CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Prophage number
NZ_CP013541	Rhizobium phaseoli strain R630 plasmid pRphaR630d, complete sequence	0 crisprs	csa3,WYL	0
NZ_CP013540	Rhizobium phaseoli strain R630 plasmid pRphaR630c, complete sequence	0 crisprs	NA	1
NZ_CP013539	Rhizobium phaseoli strain R630 plasmid pRphaR630b, complete sequence	0 crisprs	csa3,DEDDh	0
NZ_CP013537	Rhizobium phaseoli strain R630 chromosome, complete genome	2 crisprs	WYL,cas3,csa3,DEDDh	4
NZ_CP013538	Rhizobium phaseoli strain R630 plasmid pRphaR630a, complete sequence	0 crisprs	NA	0

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

246759 : 287524

Lactococcus_phage(50.0%)

plate,transposase

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_008536038.1\|246759_247986_-\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA
WP_008536039.1\|247949_249836_-\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
WP_004680427.1\|249835_250339_-\|plate	type VI secretion system baseplate subunit TssE	NA	NA	NA	NA
WP_004680426.1\|250425_250959_-	type VI secretion system tube protein Hcp	NA	NA	NA	NA
WP_004680425.1\|251074_252562_-	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA
WP_016737476.1\|252564_253119_-	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA
WP_004680423.1\|253154_254147_-	type VI secretion system protein TssA	NA	NA	NA	NA
WP_064820044.1\|255845_258125_-	hypothetical protein	NA	NA	NA	NA
WP_016737477.1\|260681_262037_+\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA
WP_016737478.1\|262098_263265_+	FHA domain-containing protein	NA	NA	NA	NA
WP_008536065.1\|263264_264554_+	type VI secretion system protein TssL	NA	NA	NA	NA
WP_012489525.1\|264563_268169_+	type VI secretion system membrane subunit TssM	NA	NA	NA	NA
WP_012489526.1\|268465_270082_+	hypothetical protein	NA	NA	NA	NA
WP_170960111.1\|270252_270420_+	hypothetical protein	NA	NA	NA	NA
WP_012489527.1\|271761_272772_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_008536079.1\|275761_276649_-	hypothetical protein	NA	NA	NA	NA
WP_064818141.1\|278009_278744_-	ATP-binding protein	A0A059NT77	Lactococcus_phage	5.9e-32	36.0
WP_077994580.1\|278743_280243_-\|transposase	IS21 family transposase	A0A2L1IVA1	Escherichia_phage	2.6e-10	24.6
WP_064820024.1\|286102_287524_-\|transposase	ISNCY-like element ISRel10 family transposase	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP013537

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP013537_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP013537_1

1200976-1201057

Orphan

Consensus_repeat	Method
CCGGCCGCGAACCTAGCGGCCCGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP013537_1

>merge|NZ_CP013537|1|1200976-1201057|CRISPRCasFinder
CCGGCCGCGAACCTAGCGGCCCGGTCGTGACCCAACGACCCGGCCGTGACCAAACGGGCCGGCCGCGAACCAGCGGCCCGGC

>NZ_CP013537|1|1|1200976-1201057|CRISPRCasFinder
CCGGCCGCGAACCTAGCGGCCCGG	TCGTGACCCAACGACCCGGCCGTGACCAAACGGG
CCGGCCGCGAACCAGCGGCCCGGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP013537.1\|WP_064827171.1\|1194559_1196185_+\|cisplatin-damage-response-ATP-dependent-DNA-ligase	unknown	unknown	gnl\|CDD\|236428
NZ_CP013537.1\|WP_064827170.1\|1193347_1194358_+\|ligase-associated-DNA-damage-response-exonuclease	unknown	unknown	gnl\|CDD\|274995
NZ_CP013537.1\|WP_004676036.1\|1200281_1200491_+\|cold-shock-protein	unknown	unknown	gnl\|CDD\|224197
NZ_CP013537.1\|WP_010024958.1\|1197276_1197501_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013537.1\|WP_064827173.1\|1197556_1198255_+\|nucleotidyl-transferase-AbiEii/AbiGii-toxin-family-protein	unknown	unknown	gnl\|CDD\|378065
NZ_CP013537.1\|WP_064827177.1\|1203450_1204176_+\|thioredoxin-family-protein	unknown	unknown	gnl\|CDD\|377584
NZ_CP013537.1\|WP_064828834.1\|1202845_1203364_-\|winged-helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224759
NZ_CP013537.1\|WP_064827172.1\|1196304_1197228_+\|alpha/beta-fold-hydrolase	unknown	unknown	gnl\|CDD\|224423
NZ_CP013537.1\|WP_010008731.1\|1209763_1210093_-\|XRE-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|372700
NZ_CP013537.1\|WP_064827174.1\|1198353_1199160_+\|L,D-transpeptidase	unknown	unknown	gnl\|CDD\|224294
NZ_CP013537.1\|WP_064827175.1\|1201460_1201949_-\|MarR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197670
NZ_CP013537.1\|WP_064827169.1\|1192494_1193301_+\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|366166
NZ_CP013537.1\|WP_064827178.1\|1204267_1204735_+\|DUF1579-domain-containing-protein	unknown	unknown	gnl\|CDD\|377882
NZ_CP013537.1\|WP_064827179.1\|1204781_1205561_+\|VOC-family-protein	unknown	unknown	gnl\|CDD\|319911
NZ_CP013537.1\|WP_064827176.1\|1202185_1202608_+\|organic-hydroperoxide-resistance-protein	unknown	unknown	gnl\|CDD\|274649
NZ_CP013537.1\|WP_064827180.1\|1205763_1207284_-\|ABC-F-family-ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|223562
NZ_CP013537.1\|WP_012483106.1\|1201132_1201366_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013537.1\|WP_064827181.1\|1207983_1209579_-\|ABC-F-family-ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|223562
NZ_CP013537.1\|WP_003569533.1\|1200737_1200974_+\|30S-ribosomal-protein-S21	unknown	unknown	gnl\|CDD\|234707
NZ_CP013537.1\|WP_004676038.1\|1199301_1200036_+\|L,D-transpeptidase	unknown	unknown	gnl\|CDD\|224294

Protein	Function_ID	Function_description	E-value
NZ_CP013537.1\|WP_064827171.1\|1194559_1196185_+\|cisplatin-damage-response-ATP-dependent-DNA-ligase	gnl\|CDD\|236428	PRK09247, PRK09247, ATP-dependent DNA ligase; Validated.	0
NZ_CP013537.1\|WP_064827170.1\|1193347_1194358_+\|ligase-associated-DNA-damage-response-exonuclease	gnl\|CDD\|274995	TIGR04122, hypothetical_protein, putative exonuclease, DNA ligase-associated. Members of this protein family frequently are found annotated as a putative exonuclease involved in mRNA processing. This protein is found, exclusively in bacteria, associated with three other proteins: an ATP-dependent DNA ligase, a helicase, and putative phosphoesterase.	0
NZ_CP013537.1\|WP_004676036.1\|1200281_1200491_+\|cold-shock-protein	gnl\|CDD\|224197	COG1278, CspC, Cold shock proteins [Transcription].	1.55047e-32
NZ_CP013537.1\|WP_064827173.1\|1197556_1198255_+\|nucleotidyl-transferase-AbiEii/AbiGii-toxin-family-protein	gnl\|CDD\|378065	pfam08843, AbiEii, Nucleotidyl transferase AbiEii toxin, Type IV TA system. This family was recently identified as belonging to the nucleotidyltransferase superfamily. AbiEii is the cognate toxin of the type IV toxin-antitoxin 'innate immunity' bacterial abortive infection (Abi) system that protects bacteria from the spread of a phage infection. The Abi system is activated upon infection with phage to abort the cell thus preventing the spread of phage through viral replication. There are some 20 or more Abis, and they are predominantly plasmid-encoded lactococcal systems. TA, toxin-antitoxin, systems on plasmids function by killing cells that lose the plasmid upon division. AbiE phage resistance systems function as novel Type IV TAs and are widespread in bacteria and archaea. The cognate antitoxin is pfam13338.	5.04285e-14
NZ_CP013537.1\|WP_064827177.1\|1203450_1204176_+\|thioredoxin-family-protein	gnl\|CDD\|377584	pfam05988, DUF899, Bacterial protein of unknown function (DUF899). This family consists of several uncharacterized bacterial proteins of unknown function.	3.26429e-131
NZ_CP013537.1\|WP_064827181.1\|1207983_1209579_-\|ABC-F-family-ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|223562	COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only].	1.22944e-131
NZ_CP013537.1\|WP_064827172.1\|1196304_1197228_+\|alpha/beta-fold-hydrolase	gnl\|CDD\|224423	COG1506, DAP2, Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism].	1.14379e-32
NZ_CP013537.1\|WP_010008731.1\|1209763_1210093_-\|XRE-family-transcriptional-regulator	gnl\|CDD\|372700	pfam13744, HTH_37, Helix-turn-helix domain. Members of this family contains a DNA-binding helix-turn-helix domain.	0.000237897
NZ_CP013537.1\|WP_064827174.1\|1198353_1199160_+\|L,D-transpeptidase	gnl\|CDD\|224294	COG1376, ErfK, Uncharacterized protein conserved in bacteria [Function unknown].	1.64566e-50
NZ_CP013537.1\|WP_064827175.1\|1201460_1201949_-\|MarR-family-transcriptional-regulator	gnl\|CDD\|197670	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein.	6.8578e-21
NZ_CP013537.1\|WP_064827169.1\|1192494_1193301_+\|alpha/beta-hydrolase	gnl\|CDD\|366166	pfam00561, Abhydrolase_1, alpha/beta hydrolase fold. This catalytic domain is found in a very wide range of enzymes.	1.48932e-28
NZ_CP013537.1\|WP_064827178.1\|1204267_1204735_+\|DUF1579-domain-containing-protein	gnl\|CDD\|377882	pfam07617, DUF1579, Protein of unknown function (DUF1579). A family of paralogous hypothetical proteins identified in Rhodopirellula baltica that also has members in Gloeobacter violaceus, Sinorhizobium meliloti and Agrobacterium tumefaciens.	1.94575e-52
NZ_CP013537.1\|WP_064827179.1\|1204781_1205561_+\|VOC-family-protein	gnl\|CDD\|319911	cd07247, SgaA_N_like, N-terminal domain of Streptomyces griseus SgaA and similar domains. SgaA suppresses the growth disturbances caused by high osmolarity and a high concentration of A-factor, a microbial hormone, during the early growth phase in Streptomyces griseus. A-factor (2-isocapryloyl-3R-hydroxymethyl-gamma-butyrolactone) controls morphological differentiation and secondary metabolism in Streptomyces griseus. It is a chemical signaling molecule that at a very low concentration acts as a switch for yellow pigment production, aerial mycelium formation, streptomycin production, and streptomycin resistance. The structure and amino acid sequence of SgaA are closely related to a group of antibiotics resistance proteins, including bleomycin resistance protein, mitomycin resistance protein, and fosfomycin resistance proteins. SgaA might also function as a streptomycin resistance protein.	6.84261e-33
NZ_CP013537.1\|WP_064827176.1\|1202185_1202608_+\|organic-hydroperoxide-resistance-protein	gnl\|CDD\|274649	TIGR03561, organ_hyd_perox, peroxiredoxin, Ohr subfamily. pfam02566, OsmC-like protein, contains several deeply split clades of homologous proteins. The clade modeled here includes the protein Ohr, or organic hydroperoxide resistance protein. [Cellular processes, Detoxification].	2.7397e-72
NZ_CP013537.1\|WP_064827180.1\|1205763_1207284_-\|ABC-F-family-ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|223562	COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only].	1.89541e-128
NZ_CP013537.1\|WP_064828834.1\|1202845_1203364_-\|winged-helix-turn-helix-transcriptional-regulator	gnl\|CDD\|224759	COG1846, MarR, Transcriptional regulators [Transcription].	1.02703e-18
NZ_CP013537.1\|WP_003569533.1\|1200737_1200974_+\|30S-ribosomal-protein-S21	gnl\|CDD\|234707	PRK00270, rpsU, 30S ribosomal protein S21; Reviewed.	1.5012e-08
NZ_CP013537.1\|WP_004676038.1\|1199301_1200036_+\|L,D-transpeptidase	gnl\|CDD\|224294	COG1376, ErfK, Uncharacterized protein conserved in bacteria [Function unknown].	1.88139e-56

>NZ_CP013537.1|WP_003569533.1|1200737_1200974_+|30S-ribosomal-protein-S21
MQVLVRDNNVDQALRVLKKKMQREGLFREMKARSAFEKPSEKRAREKAEAIRRQRKLARKKLQREGLLPAPKKVLRAR
>NZ_CP013537.1|WP_004676036.1|1200281_1200491_+|cold-shock-protein
MNSGVVKWFNGTKGFGFIQPDDGSTDVFVHISAVERAGMRELTEGQKVRYDLVRDKRSGKNAADNLQAA
>NZ_CP013537.1|WP_004676038.1|1199301_1200036_+|L,D-transpeptidase
MSSDSHLSRRSFLSLSALTAASALTGCASSANTVTSGDTSIIYRSPMRLFQSPGASSVPSGAELAVMYGPVEDGGFLIPAVPYEEIDPRYYRQRVVDPTGQPPGTIVVDTPSRFLYLVQADGMAMRYGVGIGREGFAWQGSGVIQWRQKWPRWKPPNEMVARQPELVKYSIDNGGMEPGLKNPLGARALYIFSNGEDTLYRLHGNPDWRSIGKAVSSGCVRLMNQDIIDLYDRVPTKAPIVVWQ
>NZ_CP013537.1|WP_064827174.1|1198353_1199160_+|L,D-transpeptidase
MNILRRVFPIAGLVVVAASLSGCNILIPDVAADSPARFVQETSPVFYQPPGVDPRRVRPIPDQPVPQTRELYRTQFNQTYGLPVTNPVHATMYGELRDEDFTLPAIPVSRVQPQYLRQEVDYQTAERPGTVVVDTKARFLYFVEGNGKAMRYGVGLGRDGYAWSGRGVIQWKQKWPRWTPPAEMVSRQPDVRAFSAENGGMNPGLQNPLGARAMYIFKDGQDTLYRIHGTPDWQSIGKATSSGCVRMLNQDVVDLYDRLPARAEIVVM
>NZ_CP013537.1|WP_064827173.1|1197556_1198255_+|nucleotidyl-transferase-AbiEii/AbiGii-toxin-family-protein
MEFRRPEHRTIAAALRLMQADFFLANRCWFAGGTAIVMHLDEYRLSLDVDFLCADGEGYRVLRTAAVESGVGAFFREPVTTLREFRTDQYGVRTVLTLESQPIRFEIVREARVALEGTFDSKLNVPMLSLPDMFAEKLLANADRCQDRAVAYRDAIDLGMLLTRYEKIPAVAVRKAMDAYGQDIERKIGWVLDRLEDETELKHAAVVLQMDNDLAVQAIAALRGEAQRLWAF
>NZ_CP013537.1|WP_010024958.1|1197276_1197501_+|hypothetical-protein
MKTDAETMIVPNDFPELKSLVWNRDPVRAIPASEAFALYERNWRFVDTGRLTEREMRLIRDLAAAYGNGILLVS
>NZ_CP013537.1|WP_064827172.1|1196304_1197228_+|alpha/beta-fold-hydrolase
MSSHERNSFFRQRRAVLAGLAGALVLPRMAAAFDVPDEPRLAKHDYAEVRRRFRTKLLQKGPAPDKYEPLAAPADAEKIFYRSGYGGELELAAWVSKYKRERTAKPAVLFLHGGNAMGVGHWQLMKPYMDAGYVVMMPSLRGENGQRGNFSGFYDEVDDVLAAAERLAHLPGVDAGRLFIAGHSIGGTLTMLTAMSTHKFRGAAPISGNPNAFRFFNRYPQDIRFDDSNTHEFEVRSALCYAHSFKCPVRVVHGTEEAHFNDRADLLARRARAAGAHIETDIVAGNHTSALPAEIDQSIRFFHGVAA
>NZ_CP013537.1|WP_064827171.1|1194559_1196185_+|cisplatin-damage-response-ATP-dependent-DNA-ligase
MKAFADLLDRLVLTPSRNGKLKLLTDYFRDTPDPDRGYGLAAIAGTLEVRNVKPAMLRELVLERMDEVLFRYSYDYVGDLAETISLVWDNERDIDRSALAQPRLGEVVSRMNGLGRTEVRGYVRDLLDRLDSSGRFAFIKLATGAMRIGVSARLAKQALADLGGKDVTEIETLWHGLQPPYEALFQWLTGGGDKPALATPAIFHSVMLANAVEGGDLTGLDPGDYAAEWKWDGIRVQLSRSGDRRKIYSRSGDDISGAFPDILDAINFSGVVDGELLVGGTARSNSPTRTFSDLQQRLNRKTVTARMLDDYPAFIRAYDLLFDDEEDVRGRTYVARRERLSEIIDRAPHDRFDLSPLVPFSSWEELDALRAAPPDPVIEGVMIKRRDSIYQAGRMKGPWFKWKRNPYNVDAVLMYAQRGHGKRSSYYSDFTFGVWADDEDGEQLVPVGKAYFGFTDAELELLDKFVRNNTTERFGPVRAVRADRDFGFVVEVAFEGINRSTRHKSGVAMRFPRIARLRPDKPPYEADRLRTLIAMIDAKPG
>NZ_CP013537.1|WP_064827170.1|1193347_1194358_+|ligase-associated-DNA-damage-response-exonuclease
MRADALLYPAPEGLYCPEGGFYVDPVRPVERALVTHGHSDHARPGHVNVLATRQTLDIMRLRYGEGFCASEQSAGFGEELLINGVKVSFHPAGHVLGSAQIAIEKNGTRIVVSGDYKRRPDPTCAAYVPVACDVFITEATFGLPVFHHPDPLGETGKLLASLRQFPERTHLVGAYALGKAQRVIRLLRDAGYAEPIYIHGAMEKLCDYYVGQGIDLGELLPATIESRDRSAFKGAVVVGPSSAFADRWARRFNEPLPAFASGWMMVRQRAKQLGVELPLVISDHCDWPELTDTIRELHPAEVWVTHGREEALVRWCQLQGIKAKPLHLVGYEDEAD
>NZ_CP013537.1|WP_064827169.1|1192494_1193301_+|alpha/beta-hydrolase
MEQQDDELIRFEAHGAEPLPPASIEGHVGRAGARIWYASYGAGPAVILLHGGLGHSGNWGYQVPALLQSGRRVVLIDSRGHGRSTRDARPYSYELMASDVLAVMDELSLDKAAFVGWSDGACIALILAATAPSRVAGVFFFACNMDPSGTLEFVPTPVIDRCFSRHAKDYAALSATPDDFNGFVEAVSLMMRTEPNYRAEDLSRIRVPVAVVLGEHDEFIKPEHAEYLARSIPDAQMITLKGVSHFAPLQRPAEFNAAVFSFLDGLPS
>NZ_CP013537.1|WP_012483106.1|1201132_1201366_+|hypothetical-protein
MTATKDEFFNPAKLSPRDKAEATDQTARAIIAAEASARDKKTEKLKALRLQQAAEAEAEAAPAKKRRPPAKAAPRRP
>NZ_CP013537.1|WP_064827175.1|1201460_1201949_-|MarR-family-transcriptional-regulator
MVDMKAQTAKTTEIPDEEKRLEKQLCFAVYATAHAFTRAYKPILDRVGLTYPQYLVMLVLWERSELPVKTIGEQLDLDSGTLSPLLKRLEQSGLIKRMRDLRDERQVIVSLTPKGEAMKAEVDTIMTAIGQAAGCTLEEMGEMRDMLHRLRANLARAGLAGG
>NZ_CP013537.1|WP_064827176.1|1202185_1202608_+|organic-hydroperoxide-resistance-protein
MPILYTTQASATGGRAGRAVSENGVLDVTLTVPKELGGDGATGTNPEQLFAAGYSACFLGALKFVAGQQKVKIPEETTVSAKVGIGPREDGTGFGIEVALTVNIPDLDRETAEKLAAAAHIVCPYSHAMRTSTEVPVTVA
>NZ_CP013537.1|WP_064828834.1|1202845_1203364_-|winged-helix-turn-helix-transcriptional-regulator
MSNSVEIPFSTTLLVRDTCLCLHAQRAARALARLFDDALRPAGLTNGQFSLMMSLNRPEPPPMGPVATLLAMDQTTLTAALKPLQRKGWVSVMENPKDRRGRLLALTGEGKAVLARALPIWKETHAALDQKLPEGSSARLRQDLQTVSGMTDGTPAPAGSRRPPQGARAIGE
>NZ_CP013537.1|WP_064827177.1|1203450_1204176_+|thioredoxin-family-protein
MQNEVVSREQWLEARRALLLKEKEATKLRDSINAERLALPWVKVDKDYTFDTPEGKKSLADLFDGRSQLLIYHFMLGPDWEAGCPGCSFLSDHVDGALPHLNHHDVTWVAVSRAPLDKIAAYKRRMGWKFPWVSSFGSDFNFDYHVSFSPEDLAKDKVLYNFTPIEPAEANDELPGLSAFYRNDKREVFHTYSSYARGPEELIGTLMILDRAPKGRNEEGTMNFVRRHDEYEEAEAPSCCH
>NZ_CP013537.1|WP_064827178.1|1204267_1204735_+|DUF1579-domain-containing-protein
MMKTAEVLKEHSFLERLIGDWSVTAPEMGGGDDWTETVRSLHRIWFVAEGHGRMPDGKQATTILTLGYNAEKGKYVGSWIGSMMDFMWVYEGEVDASGNVLDLYTTGPDFNGEGLADYRERITFINPDHRTFTSSARQADGSWKQFMEAHYIRKI
>NZ_CP013537.1|WP_064827179.1|1204781_1205561_+|VOC-family-protein
MSETHGKFIWCELMTPDTAAAAKFYSSVVGWTTSEMKVEGMPTYTVFQANGIGVGGLMEFPAELEGQGIPPNWTGYVSVDDVDRSAKDFAANGGAVRRPPEDIPTVGRFAVVADPDGAVICIMTPAPMEQTWPELAFDAPGNIGWRELYSGNGKDALAFYSKLFGWTKDSEMDMGPMGTYYIFAHGGRQTGGMMTKPDNMPMPFWCYYFIVPTLDAAIDRVTSGGGKVVNGPMEVSGGSWIIQATDPQGAFFCLVAPKR
>NZ_CP013537.1|WP_064827180.1|1205763_1207284_-|ABC-F-family-ATP-binding-cassette-domain-containing-protein
MTLITIRNLGVTLGNPLFSKFNLVVNAGDRIGLVAANGRGKSTLLACITGALEPSEGEITKARGLTIGHVAQNVPAALFDTAFYDAVLQALPADQAESESWRVDVVLESLEVPEAMRRRPLQQSSGGWQRLAMLARAWVSEPDVLLLDEPTNHLDLEKIAQLEGWLNALPRDVPVILSSHDRAFLDATTNRTLFLRPEQSPVFALPYSRARAALDEADAAEARRYERDMKTAEQLRKQAAKLNNIGINSGSDLLVVKTKQLKQRAEKLEDAAKPAHLERSAGAIRLANRGTHAKVLVTLEDAAVTTPDGTLLFRTGRQFICQDDRIVLLGLNGAGKSRLVSMLKQAIERPETARDGIKATPSLVLGYGDQSLADLADGDTPLGTIIRRFDVGDQRARALLAGAGMTIDMQAKPIGQLSGGQKARLGMLVLRLTEPNFYLLDEPTNHLDIEGQEALEGELMAQEASCLLVSHDRSFVRAVGNRFWLIEKKRLVEVESPEGFFASVAG
>NZ_CP013537.1|WP_064827181.1|1207983_1209579_-|ABC-F-family-ATP-binding-cassette-domain-containing-protein
MPASITLSQISWSAPDGRPLFSNLDLSFGQERAGLVGRNGVGKTTLLKLVSGEIRPHAGTISVGGSLGILRQSVQVAPEETIADLFGVTAALAVLHRAEAGRATADELAAADWMLPARIAAALGRTGLDAEPQTPLAALSGGQRTRAGLAALVFAEPDFLLLDEPTNNLDRDGREAVIALMSGWRAGAIIVSHDRELLESVDQIVELTSLGATRHGGNWSHYRERKALELAAAQHDLADAEKRMAEVARKTQATVERQARRDSAGRKMAAKGGIPRILLGGMKERSETTGGDNARLAERRRSQVLEEAKAAREKIEILQPLSVNLPSTGLSASKIVLRMEAVTAGYRPGDAVIRDLSFAVTGPERIALTGRNGSGKTTLLALVTGELKPWDGTVAVMTDMSMLDQQVSLLNPGLSIRDNFRRINPLSDENTCRAALARFMFRADAALQTVSTLSGGQLLRAGLACTLGSTPPPLLILDEPTNHLDIDSISAVEAGLSAYDGALLVVSHDERFLENIGIERRLELTGGAAVG
>NZ_CP013537.1|WP_010008731.1|1209763_1210093_-|XRE-family-transcriptional-regulator
MSTEWKTLRAELPEDVRARLDMKRQERRLGKALAEVRKAMDATQQEVAARAAMTQNTVSKIESADDVLLSSIVRYMHSLGGGVELVLKTPDGKARRVDFDPEIYVKQTV

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Crispr_ID: NZ_CP013537_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP013537_2

1872390-1872478

Orphan

Consensus_repeat	Method
GCCGCTCCGAAGAAGAAGGCTGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP013537_2

>merge|NZ_CP013537|2|1872390-1872478|CRISPRCasFinder
GCCGCTCCGAAGAAGAAGGCTGCCGCCAAGACCGAAGCCGCCGAGGCTGGCGAAGGCGAGGAAGCCGCCGCTCCGAAGAAGAAGGCTGC

>NZ_CP013537|2|2|1872390-1872478|CRISPRCasFinder
GCCGCTCCGAAGAAGAAGGCTGC	CGCCAAGACCGAAGCCGCCGAGGCTGGCGAAGGCGAGGAAGCC
GCCGCTCCGAAGAAGAAGGCTGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP013537.1\|WP_004673833.1\|1874111_1874534_+\|nuclear-transport-factor-2-family-protein	unknown	unknown	gnl\|CDD\|226158
NZ_CP013537.1\|WP_004678848.1\|1861139_1861487_+\|preprotein-translocase-subunit-YajC	unknown	unknown	gnl\|CDD\|224775
NZ_CP013537.1\|WP_004678838.1\|1867858_1868005_-\|DUF1127-domain-containing-protein	unknown	unknown	gnl\|CDD\|227744
NZ_CP013537.1\|WP_037138401.1\|1879075_1880263_-\|alpha-hydroxy-acid-oxidizing-protein	unknown	unknown	gnl\|CDD\|376451
NZ_CP013537.1\|WP_004673834.1\|1874626_1876402_-\|radical-SAM-protein	unknown	unknown	gnl\|CDD\|214792
NZ_CP013537.1\|WP_037138406.1\|1883060_1883234_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013537.1\|WP_037138394.1\|1869994_1870585_+\|GDYXXLXY-domain-containing-protein	unknown	unknown	gnl\|CDD\|379571
NZ_CP013537.1\|WP_064827475.1\|1868903_1869998_+\|DUF2157-domain-containing-protein	unknown	unknown	gnl\|CDD\|227209
NZ_CP013537.1\|WP_004673840.1\|1881197_1882034_-\|type-I-methionyl-aminopeptidase	unknown	unknown	gnl\|CDD\|235576
NZ_CP013537.1\|WP_064818081.1\|1865393_1865861_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013537.1\|WP_064818080.1\|1864465_1865323_+\|phytoene/squalene-synthase-family-protein	unknown	unknown	gnl\|CDD\|224478
NZ_CP013537.1\|WP_037138403.1\|1880365_1881190_-\|DNA-repair-protein-RadC	unknown	unknown	gnl\|CDD\|178801
NZ_CP013537.1\|WP_004678841.1\|1867416_1867560_-\|DUF1127-domain-containing-protein	unknown	unknown	gnl\|CDD\|227744
NZ_CP013537.1\|WP_004673836.1\|1877421_1878828_-\|Si-specific-NAD(P)(+)-transhydrogenase	unknown	unknown	gnl\|CDD\|235373
NZ_CP013537.1\|WP_004678846.1\|1864076_1864463_+\|Mth938-like-domain-containing-protein	unknown	unknown	gnl\|CDD\|226260
NZ_CP013537.1\|WP_064827473.1\|1861531_1864072_+\|protein-translocase-subunit-SecDF	unknown	unknown	gnl\|CDD\|237805
NZ_CP013537.1\|WP_064827474.1\|1865881_1867318_-\|methylenetetrahydrofolate--tRNA-(uracil(54)--C(5))-methyltransferase-(FADH(2)-oxidizing)-TrmFO	unknown	unknown	gnl\|CDD\|235416
NZ_CP013537.1\|WP_012483622.1\|1883230_1883563_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013537.1\|WP_037138405.1\|1882270_1882930_+\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224228
NZ_CP013537.1\|WP_037138415.1\|1883499_1883994_-\|Holliday-junction-resolvase-RuvX	unknown	unknown	gnl\|CDD\|234639

Protein	Function_ID	Function_description	E-value
NZ_CP013537.1\|WP_004673833.1\|1874111_1874534_+\|nuclear-transport-factor-2-family-protein	gnl\|CDD\|226158	COG3631, COG3631, Ketosteroid isomerase-related protein [General function prediction only].	1.35936e-11
NZ_CP013537.1\|WP_004678848.1\|1861139_1861487_+\|preprotein-translocase-subunit-YajC	gnl\|CDD\|224775	COG1862, YajC, Preprotein translocase subunit YajC [Intracellular trafficking and secretion].	4.2566e-32
NZ_CP013537.1\|WP_004678838.1\|1867858_1868005_-\|DUF1127-domain-containing-protein	gnl\|CDD\|227744	COG5457, COG5457, Uncharacterized conserved small protein [Function unknown].	7.56647e-09
NZ_CP013537.1\|WP_037138401.1\|1879075_1880263_-\|alpha-hydroxy-acid-oxidizing-protein	gnl\|CDD\|376451	pfam01070, FMN_dh, FMN-dependent dehydrogenase.	2.50653e-155
NZ_CP013537.1\|WP_004673834.1\|1874626_1876402_-\|radical-SAM-protein	gnl\|CDD\|214792	smart00729, Elp3, Elongator protein 3, MiaB family, Radical SAM. This superfamily contains MoaA, NifB, PqqE, coproporphyrinogen III oxidase, biotin synthase and MiaB families, and includes a representative in the eukaryotic elongator subunit, Elp-3. Some members of the family are methyltransferases.	5.04721e-21
NZ_CP013537.1\|WP_037138394.1\|1869994_1870585_+\|GDYXXLXY-domain-containing-protein	gnl\|CDD\|379571	pfam14345, GDYXXLXY, GDYXXLXY protein. This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 171 and 199 amino acids in length. It contains a conserved GDYXXLXY motif.	4.847e-44
NZ_CP013537.1\|WP_064827475.1\|1868903_1869998_+\|DUF2157-domain-containing-protein	gnl\|CDD\|227209	COG4872, COG4872, Predicted membrane protein [Function unknown].	1.78453e-42
NZ_CP013537.1\|WP_004673840.1\|1881197_1882034_-\|type-I-methionyl-aminopeptidase	gnl\|CDD\|235576	PRK05716, PRK05716, methionine aminopeptidase; Validated.	3.87967e-163
NZ_CP013537.1\|WP_064818080.1\|1864465_1865323_+\|phytoene/squalene-synthase-family-protein	gnl\|CDD\|224478	COG1562, ERG9, Phytoene/squalene synthetase [Lipid metabolism].	5.95005e-60
NZ_CP013537.1\|WP_037138403.1\|1880365_1881190_-\|DNA-repair-protein-RadC	gnl\|CDD\|178801	PRK00024, PRK00024, DNA repair protein RadC.	2.32136e-107
NZ_CP013537.1\|WP_004678841.1\|1867416_1867560_-\|DUF1127-domain-containing-protein	gnl\|CDD\|227744	COG5457, COG5457, Uncharacterized conserved small protein [Function unknown].	9.51621e-12
NZ_CP013537.1\|WP_004673836.1\|1877421_1878828_-\|Si-specific-NAD(P)(+)-transhydrogenase	gnl\|CDD\|235373	PRK05249, PRK05249, Si-specific NAD(P)(+) transhydrogenase.	0
NZ_CP013537.1\|WP_004678846.1\|1864076_1864463_+\|Mth938-like-domain-containing-protein	gnl\|CDD\|226260	COG3737, COG3737, Uncharacterized conserved protein [Function unknown].	1.54923e-59
NZ_CP013537.1\|WP_064827473.1\|1861531_1864072_+\|protein-translocase-subunit-SecDF	gnl\|CDD\|237805	PRK14726, PRK14726, protein translocase subunit SecDF.	0
NZ_CP013537.1\|WP_064827474.1\|1865881_1867318_-\|methylenetetrahydrofolate--tRNA-(uracil(54)--C(5))-methyltransferase-(FADH(2)-oxidizing)-TrmFO	gnl\|CDD\|235416	PRK05335, PRK05335, tRNA (uracil-5-)-methyltransferase Gid; Reviewed.	0
NZ_CP013537.1\|WP_037138405.1\|1882270_1882930_+\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	9.96856e-09
NZ_CP013537.1\|WP_037138415.1\|1883499_1883994_-\|Holliday-junction-resolvase-RuvX	gnl\|CDD\|234639	PRK00109, PRK00109, Holliday junction resolvase RuvX.	1.29396e-54

>NZ_CP013537.1|WP_037138394.1|1869994_1870585_+|GDYXXLXY-domain-containing-protein
MSSWMARLQSGKGYLLSAVIVAGLQTIILGTIIQSRASILSNGAEVLLKTAPVDPRDFLRGDYVVLNYDISSVPVQTVSGGIPAEPGERTLWVRLKKQADSFWTVTESSFHTLPPQPETVILRSQPFYSGGLAAGDSIRVEFGIERYYVPEGQGKPLEEARNDGNVAIAVRVSADGRAQIRSLLVDGKPVYEEPLY
>NZ_CP013537.1|WP_064827475.1|1868903_1869998_+|DUF2157-domain-containing-protein
MYRGRLERDLSLWVGKGLLGEETAGVLLAEYDSRPASFSLGRVLMALAAVLLAAAVLLVVASNWEAIPRLVRVGAILALIWAVHVAAALMLARGAAAAAGGLLVIGAMSFGGAISLVGQMYHLSGDEQTVMYLWFAIAAVSAVLFRSGAVVVVAGFLSWASFAVYLENHDTHWIGLDPWMAPIMAVIVIALVRYTGAARARHLAYLLLIGWLAWLYTLYEEMAMALAFAVGGMAGVVLTALPHPRIAPLVRSAGPAPAFYSSLVAAIGFLLLHIEIEQGWRLVVLGLATLAAAVLAITLHGRNNGAVRYLAYTTFAAEMLYLASVTVGSILGTSSLFLFSGLVVAFVAWIVIRLERRFSREARA
>NZ_CP013537.1|WP_004678838.1|1867858_1868005_-|DUF1127-domain-containing-protein
MNITRSFNNWRKYRQTVTELGRMTNRELHDLGIDRSDIHRVAREASSR
>NZ_CP013537.1|WP_004678841.1|1867416_1867560_-|DUF1127-domain-containing-protein
MNPIRIAKSWLSYRRTLNELGSLSNQTLSDIGVSRYDIRNIASRSFR
>NZ_CP013537.1|WP_064827474.1|1865881_1867318_-|methylenetetrahydrofolate--tRNA-(uracil(54)--C(5))-methyltransferase-(FADH(2)-oxidizing)-TrmFO
MNTISYPPIHVVGGGLAGSEAAWQIASSGVPVILHEMRGVRGTDAHKTDGLAELVCSNSFRSDDATSNAVGVIHAEMRMAGSLIMAAADRHQVPAGGALAVDRDGFSEAVTKAIHDHPLITVVREEITGLPPSDWDLAIVATGPLTAPSLASAIQAQTGEDSLAFFDAIAPIVYRDSIDMDICWYQSRYDKVGPGGTGKDYINCPMDEAQYNAFVDALIAGDTVGFKEWEGTPYFDGCLPIEVMAERGRETLRHGPMKPMGLTNTHNPTVKAYAVVQLRQDNALGTLYNMVGFQTKLKYGAQAEIFRMIPGLKNAEFARLGGLHRNTYINSPTLLDPSLTLKSRPGLRFAGQITGCEGYVESASVGLMAGRFAAAERKGEAILLPPATTALGSLLGHITGGHIVTDEEPGKRSFQPMNINFGLFPELEPGSIVKPAGVKRFRGKDKTIMKRQLIARRALADCAAWLGQTPRFAESASA
>NZ_CP013537.1|WP_064818081.1|1865393_1865861_+|hypothetical-protein
MGIIVWCVLFAIVILIAFVATRMAAQNKEDSLHDTGLAIIEFGRAFPNEAIRQLQATENGQAIFVRLHDNKAGLMRNMARHFSCHLIEPGRVRVVSSETGRGLVIDFLDAPHHDGKFEFASPKEASEVALWLLGNYIAEPDKDLPPGNISAANNQ
>NZ_CP013537.1|WP_064818080.1|1864465_1865323_+|phytoene/squalene-synthase-family-protein
MAEENIATNQDICLAMLRDSDRDRYLACLLSPQDRRGALAALYAFNAELARIRDLVHEPLPGEVRMQYWRDLLEGSAHGSTAANPVAAALLTAIETHRLPRKTLVDMIEARTFDLYDDPMETRLSLEGYAGETASALIQLASLVLSPQDAARSADAAGHAGVAQAIAGLLLLMPLHRRRGQLYIPLQILSATGLDRDSFLAGEDRPRIAAAVEAFAGLGREHLAKARGTGPIAPAVFPAFLPATLAEPVLLKAQRRGAQLFDRPLQPPQWRRQLAMALAASRRKI
>NZ_CP013537.1|WP_004678846.1|1864076_1864463_+|Mth938-like-domain-containing-protein
MAKGIEIRAAHFPGRAPIDTYGNGGFRFADMSHRGSILCLPSGIHGWDMDMSKPLSPENFRRVLEEAADIEVLLVGTGTELRRLPEELKQALKARGIASDPMSTGAAVRTFNIMLAEQRAVAAALIAV
>NZ_CP013537.1|WP_064827473.1|1861531_1864072_+|protein-translocase-subunit-SecDF
MLHFSRWKTLLIWLVAFAAVVIAAPNLLSEAQRASLPDWLRHDRVMLGLDLQGGSHIVLKVERSDIVKDRLEEAVANVRNALRGAGIRYTGLTGNDRTVSVRITDPAETQKAVDRLKSLTTTGRDSAPELTLQQGGEGQLSLQISDADITADVASARTRSLDIVGRRIAGFGYENFLVRPEGDDRITVQVLGSVDAERLKNLLNQPAKLSFHLIDESMSGQEALNGRWPATSQVLYSLDDPPVPYLVDRTAFASAGNMVDIQPVADPQTQDTSIAYRLDAEGTKRLAEVTGQNIGKHLAIVFDDQVMSAPAIDAAITNGEGRISANFSEDGVRDLAVMLRAGALPATLTSVEERSVSPTFGGESIVSGLVAGLVAVVLVAALMIALYRILGVIAVVSLFFNLILIIAALSLAGATLTLPGIAGIVLIVGMAVDSNVLIYERIREEEKTAHSFAEAVGRGFSRAFATIVDANVTIFIAAVILFFLGSEAIRGFAVTLAVGILTTVFTAFTLTRSIVAVWLARRHPRHLPKSVLTHLFEHANIRFMGIRRYVFTASAAISLIAMAAFATVGLQLGIDFTGGSLIEVTAKQGNADIADLRSRLNDLNLGEVGVERTGGPANARIRIASQGGGENAEQSAATLVRGELEADYDFRRVEVVGPAISGELTMMATLGIVAALAAILLYIWIRFEWQFAVGAIVATLHDVIIMLGLFVLTGIEFNLTSIAAVLTIVGYSLNDTVVVYDRMRENLKRYTKMPLPILIDASINQTLSRTVLTAATTLLALLALYLFGGDVMRSFAFAMLFGVALGTFSSIYIAAPVLIVFRLRPESPDGEESNKTDAGVKSGTVV
>NZ_CP013537.1|WP_004678848.1|1861139_1861487_+|preprotein-translocase-subunit-YajC
MFITPAFAQSATDTATGFGGSGFEMIILFVPLMVVWYFLLIRPQRAQAKKREETLKAIRRGDQVVTGGGLVGKVTKVVDDKEVEVEIAEGVRVRIVRSGISEVRVKGEPVKADAA
>NZ_CP013537.1|WP_004673833.1|1874111_1874534_+|nuclear-transport-factor-2-family-protein
MTEKHDMKKLVEEIYAVRGRGDIEGTLALIGDDCTFRMAGNTRLSPLSTEMGGQAFRQVIAQLITVWDLSKVNTTGIYVDEDEHIVFAHREGEVRHIPSGVSFYTEYVDKIHFRDGKPVKIVEFVDTLQVAETSQIIQIA
>NZ_CP013537.1|WP_004673834.1|1874626_1876402_-|radical-SAM-protein
MSHALEAARRRFQLILIKPSHYDDDGYVIRWWRAMIPSNSLAALYGIAAECAERQVLGPDTAIDITVIDETNTRVDFARLLAQFKRHGNFGMVALVGVQSNQYPRALDIARPFRNAGLPVSMGGFHVSGCLSMLDGQAVGLDACRDMGISMFAGEAEGRLDMVLRDAASGELKPLYNFMNDLPGIGGTPVPFLPKDNIQRTLGLSTSFDAGRGCPYQCSFCTIINVQGRKSRFRSADDVEKLVRMNWAQGIHKFFITDDNFARNKDWEAIFDRLIELKERDGIPLGLMIQVDTLCHKIPNFIEKSRRAGVTRVFIGLENVNPDNLTAAKKNQNKITEYRKMLLAWKAQGIMTLAGYILGFPADTPESIRRDIAIIQEELPLDVIEFFILTPLPGSEDHQVLWKKGIEMDGDLNIYDVEHVCTAHPKMSKQQWEDIYHEAWSLYYSPDHMKTLLRRAVATGVPLARLVKVLVSFATTVPLENVHPLQSGLLRLKTPSERRPELPRENPLLFWPRFAWETFSKHASLAGTIVGLTVSAFLISRDAKSKAYMDQALTPVADDEEETLNLFTKTSGGTAAVSHVRKVAQLTRGAN
>NZ_CP013537.1|WP_004673836.1|1877421_1878828_-|Si-specific-NAD(P)(+)-transhydrogenase
MFQYDLVVVGSGPAGRRGAIQAAKLGKKVLVIEQGKRVGGVSVHTGTIPSKTLRETALNLSGWRERGFYGRSYRVKQEISAEDLRRRLLITLNHEVEVLEHQFARNRVHHMRGKASFVDASTLQVVKDDGEITQVSAASVLLAVGTKPFRPDYMPFDGKTVLDSDELLDIQELPRSMIVIGAGVIGIEYATIFSALDTAVTVIDPKATMLDFIDKEIVEDFTYQLRDRNMKLLLGQKADKVETLENGKVELTLDSGRRLTTDMVLFAAGRMGATDTLNLEAIGLEADSRGRLKVNPETFQTSVANVYAAGDVVGFPSLASTSMEQGRIAARVAIGAVAKEPQKYFPYGIYAVPEISTCGLTEEEMKERGIPYECGIARFRETSRGHIMGLDTGLLKLIFSLKTRRLLGVHIVGEGATELVHIGQAVLNLKGTVEYFVENTFNYPTLAEAYKIAGLDAWNRMGDIKSEL
>NZ_CP013537.1|WP_037138401.1|1879075_1880263_-|alpha-hydroxy-acid-oxidizing-protein
MTIRSGNTDRWTRLCRDVLCLDDFEIKARRHLPKPLFGYIAGATETNASLRHNAEAFQAYAFRPRVLRDVSTRSTATSLFGKTHAVPFGIAPMGISALMAYRGDIVLAQGADQSGIPMIISGSSLIPLEEIAAASPQAWFQAYLPGEPDRIDALIDRVAAAGIDTLLLTVDTATLPNRENNVRAGFSTPLRPGLRLAWQGISHPRWTTGTFLRTIAQHGIPHFENSYATRGAPIISSNVTRDFGKRDHLNWSHLERIRKRWSGRLVVKGIMHPEDAARAADTGADGVIVSNHGGRQLDGTASPLQVLPDVAARVGDSIAVMVDGGIRRGTDIMKALALGACFVFVGRPFLYAAAVAGLPGVLRAADILKTELYSNMALLGVTRVGDISADYITRA
>NZ_CP013537.1|WP_037138403.1|1880365_1881190_-|DNA-repair-protein-RadC
MAKRPAATSSDDELPFATEEPVADERSFFGGRPQNPTAPNARAALPASLSGPEHYHGHRERLRDRFREQGDTALADYEILELLLFRLIPRRDTKPIAKALIDRFGSLSGVFGAPAGLLTEVKGVGENVALDLKLISTVAHRTLKSEIRSKQVLSSWSSVIQYCHAAMAHETREQFRILFLDKRNVLIADEVQGRGTVDHTPVYPREVVKRALELSATAIILVHNHPSGDPTPSRADIDMTKVIIEAAKALDITVHDHIIIGKDGHVSLKGLKLI
>NZ_CP013537.1|WP_004673840.1|1881197_1882034_-|type-I-methionyl-aminopeptidase
MVNYIEASSAPPKNTGAIRLYDTQAFDGMRKACQLTARCLDALADIVKPGLLTDEIDRFVFDFGMDHGAYPATLNYRGYTKSTCTSINHVVCHGIPNDKPLREGDIVNIDVTFVLDGWHGDSSRMYPVGTVKRAAERLLEVTYESLMRGIAAVRPGARTGAIGEAIQTYAEAERCSVVRDFCGHGVGRLFHDSPNILHYGRANEGPELREGMIFTIEPMINLGRPHVKVLADGWTAVTRDRSLSAQYEHTVGVTADGCEIFTLSPAGLDRPGLPSLAR
>NZ_CP013537.1|WP_037138405.1|1882270_1882930_+|TetR/AcrR-family-transcriptional-regulator
MLNEAVNLDSLPGAGGEPERRVRDRGATERAILVAAKGLLAEEGFQNFGINAVARRAGCDKQLIYRYYGGLDGLVEAIGADLGTWVRDRIPEDAGGMFLLTYGDLMERLALLLLDALKNDPLMRRILAWEVSENTEQVRRLSEARSKALALWLDRMRGSLAPPKGVDAAAVNAVVIAAIQHLVLSGAAGGQCAGLSLKTSKDWEKAATALKRLVRGVYG
>NZ_CP013537.1|WP_037138406.1|1883060_1883234_+|hypothetical-protein
MGSKIARAVFLVTAIMFFAVLALDIAIPTLVLCTMALSTWVVSFDLPVVRKQRGEAA
>NZ_CP013537.1|WP_012483622.1|1883230_1883563_+|hypothetical-protein
MRWFLIFWAGPIVFLGGWYWLSYYDINFGFLMLTRQIHDLTFQIYGEALGMPPEAIPPLVARAIAVDSLVVFAILGFRKRKPIMAWWQARQALNSSPSDLASKESLSSAP
>NZ_CP013537.1|WP_037138415.1|1883499_1883994_-|Holliday-junction-resolvase-RuvX
MTVLTIEEMAATLAPGQAIAGLDLGTKTIGLSMSDLGRRFATPRPVIRRAKFTIDAQALLDFAAKEKVAGFVIGLPMNMDGSAGPRVQATRAFVRNMEQKTALPFVYWDERLSTVAAERTLLEMDVSRAKRAERIDSAAASFILQGALDRLSLLARSDGDEFSA

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1520942 : 1530109

Aeromonas_phage(14.29%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_064827317.1\|1520942_1522241_+	serine hydroxymethyltransferase	A0A219Y950	Aeromonas_phage	5.4e-97	50.8
WP_003547190.1\|1522250_1522727_+	transcriptional repressor NrdR	NA	NA	NA	NA
WP_064827318.1\|1522730_1523867_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	A0A1V0SE20	Indivirus	8.5e-38	32.2
WP_064817897.1\|1523866_1524478_+	riboflavin synthase	A0A2I2L4R9	Orpheovirus	2.0e-17	35.6
WP_064817899.1\|1524717_1525587_-	glucose-1-phosphate thymidylyltransferase RfbA	K7QKA7	Escherichia_phage	1.2e-95	59.5
WP_064827319.1\|1525596_1526484_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA
WP_064827320.1\|1526487_1527543_-	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	1.6e-94	51.2
WP_004679711.1\|1527549_1528128_-	dTDP-4-dehydrorhamnose 3,5-epimerase	A0A218MN57	uncultured_virus	7.9e-32	44.3
WP_064827321.1\|1528117_1530109_-	hypothetical protein	F2Y0P4	Organic_Lake_phycodnavirus	1.1e-05	36.4

DBSCAN-SWA_2

1850974 : 1864072

uncultured_Mediterranean_phage(90.91%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_064828852.1\|1850974_1851988_+	beta-N-acetylhexosaminidase	A0A1B1IVS3	uncultured_Mediterranean_phage	1.4e-23	41.9
WP_029531141.1\|1852006_1852864_+	segregation/condensation protein A	A0A1B1IVW1	uncultured_Mediterranean_phage	3.6e-33	36.7
WP_064827468.1\|1852860_1853565_+	SMC-Scp complex subunit ScpB	A0A1B1IVT7	uncultured_Mediterranean_phage	6.6e-41	48.2
WP_003558879.1\|1853746_1853938_+	twin-arginine translocase TatA/TatE family subunit	A0A1B1IVR9	uncultured_Mediterranean_phage	5.8e-08	69.8
WP_064827469.1\|1853989_1854616_+	twin-arginine translocase subunit TatB	NA	NA	NA	NA
WP_004678862.1\|1854612_1855440_+	twin-arginine translocase subunit TatC	A0A1B1IVR7	uncultured_Mediterranean_phage	6.8e-53	46.1
WP_064818075.1\|1855536_1856820_+\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	2.2e-98	45.3
WP_004678859.1\|1856824_1857598_+	5'/3'-nucleotidase SurE	A0A1B1ITZ2	uncultured_Mediterranean_phage	1.8e-23	30.2
WP_064827470.1\|1857594_1858248_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	6.8e-16	35.7
WP_064827471.1\|1858387_1859977_+	peptidoglycan DD-metalloendopeptidase family protein	I3PV24	Clostridium_phage	5.0e-12	30.0
WP_064827472.1\|1860063_1860936_-	ATP-binding protein	NA	NA	NA	NA
WP_004678848.1\|1861139_1861487_+	preprotein translocase subunit YajC	A0A1B1IVR5	uncultured_Mediterranean_phage	4.1e-12	39.1
WP_064827473.1\|1861531_1864072_+	protein translocase subunit SecDF	A0A1B1IVP7	uncultured_Mediterranean_phage	9.7e-58	50.2

DBSCAN-SWA_3

2083624 : 2093908

uncultured_Mediterranean_phage(83.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_064827557.1\|2083624_2086546_-	excinuclease ABC subunit UvrA	A0A1B1IVR3	uncultured_Mediterranean_phage	0.0e+00	62.2
WP_064827558.1\|2086828_2087344_+	single-stranded DNA-binding protein	R9TP78	Rhizobium_phage	1.2e-44	72.9
WP_004671901.1\|2087446_2088094_-	MarC family protein	NA	NA	NA	NA
WP_064827559.1\|2088331_2091154_+	DNA gyrase subunit A	A0A1B1IVS2	uncultured_Mediterranean_phage	6.1e-77	42.2
WP_003539654.1\|2091577_2091733_-	hypothetical protein	NA	NA	NA	NA
WP_064827560.1\|2091875_2092154_-	hypothetical protein	NA	NA	NA	NA
WP_064818226.1\|2092244_2092739_+	pantetheine-phosphate adenylyltransferase	A0A1B1IVQ3	uncultured_Mediterranean_phage	4.7e-25	37.8
WP_004671914.1\|2092797_2093370_+	peptidylprolyl isomerase	A0A1B1IVS0	uncultured_Mediterranean_phage	7.5e-43	53.2
WP_064827561.1\|2093398_2093908_+	peptidylprolyl isomerase	A0A1B1IVS0	uncultured_Mediterranean_phage	7.1e-45	58.8

DBSCAN-SWA_4

3894214 : 3904367

Mycobacterium_phage(25.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_016737530.1\|3894214_3894925_+	7-cyano-7-deazaguanine synthase QueC	A0A2P1JXV3	Rhodococcus_phage	2.7e-50	48.7
WP_004677374.1\|3894924_3895281_+	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA
WP_064828515.1\|3895277_3896006_+	7-carboxy-7-deazaguanine synthase QueE	A0A1U9WRB6	Streptococcus_virus	1.4e-41	38.6
WP_064828516.1\|3896123_3897347_-	adenylate/guanylate cyclase domain-containing protein	M1HLN3	Pelagibacter_phage	3.2e-14	30.0
WP_064828517.1\|3897449_3898424_-	class 1b ribonucleoside-diphosphate reductase subunit beta	R4TBI6	Mycobacterium_phage	3.3e-139	75.1
WP_064828518.1\|3898620_3900825_-	class 1b ribonucleoside-diphosphate reductase subunit alpha	A8E2R1	Enterococcus_phage	3.3e-211	51.7
WP_004677363.1\|3900803_3901208_-	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	A0A249Y1D6	Staphylococcus_phage	4.7e-07	34.8
WP_004677360.1\|3901224_3901446_-	glutaredoxin-like protein NrdH	V5UN81	Mycobacterium_phage	2.3e-16	52.1
WP_064828519.1\|3902120_3904367_-	cadmium-translocating P-type ATPase	E4ZFI9	Streptococcus_phage	2.1e-125	36.5

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP013540

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP013537

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection