CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Prophage number
NZ_CP013503	Rhizobium esperanzae strain N561 plasmid pRspN561c, complete sequence	0 crisprs	csa3,DEDDh	0
NZ_CP013504	Rhizobium esperanzae strain N561 plasmid pRspN561d, complete sequence	0 crisprs	csa3	0
NZ_CP013501	Rhizobium esperanzae strain N561 plasmid pRspN561a, complete sequence	0 crisprs	NA	0
NZ_CP013502	Rhizobium esperanzae strain N561 plasmid pRspN561b, complete sequence	0 crisprs	NA	1
NZ_CP013500	Rhizobium esperanzae strain N561 chromosome, complete genome	0 crisprs	WYL,csa3,cas3,DEDDh,RT	5

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

243000 : 279543

Porcine_endogenous_retrovirus(100.0%)

plate,transposase

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_064812000.1\|243000_244227_-\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA
WP_008536039.1\|244190_246077_-\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
WP_004680427.1\|246076_246580_-\|plate	type VI secretion system baseplate subunit TssE	NA	NA	NA	NA
WP_004680426.1\|246666_247200_-	type VI secretion system tube protein Hcp	NA	NA	NA	NA
WP_004680425.1\|247315_248803_-	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA
WP_016737476.1\|248805_249360_-	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA
WP_004680423.1\|249395_250388_-	type VI secretion system protein TssA	NA	NA	NA	NA
WP_064824610.1\|252086_254366_-	hypothetical protein	NA	NA	NA	NA
WP_016737477.1\|256922_258278_+\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA
WP_008536064.1\|258339_259506_+	FHA domain-containing protein	NA	NA	NA	NA
WP_008536065.1\|259505_260795_+	type VI secretion system protein TssL	NA	NA	NA	NA
WP_012489525.1\|260804_264410_+	type VI secretion system membrane subunit TssM	NA	NA	NA	NA
WP_004678816.1\|264495_264684_+	hypothetical protein	NA	NA	NA	NA
WP_012489526.1\|264706_266323_+	hypothetical protein	NA	NA	NA	NA
WP_008536071.1\|266418_266661_+	SIR2 family protein	NA	NA	NA	NA
WP_012489527.1\|268002_269013_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_064812001.1\|272031_272919_-	hypothetical protein	NA	NA	NA	NA
WP_011053406.1\|276667_277834_+\|transposase	IS110-like element ISRel9 family transposase	NA	NA	NA	NA
WP_064810414.1\|278169_279543_-\|transposase	ISNCY-like element ISRel26 family transposase	A1YTJ2	Porcine_endogenous_retrovirus	1.4e-05	26.8

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP013500

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1088914 : 1102235

EBPR_podovirus(33.33%)

tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_064824519.1\|1088914_1090351_+	DNA packaging protein	C8CLI4	Xylella_phage	1.7e-160	62.6
WP_064824521.1\|1092454_1092691_+	hypothetical protein	NA	NA	NA	NA
WP_064824522.1\|1092725_1093706_+	hypothetical protein	F8TUR8	EBPR_podovirus	7.8e-32	36.0
WP_064824523.1\|1093730_1094726_+	DUF5309 domain-containing protein	F8TUR9	EBPR_podovirus	3.6e-133	72.8
WP_064824524.1\|1094738_1095176_+	hypothetical protein	A0A218MMG4	uncultured_virus	1.7e-15	38.7
WP_167377180.1\|1095230_1095404_+	hypothetical protein	NA	NA	NA	NA
WP_064824525.1\|1095400_1095721_+	hypothetical protein	F8TUS1	EBPR_podovirus	5.0e-28	53.8
WP_064824526.1\|1095720_1096311_+	hypothetical protein	A0A088F6W5	Sulfitobacter_phage	2.9e-37	45.1
WP_064824527.1\|1096307_1096925_+	hypothetical protein	NA	NA	NA	NA
WP_064824528.1\|1096915_1098514_+	hypothetical protein	M4QM83	Sulfitobacter_phage	2.1e-135	49.2
WP_167377205.1\|1098513_1098984_+	N-acetyltransferase	NA	NA	NA	NA
WP_064824530.1\|1098980_1100000_+\|tail	tail fiber domain-containing protein	M4NM77	Sulfitobacter_phage	1.1e-76	51.7
WP_064824531.1\|1100000_1102235_+	hypothetical protein	A0A0E3JI98	Rhodoferax_phage	3.1e-15	37.0

DBSCAN-SWA_2

1921566 : 1928829

uncultured_Mediterranean_phage(100.0%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_064810187.1\|1921566_1922580_+	beta-N-acetylhexosaminidase	A0A1B1IVS3	uncultured_Mediterranean_phage	2.1e-24	42.6
WP_064810188.1\|1922598_1923456_+	segregation/condensation protein A	A0A1B1IVW1	uncultured_Mediterranean_phage	5.6e-34	37.2
WP_064810189.1\|1923452_1924157_+	SMC-Scp complex subunit ScpB	A0A1B1IVT7	uncultured_Mediterranean_phage	9.6e-40	46.4
WP_011425113.1\|1924339_1924531_+	twin-arginine translocase TatA/TatE family subunit	A0A1B1IVR9	uncultured_Mediterranean_phage	6.8e-09	72.1
WP_064810190.1\|1924582_1925197_+	twin-arginine translocase subunit TatB	NA	NA	NA	NA
WP_064802115.1\|1925193_1926021_+	twin-arginine translocase subunit TatC	A0A1B1IVR7	uncultured_Mediterranean_phage	5.2e-53	46.1
WP_064810191.1\|1926117_1927401_+\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	1.1e-97	46.2
WP_064810192.1\|1927405_1928179_+	5'/3'-nucleotidase SurE	A0A1B1ITZ2	uncultured_Mediterranean_phage	1.4e-23	30.2
WP_064810193.1\|1928175_1928829_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	6.8e-16	35.7

DBSCAN-SWA_3

2213565 : 2222875

uncultured_Mediterranean_phage(83.33%)

transposase,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_064802585.1\|2213565_2216355_+	DNA gyrase subunit A	A0A1B1IVS2	uncultured_Mediterranean_phage	3.9e-76	42.2
WP_064809302.1\|2216490_2217861_-\|transposase	IS1182 family transposase	A0A1X9I5T2	Streptococcus_phage	1.7e-80	38.3
WP_003539654.1\|2218249_2218405_-	hypothetical protein	NA	NA	NA	NA
WP_064810391.1\|2218939_2219452_+	pantetheine-phosphate adenylyltransferase	A0A1B1IVQ3	uncultured_Mediterranean_phage	5.3e-24	37.2
WP_064810392.1\|2219478_2220051_+	peptidylprolyl isomerase	A0A1B1IVS0	uncultured_Mediterranean_phage	1.3e-42	54.7
WP_064802591.1\|2220079_2220589_+	peptidylprolyl isomerase	A0A1B1IVS0	uncultured_Mediterranean_phage	9.3e-45	58.8
WP_064810393.1\|2220661_2221744_+\|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	NA	NA	NA	NA
WP_064810394.1\|2221744_2222875_+\|tRNA	tRNA guanosine(34) transglycosylase Tgt	A0A1B1IVQ4	uncultured_Mediterranean_phage	3.1e-101	52.9

DBSCAN-SWA_4

3136940 : 3146233

Rhizobium_phage(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_064824585.1\|3136940_3137993_-	ATP-dependent DNA ligase	A0A068CDF3	Rhizobium_phage	6.7e-138	68.1
WP_064824587.1\|3138678_3139431_+	SOS response-associated peptidase family protein	A0A291AUP1	Sinorhizobium_phage	3.9e-39	39.7
WP_064824588.1\|3139435_3139660_+	hypothetical protein	NA	NA	NA	NA
WP_064824589.1\|3139656_3140031_+	thermonuclease family protein	G8DH70	Emiliania_huxleyi_virus	6.9e-21	46.2
WP_064824604.1\|3140034_3140340_-	hypothetical protein	NA	NA	NA	NA
WP_064815511.1\|3140495_3140774_-	hypothetical protein	NA	NA	NA	NA
WP_064824590.1\|3140836_3142696_-	AAA family ATPase	R4TQL5	Phaeocystis_globosa_virus	1.5e-23	28.3
WP_064824591.1\|3142903_3143239_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_064824592.1\|3143693_3144233_-	ATP-dependent DNA helicase RecQ	A0A2K9L3P7	Tupanvirus	7.9e-26	44.5
WP_064810888.1\|3144232_3146233_-	DNA primase	A0A0K1LMQ9	Caulobacter_phage	1.4e-88	41.4

DBSCAN-SWA_5

4041325 : 4051653

Mycobacterium_phage(28.57%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_064811420.1\|4041325_4042036_+	7-cyano-7-deazaguanine synthase QueC	A0A2P1JXV3	Rhodococcus_phage	3.3e-48	47.3
WP_064805162.1\|4042035_4042392_+	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA
WP_064811421.1\|4042388_4043117_+	7-carboxy-7-deazaguanine synthase QueE	A0A1U9WRB6	Streptococcus_virus	1.8e-41	37.8
WP_064811422.1\|4043225_4044449_-	adenylate/guanylate cyclase domain-containing protein	M1HLN3	Pelagibacter_phage	1.1e-14	30.3
WP_064811423.1\|4044552_4045527_-	class 1b ribonucleoside-diphosphate reductase subunit beta	R4TBI6	Mycobacterium_phage	2.8e-138	74.8
WP_064811424.1\|4045720_4047889_-	class 1b ribonucleoside-diphosphate reductase subunit alpha	A8E2R1	Enterococcus_phage	1.7e-212	52.1
WP_064811425.1\|4047867_4048281_-	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA	NA	NA	NA
WP_064811426.1\|4048294_4048516_-	glutaredoxin-like protein NrdH	V5UN81	Mycobacterium_phage	6.7e-16	52.1
WP_064811772.1\|4049415_4051653_-	cadmium-translocating P-type ATPase	E4ZFI9	Streptococcus_phage	6.8e-124	40.8

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP013502

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP013500

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection