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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP016028 Lactobacillus curvatus strain FBA2 chromosome, complete genome 1 crisprs csa3,DinG,csn2,cas2,cas1,cas9,DEDDh,cas3 0 7 7 0

Results visualization

1. NZ_CP016028
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP016028_1 1130255-1131149 TypeII NA
13 spacers
csn2,cas2,cas1,cas9

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP016028_1 1.8|1130753|31|NZ_CP016028|CRISPRCasFinder,CRT,PILER-CR 1130753-1130783 31 MN855837 Bacteriophage sp. isolate 206, complete genome 1422-1452 3 0.903
NZ_CP016028_1 1.2|1130357|30|NZ_CP016028|CRISPRCasFinder,CRT,PILER-CR 1130357-1130386 30 KY065466 Streptococcus phage IPP25, complete genome 10208-10237 7 0.767
NZ_CP016028_1 1.2|1130357|30|NZ_CP016028|CRISPRCasFinder,CRT,PILER-CR 1130357-1130386 30 MK448737 Streptococcus phage Javan351, complete genome 9895-9924 7 0.767
NZ_CP016028_1 1.2|1130357|30|NZ_CP016028|CRISPRCasFinder,CRT,PILER-CR 1130357-1130386 30 KY065468 Streptococcus phage IPP27, complete genome 10201-10230 7 0.767
NZ_CP016028_1 1.6|1130621|30|NZ_CP016028|CRISPRCasFinder,CRT,PILER-CR 1130621-1130650 30 NC_020062 Rhizobium tropici CIAT 899 plasmid pRtrCIAT899c, complete sequence 1880823-1880852 7 0.767
NZ_CP016028_1 1.3|1130423|30|NZ_CP016028|CRISPRCasFinder,CRT,PILER-CR 1130423-1130452 30 NZ_CP013139 Pseudoalteromonas sp. Bsw20308 plasmid pPBSW1, complete sequence 239873-239902 8 0.733
NZ_CP016028_1 1.6|1130621|30|NZ_CP016028|CRISPRCasFinder,CRT,PILER-CR 1130621-1130650 30 NC_021289 Burkholderia insecticola plasmid p1, complete sequence 249835-249864 8 0.733
NZ_CP016028_1 1.7|1130687|30|NZ_CP016028|CRISPRCasFinder,CRT,PILER-CR 1130687-1130716 30 NZ_CP040459 Pseudomonas stutzeri strain PheN2 plasmid unnamed, complete sequence 69675-69704 8 0.733
NZ_CP016028_1 1.12|1131018|30|NZ_CP016028|CRISPRCasFinder,CRT,PILER-CR 1131018-1131047 30 KT852578 Bacillus phage BMBtp1, complete genome 3417-3446 8 0.733
NZ_CP016028_1 1.1|1130291|30|NZ_CP016028|CRISPRCasFinder,CRT 1130291-1130320 30 NZ_CP024892 Rhodococcus ruber strain YYL plasmid pYYL1.1, complete sequence 197590-197619 9 0.7

1. spacer 1.8|1130753|31|NZ_CP016028|CRISPRCasFinder,CRT,PILER-CR matches to MN855837 (Bacteriophage sp. isolate 206, complete genome) position: , mismatch: 3, identity: 0.903

tattgactctcacgcgttcgtaggaactcgt	CRISPR spacer
cattgactctcacgcgttcgttgggactcgt	Protospacer
.******************** **.******

2. spacer 1.2|1130357|30|NZ_CP016028|CRISPRCasFinder,CRT,PILER-CR matches to KY065466 (Streptococcus phage IPP25, complete genome) position: , mismatch: 7, identity: 0.767

gctgccactccctagaatggtaagtcgtcg	CRISPR spacer
ttagtaactccttagaatggtaaatcgtcg	Protospacer
 . *. *****.***********.******

3. spacer 1.2|1130357|30|NZ_CP016028|CRISPRCasFinder,CRT,PILER-CR matches to MK448737 (Streptococcus phage Javan351, complete genome) position: , mismatch: 7, identity: 0.767

gctgccactccctagaatggtaagtcgtcg	CRISPR spacer
ttagtaactccttagaatggtaaatcgtcg	Protospacer
 . *. *****.***********.******

4. spacer 1.2|1130357|30|NZ_CP016028|CRISPRCasFinder,CRT,PILER-CR matches to KY065468 (Streptococcus phage IPP27, complete genome) position: , mismatch: 7, identity: 0.767

gctgccactccctagaatggtaagtcgtcg	CRISPR spacer
ttagtaactccttagaatggtaaatcgtcg	Protospacer
 . *. *****.***********.******

5. spacer 1.6|1130621|30|NZ_CP016028|CRISPRCasFinder,CRT,PILER-CR matches to NC_020062 (Rhizobium tropici CIAT 899 plasmid pRtrCIAT899c, complete sequence) position: , mismatch: 7, identity: 0.767

gatgcaatcggcgtgcccgaaggaacacag	CRISPR spacer
cttgcgatcggcctgcccgaaggaaaccaa	Protospacer
  ***.****** ************  **.

6. spacer 1.3|1130423|30|NZ_CP016028|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013139 (Pseudoalteromonas sp. Bsw20308 plasmid pPBSW1, complete sequence) position: , mismatch: 8, identity: 0.733

actgttgatggcggttggttagaatgggtt	CRISPR spacer
gctgttgatggcggctggttagcacgataa	Protospacer
.*************.******* *.*.   

7. spacer 1.6|1130621|30|NZ_CP016028|CRISPRCasFinder,CRT,PILER-CR matches to NC_021289 (Burkholderia insecticola plasmid p1, complete sequence) position: , mismatch: 8, identity: 0.733

gatgcaatcggcgtgcccgaaggaacacag	CRISPR spacer
aatgcaagcggcgtgcccgaagggcggggg	Protospacer
.****** ***************.  . .*

8. spacer 1.7|1130687|30|NZ_CP016028|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP040459 (Pseudomonas stutzeri strain PheN2 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.733

gtatgattaagcgcgagacaatgattaaac	CRISPR spacer
cgttaattaagggcgacacaatgattaaga	Protospacer
   *.****** **** ***********. 

9. spacer 1.12|1131018|30|NZ_CP016028|CRISPRCasFinder,CRT,PILER-CR matches to KT852578 (Bacillus phage BMBtp1, complete genome) position: , mismatch: 8, identity: 0.733

atggtgtgtttattgagcacccttttaaga	CRISPR spacer
taagtgtgtctattgagtacccttttccaa	Protospacer
  .******.*******.********  .*

10. spacer 1.1|1130291|30|NZ_CP016028|CRISPRCasFinder,CRT matches to NZ_CP024892 (Rhodococcus ruber strain YYL plasmid pYYL1.1, complete sequence) position: , mismatch: 9, identity: 0.7

gttcaaccatcggacaagccgtcccatagg	CRISPR spacer
acaccgagatcggacaagccgtcccagaga	Protospacer
.. * .  ****************** **.

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 8199 : 65968 52 Bacillus_phage(11.11%) integrase,holin,transposase,tRNA attL 20069:20097|attR 29784:29812
DBSCAN-SWA_2 80489 : 89397 9 Leptospira_phage(33.33%) transposase NA
DBSCAN-SWA_3 222087 : 271804 42 unidentified_phage(36.36%) holin,transposase NA
DBSCAN-SWA_4 563515 : 623450 63 Streptococcus_phage(25.0%) integrase,transposase,holin,bacteriocin attL 610368:610427|attR 618731:620039
DBSCAN-SWA_5 671030 : 679376 8 Synechococcus_phage(33.33%) NA NA
DBSCAN-SWA_6 915271 : 922789 7 Staphylococcus_phage(33.33%) tRNA NA
DBSCAN-SWA_7 1244670 : 1304564 59 Lactobacillus_phage(21.05%) protease,holin,transposase,tRNA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage