CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP012968	Staphylococcus sp. AntiMn-1 isolate deep-sea sediment of east Pacific Nodule Province chromosome, complete genome	2 crisprs	cas3,DinG,DEDDh,csa3,WYL	0	1	8	0
NZ_CP013300	Staphylococcus sp. AntiMn-1 isolate deep-sea sediment of east Pacific Nodule Province plasmid AM1_232, complete sequence	0 crisprs	NA	0	0	0	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP012968_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP012968_1

20650-20748

Orphan

Consensus_repeat	Method
AAAGGAACGCCTGAGCTAAAGCTCATGCATAAGA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP012968_1

>merge|NZ_CP012968|1|20650-20748|CRISPRCasFinder
AAAGGAACGCCTGAGCTAAAGCTCATGCATAAGAGCAACTCATCCCAATAATTTGGGGAATTAAAAAAGGAACGCCTGAGCTAAAGCTCATGCATAAGA

>NZ_CP012968|1|1|20650-20748|CRISPRCasFinder
AAAGGAACGCCTGAGCTAAAGCTCATGCATAAGA	GCAACTCATCCCAATAATTTGGGGAATTAAA
AAAGGAACGCCTGAGCTAAAGCTCATGCATAAGA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP012968.1\|WP_071561883.1\|15127_16147_-\|ketol-acid-reductoisomerase	unknown	unknown	gnl\|CDD\|235491
NZ_CP012968.1\|WP_002507118.1\|10434_11010_-\|3-isopropylmalate-dehydratase-small-subunit	unknown	unknown	gnl\|CDD\|179314
NZ_CP012968.1\|WP_002507123.1\|16183_16657_-\|acetolactate-synthase-small-subunit	unknown	unknown	gnl\|CDD\|183365
NZ_CP012968.1\|WP_021339958.1\|16653_18444_-\|biosynthetic-type-acetolactate-synthase-large-subunit	unknown	unknown	gnl\|CDD\|180919
NZ_CP012968.1\|WP_021339961.1\|21237_21900_+\|tRNA-(adenosine(37)-N6)-threonylcarbamoyltransferase-complex-dimerization-subunit-type-1-TsaB	unknown	unknown	gnl\|CDD\|274750
NZ_CP012968.1\|WP_021339966.1\|28910_29873_+\|LacI-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|380484
NZ_CP012968.1\|WP_064782799.1\|24485_26414_-\|ABC-F-type-ribosomal-protection-protein	unknown	unknown	gnl\|CDD\|223562
NZ_CP012968.1\|WP_002507135.1\|28539_28767_+\|sulfurtransferase-TusA-family-protein	unknown	unknown	gnl\|CDD\|223502
NZ_CP012968.1\|WP_021339959.1\|18456_20145_-\|dihydroxy-acid-dehydratase	unknown	unknown	gnl\|CDD\|234861
NZ_CP012968.1\|WP_021339954.1\|11011_12382_-\|3-isopropylmalate-dehydratase-large-subunit	unknown	unknown	gnl\|CDD\|235490
NZ_CP012968.1\|WP_021339956.1\|13436_14972_-\|2-isopropylmalate-synthase	unknown	unknown	gnl\|CDD\|234864
NZ_CP012968.1\|WP_021339962.1\|22329_23358_+\|tRNA-(adenosine(37)-N6)-threonylcarbamoyltransferase-complex-transferase-subunit-TsaD	unknown	unknown	gnl\|CDD\|236585
NZ_CP012968.1\|WP_064782798.1\|12399_13440_-\|3-isopropylmalate-dehydrogenase	unknown	unknown	gnl\|CDD\|234832
NZ_CP012968.1\|WP_021339963.1\|23630_24053_+\|glyoxalase/bleomycin-resistance/extradiol-dioxygenase-family-protein	unknown	unknown	gnl\|CDD\|225356
NZ_CP012968.1\|WP_021339960.1\|20795_21257_+\|tRNA-(adenosine(37)-N6)-threonylcarbamoyltransferase-complex-ATPase-subunit-type-1-TsaE	unknown	unknown	gnl\|CDD\|223873
NZ_CP012968.1\|WP_002507128.1\|21872_22337_+\|ribosomal-protein-S18-alanine-N-acetyltransferase	unknown	unknown	gnl\|CDD\|273701
NZ_CP012968.1\|WP_002507134.1\|27424_28516_+\|YeeE/YedE-family-protein	unknown	unknown	gnl\|CDD\|377230
NZ_CP012968.1\|WP_162492973.1\|26558_27206_+\|redox-sensing-transcriptional-repressor-Rex	unknown	unknown	gnl\|CDD\|235486

Protein	Function_ID	Function_description	E-value
NZ_CP012968.1\|WP_071561883.1\|15127_16147_-\|ketol-acid-reductoisomerase	gnl\|CDD\|235491	PRK05479, PRK05479, ketol-acid reductoisomerase; Provisional.	0
NZ_CP012968.1\|WP_002507118.1\|10434_11010_-\|3-isopropylmalate-dehydratase-small-subunit	gnl\|CDD\|179314	PRK01641, leuD, 3-isopropylmalate dehydratase small subunit.	2.32276e-118
NZ_CP012968.1\|WP_002507123.1\|16183_16657_-\|acetolactate-synthase-small-subunit	gnl\|CDD\|183365	PRK11895, ilvH, acetolactate synthase 3 regulatory subunit; Reviewed.	1.96309e-29
NZ_CP012968.1\|WP_021339958.1\|16653_18444_-\|biosynthetic-type-acetolactate-synthase-large-subunit	gnl\|CDD\|180919	PRK07282, PRK07282, acetolactate synthase large subunit.	0
NZ_CP012968.1\|WP_021339961.1\|21237_21900_+\|tRNA-(adenosine(37)-N6)-threonylcarbamoyltransferase-complex-dimerization-subunit-type-1-TsaB	gnl\|CDD\|274750	TIGR03725, T6A_YeaZ, tRNA threonylcarbamoyl adenosine modification protein YeaZ. This family describes a protein family, YeaZ, now associated with the threonylcarbamoyl adenosine (t6A) tRNA modification. Members of this family may occur as fusions with ygjD (previously gcp) or the ribosomal protein N-acetyltransferase rimI, and is frequently encoded next to rimI. [Protein synthesis, tRNA and rRNA base modification].	2.99277e-63
NZ_CP012968.1\|WP_021339966.1\|28910_29873_+\|LacI-family-transcriptional-regulator	gnl\|CDD\|380484	cd01542, PBP1_TreR-like, ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of TreR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type 1 periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type 1 periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.	2.71205e-92
NZ_CP012968.1\|WP_064782799.1\|24485_26414_-\|ABC-F-type-ribosomal-protection-protein	gnl\|CDD\|223562	COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only].	0
NZ_CP012968.1\|WP_002507135.1\|28539_28767_+\|sulfurtransferase-TusA-family-protein	gnl\|CDD\|223502	COG0425, SirA, Predicted redox protein, regulator of disulfide bond formation [Posttranslational modification, protein turnover, chaperones].	3.09362e-18
NZ_CP012968.1\|WP_021339959.1\|18456_20145_-\|dihydroxy-acid-dehydratase	gnl\|CDD\|234861	PRK00911, PRK00911, dihydroxy-acid dehydratase; Provisional.	0
NZ_CP012968.1\|WP_021339954.1\|11011_12382_-\|3-isopropylmalate-dehydratase-large-subunit	gnl\|CDD\|235490	PRK05478, PRK05478, 3-isopropylmalate dehydratase large subunit.	0
NZ_CP012968.1\|WP_021339956.1\|13436_14972_-\|2-isopropylmalate-synthase	gnl\|CDD\|234864	PRK00915, PRK00915, 2-isopropylmalate synthase; Validated.	0
NZ_CP012968.1\|WP_021339962.1\|22329_23358_+\|tRNA-(adenosine(37)-N6)-threonylcarbamoyltransferase-complex-transferase-subunit-TsaD	gnl\|CDD\|236585	PRK09604, PRK09604, tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD.	0
NZ_CP012968.1\|WP_064782798.1\|12399_13440_-\|3-isopropylmalate-dehydrogenase	gnl\|CDD\|234832	PRK00772, PRK00772, 3-isopropylmalate dehydrogenase; Provisional.	0
NZ_CP012968.1\|WP_021339963.1\|23630_24053_+\|glyoxalase/bleomycin-resistance/extradiol-dioxygenase-family-protein	gnl\|CDD\|225356	COG2764, PhnB, Uncharacterized protein conserved in bacteria [Function unknown].	1.21626e-27
NZ_CP012968.1\|WP_021339960.1\|20795_21257_+\|tRNA-(adenosine(37)-N6)-threonylcarbamoyltransferase-complex-ATPase-subunit-type-1-TsaE	gnl\|CDD\|223873	COG0802, COG0802, Predicted ATPase or kinase [General function prediction only].	5.15544e-58
NZ_CP012968.1\|WP_002507128.1\|21872_22337_+\|ribosomal-protein-S18-alanine-N-acetyltransferase	gnl\|CDD\|273701	TIGR01575, rimI, ribosomal-protein-alanine acetyltransferase. Members of this model belong to the GCN5-related N-acetyltransferase (GNAT) superfamily. This model covers prokarotes and the archaea. The seed contains a characterized accession for Gram negative E. coli. An untraceable characterized accession (PIR\|S66013) for Gram positive B. subtilis scores well (205.0) in the full alignment. Characterized members are lacking in the archaea. Noise cutoff (72.4) was set to exclude M. loti paralog of rimI. Trusted cutoff (80.0) was set at next highest scoring member in the mini-database. [Protein synthesis, Ribosomal proteins: synthesis and modification].	3.69914e-31
NZ_CP012968.1\|WP_002507134.1\|27424_28516_+\|YeeE/YedE-family-protein	gnl\|CDD\|377230	pfam04143, Sulf_transp, Sulphur transport. This is an integral membrane protein. It is predicted to have a function in the transport of sulphur-containing molecules. It contains several conserved glycines and an invariant cysteine that is probably an important functional residue.	4.7433e-114
NZ_CP012968.1\|WP_162492973.1\|26558_27206_+\|redox-sensing-transcriptional-repressor-Rex	gnl\|CDD\|235486	PRK05472, PRK05472, redox-sensing transcriptional repressor Rex; Provisional.	1.37703e-104

>NZ_CP012968.1|WP_021339959.1|18456_20145_-|dihydroxy-acid-dehydratase
MRSDMIKKGDQQAPARSLLHATGALEKPTDMNKPFVAICNSYIDIVPGHVHLRELADIAKEAIREAGAIPFEFDTIGVDDGIAMGHIGMRYSLPSREIIADSAETVINAHWFDGVFYIPNCDKITPGMILASVRTNVPAIFCSGGPMKAGLSSEGKALTLSSMFEAVGAFKDGSISKDEFLDMEQNACPTCGSCSGMFTANSMNCLMEVLGLSLPYNGTALAVSDQRREMIREAAFKLVDNIKNDIKPRDIVTSEAIDDAFALDMAMGGSTNTVLHTLAIANEAGIDYDLTRINEIAKKTPYLSKIAPSSSYSMHDVHEAGGVPAIINELFKREGTLHPDRITATGKTLRENNEGKEILNSDVIRHLDNPYDKQGGLSILYGNLAPNGAVIKVGGVDPSIKVFKGKAICFDSHDDAVEAIDNHVVREGHVVVIRYEGPKGGPGMPEMLAPTSSIVGRGLGKDVALITDGRFSGATRGIAVGHISPEAASGGPIGLIKDGDEITIDLTNRTLNVEVSNETLNDRKEDVKPFKAKVKTGYLARYTALVTSANTGGVMQVPENLI
>NZ_CP012968.1|WP_021339958.1|16653_18444_-|biosynthetic-type-acetolactate-synthase-large-subunit
MSKHTETLEIEKSENFESLEAVEPIEPEVKLEQETIDEMRSGSELLVESLANESVDFIFGYPGGAVLPLYDTLYDGRIKHILARHEQGATHAAEGYARVSGNTGVVVVTSGPGATNAITGIADAYSDSLPLVVITGQVATPGIGKDAFQEADLLSMTTPITKHNYQVKNVQDIPKIIHEAFHIANTGRKGPVVIDFPKDMGVLSTNAQVTNELELPGYTIPNKPKKDDIQKLRDFLKSAKKPLVLSGAGINHAKANDLFTEFVSRHQLPVVSTLLGLGAIPYEHPLFLGMGGMHGSYASNMALTECDLLINFGSRFDDRLASNPDEFAPNAKIVHVDIDPSEINKIIKVDLGIVADCKATLEFLLDFDSYSIRHEDWLETCNENKTQQPFAYSDDEDGVFSKPQRAIEYIGEITNGDAIVTTDVGQHQMWVAQYYPFKNHGQLVTSGGLGTMGFGIPAAIGAKLAKPDKPVVAFVGDGGFQMTNQEMGILEEYGIDIKIVIVNNGTLGMVKQWQDKFFNKRFSHSVFNGQPDFIKLSEAYNVKAYLIDDPTHLEQKLDEAFQHDGPALIDIRISPVEIVSPMVPSGKANHEMEGLL
>NZ_CP012968.1|WP_002507123.1|16183_16657_-|acetolactate-synthase-small-subunit
MRRTFRTKVRDKAGTLNRLTSIFVRRQFNIVNLSATPTLEEGISNITFVAEIPDTDVLRTLLQQLEKQINIIEVEDITDTNTYNRELVLVKLQTPNNHQELQNLIKPYDALVSILKNEETYTYLQASGPQYTMDNLLDDLSSYKIEQVSRTGSAGII
>NZ_CP012968.1|WP_071561883.1|15127_16147_-|ketol-acid-reductoisomerase
MEDYIMTTVYYDETVKKDALQGKKVAVLGYGSQGHAHAQNLKDNGYDVIIGIRPGRSFDKAKDDGFEVYPVNEAAKQADVIMVLLPDEAQGKIYKEEIEPNLEANNALVFAHGFNIHFDVINPPENVDVFLVAPKGPGHLVRRTFAEGSAVPALFAVEQDASGEATDLALSYAKGIGATRAGVLETSFKEETETDLFGEQAVLCGGTTKLIQTGFETLVEAGYQPEIAYFEVLHEMKLIVDLLYEGGMENMRYSISNTAEFGDYVSGPRIITPDVKDNMKAVLEDIQQGKFSDRFIKDNENNFEEFHKLREEQHGHQIEAVGKELREMMPFIKSKSIEK
>NZ_CP012968.1|WP_021339956.1|13436_14972_-|2-isopropylmalate-synthase
MSSHIQIFDTTLRDGEQTPGVNFSFDERLKIANQLEKWGVDIIEAGFPASSNGSFKSVEAISKALTTTAVCGLARCVKKDIDAVYEATKEAAKPRIHVFIATSPIHRDSKLMMSKEEVLASITEHVSYAKKYFDLVQFSPEDATRTELPFLIECVQTAVDAGASVINVPDTVGFSYPSEYGQIFKTLQESIKTDHEVIYSAHCHDDLGLAVANSMAAIENGAKRIEGTLNGIGERAGNAALEEVALGLYVRQDHYGNQSRINLEETKQTSDLIARFAGIRVPRNKAIVGQNAFSHESGIHQDGIIKNPETYEIMTPQLVGVKTTELPLGKLSGKHAFAEKLINLGYDVEPEEQKVLFKQFKTIADKKKAVTDRDIHALIQGTEHEQNAIYQVETLQLQFVSNGLQSAVVVIKDKDGNTYQDSSIGTGSIVAVYNAIDRIFDLNTELIEYRIDSVTEGTDAQAEVHVQIKIDNQIVTGVGIDHDILLASCKSYVEAHAKYAANSATEEGIHS
>NZ_CP012968.1|WP_064782798.1|12399_13440_-|3-isopropylmalate-dehydrogenase
MSYKIVALPGDGIGPEIMKGSLEILAQLSQVFNFNYDLESHDFGGVAIDHHGKPLPESTLNACQNADAILLGAVGGSKWTDPNNRPEQGLLGIRKALGLFANIRPTTVTNGTSHLSPIKEERVAGTDFILVRELTGGIYFGEPKKLGDDDALDSLTYTRSEIERIARVGFDLAQKRNKKLTSVDKENVLSSSKLWRRVINEVSQDYPEVEVNHLLVDACAMHLITNPSQFDVIVTENLFGDILSDEASVIPGSLGLSPSASFSEQGPRLYEPIHGSAPDIANQDIANPFGMLLSVVMCLRESLNEPQAAEKLETVIYQLIKEGKTTRDLNGNYNTSDIINFVKENL
>NZ_CP012968.1|WP_021339954.1|11011_12382_-|3-isopropylmalate-dehydratase-large-subunit
MGKTLFDKVWNKHVLTGKEGDPQLLYIDLHLIHEVTSPQAFEGLRLQNRQLRRPDLTYATLDHNVPTVDIFNIKDEIANKQITTLQNNAKEFGVHIFDMGSDEQGIVHMVGPETGLTQPGKTIVCGDSHTATHGAFGAIAFGIGTSEVEHVFATQSLWQTKPKNLKIDVTGKLPTGVYAKDIILHLISQYGVDFGTGYALEFSGEAIRSLSMEARMTICNMAIEAGAKYGMMEPDETTFEYVKGRPYATNFDNSVDEWRELYTDDDAEFDRVIEMDVSDLEPQVTWGTSPEMGVSFSTPFPEIEDVNDERAYNYMDLKPGQKAEDIDLGYVFLGSCTNARLSDLVEASHIVKGNQVHPNITAIVVPGSRTVKKEAEKIGLDKIFKEAGFDWREPGCSMCLGMNPDQVPNGVHCASTSNRNFEGRQGKGARTHLVSPAMAAAAAINGKFVDVRKVVV
>NZ_CP012968.1|WP_002507118.1|10434_11010_-|3-isopropylmalate-dehydratase-small-subunit
MEIKPITTYTGKVVPLFHDNIDTDQIIPKVHLKRISKSGFGPFAFDEWRYLDDGSDNPDFNPNKPEYKDASILITGDNFGCGSSREHAAWAIKDYGFDIIIAGSYSDIFYMNCTKNAMLPIVLDEEARKHLAQSESITVDLPNQTVSSPDKIFTFDIDETWKNKLVKGLDDVAVTLQYEDEIKSYERAKNF
>NZ_CP012968.1|WP_021339960.1|20795_21257_+|tRNA-(adenosine(37)-N6)-threonylcarbamoyltransferase-complex-ATPase-subunit-type-1-TsaE
MIKIKDLDGMAVFATTLAKYLSAGDLVLLNGDLGAGKTTLSQFIGKALGVKRNINSPTFNIIKSYQGSNLRLHHMDCYRLEDSEEDLGFNEYFEDEAVILIEWSQFISEFLPPSSLSINITTLNESERNIELEAQGVHYAKIKEEVERELSVD
>NZ_CP012968.1|WP_021339961.1|21237_21900_+|tRNA-(adenosine(37)-N6)-threonylcarbamoyltransferase-complex-dimerization-subunit-type-1-TsaB
MNYLLIDTSNQPLSVALMQDDKVLSELNSNEKVNHSVQLMPAIEQVIAESKVLKENIDVIVVAQGPGSYTGLRIGVTVAKTLAYALNAELYGVSSLKALAATIKEDTRLIVPVFDARREAVYTGVYQYEENQLVQVEQDQYLPIEELLDLLHKTGQSYVFVGTDTENLEELLDSTCVANVPLAKNMKPLIETAENIHQFTPNYIKISEAERNWLNQQNKS
>NZ_CP012968.1|WP_002507128.1|21872_22337_+|ribosomal-protein-S18-alanine-N-acetyltransferase
MVKPTEQELNIRLMNTKDVPQVFDIERNSFNDSSWSIDAFYHEVEQNEFANYFIIEFNEKIIGYIGLWIVIDQAQITTVAIDNEYRGYGLGQLLLKYVMNFVREKCEMMSLEVRVDNDIAQHVYTNLGFKYGGKRKNYYGEGEDALVMWVNFNE
>NZ_CP012968.1|WP_021339962.1|22329_23358_+|tRNA-(adenosine(37)-N6)-threonylcarbamoyltransferase-complex-transferase-subunit-TsaD
MSEATLVLAIESSCDETSVSIIKNGTEILSNIVLSQIESHKRFGGVVPEVASRHHVEGITTTIDESLVKANVTMHDIDAVAVTQGPGLIGALLVGINAAKALAFAYDKPLIPVHHIAGHIYANHLETPLQFPLMALIVSGGHTELVYMKDHLSFEVIGETRDDAVGEAYDKVARTIGLSYPGGPQVDRLAAEGKDNYQFPRVWLEKDSYDFSFSGLKSAVINKLHNLKQKDEEINKADVATSFQNSVVEVLVGKAISACEHYDVKQLIVAGGVASNKGLRANLAEACEAHNITLCIPSPSLCTDNAAMIGSAGHYLYQAGVTADMTLNGFNSMDIEQFSVKY
>NZ_CP012968.1|WP_021339963.1|23630_24053_+|glyoxalase/bleomycin-resistance/extradiol-dioxygenase-family-protein
MKSVQYFNFQNSLAALNFYEKHLGATDIQRVGGDHEMFADMPEEYDIDKNFTMNASFKILGETFYCSDTMKNKKIDNSGAIVAFTFDYSNEADKQQAKAFFNKAIEGGCEATMPLDKTEWSELYGMFNDPFGVTWMINAE
>NZ_CP012968.1|WP_064782799.1|24485_26414_-|ABC-F-type-ribosomal-protection-protein
MILLQLNDLTKSFDGEDIFNNVDFEVKTGERIGIVGRNGAGKSTLMKIIAGVETYDSGQVSKSKNLKLGYLTQQMTLNTNQTVFDEMSKPFESMKKLELEMKFETDWLAQHADEYDTESYKTHIDRYESLSNQFEQQEGYQYESKIKTVLHGLNFSEADFNRPINDFSGGQKTRLSLAQMLLSEPDLLLLDEPTNHLDMETTQWLESYLNYFKGAIVIISHDRYFLDKIVNQIYDVALGDVQHYVGNYGQFIEQRDKYYEKRMQEYESQQAEIKKLETFVEKNIARASTTGMAKSRRKMLKKMERVNKPMIDAKSANIQFDFDRNTGNDVFHIKNLEIGYEEAITKGINIEATKGDHIAIIGPNGIGKSTLIKTVAGLQQKISGEITTGANLKVGYYDQKQAEFKSNKTILDYLWDQYPTMNEKDIRAVLGRFLFVQDDVKKIINDLSGGEKARLQLALLMLERNNVLILDEPTNHLDIDSKEMLEQALSDFKGTILFVSHDRYFINELANKVYDLDTTGGTMYLGDYQYYIEKLEEKAAIQAKKELDNPTKTEVSASQNHNYVDQKQQKREQRQVERKIEQCETNIEIYEQEINNINEQLTQPDVYSNPEKANDLAIEKEIAEQKLEQVMDEWAELQELLI
>NZ_CP012968.1|WP_162492973.1|26558_27206_+|redox-sensing-transcriptional-repressor-Rex
MVLANQSEKIPRATLKRLPLYYRFVNTLKSKGIDRVNSKTISEGLNIDSATIRRDFSYFGELGKKGYGYNIDSLLHFFKNEISENDEIKIAIVGVGNLGKALITYNFSIHDEMTITEAFDIRDEIIGTQIGKVTVSPFDKITDILAQEHIDVVILTTPEEVAQHVADTLVKTGVKGILNFTPSRVLTPSDVQVHHIDLGIELQSLLFFMKNYSNK
>NZ_CP012968.1|WP_002507134.1|27424_28516_+|YeeE/YedE-family-protein
MTWLVISGLIVGALLGFVMQRTRFCLAGGFRDMYVQKSNKMFYALLIAISVQSIGLLILTSTGLVEIPESTYPIIGTVIGSFIFGIGIILSGGCATGTWYRAGEGLIGSWMALIAYGFTAAATKFGLLLPLMNGVNKPTNVNSSMAQTTGIPTWVWVALLTIITILLVVKTLRKPKPKFAIPKLKQKYTGIRHYLFEKKYHPFVAAIAVGLIALIAWPVSESTGRMYGLGITTPSANIVQFFVTGDLKLIDWGVFLVLGIFVGSYIAAKGAKEFKWRMPDKKTIRNSVIGGVCMGFGASVAGGCSIGNGLVETATMSWKGWIALASMILGAWFMSYFIFIKPMKKAQRQQTSENTISTQTQTT
>NZ_CP012968.1|WP_002507135.1|28539_28767_+|sulfurtransferase-TusA-family-protein
MVHELGTVGMVCPFPLIEAQKKMDTMNNGEELKIDFDCTQATEALPNWAAEKGYPITNYEQLDDASWTITIQKAE
>NZ_CP012968.1|WP_021339966.1|28910_29873_+|LacI-family-transcriptional-regulator
MKNISDIAKIAGVSKSTVSRYLNNGSVSLKTKQKLDKIIQENDYQPNQFAQSLRAHRTNMIGAIIPRMNSYAVDETIKGVKTVCDDLNYRLLLNYTNIDTELEIDALETFYRSKVDGIILMATEITDRHIEVINKIDVPVIIVGQEHKDLHCIIHNDFHAGYMVGEGLGLKGFKNIQFFGVTETDVAVGIHRKKGLISGLAKYNVKPHISQTSFNYNEAMIDVSKELQTQPNYDAVVGATDSIALAVHKITSEDTTQNGDKFIVGFGGDPVTEIVSPSIHTVNYHFEYAGEVAMSKLNQLIQHQPIEQRISIDVGLSFKN

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Crispr_ID: NZ_CP012968_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP012968_2

2037451-2037593

Orphan

Consensus_repeat	Method
CATCAGAAGCTTCAAACAACAAT	CRISPRCasFinder

2 spacers

The CRISPR arrays of NZ_CP012968_2

>merge|NZ_CP012968|2|2037451-2037593|CRISPRCasFinder
CTACAGAATCAACAAACACAAATAGTTCTAATGAAGGACAAGCTACACAACAAGAAGCGGCACCTTCATCAGAAGCTTCAAACAACAATGCATCATCAAACAACAATAACAATGCGAGCACATCAGAAGCTTCAAATAACAAT

>NZ_CP012968|2|2|2037451-2037593|CRISPRCasFinder
CTACAGAATCAACAAACACAAAT	AGTTCTAATGAAGGACAAGCTACACAACAAGAAGCGGCACCTT
CATCAGAAGCTTCAAACAACAAT	GCATCATCAAACAACAATAACAATGCGAGCA
CATCAGAAGCTTCAAATAACAAT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP012968.1\|WP_021338890.1\|2041911_2042430_+\|TetR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224228
NZ_CP012968.1\|WP_046466034.1\|2025948_2027469_+\|aldehyde-dehydrogenase	unknown	unknown	gnl\|CDD\|143434
NZ_CP012968.1\|WP_046466031.1\|2043070_2044006_+\|2-dehydropantoate-2-reductase	unknown	unknown	gnl\|CDD\|235821
NZ_CP012968.1\|WP_021338888.1\|2045895_2047116_-\|NADH-dependent-flavin-oxidoreductase	unknown	unknown	gnl\|CDD\|240086
NZ_CP012968.1\|WP_002506480.1\|2038168_2038915_+\|glycerophosphoryl-diester-phosphodiesterase	unknown	unknown	gnl\|CDD\|176505
NZ_CP012968.1\|WP_064783380.1\|2025079_2025814_+\|LPXTG-cell-wall-anchor-domain-containing-protein	unknown	unknown	gnl\|CDD\|375438
NZ_CP012968.1\|WP_046466030.1\|2044097_2045741_+\|alpha-keto-acid-decarboxylase-family-protein	unknown	unknown	gnl\|CDD\|226470
NZ_CP012968.1\|WP_064783378.1\|2019047_2019896_+\|pantoate--beta-alanine-ligase	unknown	unknown	gnl\|CDD\|234741
NZ_CP012968.1\|WP_002506471.1\|2020157_2021645_+\|malate-dehydrogenase-(quinone)	unknown	unknown	gnl\|CDD\|183983
NZ_CP012968.1\|WP_064783379.1\|2022029_2024975_+\|YSIRK-type-signal-peptide-containing-protein	unknown	unknown	gnl\|CDD\|380149
NZ_CP012968.1\|WP_002506490.1\|2048449_2048782_+\|glycine-cleavage-system-protein-H	unknown	unknown	gnl\|CDD\|223583
NZ_CP012968.1\|WP_002511636.1\|2042510_2042969_+\|winged-helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224759
NZ_CP012968.1\|WP_021338891.1\|2040848_2041766_-\|ketopantoate-reductase-family-protein	unknown	unknown	gnl\|CDD\|224805
NZ_CP012968.1\|WP_002506482.1\|2039790_2040735_+\|TDT-family-transporter	unknown	unknown	gnl\|CDD\|187765
NZ_CP012968.1\|WP_002511632.1\|2047419_2048424_+\|LLM-class-flavin-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|274646
NZ_CP012968.1\|WP_002506476.1\|2032947_2034117_+\|YbfB/YjiJ-family-MFS-transporter	unknown	unknown	gnl\|CDD\|340869
NZ_CP012968.1\|WP_064783381.1\|2027682_2032770_+\|YSIRK-type-signal-peptide-containing-protein	unknown	unknown	gnl\|CDD\|375438
NZ_CP012968.1\|WP_162492978.1\|2034357_2035278_+\|tRNA-dihydrouridine-synthase	unknown	unknown	gnl\|CDD\|223120
NZ_CP012968.1\|WP_064783382.1\|2035339_2036545_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|340882
NZ_CP012968.1\|WP_046465783.1\|2018238_2019051_+\|3-methyl-2-oxobutanoate-hydroxymethyltransferase	unknown	unknown	gnl\|CDD\|234723

Protein	Function_ID	Function_description	E-value
NZ_CP012968.1\|WP_021338890.1\|2041911_2042430_+\|TetR-family-transcriptional-regulator	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	1.13976e-11
NZ_CP012968.1\|WP_046466034.1\|2025948_2027469_+\|aldehyde-dehydrogenase	gnl\|CDD\|143434	cd07116, ALDH_ACDHII-AcoD, Ralstonia eutrophus NAD+-dependent acetaldehyde dehydrogenase II-like. Included in this CD is the NAD+-dependent, acetaldehyde dehydrogenase II (AcDHII, AcoD, EC=1.2.1.3) from Ralstonia (Alcaligenes) eutrophus H16 involved in the catabolism of acetoin and ethanol, and similar proteins, such as, the dimeric dihydrolipoamide dehydrogenase of the acetoin dehydrogenase enzyme system of Klebsiella pneumonia. Also included are sequences similar to the NAD+-dependent chloroacetaldehyde dehydrogenases (AldA and AldB) of Xanthobacter autotrophicus GJ10 which are involved in the degradation of 1,2-dichloroethane. These proteins apparently require RpoN factors for expression.	0
NZ_CP012968.1\|WP_046466031.1\|2043070_2044006_+\|2-dehydropantoate-2-reductase	gnl\|CDD\|235821	PRK06522, PRK06522, 2-dehydropantoate 2-reductase; Reviewed.	3.31662e-91
NZ_CP012968.1\|WP_021338888.1\|2045895_2047116_-\|NADH-dependent-flavin-oxidoreductase	gnl\|CDD\|240086	cd04735, OYE_like_4_FMN, Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.	2.10963e-175
NZ_CP012968.1\|WP_002506480.1\|2038168_2038915_+\|glycerophosphoryl-diester-phosphodiesterase	gnl\|CDD\|176505	cd08562, GDPD_EcUgpQ_like, Glycerophosphodiester phosphodiesterase domain in Escherichia coli cytosolic glycerophosphodiester phosphodiesterase UgpQ and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Escherichia coli cytosolic glycerophosphodiester phosphodiesterase (GP-GDE, EC 3.1.4.46), UgpQ, and similar proteins. GP-GDE plays an essential role in the metabolic pathway of E. coli. It catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols, which are major sources of carbon and phosphate. E. coli possesses two major G3P uptake systems: Glp and Ugp, which contain genes coding for two distinct GP-GDEs. UgpQ gene from the E. coli ugp operon codes for a cytosolic phosphodiesterase GlpQ, which is the prototype of this family. Various glycerophosphodiesters, such as glycerophosphocholine (GPC), glycerophosphoethanolanmine (GPE), glycerophosphoglycerol (GPG), glycerophosphoinositol (GPI), and glycerophosphoserine (GPS), can only be hydrolyzed by UgpQ during transport at the inner side of the cytoplasmic membrane to alcohols and G3P, which is a source of phosphate. In contrast to Ca2+-dependent periplasmic phosphodiesterase GlpQ, cytosolic phosphodiesterase UgpQ requires divalent cations, such as Mg2+, Co2+, or Mn2+, for its enzyme activity.	1.66368e-93
NZ_CP012968.1\|WP_064783380.1\|2025079_2025814_+\|LPXTG-cell-wall-anchor-domain-containing-protein	gnl\|CDD\|375438	pfam17936, Big_6, Bacterial Ig domain. This domain is found in a wide variety of extracellular bacterial proteins often in multiple tandem copies.	2.18771e-17
NZ_CP012968.1\|WP_046466030.1\|2044097_2045741_+\|alpha-keto-acid-decarboxylase-family-protein	gnl\|CDD\|226470	COG3961, COG3961, Pyruvate decarboxylase and related thiamine pyrophosphate-requiring enzymes [Carbohydrate transport and metabolism / Coenzyme metabolism / General function prediction only].	0
NZ_CP012968.1\|WP_064783378.1\|2019047_2019896_+\|pantoate--beta-alanine-ligase	gnl\|CDD\|234741	PRK00380, panC, pantoate--beta-alanine ligase; Reviewed.	6.47464e-149
NZ_CP012968.1\|WP_002506471.1\|2020157_2021645_+\|malate-dehydrogenase-(quinone)	gnl\|CDD\|183983	PRK13339, PRK13339, malate:quinone oxidoreductase; Reviewed.	0
NZ_CP012968.1\|WP_064783379.1\|2022029_2024975_+\|YSIRK-type-signal-peptide-containing-protein	gnl\|CDD\|380149	NF012181, MSCRAMM_SdrD, MSCRAMM family adhesin SdrD. Features of this protein family include a YSIRK-type signal peptide at the N-terminus and a variable-length C-terminal region of Ser-Asp (SD) repeats followed by an LPXTG motif for surface immobilization by sortase.	2.93393e-11
NZ_CP012968.1\|WP_002506490.1\|2048449_2048782_+\|glycine-cleavage-system-protein-H	gnl\|CDD\|223583	COG0509, GcvH, Glycine cleavage system H protein (lipoate-binding) [Amino acid transport and metabolism].	1.73454e-28
NZ_CP012968.1\|WP_002511636.1\|2042510_2042969_+\|winged-helix-turn-helix-transcriptional-regulator	gnl\|CDD\|224759	COG1846, MarR, Transcriptional regulators [Transcription].	8.9673e-15
NZ_CP012968.1\|WP_021338891.1\|2040848_2041766_-\|ketopantoate-reductase-family-protein	gnl\|CDD\|224805	COG1893, ApbA, Ketopantoate reductase [Coenzyme metabolism].	5.00225e-22
NZ_CP012968.1\|WP_002506482.1\|2039790_2040735_+\|TDT-family-transporter	gnl\|CDD\|187765	cd09325, TDT_C4-dicarb_trans, C4-dicarboxylate transporters of the Tellurite-resistance/Dicarboxylate Transporter (TDT) family. This subfamily contains bacterial C4-dicarboxylate transporters, which is part of the Tellurite-resistance/Dicarboxylate Transporter (TDT) family. It includes Tellurite resistance protein tehA; the tehA gene encodes an integral membrane protein that has been shown to have efflux activity of quaternary ammonium compounds. TehA protein of Escherichia coli functions as a tellurite-resistance uptake permease.	2.86488e-55
NZ_CP012968.1\|WP_002511632.1\|2047419_2048424_+\|LLM-class-flavin-dependent-oxidoreductase	gnl\|CDD\|274646	TIGR03558, oxido_grp_1, luciferase family oxidoreductase, group 1. The Pfam domain family pfam00296 is named for luciferase-like monooxygenases, but the family also contains several coenzyme F420-dependent enzymes. This protein family represents a well-resolved clade within family pfam00296 and shows no restriction to coenzyme F420-positive species, unlike some other clades within pfam00296. [Unknown function, Enzymes of unknown specificity].	1.10645e-132
NZ_CP012968.1\|WP_002506476.1\|2032947_2034117_+\|YbfB/YjiJ-family-MFS-transporter	gnl\|CDD\|340869	cd06180, MFS_YjiJ, Uncharacterized protein YjiJ and similar proteins of the Major Facilitator Superfamily of transporters. This family is composed of Escherichia coli YjiJ and other uncharacterized proteins. They belong to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	1.90776e-66
NZ_CP012968.1\|WP_064783381.1\|2027682_2032770_+\|YSIRK-type-signal-peptide-containing-protein	gnl\|CDD\|375438	pfam17936, Big_6, Bacterial Ig domain. This domain is found in a wide variety of extracellular bacterial proteins often in multiple tandem copies.	7.15152e-22
NZ_CP012968.1\|WP_162492978.1\|2034357_2035278_+\|tRNA-dihydrouridine-synthase	gnl\|CDD\|223120	COG0042, COG0042, tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis].	1.11165e-88
NZ_CP012968.1\|WP_064783382.1\|2035339_2036545_-\|MFS-transporter	gnl\|CDD\|340882	cd17324, MFS_NepI_like, Purine ribonucleoside efflux pump NepI and similar transporters of the Major Facilitator Superfamily. This family is composed of purine efflux pumps such as Escherichia coli NepI and Bacillus subtilis PbuE, sugar efflux transporters such as Corynebacterium glutamicum arabinose efflux permease, multidrug resistance (MDR) transporters such as Streptomyces lividans chloramphenicol resistance protein (CmlR), and similar proteins. NepI and PbuE are involved in the efflux of purine ribonucleosides such as guanosine, adenosine and inosine, as well as purine bases like guanine, adenine, and hypoxanthine, and purine base analogs. They play a role in the maintenance of cellular purine base pools, as well as in protecting the cells and conferring resistance against toxic purine base analogs such as 6-mercaptopurine. MDR transporters are drug/H+ antiporters (DHA) that mediate the efflux of a variety of drugs and toxic compounds, and confer resistance to these compounds. The NepI-like family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	1.69979e-61
NZ_CP012968.1\|WP_046465783.1\|2018238_2019051_+\|3-methyl-2-oxobutanoate-hydroxymethyltransferase	gnl\|CDD\|234723	PRK00311, panB, 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed.	1.19741e-137

>NZ_CP012968.1|WP_064783382.1|2035339_2036545_-|MFS-transporter
MEDLKNNYVNRGSKAYIKIIVALFISGFTIFSILYSVQPLIPHFTQSFNVSETVASLALSAATLTLAFAMLFFGAISEVIGRKPIMIFSVISVSLLALVQPFITDFNTFLIVRLIQGICLAGLPSIAMAYIGEEISAHSLPEAMGIYISGNAFGGAFGRIFTGFISSIYGYQVGLFSIAVISVIAAILFAFLLPASRHFEKQHFSVKALVLSYSQHLKNIRLLKPFMIGFLLLGYNIAAFNYIGFVLAAKPYQLHDSIISFVYLLFLIGMISSILNAKLRNKLGTLNALKFSILLLIVGIWITLLPFLAFKILGLAFSVYAFFSGHAIASGVVASRAEHHKAQASSLYLLFYYMGSSIGGTLAGIFYGLIQWPGVVFMITAFMIIAFIISLTIKQKTAYKS
>NZ_CP012968.1|WP_162492978.1|2034357_2035278_+|tRNA-dihydrouridine-synthase
MEDVTDVVFRHVVSEAGRPDVFFTEFTNTESFCHPEGVHSVRGRLTFTEDEQPIVAHIWGDKPEHFREMSIGMAEMGFKGIDLNMGCPVPNVATKGKGSGLIQRPETAAEIIQAAKAGGLPVSVKTRLGYSDIDEWRDWLTHVFEQDIANLSIHLRTRKEMSKVDAHWELIGEIKKVRDAIAPDTLLTINGDIPDRKTGLELAEKYGIDGVMIGRGIFQNPYAFEKEPKEHTSEELLGLLRLHLDLFDKYTKEEPRQFKPLRRFFKVYVRGIKGAGELRHQLMSTSTTDEVRTLLDEFEAQMTPIQ
>NZ_CP012968.1|WP_002506476.1|2032947_2034117_+|YbfB/YjiJ-family-MFS-transporter
MQKAYRQLILGMICLFIVMAIGRFAYTPIMPFMQQTGHMDNQSAGLLATINYLGYLIGAIIPIWIVVFSKVTDLKVYLLINIVSTILMGLFDNFTLWIIFRLIAGITSGTVFVLASNVALEALRAANKGRISGMLYSGVGLGIFTSSIFIFLFTTENNWKITWILLGVFALVMGSFVFFGMRQNSNVENETQTLNEKEDKPKVKLNKKFIWGFSIAYFCEGAGYIITGTFLVAIVKSIPEFADYAALSWMFVGLGAIPSTILWSMMAEKLGYSKATNLAFILQIIAVILPVFSESITSLVISSILFGATFLGLTTLFMSKAQTLMFQSNSKINLVASLTVIYSLGQMIAPALSGVLIGESGNYNAALIFASIILCVGLLSSMYSYRVTN
>NZ_CP012968.1|WP_064783381.1|2027682_2032770_+|YSIRK-type-signal-peptide-containing-protein
MKNNHDLTPNRMNKYAIRKLSVGTASLLVGSVLVFGISNDANAAENDLSKDSKALSTNVNEEDNHLVDTEKANSNEQNPVNNFSESHDIHNDNLNTSDSASEQSVVENKPTVNNTAEIDTSNKEREVVVNTTKNKVTDNKENNNNTSNVIEKEIEESKANKTNEENSEIVKTENKMKAAHNFDNSSQKFENRETSDIAEKTTINQSEAQNREDINHEENNTSNKLEAKDEVNTQSENIKPASEHNVPDRNNTESVLNTKESNNAVAKVRKRRSIINRKTSSKAMTEDSAVEALEYSENYTFQTLIFDPESLAKNSVLNSKTIPFEIHSYMTGANSGDRYKINLQLDPIIANHVTRITVNPAGRTSPVQFVRLSNKQGRLTNIWQVNFIRANNGLFGGGEILSQYTASNGVIYLDTTVKNILNSMNNKHDKLNYLIYVKDNSENKKIQTSETSGYFLTAAEREINNIPPAQSTNANNSFKASSGTVQYDPKIGNFGGAIIDQQILKNGIFNYRGKIMDAGLYKQWTYHYQIDPALLPYIGSIELHKQDFRGLYGFDKKYYAANKVATLRVDSKGRGSITHSDLNQLIEFNNALPETVGIRIVIKYNQSPNNILTRNASYDQNGNLISSTTQVKEDFAFYGYFTDRNGGIINNTFGSATYYIQDLDKDGLTDNYEIHNSHSDPFNGDTDRDGKNDGDEVLRYQTSPLVGKPIVNDITTEDTIIRGDVPLDKSAARQKVKILNPNGNVIKQGALNKNGTFSFNVSKLPPGKYKVAIESPNYRNAEVNTFNVIDMKALLKPAIAPVNDQNTNLQVKGVEGSTVVVKDNNNNVIGTVVLGKGETTKSLQLNQPLKAGTVLTATATKNGKTSYASDPVTVTDVTAPIAPTVTEVTSESAQVTGTGEPGSTITVKLPDGSVATGTADNQGNYAIDIPTNVELVGNEELVVTSTDGAGNVSPETRVTVKDTTAPVAPMVNEVTSEGTQVTGTGEAGSTITVNFPDGNTATGTVDNQGNYVIDIPTTVDLVGNEEVVVTSIDGSGNVSPETKITVKDVTAPVAPMVNEVTSEGTQVTGTGEAGSTITVKFPDGNTVTGTADDQGNYAIDIPTNVDLVGNEELVVTSTDGAGNVSPETKVTVTDVTAPEVPTVNQVTSEGTQVTGTGEVGSTITVKFLDGSVATGTADNQGNYVIDIPKNIDLVGNEELVVTSTDSSGNVSPETKVTVTDVTAPVAPTVNEVTSEGTQVTGTGEVGSTITVKFPDGSVATGTADNQGNYVIDIPKNIDLVGNEELVVTSTDGAGNVSSETKVTVKDATAPAVPTINEVTSEDSQVSGTGEPGSTITVKFPDGSVVTGVADDKGNYAIDLPIDKKLKGNEELVVTSTDGAGNVSREAKVKVKDTTAPAAPTVNEVTSESTQVTGTGEPGSTIIVKFPDGSVIIGTVDNQGNYVIDLPVDKKLDGNEELVITSTDSSGNVSRETKVTVKDATAPTVNKVTSGDTKVTGTGEPGSTIIVKFPNGTIVTGRADNQGNYVINIPSIIDLNPGDTIQVSSIDKSGNMSGTTTIIVNNSSVSITKQANDHDKSSNNFDLNSQLGLNGIEGEDGKEHTNLNSNIKHSDDSVNHKSGTDVASKGDVIQTNDEKGTISNMNNDKNNLDKGNNKHVDKLPTTGENENQNKGLFSSLLAMIGAFILIGRRRKNTEEH
>NZ_CP012968.1|WP_046466034.1|2025948_2027469_+|aldehyde-dehydrogenase
MIYTNPNQEDAKYKVKSKYANFIGGKWTEPQEGNYFDNISPVTGESYAKIPKSTQKDVDLAVEAAQKAQVEWGKKSLSERSQLLLDIADRIEENLEYLAVIETFDNGKPVRETLTADLPLVVDHFRYFAGVIRAEEGGISQIDNDTVAYHYKEPLGVIGQIIPWNFPLLMATWKIAPAIVTGNTVVLKPAEQTPVSILHFIEVIEDILPEGVLNIVNGFGNETGEALATHKNINKVAFTGETTTGKIIMKNASDNVIPVTLELGGKSPNVFFKDIMDEDDEFLEKAVEGLVMFALNQGEVCTCPSRALINEDIYEKFIALCIEKVNKIKLGNPLDETTMVGAQTSNEQQEKIKKYLDIGKEEGAEILVGGNVRQENENLENGFYIEPTIFKGDQSMRIFQEEIFGPVLSVATFKTNEEALEMANDTIYGLGAGIWTRNQNTAYRIGRGIQAGRVWVNNYHTYPAHAAFGGYKMSGIGRENHLMMLDHYQQTKNLLVSYDTKPTGLF
>NZ_CP012968.1|WP_064783380.1|2025079_2025814_+|LPXTG-cell-wall-anchor-domain-containing-protein
MTAPETPTVKEVTSEDTQISGTAEPNSEVTVTFPDGTTAMGTTDEEGNYTIDIPENVDLVGGEEITVTSTDKDGNISESTKVIVINKEETPNTGETPNTGETPNTGEMPNTGETPNTGETPNTGETPKTEQTASIGEKSNTNETSSKEETQSKSQNRMSQENSTIEKTNSNSTVNKNTTNSSINKAESKRAHSNKLNSENELPETGQDETRNSTLFGTLIAGLGGLLLLVMRRRKKEEDENKMS
>NZ_CP012968.1|WP_064783379.1|2022029_2024975_+|YSIRK-type-signal-peptide-containing-protein
MKNKQGFLPNKMNKYSIRKFTVGTASLLIGATLVFGVGSEAQAAELDEIKTNDSGSNKGEALDISEIKTIETETQDVEKEPISNANDVKDTEGKEENSDIDTSKVESENTEKVLESQNVVETTKENTNIEHSTDNKNQEINEKATSENNVIEEETPTNEKVESENTETPNINENTDTLKIEEKNDEINTSEPKTTDENKHEMTEQKTKIEEDSQQPTESINEKVQTEQEITLDQTEMENGDNVNDEITPTDQSTADSALIQQLSTTTDKEAEVKTFLNSELSEEETKSIIDQTNINFEEASNEEIKNEILKALAIQLANEQDANRILATPKRTMLRTMAAPTAIATADATNEQVDKSLGYVDNYTFASLIFDPKTLSSQGALDSKEIDFNIDSYMSGSNSGDRYKIDLKLDPIIAKHVTKISVNPANRSNPVEFVRLTDDQGNLTNTWEVNFIRANNGLFGGAEILSQYSAENGKIYLDDTVRNIINEAGDLSNNKLNYQMFVRDSSENKIVRTTESSGYFLTNADSDLIQLQNKISTANSKSYTSSSGSAVFNSDIGNNGGIIIDQQVMKDGIFSYNTAGNKQWSYNYQIDKDLLPYIESAELHTYDYAGLAGFDKIYYASNKVADLTLDTIGNGKITSENLNDLISFNNSLPETVGMRIVLKLNQSVNNILTKEALYDSAGNLISETTKQKEDFTFAGYLTDDGGMLINNTMGTSTLALQDYDKDGLLDRYERQVSLSNAEVLDTDADGKNDGDEVVNYKTSPLVGLPVVADINMADTIVSGSVPLKEGAVSQTAKVINADNQIIGSATVNSDGSFAIVIPSSPAGEYTIAIDSPNYANDEVSKFNIIDNTIVPTPTIDPVDDNDTVIVVHGATGSTVTVTDNHNNVIGTVKIANDTTSGSITLSNPLEAGTVLTSTASENGKISDSSKTITVTDATAPDAPIINTVTSEDTQVSGTAEPGTSVRINFPGGGYTAITTQ
>NZ_CP012968.1|WP_002506471.1|2020157_2021645_+|malate-dehydrogenase-(quinone)
MSESNSKDVILIGAGVLSTTFGTMLKDLAPEWNIKLFERLEKPAIESSNERHNAGTGHAALCELNYTVEQKDGSIDIEKAKEINEQFEISKQFWSHLVKSNQIQDPQEFIRPLPHISFVQGDKNVNFLKRRYEALAPLSMFKGIEYTEDHKKLQEWMPLMMEGRDPEEVVAASKIDEGTDVNFGELTRKMAKNLNEHENAELFYKHEVQDFSRRKDGKWEVKIKDLKTNKVEHHITDYLFIGAGGAAIPMLQKTGIPESKHLGGFPITGEFLVCNNPDVVAKHEVKAYGKEPEGTPPMTVPHLDRRYIQDENSLLFGPFAAIGPKFLKNGSNLDLFKSINPSNIITMLAAAAKNFPLIKYSIQEVLAKKEDRMKELRRFVPDAKDEDWDIMQAGKRVQVIKDTKEHGRGFIQFGTEVVNSKDHSVIALLGESPGASTSVSVALEVIEKNFPDYMAEWEPKLKEIIPSYGKSLIEDYALLKEIRQANNAELGLNNL
>NZ_CP012968.1|WP_064783378.1|2019047_2019896_+|pantoate--beta-alanine-ligase
MTELITTIEEMTEMSKQWIKSNKSVGFVPTMGALHEGHLKMMSQSITENDVTVISVFVNPLQFGPDEDLDAYPRAIESDTIKASSVGVDYIFYPSEKEMYPEQPTIEVKAGRLASVLEGAQRPGHFDGVVTVVNKLFNIIQPERAYFGKKDAQQLAIVEKMVEDFNHAIDIVGVDIVREADGLAKSSRNIYLTSEERAEAPHLYKSLQLAQSLYNQGERSSLKIIEATRDYIQQHTSGDIETVAIYSYPQLVEQHEITDKIFISLAVKFSQARLIDNIIIGD
>NZ_CP012968.1|WP_046465783.1|2018238_2019051_+|3-methyl-2-oxobutanoate-hydroxymethyltransferase
MKTLNQLLDMKQSNDKISMVTAYDYPSAKQAEAAQIDTILVGDSLGMTVLGYDSTVQVTVDDMIHHAKAVRRGAPSTFVIVDVPFGAVGINEQSDLETAVKLYQQTQANAIKAEGAHLTQYIESCSNVGIPVVSHLGLTPQSVGITGYKMQANTKEAAQQLIDDAYNVQQAGAVMLVLEAIPSDLAAKITKNLDIPVIGIGAGKSTDGQVLVYHDLLNYEVNHQAKFVKQYGDFSKGVQALSLYNTEVKSQQFPSDAHTYKKQVMNEVSE
>NZ_CP012968.1|WP_002506480.1|2038168_2038915_+|glycerophosphoryl-diester-phosphodiesterase
MFTVYGHRGLPSKAPENTLASYKEAGNTPGLKWIELDVAITKDEQLILIHDDFLDRTTNMVGEVTQLNYSDIKDTSAGSWFGTEFEAEKLPTFDEVIELANAYNMNLNIELKGVTGPNGTVLSESMIKQVADKLKRLDSELNVLISSFNLVLVKLAEQFIPDYERAVIFKSAAFGDDWRTLLDYCGSKIVNIEDAKLTEARVKKIKNAGYVLNVWTVNKQLRANQLANWGVDGIFTDKADEMIHLERL
>NZ_CP012968.1|WP_002506482.1|2039790_2040735_+|TDT-family-transporter
MFRKFISVIPTAICGLALGISALSNLLYIMDRNVLATIFLIISVIVVGLFILKCIQFPSIVLKELSDRNICATFPTFTMTFLTLLYILYHQLNITWEIIIWLWWFVVILQFVIIGLFIYYHIYLHENERIVPSTSWFVTFVGIGVISETAEDFSPFFGELIVYIATLCFLVLICVVLFKKTWRLYNENQFPMTIIIAAPASLCLNGYLLSVVHTQMFYIITMLIISQLIFIYSLTFIPKLYKLNFRFSFSALTFPWVTTATSLYNLLEIESLPHKVQSVLYFVMIFEVIFAIVTVIYVILGYASFLKKRTIEIK
>NZ_CP012968.1|WP_021338891.1|2040848_2041766_-|ketopantoate-reductase-family-protein
MKILIYGAGVQGQFLAHALNTKDNDITMFARGKTLEHLNQKGLKLQHSLQRKTTNEHITTISTLSEHDIYDVIFVTMKYSDFYNVVPTLAQNKSENIIFIGNNMNPKLLQSTLTQQSNHLKHITFGFLMTGGSREASHTNILRFNAGELKVGNMHGEITFSDKLNSIFKNAKIKLTYEQNFEDWLMSHAALVLPLNMLFILKQNQNTNAQTLTKETIAAFTELHQLLEHKGHTIKPKAQFIIFKNFKGLSNIVLKTVMNIGLINQTQGSFKELEALYNDVKVLNQNTALTTSHLDALFEASKSVS
>NZ_CP012968.1|WP_021338890.1|2041911_2042430_+|TetR-family-transcriptional-regulator
MDKRKEKSQKLIIRSFVELIREKDFDKISMNDIAQHANINRGTIYLNFIDKYDILDHAIDYILGAAVDKCNIYLAESGDNKETLREVMYVIDDKYDILKTLVKKSDLNMLKQTLSKKMRDTINKQNSEITAQFLSSAVVGVIIWWIEESKPCDIDTLVGELSVLLEPHLKHL
>NZ_CP012968.1|WP_002511636.1|2042510_2042969_+|winged-helix-turn-helix-transcriptional-regulator
MESNNNDYENLLFYFAYKTFINTADEIIEAYGLNRQHHRFLFFIEKVPGITIKDLLKSLEISKQGSHATLKKLKDEAYITEQPTETDKRIKALYPTEKGTKLVKELNKAQNDLFQDIQKKVGNDWYAIMEEFASYRTGFQEVKYLKDENKKD
>NZ_CP012968.1|WP_046466031.1|2043070_2044006_+|2-dehydropantoate-2-reductase
MVKIAIAGAGAMGGRVGTQIAEAGYDVTLIDYWTEHITNIQQHGLNIQTEKDTYHINIKAQLPEQIDEQYDLIIILTKAMDSEAMIEALNEANAIKETTAVLTMMNGLGHEERFAKIIPKSQIFLAVTMWTAGLRGTGQILLEGTGTIELQRADGGEDYRTEAINTIFNNAKLNSTISDNVFESIWSKATLNSVLNPLCTILDKTINQFSLYEQARQMVIPIIEEIVAVAHARGLELNFENLINKIEAAYPIESQGLHYPSMHQDLYKGRLTEIDYLNGQIVTYGKACGVATPHNEMLTHMIHQLELTYKK
>NZ_CP012968.1|WP_046466030.1|2044097_2045741_+|alpha-keto-acid-decarboxylase-family-protein
MKKRIGQYLMDCISAVGVDKVFGVPGDFNLTFLDDIISRDDMDWVGNTNELNASYAADGYARLKGISAMVTTFGVGELSAVNGIAGAYAERVPVIQITGAPTRAVENAGKYVHHSLGEGNFDDYRKMYEPITTTQAYLTPENAQSEIPRVIEAALTEKRPVHIHLPIDVASVEIEVDQPFEVPQHQGMDVAKYVNMIKEKLQSADKPVIITGHEINSFDLHEKLEQFVNQTQIPVAQLSLGKGSFNEENPYYMGIYDGSLAEEDIRNYVDQSDAILNIGAKLTDSATAGYSYQFDIDDVVMINHRHFKMNETKDMEVSLIDLLDGLNTINYVNGATFPQFQRPKEKQYDLNGDPLSQATYFKMMQDFIKQDDVILAEQGTSFFGAYDLALYSNNKFIGQPLWGSIGYTLPATLGTQMANTQRRNLLLIGDGSLQLTVQEMSSMIRAQIKPIIFVINNDGYTVERKIHGENASYNDIKMWDYKLLPTVFGGKDEVIVHDVTTSETLQNTFLEIEAQPDMMHLVEVKMAVHDAPHKLNAIGQAFAKQNG
>NZ_CP012968.1|WP_021338888.1|2045895_2047116_-|NADH-dependent-flavin-oxidoreductase
MKTHYQALFEPLTLPNGVVFNNRFVLSPMTTNSSTQDGHITEQDLRYAQRRAHAAPLQVTGAAYIEPYGQLFEYGFSITDDSCIPGLKKLATAMKKNGNKAILQLTHAGRFSNQAILNYGQVYGPSAMSLNSPIQHDVLAMSIDKITSVTHQYAEATSRAIQAGFDGVEVSAAQRLLIQTFFSTFSNQRTDQYGNQSLDNRARIGLEILAAVQKVIDKEAPPQFILGYRATPEETRGSDVGYTIDEFNEHLDWVLDTANIQYLAIASWGRQIYQNKVRSDGKHTGKYVNAVVHDYLDGRIPVIASGGINSPESALDALQHADMVGMSSPFVTEPDFVLKLQEDRPEDIDLHVTIDDIDELAIPYAAFKDIVKMMDYGEGLKKETRDELRKLETNYDQVDYEAIEKD
>NZ_CP012968.1|WP_002511632.1|2047419_2048424_+|LLM-class-flavin-dependent-oxidoreductase
MVQLNILDYAVIDEGKSAQDALQDTVRLAQLADKLGYKRFWMTEHHNVPAFACSSPELLMMQLLAKTKQIRLGSGGVMLPHYSPFKVAENFRLLEAFYPRRVDLGIGNNSGTPSVKQAMNETKTHFLDYEQSITDVRHYLTEREPEQRFKQVFAQPRVTTVPQMWLLSTSVPSAQMAGRQGMGYTLGTFLLPNEKAIKKAESSVQAYREAFKPTALNMKPTVMLTTFVAVADTASEADALAQSLDVWLLGKQQFAEFERLPSIETAQSYSRSERDERLITQSRARIIVGTKESAKKQIDTMIQTFNADEVMVVPLIPDIAQRCRTIELLAQIYL
>NZ_CP012968.1|WP_002506490.1|2048449_2048782_+|glycine-cleavage-system-protein-H
MKKLANYLWVEKVGEQYVYSMTPELQDDVGTVGYVEFMGGDDIKVDDEIVSIEASKTVLDVQSPLAGKIVARNTKAEDEPTLLNSEKAEENWLVKLENVDEAAFNALPEA

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP012968_2	2.2\|2037540\|31\|NZ_CP012968\|CRISPRCasFinder	2037540-2037570	31	NZ_CP043499	Rhizobium grahamii strain BG7 plasmid unnamed, complete sequence	587002-587032	8	0.742

1. spacer 2.2|2037540|31|NZ_CP012968|CRISPRCasFinder matches to NZ_CP043499 (Rhizobium grahamii strain BG7 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.742

gcatcatcaaacaacaataacaatgcgagca	CRISPR spacer
ggctcatcaaacaacaatgacaatggtcggg	Protospacer
*  ***************.******   * .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

163128 : 185250

Staphylococcus_phage(94.44%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_021339023.1\|163128_164133_+	o-succinylbenzoate synthase	A0A2H4PQM0	Staphylococcus_phage	2.9e-90	50.2
WP_002507269.1\|164129_164366_-	membrane protein insertion efficiency factor YidD	A0A2H4PQM5	Staphylococcus_phage	1.9e-29	79.2
WP_002507270.1\|164428_164905_+	nucleoside triphosphatase YtkD	A0A2H4PQM4	Staphylococcus_phage	1.8e-42	52.9
WP_002507271.1\|164912_165683_+	S9 family peptidase	A0A2H4PQM6	Staphylococcus_phage	2.5e-97	69.4
WP_021339026.1\|165736_167326_-	phosphoenolpyruvate carboxykinase (ATP)	A0A2H4PQN1	Staphylococcus_phage	6.3e-257	81.1
WP_002507273.1\|167714_168911_+	methionine adenosyltransferase	A0A2H4PQS6	Staphylococcus_phage	7.5e-194	86.1
WP_002507274.1\|169006_169915_+	NERD domain-containing protein	A0A2H4PQQ8	Staphylococcus_phage	1.3e-100	77.0
WP_002507275.1\|170108_170945_+	aldo/keto reductase	A0A2H4PQR8	Staphylococcus_phage	2.5e-111	68.2
WP_021339027.1\|171138_171495_-	CrcB family protein	NA	NA	NA	NA
WP_021339028.1\|171491_171857_-	fluoride efflux transporter CrcB	A0A2H4PQR0	Staphylococcus_phage	5.1e-37	62.8
WP_064782819.1\|171924_172230_-	hypothetical protein	NA	NA	NA	NA
WP_002507279.1\|172513_173227_+	transaldolase	H8ZNI7	Synechococcus_phage	5.0e-20	37.7
WP_021339029.1\|173423_174059_+	pentapeptide repeat-containing protein	NA	NA	NA	NA
WP_002507281.1\|174185_174635_+	hypothetical protein	A0A2H4PQT8	Staphylococcus_phage	5.2e-23	52.2
WP_021339030.1\|174645_175068_-	hypothetical protein	NA	NA	NA	NA
WP_002507285.1\|175770_175995_+	hypothetical protein	NA	NA	NA	NA
WP_002507286.1\|176158_177010_+	autolysin	A0A1W6JNR1	Staphylococcus_phage	5.7e-39	43.3
WP_021339033.1\|177640_178567_-	osmoprotectant ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_021339034.1\|178744_180214_+	FAD-dependent oxidoreductase	A0A2H4PQX2	Staphylococcus_phage	1.2e-12	67.3
WP_021339035.1\|180790_181834_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	A0A2H4PQS8	Staphylococcus_phage	6.2e-128	64.1
WP_002507290.1\|181840_182473_+	riboflavin synthase	A0A2H4PQS5	Staphylococcus_phage	1.1e-71	63.8
WP_021339036.1\|182483_183665_+	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	A0A2H4PQS2	Staphylococcus_phage	2.1e-164	70.5
WP_002507292.1\|183677_184136_+	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	8.6e-58	75.7
WP_002507293.1\|184248_185250_-	proline dehydrogenase	A0A2H4PQT6	Staphylococcus_phage	4.7e-125	67.3

DBSCAN-SWA_2

188400 : 195879

Staphylococcus_phage(100.0%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_064782820.1\|188400_188961_-	methyltransferase domain-containing protein	A0A2H4PQV0	Staphylococcus_phage	6.6e-68	64.0
WP_021339041.1\|188957_189911_-	TIGR01212 family radical SAM protein	A0A2H4PQV5	Staphylococcus_phage	2.1e-66	82.6
WP_002507299.1\|190021_191191_+	MFS transporter	A0A2H4PQR6	Staphylococcus_phage	2.4e-165	76.1
WP_064782821.1\|191588_194003_+\|tRNA	leucine--tRNA ligase	A0A2H4PQS0	Staphylococcus_phage	0.0e+00	85.7
WP_002507301.1\|194021_194333_+	rhodanese-like domain-containing protein	A0A2H4PQR9	Staphylococcus_phage	1.6e-34	69.9
WP_002507302.1\|194619_195879_-	NAD(P)/FAD-dependent oxidoreductase	A0A2H4PQX1	Staphylococcus_phage	4.5e-40	77.9

DBSCAN-SWA_3

456801 : 465357

uncultured_Mediterranean_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002507550.1\|456801_457536_+	segregation/condensation protein A	A0A1B1IVW1	uncultured_Mediterranean_phage	1.2e-08	23.5
WP_031265982.1\|457525_458068_+	SMC-Scp complex subunit ScpB	A0A1B1IVT7	uncultured_Mediterranean_phage	1.4e-09	30.2
WP_002507552.1\|458060_458798_+	rRNA pseudouridine synthase	NA	NA	NA	NA
WP_021339222.1\|458931_459657_+	response regulator transcription factor	W8CYM9	Bacillus_phage	3.2e-46	41.3
WP_082920393.1\|459637_461416_+	HAMP domain-containing protein	A0A1V0SGX0	Hokovirus	2.1e-22	26.2
WP_002507555.1\|461840_462386_+	ECF transporter S component	NA	NA	NA	NA
WP_002507556.1\|462667_462916_-	ferredoxin	A0A127AYY7	Bacillus_phage	1.3e-15	49.3
WP_021339221.1\|463025_463991_+	hypothetical protein	NA	NA	NA	NA
WP_002507558.1\|463977_465357_+	ATP-dependent DNA helicase RecQ	M1PGQ0	Moumouvirus	1.6e-59	34.1

DBSCAN-SWA_4

741344 : 823444

Staphylococcus_phage(46.55%)

terminase,protease,head,holin,capsid,portal,tRNA,tail,integrase

attL 778253:778275|attR 819826:819848

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_021338730.1\|741344_742082_-\|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	NA	NA	NA	NA
WP_021338729.1\|742081_742585_-	ribosome maturation factor RimM	NA	NA	NA	NA
WP_002507875.1\|742805_743072_-	30S ribosomal protein S16	NA	NA	NA	NA
WP_064782961.1\|743559_744312_+	3-oxoacyl-ACP reductase	NA	NA	NA	NA
WP_064782962.1\|744338_745652_+	NtaA/DmoA family FMN-dependent monooxygenase	NA	NA	NA	NA
WP_002507878.1\|746181_747549_-	signal recognition particle protein	NA	NA	NA	NA
WP_064782963.1\|747574_747907_-	putative DNA-binding protein	NA	NA	NA	NA
WP_021338725.1\|747893_749138_-	signal recognition particle-docking protein FtsY	NA	NA	NA	NA
WP_021338724.1\|749134_752704_-	chromosome segregation protein SMC	NA	NA	NA	NA
WP_064782964.1\|752856_753531_-	ribonuclease III	A0A0G2Y7P9	Acanthamoeba_polyphaga_mimivirus	1.1e-24	32.0
WP_002507883.1\|753800_754034_-	acyl carrier protein	B2ZXV3	Ralstonia_phage	3.5e-07	42.6
WP_002507884.1\|754283_755018_-	3-oxoacyl-[acyl-carrier-protein] reductase	Q06VL0	Trichoplusia_ni_ascovirus	1.7e-15	29.5
WP_002507885.1\|755010_755937_-	ACP S-malonyltransferase	NA	NA	NA	NA
WP_002507886.1\|755929_756916_-	phosphate acyltransferase PlsX	NA	NA	NA	NA
WP_064782965.1\|757817_759377_+	peptidase M4 family protein	NA	NA	NA	NA
WP_021338720.1\|759889_761935_-	ATP-dependent DNA helicase RecG	NA	NA	NA	NA
WP_002507890.1\|761937_762807_-	L-serine ammonia-lyase, iron-sulfur-dependent, subunit alpha	NA	NA	NA	NA
WP_002507891.1\|762820_763486_-	L-serine ammonia-lyase, iron-sulfur-dependent, subunit beta	A0A2H4PQU8	Staphylococcus_phage	1.4e-08	28.0
WP_064782966.1\|763986_765639_-	DAK2 domain-containing protein	NA	NA	NA	NA
WP_021338719.1\|765653_766025_-	Asp23/Gls24 family envelope stress response protein	NA	NA	NA	NA
WP_002507894.1\|766276_766465_+	50S ribosomal protein L28	NA	NA	NA	NA
WP_046465278.1\|766571_767207_-	thiamine diphosphokinase	NA	NA	NA	NA
WP_021338717.1\|767212_767857_-	ribulose-phosphate 3-epimerase	NA	NA	NA	NA
WP_158649095.1\|768925_769513_-	hypothetical protein	NA	NA	NA	NA
WP_021338714.1\|769549_771598_-	Stk1 family PASTA domain-containing Ser/Thr kinase	M1PCM5	Moumouvirus	3.3e-24	33.2
WP_021338713.1\|771594_772338_-	Stp1/IreP family PP2C-type Ser/Thr phosphatase	NA	NA	NA	NA
WP_002512298.1\|772342_773437_-	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA
WP_064782968.1\|773440_774754_-	16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB	NA	NA	NA	NA
WP_031265888.1\|774750_775683_-\|tRNA	methionyl-tRNA formyltransferase	E3SNR5	Prochlorococcus_phage	4.3e-11	29.1
WP_064782969.1\|775675_776164_-	peptide deformylase	NA	NA	NA	NA
WP_021338709.1\|776421_777114_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_046465253.1\|777305_777500_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
778253:778275	attL	NA	NA	NA	NA
WP_064782970.1\|778429_778837_-	YolD-like family protein	U3PG23	Staphylococcus_phage	6.7e-54	74.4
WP_064782971.1\|778914_779364_-	DUF2335 domain-containing protein	NA	NA	NA	NA
WP_064782972.1\|779353_779581_-	hypothetical protein	NA	NA	NA	NA
WP_102134911.1\|779708_779924_-	hypothetical protein	U3PDY3	Staphylococcus_phage	1.6e-30	80.3
WP_064782973.1\|779893_781153_-	CHAP domain-containing protein	A0A2H4JBD0	uncultured_Caudovirales_phage	1.5e-139	66.8
WP_064782974.1\|781179_781464_-\|holin	phage holin	A0A2H4JAT1	uncultured_Caudovirales_phage	1.7e-35	80.0
WP_064782975.1\|781588_781984_-	hypothetical protein	A0A2H4JB27	uncultured_Caudovirales_phage	2.7e-60	95.4
WP_064782976.1\|781967_782408_-	hypothetical protein	A0A2H4JD88	uncultured_Caudovirales_phage	4.0e-76	98.6
WP_064782977.1\|782575_785053_-	hypothetical protein	U3PDY0	Staphylococcus_phage	0.0e+00	92.5
WP_064782978.1\|785094_786747_-	hypothetical protein	P89922	Bacillus_phage	1.9e-22	42.2
WP_064783579.1\|786757_787579_-\|tail	phage tail family protein	U3PDX5	Staphylococcus_phage	4.1e-119	77.2
WP_064782979.1\|787606_793273_-	peptidoglycan DD-metalloendopeptidase family protein	U3PJ20	Staphylococcus_phage	0.0e+00	72.9
WP_046466093.1\|793473_794004_-	hypothetical protein	A0A1W6JPW8	Staphylococcus_phage	7.2e-24	41.1
WP_064782980.1\|794076_794676_-	hypothetical protein	A0A2H4JA75	uncultured_Caudovirales_phage	7.0e-92	85.4
WP_064782981.1\|794679_795096_-	hypothetical protein	U3PBL6	Staphylococcus_phage	8.1e-63	90.7
WP_064782982.1\|795085_795505_-	hypothetical protein	U3PDX1	Staphylococcus_phage	2.1e-63	86.2
WP_064782983.1\|795501_795825_-\|head,tail	head-tail adaptor protein	U3PJ15	Staphylococcus_phage	6.5e-52	95.3
WP_064782984.1\|795794_796124_-\|head,tail	phage gp6-like head-tail connector protein	A0A2H4J2S1	uncultured_Caudovirales_phage	3.2e-54	95.4
WP_082920394.1\|796315_797239_-\|capsid	phage major capsid protein	U3PBL1	Staphylococcus_phage	6.4e-169	99.3
WP_082920395.1\|797220_797649_-	hypothetical protein	U3PBL1	Staphylococcus_phage	7.9e-21	78.9
WP_064782985.1\|797696_798254_-\|head,protease	HK97 family phage prohead protease	A0A2H4J4A7	uncultured_Caudovirales_phage	1.4e-97	95.1
WP_082920406.1\|798234_799380_-\|portal	phage portal protein	A0A2H4JAR2	uncultured_Caudovirales_phage	1.7e-195	89.2
WP_064782986.1\|799465_799654_-	hypothetical protein	U3PG03	Staphylococcus_phage	5.5e-19	90.7
WP_064782987.1\|799666_801418_-\|terminase	terminase large subunit	U3PCW2	Staphylococcus_phage	0.0e+00	92.1
WP_064782988.1\|801410_801881_-\|terminase	phage terminase small subunit P27 family	U3PBK8	Staphylococcus_phage	1.4e-74	88.5
WP_064783581.1\|802047_802392_-	endonuclease	U3PD10	Staphylococcus_phage	7.4e-46	85.1
WP_064782989.1\|802962_803379_-	DUF722 domain-containing protein	I6TJX2	Staphylococcus_virus	1.4e-46	63.8
WP_064782990.1\|803392_803623_-	DUF1514 family protein	A0A2H4JCT1	uncultured_Caudovirales_phage	7.9e-28	84.0
WP_102134912.1\|803619_803754_-	transcriptional regulator	A0A2H4JAX0	uncultured_Caudovirales_phage	9.6e-10	79.5
WP_064782991.1\|803692_804013_-	hypothetical protein	NA	NA	NA	NA
WP_064782992.1\|804048_804471_-	dUTP diphosphatase	A0A1D6Z234	Staphylococcus_phage	2.6e-40	59.0
WP_158649096.1\|804481_804622_-	hypothetical protein	NA	NA	NA	NA
WP_064782993.1\|804611_804836_-	hypothetical protein	A0A2H4JI03	uncultured_Caudovirales_phage	6.6e-19	69.6
WP_064782994.1\|804837_805113_-	hypothetical protein	A0A2H4JG84	uncultured_Caudovirales_phage	2.0e-17	65.8
WP_064782995.1\|805102_805447_-	hypothetical protein	A0A2H4J5L2	uncultured_Caudovirales_phage	1.2e-22	61.5
WP_064782996.1\|805534_805912_-	hypothetical protein	D2IZL0	Enterococcus_phage	9.1e-13	43.2
WP_064782997.1\|805912_806299_-	hypothetical protein	A0A1D6Z256	Staphylococcus_phage	6.9e-16	43.6
WP_064782998.1\|806489_806696_-	hypothetical protein	NA	NA	NA	NA
WP_064783582.1\|806696_807050_-	DUF3310 domain-containing protein	A0A1W6JQB9	Staphylococcus_phage	1.8e-55	88.9
WP_064782999.1\|807422_807803_-	hypothetical protein	A0A2H4J2U6	uncultured_Caudovirales_phage	2.2e-27	60.0
WP_064783000.1\|807814_808009_-	hypothetical protein	NA	NA	NA	NA
WP_064783001.1\|808001_808412_-	RusA family crossover junction endodeoxyribonuclease	D2JGK8	Staphylococcus_phage	1.8e-43	69.2
WP_064783002.1\|808422_808659_-	DUF3269 family protein	U3PDZ9	Staphylococcus_phage	5.3e-35	88.5
WP_064783003.1\|808645_808858_-	hypothetical protein	A0A2H4JHC0	uncultured_Caudovirales_phage	3.5e-30	90.0
WP_064783004.1\|810084_810447_-	hypothetical protein	U3PCZ0	Staphylococcus_phage	4.9e-64	99.2
WP_064783005.1\|810450_811224_-	DnaD domain protein	A9CR67	Staphylococcus_phage	8.8e-87	63.8
WP_064783006.1\|811213_811891_-	hypothetical protein	A0A2H4J972	uncultured_Caudovirales_phage	1.0e-115	87.9
WP_064783007.1\|811904_812330_-	single-stranded DNA-binding protein	A0A2H4JGW9	uncultured_Caudovirales_phage	3.6e-58	85.2
WP_064783008.1\|812329_812947_-	DUF1071 domain-containing protein	A0A2H4JEC9	uncultured_Caudovirales_phage	4.8e-112	99.0
WP_064783009.1\|812939_813164_-	DUF2483 family protein	A1BTZ2	Staphylococcus_virus	6.8e-24	70.3
WP_064783010.1\|813129_813414_-	hypothetical protein	A0A2H4JAZ9	uncultured_Caudovirales_phage	6.6e-40	86.2
WP_064783011.1\|813477_813663_-	hypothetical protein	NA	NA	NA	NA
WP_046465213.1\|813674_813932_-	helix-turn-helix domain-containing protein	M1SVD9	Staphylococcus_phage	1.2e-11	47.5
WP_158649097.1\|814064_814442_+	hypothetical protein	NA	NA	NA	NA
WP_064783013.1\|814503_814686_-	hypothetical protein	NA	NA	NA	NA
WP_158649098.1\|814755_814893_+	hypothetical protein	NA	NA	NA	NA
WP_064783014.1\|815156_815948_-	antirepressor	A0A2H4J5J5	uncultured_Caudovirales_phage	7.0e-132	88.6
WP_064783015.1\|815962_816217_-	helix-turn-helix transcriptional regulator	U3PCY2	Staphylococcus_phage	1.1e-38	92.9
WP_064783016.1\|816412_817051_+	LexA family transcriptional regulator	U3PBN8	Staphylococcus_phage	1.4e-114	98.1
WP_064783017.1\|817104_817728_+	hypothetical protein	A0A2H4J5W8	uncultured_Caudovirales_phage	3.2e-07	70.3
WP_064783018.1\|817779_817995_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_158483916.1\|818104_818281_+	hypothetical protein	NA	NA	NA	NA
WP_064783019.1\|818530_819736_+\|integrase	site-specific integrase	A0A068A216	Staphylococcus_phage	3.3e-149	65.6
WP_046465206.1\|819825_822234_-	primosomal protein N'	NA	NA	NA	NA
819826:819848	attR	NA	NA	NA	NA
WP_002507907.1\|822235_823444_-	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	Q9HH70	Methanothermobacter_phage	1.6e-42	33.5

DBSCAN-SWA_5

946054 : 954512

Synechococcus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_064783030.1\|946054_946621_-	phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	4.7e-29	39.8
WP_046465176.1\|946623_947652_-	phosphoribosylformylglycinamidine cyclo-ligase	Q58MH8	Prochlorococcus_phage	7.6e-62	40.7
WP_021338640.1\|947644_949132_-	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	3.6e-44	31.3
WP_046465175.1\|949110_951300_-	phosphoribosylformylglycinamidine synthase subunit PurL	A6N228	Microbacterium_phage	1.7e-135	39.0
WP_046465174.1\|951292_951964_-	phosphoribosylformylglycinamidine synthase I	NA	NA	NA	NA
WP_002508031.1\|951963_952224_-	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA
WP_021338637.1\|952226_952928_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	G8EYA2	Synechococcus_phage	3.4e-45	40.8
WP_021338636.1\|952927_954061_-	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA
WP_021338635.1\|954047_954512_-	5-(carboxyamino)imidazole ribonucleotide mutase	A0A2P0VNU7	Tetraselmis_virus	5.2e-18	41.1

DBSCAN-SWA_6

1213415 : 1222869

Acinetobacter_phage(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_064783082.1\|1213415_1214924_+	peptide MFS transporter	A0A0P0IY73	Acinetobacter_phage	3.8e-70	34.4
WP_081358302.1\|1215106_1216054_+	diacylglycerol kinase family lipid kinase	A0A1V0SBJ0	Catovirus	3.7e-10	23.5
WP_002508308.1\|1216256_1216805_-	5'-3'-deoxyribonucleotidase	A0A0A0PKY7	Bacillus_phage	6.5e-28	37.2
WP_064783084.1\|1217075_1218131_-	histidinol-phosphate transaminase	A0A1X6WGT4	Pacmanvirus	6.1e-22	27.2
WP_002508310.1\|1218323_1219838_-	ABC transporter permease/substrate-binding protein	NA	NA	NA	NA
WP_064783085.1\|1219834_1220800_-	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	1.3e-26	33.8
WP_002508312.1\|1221090_1222869_-	DNA helicase RecQ	M1PGQ0	Moumouvirus	2.0e-78	37.4

DBSCAN-SWA_7

1231394 : 1237886

Pandoravirus(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_064783090.1\|1231394_1232537_-	anthranilate synthase component I family protein	S4VNU7	Pandoravirus	5.9e-23	33.3
WP_064783091.1\|1232520_1233114_-	aminodeoxychorismate/anthranilate synthase component II	A0A0P0IKJ1	Acinetobacter_phage	1.5e-38	46.1
WP_021339424.1\|1233368_1234040_+	7-cyano-7-deazaguanine synthase QueC	A0A2H4J8Q7	uncultured_Caudovirales_phage	5.7e-66	56.5
WP_021339423.1\|1234041_1234467_+	6-carboxytetrahydropterin synthase QueD	S4U060	uncultured_phage	1.4e-06	24.4
WP_064783092.1\|1234459_1235176_+	7-carboxy-7-deazaguanine synthase QueE	A0A1U9WRB6	Streptococcus_virus	4.7e-50	43.4
WP_064783093.1\|1235414_1236008_+	hypothetical protein	NA	NA	NA	NA
WP_021339421.1\|1236072_1236324_+	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA
WP_064783094.1\|1236821_1237886_-	glycosyltransferase family 2 protein	A8CG95	Salmonella_phage	4.5e-57	40.3

DBSCAN-SWA_8

1634898 : 1652713

Staphylococcus_phage(57.89%)

terminase,head,integrase

attL 1633852:1633869|attR 1649681:1649698

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1633852:1633869	attL	NA	NA	NA	NA
WP_037554456.1\|1634898_1635216_-\|head	phage head closure protein	A0A2I7SC03	Paenibacillus_phage	1.2e-10	41.1
WP_037554460.1\|1635836_1636358_+	hypothetical protein	A0A0H3U494	Staphylococcus_phage	1.0e-83	83.2
WP_002455577.1\|1636350_1636854_+	hypothetical protein	A0A0H3U2S7	Staphylococcus_phage	1.1e-26	67.7
WP_002455578.1\|1637035_1637524_+	ATP-binding protein	A0A2H4JFX6	uncultured_Caudovirales_phage	3.2e-87	100.0
WP_064783224.1\|1637552_1637963_-	YolD-like family protein	U3PG23	Staphylococcus_phage	2.2e-73	97.1
WP_064783226.1\|1637972_1638164_-	hypothetical protein	U3PCX8	Staphylococcus_phage	3.7e-31	98.4
WP_064783228.1\|1638252_1638588_-	hypothetical protein	NA	NA	NA	NA
WP_064783591.1\|1638584_1638863_-	hypothetical protein	A0A2H4JEA5	uncultured_Caudovirales_phage	2.8e-19	50.0
WP_064783230.1\|1638907_1639444_-	hypothetical protein	A0A2H4JB26	uncultured_Caudovirales_phage	7.8e-42	49.7
WP_064783232.1\|1639484_1639958_-\|terminase	phage terminase small subunit P27 family	A0A2H4JB21	uncultured_Caudovirales_phage	1.3e-53	72.0
WP_064783233.1\|1641091_1641565_-	hypothetical protein	A0A1W6JPF7	Staphylococcus_phage	2.3e-29	42.7
WP_064783235.1\|1641578_1642196_-	hypothetical protein	A0A1W6JPC6	Staphylococcus_phage	1.5e-49	50.5
WP_064783237.1\|1642208_1642409_-	hypothetical protein	NA	NA	NA	NA
WP_082920400.1\|1642500_1642914_-	hypothetical protein	NA	NA	NA	NA
WP_064783239.1\|1642910_1643195_-	hypothetical protein	Q4ZE68	Staphylococcus_phage	1.3e-27	63.3
WP_064783241.1\|1643181_1643985_-	DNA primase	A0A1W6JPC1	Staphylococcus_phage	2.1e-123	78.9
WP_064783242.1\|1644165_1645779_-	hypothetical protein	A0A1W6JPF4	Staphylococcus_phage	9.3e-224	72.4
WP_064783245.1\|1645837_1646146_-	hypothetical protein	NA	NA	NA	NA
WP_064783247.1\|1646147_1646558_-	hypothetical protein	NA	NA	NA	NA
WP_002512000.1\|1647082_1647343_-	hypothetical protein	NA	NA	NA	NA
WP_064783249.1\|1647343_1647553_-	helix-turn-helix transcriptional regulator	A0A1W6JQE8	Staphylococcus_phage	1.5e-17	68.4
WP_064783251.1\|1647742_1648369_+	helix-turn-helix transcriptional regulator	A0A1W6JQE6	Staphylococcus_phage	1.1e-47	48.1
WP_064783253.1\|1648453_1649590_+\|integrase	site-specific integrase	Q938N9	Temperate_phage	1.4e-69	43.8
WP_021339649.1\|1649683_1651225_-	glutamine-hydrolyzing GMP synthase	A0A1V0SH76	Hokovirus	9.5e-24	33.2
1649681:1649698	attR	NA	NA	NA	NA
WP_002506046.1\|1651246_1652713_-	IMP dehydrogenase	A0A1V0SHK8	Klosneuvirus	2.0e-95	40.5

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP012968

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection