP014870|CRISPRCasFinder 3078085-3078126 42 NZ_CP014870.1 2582842-2582883 2 0.952
NZ_CP014870_9 9.1|3078085|42|NZ_CP014870|CRISPRCasFinder 3078085-3078126 42 NZ_CP014870.1 2583055-2583096 2 0.952
NZ_CP014870_9 9.1|3078085|42|NZ_CP014870|CRISPRCasFinder 3078085-3078126 42 NZ_CP014870.1 2626389-2626430 2 0.952
NZ_CP014870_9 9.1|3078085|42|NZ_CP014870|CRISPRCasFinder 3078085-3078126 42 NZ_CP014870.1 2626673-2626714 2 0.952
NZ_CP014870_9 9.1|3078085|42|NZ_CP014870|CRISPRCasFinder 3078085-3078126 42 NZ_CP014870.1 2626815-2626856 2 0.952
NZ_CP014870_9 9.1|3078085|42|NZ_CP014870|CRISPRCasFinder 3078085-3078126 42 NZ_CP014870.1 2627241-2627282 2 0.952
NZ_CP014870_9 9.1|3078085|42|NZ_CP014870|CRISPRCasFinder 3078085-3078126 42 NZ_CP014870.1 4791715-4791756 2 0.952
NZ_CP014870_9 9.1|3078085|42|NZ_CP014870|CRISPRCasFinder 3078085-3078126 42 NZ_CP014870.1 5301096-5301137 2 0.952
NZ_CP014870_9 9.1|3078085|42|NZ_CP014870|CRISPRCasFinder 3078085-3078126 42 NZ_CP014870.1 5301238-5301279 2 0.952
NZ_CP014870_9 9.1|3078085|42|NZ_CP014870|CRISPRCasFinder 3078085-3078126 42 NZ_CP014870.1 2159922-2159963 2 0.952

1. spacer 4.8|1884470|37|NZ_CP014870|CRT matches to position: 1883938-1883974, mismatch: 0, identity: 1.0

gaaaacgccttcgcctgtaggagcgaggcttgcccgc	CRISPR spacer
gaaaacgccttcgcctgtaggagcgaggcttgcccgc	Protospacer
*************************************

2. spacer 4.3|1884137|37|NZ_CP014870|CRT matches to position: 1883938-1883974, mismatch: 1, identity: 0.973

gaagacgccttcgcctgtaggagcgaggcttgcccgc	CRISPR spacer
gaaaacgccttcgcctgtaggagcgaggcttgcccgc	Protospacer
***.*********************************

3. spacer 9.1|3078085|42|NZ_CP014870|CRISPRCasFinder matches to position: 2582700-2582741, mismatch: 2, identity: 0.952

tgtaggagcgaggcttgcccgcgaaccaggcgctgcggtata	CRISPR spacer
tgtaggagcgaggcttgcccgcgaaccaggcactgcggttta	Protospacer
*******************************.******* **

4. spacer 9.1|3078085|42|NZ_CP014870|CRISPRCasFinder matches to position: 2582842-2582883, mismatch: 2, identity: 0.952

tgtaggagcgaggcttgcccgcgaaccaggcgctgcggtata	CRISPR spacer
tgtaggagcgaggcttgcccgcgaaccaggcactgcggttta	Protospacer
*******************************.******* **

5. spacer 9.1|3078085|42|NZ_CP014870|CRISPRCasFinder matches to position: 2583055-2583096, mismatch: 2, identity: 0.952

tgtaggagcgaggcttgcccgcgaaccaggcgctgcggtata	CRISPR spacer
tgtaggagcgaggcttgcccgcgaaccaggcactgcggttta	Protospacer
*******************************.******* **

6. spacer 9.1|3078085|42|NZ_CP014870|CRISPRCasFinder matches to position: 2626389-2626430, mismatch: 2, identity: 0.952

tgtaggagcgaggcttgcccgcgaaccaggcgctgcggtata	CRISPR spacer
tgtaggagcgaggcttgcccgcgaaccaggcgccgcggtgta	Protospacer
*********************************.*****.**

7. spacer 9.1|3078085|42|NZ_CP014870|CRISPRCasFinder matches to position: 2626673-2626714, mismatch: 2, identity: 0.952

tgtaggagcgaggcttgcccgcgaaccaggcgctgcggtata	CRISPR spacer
tgtaggagcgaggcttgcccgcgaaccaggcactgcggttta	Protospacer
*******************************.******* **

8. spacer 9.1|3078085|42|NZ_CP014870|CRISPRCasFinder matches to position: 2626815-2626856, mismatch: 2, identity: 0.952

tgtaggagcgaggcttgcccgcgaaccaggcgctgcggtata	CRISPR spacer
tgtaggagcgaggcttgcccgcgaaccaggcactgcggtgta	Protospacer
*******************************.*******.**

9. spacer 9.1|3078085|42|NZ_CP014870|CRISPRCasFinder matches to position: 2627241-2627282, mismatch: 2, identity: 0.952

tgtaggagcgaggcttgcccgcgaaccaggcgctgcggtata	CRISPR spacer
tgtaggagcgaggcttgcccgcgaaccaggcactgcggttta	Protospacer
*******************************.******* **

10. spacer 9.1|3078085|42|NZ_CP014870|CRISPRCasFinder matches to position: 4791715-4791756, mismatch: 2, identity: 0.952

tgtaggagcgaggcttgcccgcgaaccaggcgctgcggtata	CRISPR spacer
tgtaggagcgaggcttgcccgcgaaccaggcgccgcggtgta	Protospacer
*********************************.*****.**

11. spacer 9.1|3078085|42|NZ_CP014870|CRISPRCasFinder matches to position: 5301096-5301137, mismatch: 2, identity: 0.952

tgtaggagcgaggcttgcccgcgaaccaggcgctgcggtata	CRISPR spacer
tgtaggagcgaggcttgcccgcgaaccaggggctgcggtgta	Protospacer
****************************** ********.**

12. spacer 9.1|3078085|42|NZ_CP014870|CRISPRCasFinder matches to position: 5301238-5301279, mismatch: 2, identity: 0.952

tgtaggagcgaggcttgcccgcgaaccaggcgctgcggtata	CRISPR spacer
tgtaggagcgaggcttgcccgcgaaccaggcgctacggtgta	Protospacer
**********************************.****.**

13. spacer 9.1|3078085|42|NZ_CP014870|CRISPRCasFinder matches to position: 2159922-2159963, mismatch: 2, identity: 0.952

tgtaggagcgaggcttgcccgcgaaccaggcgctgcggtata	CRISPR spacer
tgtaggagcgaggcttgcccgcgaaccaggcgctgtggtgta	Protospacer
***********************************.***.**

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 2473630 : 2519090 33 uncultured_Caudovirales_phage(42.86%) plate,tail,protease NA
DBSCAN-SWA_2 4406198 : 4412473 8 uncultured_Caudovirales_phage(83.33%) tRNA NA
DBSCAN-SWA_3 4746553 : 4754157 10 Enterobacteria_phage(50.0%) NA NA
DBSCAN-SWA_4 6282764 : 6331603 41 Bacteriophage(33.33%) protease,transposase,holin NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage