CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP015963	Altererythrobacter ishigakiensis strain NBRC 107699 chromosome, complete genome	1 crisprs	DEDDh,csa3,cas3,DinG	0	0	1	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP015963_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP015963_1

2102529-2102683

Orphan

Consensus_repeat	Method
GCCTATCGTGACGGTCGCAGAGATGG	CRISPRCasFinder

2 spacers

DinG

The CRISPR arrays of NZ_CP015963_1

>merge|NZ_CP015963|1|2102529-2102683|CRISPRCasFinder
GCCTATCGTGACGGTCGCAGAGATGGTCGCCGTATAGAGCGCAATCGCGACCGCTACGAGGATCGCAACATTCGCCGCAATGCCTATCGTGACGGTCGCAGAGATGGATACCGTGACGGCCGGCGCGGCGCGTATCGCGACGGCTATCGTGATGG

>NZ_CP015963|1|1|2102529-2102683|CRISPRCasFinder
GCCTATCGTGACGGTCGCAGAGATGG	TCGCCGTATAGAGCGCAATCGCGACCGCTACGAGGATCGCAACATTCGCCGCAAT
GCCTATCGTGACGGTCGCAGAGATGG	ATACCGTGACGGCCGGCGCGGC
GCGTATCGCGACGGCTATCGTGATGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP015963.1\|WP_067600701.1\|2109042_2109570_+\|histidine-phosphatase-family-protein	unknown	unknown	gnl\|CDD\|224973
NZ_CP015963.1\|WP_067600714.1\|2112156_2112906_+\|16S-rRNA-(uracil(1498)-N(3))-methyltransferase	unknown	unknown	gnl\|CDD\|236959
NZ_CP015963.1\|WP_067600680.1\|2100407_2100845_+\|FKBP-type-peptidyl-prolyl-cis-trans-isomerase	unknown	unknown	gnl\|CDD\|223976
NZ_CP015963.1\|WP_067600711.1\|2111209_2112118_-\|4-hydroxybenzoate-octaprenyltransferase	unknown	unknown	gnl\|CDD\|183808
NZ_CP015963.1\|WP_067600705.1\|2110146_2110527_+\|VOC-family-protein	unknown	unknown	gnl\|CDD\|372667
NZ_CP015963.1\|WP_067600676.1\|2095365_2097639_-\|TonB-dependent-receptor	unknown	unknown	gnl\|CDD\|238657
NZ_CP015963.1\|WP_083984762.1\|2092678_2094013_+\|MATE-family-efflux-transporter	unknown	unknown	gnl\|CDD\|240541
NZ_CP015963.1\|WP_067600678.1\|2098311_2099985_+\|energy-dependent-translational-throttle-protein-EttA	unknown	unknown	gnl\|CDD\|236992
NZ_CP015963.1\|WP_067600687.1\|2101184_2101766_-\|flavin-binding-protein	unknown	unknown	gnl\|CDD\|274927
NZ_CP015963.1\|WP_067600695.1\|2104521_2106150_-\|lysine--tRNA-ligase	unknown	unknown	gnl\|CDD\|234829
NZ_CP015963.1\|WP_067600684.1\|2100900_2101149_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP015963.1\|WP_144573608.1\|2089341_2089731_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP015963.1\|WP_067602904.1\|2103158_2103716_-\|cytochrome-b/b6-domain-containing-protein	unknown	unknown	gnl\|CDD\|225580
NZ_CP015963.1\|WP_067600707.1\|2110576_2111203_-\|SOS-response-associated-peptidase-family-protein	unknown	unknown	gnl\|CDD\|376837
NZ_CP015963.1\|WP_067600674.1\|2094009_2095215_-\|GGDEF-domain-containing-protein	unknown	unknown	gnl\|CDD\|143635
NZ_CP015963.1\|WP_067600692.1\|2103848_2104517_+\|2OG-Fe(II)-oxygenase	unknown	unknown	gnl\|CDD\|214780
NZ_CP015963.1\|WP_067600672.1\|2089909_2090374_-\|Lrp/AsnC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224439
NZ_CP015963.1\|WP_067602899.1\|2090601_2092365_+\|HAMP-domain-containing-histidine-kinase	unknown	unknown	gnl\|CDD\|223715
NZ_CP015963.1\|WP_067600698.1\|2106287_2109041_+\|ATP-dependent-DNA-helicase	DinG	COG1199_DinG_CAS-IV-A	gnl\|CDD\|224120
NZ_CP015963.1\|WP_144573689.1\|2109566_2110007_-\|redox-sensitive-transcriptional-activator-SoxR	unknown	unknown	gnl\|CDD\|133385

Protein	Function_ID	Function_description	E-value
NZ_CP015963.1\|WP_067600701.1\|2109042_2109570_+\|histidine-phosphatase-family-protein	gnl\|CDD\|224973	COG2062, SixA, Phosphohistidine phosphatase SixA [Signal transduction mechanisms].	1.42295e-32
NZ_CP015963.1\|WP_067600714.1\|2112156_2112906_+\|16S-rRNA-(uracil(1498)-N(3))-methyltransferase	gnl\|CDD\|236959	PRK11713, PRK11713, 16S ribosomal RNA methyltransferase RsmE; Provisional.	1.71419e-73
NZ_CP015963.1\|WP_067600680.1\|2100407_2100845_+\|FKBP-type-peptidyl-prolyl-cis-trans-isomerase	gnl\|CDD\|223976	COG1047, SlpA, FKBP-type peptidyl-prolyl cis-trans isomerases 2 [Posttranslational modification, protein turnover, chaperones].	2.25107e-32
NZ_CP015963.1\|WP_067600711.1\|2111209_2112118_-\|4-hydroxybenzoate-octaprenyltransferase	gnl\|CDD\|183808	PRK12878, ubiA, 4-hydroxybenzoate octaprenyltransferase.	3.36782e-136
NZ_CP015963.1\|WP_067600705.1\|2110146_2110527_+\|VOC-family-protein	gnl\|CDD\|372667	pfam13669, Glyoxalase_4, Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily.	1.08835e-10
NZ_CP015963.1\|WP_067600676.1\|2095365_2097639_-\|TonB-dependent-receptor	gnl\|CDD\|238657	cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel. Ligands apparently bind to the large extracellular loops. The N-terminal 150-200 residues form a plug from the periplasmic end of barrel. Energy (proton-motive force) and TonB-dependent conformational alteration of channel (parts of plug, and loops 7 and 8) allow passage of ligand. FepA residues 12-18 form the TonB box, which mediates the interaction with the TonB-containing inner membrane complex. TonB preferentially interacts with ligand-bound receptors. Transport thru the channel may resemble passage thru an air lock. In this model, ligand binding leads to closure of the extracellular end of pore, then a TonB-mediated signal facillitates opening of the interior side of pore, deforming the N-terminal plug and allowing passage of the ligand to the periplasm. Such a mechanism would prevent the free diffusion of small molecules thru the pore.	5.90419e-32
NZ_CP015963.1\|WP_067600687.1\|2101184_2101766_-\|flavin-binding-protein	gnl\|CDD\|274927	TIGR04026, hypothetical_protein, PPOX class probable FMN-dependent enzyme, alr4036 family. Members of the PPOX family (see pfam01243) may contain either FMN or F420 as cofactor. This subfamily described here is widespread in Cyanobacteria and plants, and is named for alr4036 from Nostoc sp. PCC 7120. The family consists mostly of proteins from species that lack the capability to synthesize F420, so it is probable that all members bind FMN rather than F420. [Unknown function, Enzymes of unknown specificity].	3.72045e-08
NZ_CP015963.1\|WP_067600678.1\|2098311_2099985_+\|energy-dependent-translational-throttle-protein-EttA	gnl\|CDD\|236992	PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed.	0
NZ_CP015963.1\|WP_067600672.1\|2089909_2090374_-\|Lrp/AsnC-family-transcriptional-regulator	gnl\|CDD\|224439	COG1522, Lrp, Transcriptional regulators [Transcription].	6.32345e-48
NZ_CP015963.1\|WP_083984762.1\|2092678_2094013_+\|MATE-family-efflux-transporter	gnl\|CDD\|240541	cd13136, MATE_DinF_like, DinF and similar proteins, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins. Escherichia coli DinF is a membrane protein that has been found to protect cells against oxidative stress and bile salts. The expression of DinF is regulated as part of the SOS system. It may act by detoxifying oxidizing molecules that have the potential to damage DNA. Some member of this family have been reported to enhance the virulence of plant pathogenic bacteria by enhancing their ability to grow in the presence of toxic compounds. Proteins from the MATE family are involved in exporting metabolites across the cell membrane and are often responsible for multidrug resistance (MDR).	2.21422e-88
NZ_CP015963.1\|WP_144573689.1\|2109566_2110007_-\|redox-sensitive-transcriptional-activator-SoxR	gnl\|CDD\|133385	cd01110, HTH_SoxR, Helix-Turn-Helix DNA binding domain of the SoxR transcription regulator. Helix-turn-helix (HTH) transcriptional regulator SoxR. The global regulator, SoxR, up-regulates gene expression of another transcription activator, SoxS, which directly stimulates the oxidative stress regulon genes in E. coli. The soxRS response renders the bacterial cell resistant to superoxide-generating agents, macrophage-generated nitric oxide, organic solvents, and antibiotics. The SoxR proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the unusually long spacer between the -35 and -10 promoter elements. They also harbor a regulatory C-terminal domain containing an iron-sulfur center.	2.70704e-70
NZ_CP015963.1\|WP_067602904.1\|2103158_2103716_-\|cytochrome-b/b6-domain-containing-protein	gnl\|CDD\|225580	COG3038, CybB, Cytochrome B561 [Energy production and conversion].	2.61334e-25
NZ_CP015963.1\|WP_067600707.1\|2110576_2111203_-\|SOS-response-associated-peptidase-family-protein	gnl\|CDD\|376837	pfam02586, SRAP, SOS response associated peptidase (SRAP). The SRAP family functions as a DNA-associated autoproteolytic switch that recruits diverse repair enzymes onto DNA damage. We propose that the human protein Q96FZ2:UniProtKB, the eukaryotic member of the SRAP family, which has been recently shown to bind specifically to DNA with 5-hydroxymethylcytosine, 5-formylcytosine and 5-carboxycytosine, is a sensor for these oxidized bases generated by the TET (tetrahedral aminopeptidase of the M42 family) enzymes from methylcytosine. Hence, its autoproteolytic activity might help it act as a switch that recruits DNA repair enzymes to remove these oxidized methylcytosine species as part of the DNA demethylation pathway downstream of the TET enzymes.	9.43548e-29
NZ_CP015963.1\|WP_067600674.1\|2094009_2095215_-\|GGDEF-domain-containing-protein	gnl\|CDD\|143635	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain. Diguanylate-cyclase (DGC) or GGDEF domain: Originally named after a conserved residue pattern, and initially described as a domain of unknown function 1 (DUF1). This domain is widely present in bacteria, linked to a wide range of non-homologous domains in a variety of cell signaling proteins. The domain shows homology to the adenylyl cyclase catalytic domain. This correlates with the functional information available on two GGDEF-containing proteins, namely diguanylate cyclase and phosphodiesterase A of Acetobacter xylinum, both of which regulate the turnover of cyclic diguanosine monophosphate. Together with the EAL domain, GGDEF might be involved in regulating cell surface adhesion in bacteria.	3.56097e-53
NZ_CP015963.1\|WP_067600692.1\|2103848_2104517_+\|2OG-Fe(II)-oxygenase	gnl\|CDD\|214780	smart00702, P4Hc, Prolyl 4-hydroxylase alpha subunit homologues. Mammalian enzymes catalyse hydroxylation of collagen, for example. Prokaryotic enzymes might catalyse hydroxylation of antibiotic peptides. These are 2-oxoglutarate-dependent dioxygenases, requiring 2-oxoglutarate and dioxygen as cosubstrates and ferrous iron as a cofactor.	3.13944e-23
NZ_CP015963.1\|WP_067600695.1\|2104521_2106150_-\|lysine--tRNA-ligase	gnl\|CDD\|234829	PRK00750, lysK, lysyl-tRNA synthetase; Reviewed.	0
NZ_CP015963.1\|WP_067602899.1\|2090601_2092365_+\|HAMP-domain-containing-histidine-kinase	gnl\|CDD\|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	4.87934e-09
NZ_CP015963.1\|WP_067600698.1\|2106287_2109041_+\|ATP-dependent-DNA-helicase	gnl\|CDD\|224120	COG1199, DinG, Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair].	2.01978e-69

>NZ_CP015963.1|WP_067600687.1|2101184_2101766_-|flavin-binding-protein
MFDTFEDIHRDISARLARAASDRKSPMHTPVIATADADARVMVLRHFVADTWRLRLHTDARSPKCDVIGDGAPVGALFYDKAAKVQIRVRGTGRIETDTPLVEQAWAESTNFAKRCYLGDGPGAHSNLPTSGLPDWAEGIQPTDEQIMPARENFAVLLIDLHELDWFYLANSGHIRAQFSRDGGEWEGRWVAP
>NZ_CP015963.1|WP_067600684.1|2100900_2101149_-|hypothetical-protein
MRVSERTRRTLEFLVIGILMGVSEDLLAVWLSTGEPITWSVLWIVIAVAIPFAFISEFVVDHPDFWKNTIGLRLKKDGSRPS
>NZ_CP015963.1|WP_067600680.1|2100407_2100845_+|FKBP-type-peptidyl-prolyl-cis-trans-isomerase
MTTPNTGDTVTIDYVLKRTDGQEVGNTAQVGPQEIQLGSGQIFPQIEEALTEMAVGDEQTVAIPCDQAFGPRRDEMIMNIPRGNLPPEPAPEPGMALQAQSPDGQPLTLYIVDVGEDTIKVDGNHPLAGEDITFNLTLREIKRAA
>NZ_CP015963.1|WP_067600678.1|2098311_2099985_+|energy-dependent-translational-throttle-protein-EttA
MAAQYAYVMKNMTKTFPGAQKPVLSNINLQFYQGAKIGIVGPNGAGKSTLMKIMAGIDTDISGEAWPGENITVGYLPQEPELDTSKTVLENVKDGARHIADKVDEYNAIAAQMAEPDADFEALGEQMAELQTEIDAVDGWTLDNQLEIAMEALRCPPSDSPVDNLSGGEKRRVALTRLLIQKPSILLLDEPTNHLDAESVEWLENHLKEYAGAVLMITHDRYFLDNVVGWILELDRGTYYPYEGNYSTYLEKKAKRLEQESREESGRQKALSRELEWIRQSPSARQTKSKARIRKFEQLQDAQNDRKPGKAQIVIQVPERLGGKVIEAKNISKAYGDKLLFENLSFMLPPGGIVGVIGPNGAGKSTLFRMITGQETPDSGTIEIGDTVRLGYVDQSRDDLDPKNNVWEEISDGLDYMKVNGHDMSTRAYVGAFNFKGADQQKNVGKLSGGERNRVHMAKMLKQGGNVLLLDEPTNDLDVETLGALEEAIENFAGCAVVISHDRFFLDRLATHILAFEGNSHVEWFEGNFEAYEEDKRRRLGDAADRPTRLAYKKLTR
>NZ_CP015963.1|WP_067600676.1|2095365_2097639_-|TonB-dependent-receptor
MRFSRFLSTAASAAIATTMLTATPVAAQDSDVTAEDEAGVGTIIVTANRREENLQEVPVSVGTLGGEALQVASGAGADIRALSGRVPSLNIESSFGRTFPRFYIRGLGNTDFDLNASQPVSLVYDDVVLENPVLKGFPVFDLDRVEVLRGPQGTLFGRNTPAGIVKFDTVKPGRGENYVRASYARFNTINLEGAVGGDLSDVASVRLSGLYQGRSDYVDNLDTAQKDDLEGFDEIALRAQIQLEPTDDFSLRLIGQYRDLDGTARVFRANAFATGSNDLIGLDGPGSKFERDETRADGINFQDLKSYNLGAVWEYDLGAATITSVTSYWNAELESRGDIDGGFGNAFAPEMGPGFIPFSAQSQDNVPSLDQYTQEIRIASNDGGPLGYQAGFFYFNEQLNIESFDFGTPTDLTPAAVARQRQESEAWALFASLFYQFDNGLRIQGGIRYNDDKRDFAADRPVDTRPGFLGFGGPVPTQRTSVDDEVITWDLAATVPASDDVNVYARVARGYRAPSVQGRLAFGRELSVADSETTMSYEAGVKTILADGMVRLNLGGFYYTTEDLQLTAVGGTNNFTTLLNADEVEGYGFEAELQARPMEGIEFAGGLSYNDTQINDPNAFVAGCGAPCTVLDLERTAGSNIYSIDGNTLPQAPKWAANWSLGLTEEIPGTNGEIYLFTDWTYRSKVQFFLYESVEFSDDSMLEGGLRIGYRTDRYDFAFFGRNITNDVSAVSGIDFNNLTAMVNEPRIWGAEVGITF
>NZ_CP015963.1|WP_067600674.1|2094009_2095215_-|GGDEF-domain-containing-protein
MQAVLVELITPSMALFFSACFFLLWWKSGLGRYVLAFAGAYLFSATGFLIAISLAPDSSITFQASQIAYSIAAVCMIWGACDRVKQPPFLKVLAIIYLIAAAMLIAEVLLTRDAGPRLVISNTGYGIMLLVGVISLLSSPRRNLADNLVIAILAINAADFLVRPTVTILIEGQIDVAVYHDSVYFSLINLVLSIKAVATATVLFGACLSDYLTRLKESALHDDLTGLKSRAAFEDEARAMMKRGQDGANSVAMVIADIDHFKQVNDIWGHQAGDTAIINFGDLLEGTIRGCDVSARIGGEEFCLVVWNCGLDDAAGLAERIRLAFAQMEHRGVGPDIRLTASFGVAEMHKGESYESLFARADAALYQAKEEGRNQVISDLRGERERSVSARLATVIERHVA
>NZ_CP015963.1|WP_083984762.1|2092678_2094013_+|MATE-family-efflux-transporter
MTKFPAHMPLDTRAIWAIAIPAMLTNVATALIGIGDMWIVGRLEDAATQGAVDVGARLFAVLFTVMNFLKTGTTGLVAQAGARDGEVEQVRLLARGLIVGTTIAALLILLKPLLMPLFLGALGASGDVLDAASIYAEIRYWTAPGVMLNLALIGFLVGRRQMTAVLIVEVIYNVLNVVLGLFLALQLDWGIAGIGWSSFIAEYVKLAILSALILFRPSGRNLIGAIFDAATIDWMKLRPFLNTNRDLFLRTLVLTVALAAITRLSAERGPEVLAANGIIYQLFIFTALLLDGFENAAQVLNGERAGAKDLGGFAAYTTAILWRGFAIAALLSCGFAFLADPILESFAATPDVASVAQSQALWLVLMPFAGLASFVFDGVFVGASWTRAMLISMIGASAVFALSLWLSWPLGNAGLWGSFILFLATRAGLQAMMLPSLTQQSFRS
>NZ_CP015963.1|WP_067602899.1|2090601_2092365_+|HAMP-domain-containing-histidine-kinase
MFFDDRLATVLRHRATSERGARTQFRQLLDLLGGRSYGRDSSLLAAAWLRLGALGEQIPAKERARIVREPSWRFRSVHLAAHLAEDEPEVASAALARADLDEDDWLSLIPHLPIRARGFLRNRSDLPEGASRLLDQLGIHDRGLPNPESRAPAKSDESDEIVELDVEAPPLPEPEPEPSNKSDRMPGSPIPRRPAAQAGADEKSVIAATIERIAQFRRDHAPEPASDLSPRLPLGEQTSRPQHEITSFAFESDAQGRIIWAESGVAPMVIGQRIADRRKAETAGSFDPMASAVGQQQPIEHGTRVLEGAAAIRGRWIVDAHPRFSRSGGRFHGYVGRFRRPFDRSKAIGAKSEADRLRQLLHELRTPVNAVQGFAELIHQQLYGPVPNAYRALAATIAGDAANILAGFDELERLAKLESGAISLGGGKTDLVSLLRRTSEQLNHVLAPRMAGIEFAQTQQRSMWVEVDPDEAEAMIWRLLATLAGATVVGEAITAELELENDRAKFWCQLPAQLIAEDDAFIAEVSRQTSEISSGLFGAGFSLRLARAEAKGAGGDLVQDEDRLLLTLPLTAVTGVSADDASDAVSV
>NZ_CP015963.1|WP_067600672.1|2089909_2090374_-|Lrp/AsnC-family-transcriptional-regulator
MASLDEIDRRLLAELQSEGRVTNVELAHRVGLTAPPCLRRVRGLEDEGVIRGYHADLDASKLGFAITVFAMVSLKSQAESALREFEEAMRELPEVREVHMLNGEIDFILKVVSRDLQSFQEFLTSKLTPAPNVESVKTSLTIRTAKHEPGVPLE
>NZ_CP015963.1|WP_144573608.1|2089341_2089731_-|hypothetical-protein
MKINSKVTGLSSVFLMALALLIPGQLTAQDGSGRGSQQANYHLMQLSVQTDKVSLEEFDTRTREIRSCRDARDLAKTFGADIKRDRFVMPHQLPEELSEELSNTPTGHATKVFSADPSVMRVIVICHRV
>NZ_CP015963.1|WP_067602904.1|2103158_2103716_-|cytochrome-b/b6-domain-containing-protein
MADGTRTKYSGIAMALHWFIAAGVIANWLIRRTAKATESEEAARAIMSNHFSIGVTLWFLAVALLIVHFTGGKAPLASHLATWERWLARIVHTLFFILLLVMPFGAWSAMSQYGAPISVFGLFSVPPLPMEVNPEAAKAAFEQHGQAGAFLLMLLVVHVLGTLKHTLLDRDGNLFRMLPFGNPKG
>NZ_CP015963.1|WP_067600692.1|2103848_2104517_+|2OG-Fe(II)-oxygenase
MAKADVIPDKDALKRVGNQVRWRIENDPRAYKIETDKAEIFAFGDFLSGAECERLCLMIDLTAKPSTLHEEDYSSGFRTSYSGDLDPYDPFVMGISRRIDDLLGMNPVCGEAIQGQRYLPGQEFKPHNDWFYTTEKYWELERKRGGQRCWTAMAFLNQVEEGGDTHFTEVGVKIEPKPGVLLVWNNAKPDGTPNVDTMHAGTPVVKGSKYVITKWYRTRKWT
>NZ_CP015963.1|WP_067600695.1|2104521_2106150_-|lysine--tRNA-ligase
MSMNDLMEAARVNKAWPFQEAQRLLKRYPDGAKPDGSPILFETGYGPSGLPHIGTFQEVLRTTLVRRAFEAMIGAKPEDGKTRLVAFSDDMDGLRKVPDNIPNAHVLEENLHKPLSRIPDPFEKGHESFAHHNNTKLREFLDRFGFDYEFVAANDMYNSGRFDAALRQVLRKNQDILDIMLPTLREERRQTYSPVLPISPNTGKVLQVPVEVLDAEAGMIRFTDEDGSVVEQSALGGMSKLQWKVDWAMRWYALDVDYEMYGKDLTDSGVQSGKIVKVLGGRKPEGLIYEMFLDEKGEKISKSKGNGLTIEEWLTYGSEESLGFYIFNNPKSAKQLHVGVIPRAVDDYWQFRERIPTQDLDKQLGNPVWHLLRANGGYEAEEAPGAGETLPVSYGLLLNLASVLGAEATPEALTDYLRTYLGDVEIRPELAVLIDNAINYTRDYIVPTLNKRAPVGGEVDALKALDAGLANASEETPAEDLQTMVYEIGKQEDFGFENLRDWFRALYETLLGSEQGPRMGSFIALYGVANSRKLIAEALAKA
>NZ_CP015963.1|WP_067600698.1|2106287_2109041_+|ATP-dependent-DNA-helicase
MSAALPFSPLALSALHASHSGTWLVRANAHTEAVSKGDAIMAAADTPLLILNAPLVANRLGYPDLSGLDLLELYAFVHPARFCVPTPRGLAEALELDEPESDSDVPAFLQEAAGALIAVCQSENWSEREGAWSALQSLVKLRWPWAQVLAPHIARPERAEKWLFSRLPEWEEAPERPAPKQIELPPEAVLKRLGELTGEGAEKREGQQMYSRDAAQVFAPRDKRDNPHLLLAQAGTGIGKTLGYLAPASLWSEASGGTVWVSTYTKNLQRQLRQESRRAWPAERSDGSRPVVVRKGRENYLCLLNLEDALQGGFAGRAAILAQLVARWAAYSQDGDMIGGDLPGWLGTLFRKRGIAALTDQRGECVYAGCPHYRKCFIEHAARSSAQADLVIANHALVMVNAARGRDHAQRPTRIVFDEGHHVFDAADSTFAAALTGQEAIELRRWIIGPERKNRGRRRGLAARLADVASYDEAGGNAIEAAVNAAEALPAEGWLQRLNENDPSGPVEALLASVRATTYARDESGGQEAGYGIETEAASLPGELIQAAGEAEEALAAIRAPLIKLATRLEAVLEDAPDWLDAQGRARIDGARYSLSWRIDTLAAWEALLERMGGPADPEFVDWLAVDRSDAREFDIGVHRHWLDPMKPFAKVVLEPSHGTMLTSATLTNQTEEGPDWQSALERSGAPHLELEPKLTSAESPFDYASRAEVLIVTDIKKGDLPALAGAYARLIEASDGGLLGLFTAIRRMRAVHGRIADRLARAGLPLYAQHVDPIDTGTLVDIFRDDPRASLLGTDALRDGVDVPGHSLRCVVMEQVPWPRPDILHKARRLAGGGSAYDDKIIRARLAQAFGRLIRSKDDAGHFVVLSPAFPSRLLNAFPTGTPVIRLTLEEALQRVAAGVSSIDNAADVPVGEEPA
>NZ_CP015963.1|WP_067600701.1|2109042_2109570_+|histidine-phosphatase-family-protein
MKILGLFRHAKSDWDDMAKRDFDRGLNDRGRRGAKLMGDHIRKHGIKWGTVIASPAERNRLTMEAAMPDADVQYDKRIYLASSDTILETVADLAGTSDTVLVSGHNPGMQEVLLELVSEEHENKLFFEAARKFPTASYAVLELDIEDWSELKPRCGKLVHFARPRDLDAELGPEA
>NZ_CP015963.1|WP_144573689.1|2109566_2110007_-|redox-sensitive-transcriptional-activator-SoxR
MKSSDLLPIGDLARRTGLSVSAIRFYEEKGLVEPIRTAGNQRRFLRSDIRRLSFILIAQQLGLALSEIEAELAKLPHGRTPTASDWNAISQSIRGQLDAKITQLERTRDRLNGCIGCGCLSLSRCQLFNKDDHLSKQGPGPRQVLG
>NZ_CP015963.1|WP_067600705.1|2110146_2110527_+|VOC-family-protein
MPKGQIEHANLTVTNPDRSADLFKSLLGWHERWRGKSQMGGDTIHVGDETTYLALYTNDDARGGYSKGQPLNHVGLLVDDLDGAEAIVAGAGLKPFGHDDYEPGKRFYFFDWDGIEFEVVSYAEEA
>NZ_CP015963.1|WP_067600707.1|2110576_2111203_-|SOS-response-associated-peptidase-family-protein
MCNLYRMTKTQDEVAQWFDAIDALGGANFSGEVFPGYPGMVVAEGQLKRMNWGFPLVMKGKQGQPLKPKPVNNTRTDKLDSFFWRHSFEERRCLIPVTAWAEAEGPKGSKTRTWLSLPDSEMFACAGIWRTSDEWGDCYSMVMTDAAGAASEVHTRMPVILPRENYGVWTAGSSDEARNLCRPWNSAINLDRTDQPWAGGVASQRSLL
>NZ_CP015963.1|WP_067600711.1|2111209_2112118_-|4-hydroxybenzoate-octaprenyltransferase
MNDQIVPDSEHRGLVARLPRLPRDLAQLARFDRPIGWWLLFWPCVFGVWLAGAGWQLSLLGWLLLGAIVMRGAGCVYNDIVDANLDASVARTASRPVASGRVSKQLAWGWLVALCLIGLVVLLQLRLEAQTVALASLALVAAYPFMKRITWWPQAWLGLVFNWGLLVGWTQLRLDNWDALASLYAGCICWVIGYDTIYALQDREDDALVGIKSSALRMGEAVKGGVTAFYLGALALWALGFWLYRADWIALLALIPVAGHLLWQVATLDPADPDNPLARFRSNRWAGALMALACFVVGNAGA
>NZ_CP015963.1|WP_067600714.1|2112156_2112906_+|16S-rRNA-(uracil(1498)-N(3))-methyltransferase
MPAKPAWPPRSAPRLFVNDELTAGRIFAIEGQQAHYLSKVMRVRDGDAVILCDNVTGEWATRVGKVDKRRVDLTVVEKLRAREEVPDFWLCPALLKKDRFDLVLEKATELGVAEIHPILMRRCVADKLNLERANTITTEAAEQCARTALPELREPAKLDALLRGWPNDRILYFADEMGGEPAGDAFATNSGPAAMLIGPEGGFDDSERELLRSHRHVKPISLGPRILRGETAAIAATALWMGIKGDWNN

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1075935 : 1136300

Ralstonia_phage(23.08%)

integrase,protease

attL 1099357:1099373|attR 1128527:1128543

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_067598172.1\|1075935_1077108_+\|integrase	tyrosine-type recombinase/integrase	A0A221SAN4	Ralstonia_phage	1.4e-35	29.9
WP_067598176.1\|1077104_1078307_+\|integrase	site-specific integrase	A0A221SAN4	Ralstonia_phage	2.4e-35	30.7
WP_067598179.1\|1078390_1079128_-	anaerobic ribonucleoside-triphosphate reductase activating protein	NA	NA	NA	NA
WP_144573739.1\|1079129_1081151_-	ribonucleoside triphosphate reductase	D9ZNH0	Clostridium_phage	6.2e-124	38.8
WP_067598183.1\|1081484_1083119_+	indolepyruvate/phenylpyruvate decarboxylase	NA	NA	NA	NA
WP_067602515.1\|1083148_1084768_-	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA
WP_067598186.1\|1084845_1085565_-	superoxide dismutase	NA	NA	NA	NA
WP_067598189.1\|1085677_1086289_-	carbonic anhydrase	NA	NA	NA	NA
WP_067598191.1\|1086339_1086810_-	hypothetical protein	NA	NA	NA	NA
WP_067602518.1\|1086892_1088107_+	hypothetical protein	NA	NA	NA	NA
WP_067598194.1\|1088103_1088799_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_067598197.1\|1089016_1091764_+	MFS transporter	NA	NA	NA	NA
WP_067598200.1\|1091760_1095498_+	nitrate reductase subunit alpha	NA	NA	NA	NA
WP_067598203.1\|1095494_1097024_+	nitrate reductase subunit beta	A0A077SL61	Escherichia_phage	8.2e-20	41.6
WP_144573743.1\|1097023_1097728_+	nitrate reductase molybdenum cofactor assembly chaperone	NA	NA	NA	NA
WP_067598206.1\|1097731_1098433_+	respiratory nitrate reductase subunit gamma	NA	NA	NA	NA
WP_067598208.1\|1098425_1099238_+	peptidylprolyl isomerase	NA	NA	NA	NA
WP_067602524.1\|1099267_1100263_+	GTP 3',8-cyclase MoaA	NA	NA	NA	NA
1099357:1099373	attL	NA	NA	NA	NA
WP_067598211.1\|1100266_1100527_+	MoaD/ThiS family protein	NA	NA	NA	NA
WP_144573745.1\|1100523_1101024_+	molybdenum cofactor biosynthesis protein MoaE	NA	NA	NA	NA
WP_067602527.1\|1100999_1101536_+	molybdenum cofactor biosynthesis protein	NA	NA	NA	NA
WP_067598216.1\|1101487_1102717_+	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA
WP_067602530.1\|1102747_1103953_+	NnrS family protein	NA	NA	NA	NA
WP_169816554.1\|1103996_1104590_-	NTP transferase domain-containing protein	NA	NA	NA	NA
WP_067598222.1\|1104586_1105180_-	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA
WP_067598225.1\|1105176_1106439_-	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA
WP_067598228.1\|1106553_1107402_+	cupin domain-containing protein	NA	NA	NA	NA
WP_067602533.1\|1107651_1108350_+	Crp/Fnr family transcriptional regulator	NA	NA	NA	NA
WP_067598231.1\|1108464_1109238_+	Crp/Fnr family transcriptional regulator	NA	NA	NA	NA
WP_067602537.1\|1109374_1110688_+	oxygen-independent coproporphyrinogen III oxidase	NA	NA	NA	NA
WP_067598235.1\|1111019_1111418_+	single-stranded DNA-binding protein	A0A0K1LLJ2	Bacillus_phage	2.6e-10	32.2
WP_067598238.1\|1111542_1111980_+	hypothetical protein	NA	NA	NA	NA
WP_067598244.1\|1112219_1112441_+	hypothetical protein	NA	NA	NA	NA
WP_083984701.1\|1113110_1113440_+	hypothetical protein	NA	NA	NA	NA
WP_067602541.1\|1113456_1113678_+	AlpA family transcriptional regulator	A0A2H4J8C8	uncultured_Caudovirales_phage	1.6e-09	49.2
WP_067602544.1\|1113706_1114867_-\|integrase	site-specific integrase	A0A077KET4	Ralstonia_phage	3.4e-74	40.2
WP_067598252.1\|1115358_1116183_+	DUF1134 domain-containing protein	NA	NA	NA	NA
WP_067602548.1\|1116283_1117459_+	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA
WP_067598256.1\|1117580_1118054_+	hypothetical protein	NA	NA	NA	NA
WP_067598259.1\|1118130_1118751_-	riboflavin synthase	A0A2H4PQS5	Staphylococcus_phage	1.6e-22	34.8
WP_083984838.1\|1118767_1119709_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	NA	NA	NA
WP_067598265.1\|1119733_1120210_-	hypothetical protein	NA	NA	NA	NA
WP_067598268.1\|1120256_1120979_-	M48 family metallopeptidase	NA	NA	NA	NA
WP_067598271.1\|1120975_1121419_-	YcgN family cysteine cluster protein	NA	NA	NA	NA
WP_144573749.1\|1121406_1122024_-	SCO family protein	NA	NA	NA	NA
WP_083984839.1\|1122190_1122730_+	ankyrin repeat domain-containing protein	NA	NA	NA	NA
WP_067598281.1\|1122731_1123391_+	COQ9 family protein	NA	NA	NA	NA
WP_067598283.1\|1123495_1123990_+	single-stranded DNA-binding protein	A0A0U2C0X4	Paracoccus_phage	3.2e-50	80.2
WP_067598286.1\|1124010_1124718_-	hypothetical protein	NA	NA	NA	NA
WP_067598289.1\|1124792_1125320_-	DUF177 domain-containing protein	NA	NA	NA	NA
WP_067598292.1\|1125316_1125844_-	hypothetical protein	NA	NA	NA	NA
WP_067598295.1\|1126037_1126496_+	outer membrane protein assembly factor BamE	NA	NA	NA	NA
WP_067598298.1\|1126552_1127113_+\|protease	ATP-dependent protease subunit HslV	NA	NA	NA	NA
WP_067598301.1\|1127118_1128420_+\|protease	ATP-dependent protease ATPase subunit HslU	A0A2H5BJT2	Erwinia_phage	7.2e-33	27.3
WP_083984840.1\|1128449_1128830_+	ACT domain-containing protein	NA	NA	NA	NA
1128527:1128543	attR	NA	NA	NA	NA
WP_067598304.1\|1128820_1130314_-	SulP family inorganic anion transporter	A0A2H4J153	uncultured_Caudovirales_phage	7.7e-148	58.7
WP_067598307.1\|1130568_1133436_+	insulinase family protein	G3MBJ8	Bacillus_virus	7.4e-22	23.7
WP_067598310.1\|1133439_1135257_-	ABC transporter ATP-binding protein/permease	W8CYL7	Bacillus_phage	3.4e-49	27.8
WP_067602554.1\|1135313_1136300_-\|protease	aspartyl protease family protein	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage