CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Prophage number
NZ_CP013555	Rhizobium phaseoli strain N931 plasmid pRphaN931c, complete sequence	0 crisprs	NA	1
NZ_CP013556	Rhizobium phaseoli strain N931 plasmid pRphaN931d, complete sequence	0 crisprs	csa3	0
NZ_CP013552	Rhizobium phaseoli strain N931 chromosome, complete genome	2 crisprs	WYL,cas3,csa3,DEDDh	3
NZ_CP013553	Rhizobium phaseoli strain N931 plasmid pRphaN931a, complete sequence	0 crisprs	NA	0
NZ_CP013554	Rhizobium phaseoli strain N931 plasmid pRphaN931b, complete sequence	0 crisprs	DEDDh	0

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

257302 : 298797

Stx2-converting_phage(100.0%)

transposase,plate

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_008536038.1\|257302_258529_-\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA
WP_008536039.1\|258492_260379_-\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
WP_004680427.1\|260378_260882_-\|plate	type VI secretion system baseplate subunit TssE	NA	NA	NA	NA
WP_004680426.1\|260968_261502_-	type VI secretion system tube protein Hcp	NA	NA	NA	NA
WP_004680425.1\|261617_263105_-	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA
WP_016737476.1\|263107_263662_-	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA
WP_004680423.1\|263697_264690_-	type VI secretion system protein TssA	NA	NA	NA	NA
WP_064812016.1\|266388_268668_-	hypothetical protein	NA	NA	NA	NA
WP_016737477.1\|271224_272580_+\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA
WP_016737478.1\|272641_273808_+	FHA domain-containing protein	NA	NA	NA	NA
WP_008536065.1\|273807_275097_+	type VI secretion system protein TssL	NA	NA	NA	NA
WP_064823781.1\|275106_278712_+	type VI secretion system membrane subunit TssM	NA	NA	NA	NA
WP_012489526.1\|279008_280625_+	hypothetical protein	NA	NA	NA	NA
WP_170960111.1\|280795_280963_+	hypothetical protein	NA	NA	NA	NA
WP_012489527.1\|282304_283315_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_008536079.1\|286333_287221_-	hypothetical protein	NA	NA	NA	NA
WP_064823783.1\|292273_292660_+	IS66 family insertion sequence hypothetical protein	NA	NA	NA	NA
WP_064823784.1\|292656_293010_+	IS66 family insertion sequence element accessory protein TnpB	NA	NA	NA	NA
WP_064823785.1\|293078_294632_+\|transposase	IS66 family transposase	A0A0P0ZEB3	Stx2-converting_phage	3.2e-96	39.5
WP_190304494.1\|294692_294923_-	hypothetical protein	NA	NA	NA	NA
WP_064820024.1\|297375_298797_-\|transposase	ISNCY-like element ISRel10 family transposase	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP013552

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP013552_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP013552_1

1288775-1288880

Orphan

Consensus_repeat	Method
GCGAACGCCCGAAGCGCAAGCGCAGGGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP013552_1

>merge|NZ_CP013552|1|1288775-1288880|CRISPRCasFinder
GCGAACGCCCGAAGCGCAAGCGCAGGGCCGGGGCGGGTCCGGCGCAGCGGGCGCAATCGATCCAGTGAATTTGCAGCTGCGAACGCCCGGAGCGCAAGCGCAGGGC

>NZ_CP013552|1|1|1288775-1288880|CRISPRCasFinder
GCGAACGCCCGAAGCGCAAGCGCAGGGC	CGGGGCGGGTCCGGCGCAGCGGGCGCAATCGATCCAGTGAATTTGCAGCT
GCGAACGCCCGGAGCGCAAGCGCAGGGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP013552.1\|WP_064821638.1\|1297215_1298490_-\|multidrug-efflux-MFS-transporter	unknown	unknown	gnl\|CDD\|340949
NZ_CP013552.1\|WP_016734417.1\|1284246_1284711_-\|cupin-domain-containing-protein	unknown	unknown	gnl\|CDD\|369571
NZ_CP013552.1\|WP_010023895.1\|1279517_1279832_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013552.1\|WP_064821636.1\|1294994_1295828_+\|ammonia-dependent-NAD(+)-synthetase	unknown	unknown	gnl\|CDD\|234831
NZ_CP013552.1\|WP_064821630.1\|1287835_1288723_+\|branched-chain-amino-acid-aminotransferase	unknown	unknown	gnl\|CDD\|237362
NZ_CP013552.1\|WP_064821633.1\|1290680_1291922_+\|HlyD-family-secretion-protein	unknown	unknown	gnl\|CDD\|224482
NZ_CP013552.1\|WP_064821628.1\|1279844_1281362_-\|glucose-6-phosphate-dehydrogenase	unknown	unknown	gnl\|CDD\|237233
NZ_CP013552.1\|WP_012483117.1\|1281713_1282484_-\|trans-aconitate-2-methyltransferase	unknown	unknown	gnl\|CDD\|234970
NZ_CP013552.1\|WP_012483123.1\|1286544_1287585_-\|zinc-dependent-alcohol-dehydrogenase-family-protein	unknown	unknown	gnl\|CDD\|176221
NZ_CP013552.1\|WP_064821635.1\|1293640_1294831_+\|adenylate/guanylate-cyclase-domain-containing-protein	unknown	unknown	gnl\|CDD\|143636
NZ_CP013552.1\|WP_016734416.1\|1285486_1286371_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|223656
NZ_CP013552.1\|WP_064821629.1\|1284782_1285409_-\|cysteine-hydrolase	unknown	unknown	gnl\|CDD\|238496
NZ_CP013552.1\|WP_064821634.1\|1291994_1293614_+\|multidrug-efflux-MFS-transporter	unknown	unknown	gnl\|CDD\|129794
NZ_CP013552.1\|WP_064821631.1\|1288946_1289501_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013552.1\|WP_012483118.1\|1282571_1283846_-\|HlyC/CorC-family-transporter	unknown	unknown	gnl\|CDD\|224173
NZ_CP013552.1\|WP_064823097.1\|1295837_1296521_-\|glutathione-S-transferase-N-terminal-domain-containing-protein	unknown	unknown	gnl\|CDD\|182533
NZ_CP013552.1\|WP_064821632.1\|1289643_1290543_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176114
NZ_CP013552.1\|WP_010023896.1\|1278930_1279386_+\|NUDIX-domain-containing-protein	unknown	unknown	gnl\|CDD\|240044
NZ_CP013552.1\|WP_064821639.1\|1298603_1298945_+\|nuclear-transport-factor-2-family-protein	unknown	unknown	gnl\|CDD\|378915
NZ_CP013552.1\|WP_064821637.1\|1296636_1297254_+\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224228

Protein	Function_ID	Function_description	E-value
NZ_CP013552.1\|WP_064821638.1\|1297215_1298490_-\|multidrug-efflux-MFS-transporter	gnl\|CDD\|340949	cd17391, MFS_MdtG_MDR_like, Multidrug resistance protein MdtG and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily. This subfamily is composed of Escherichia coli multidrug resistance protein MdtG, Streptococcus pneumoniae multidrug resistance efflux pump PmrA, and similar multidrug resistance (MDR) transporters from bacteria. MDR transporters are drug/H+ antiporters (DHA) that mediate the efflux of a variety of drugs and toxic compounds, and confer resistance to these compounds. MdtG confers resistance to fosfomycin and deoxycholate. PmrA serves as an efflux pump for various substrates and is associated with fluoroquinolone resistance. MdtG-like MDR transporters belong to the bacterial MdtG-like and eukaryotic solute carrier 18 (SLC18) family of the Major Facilitator Superfamily (MFS) of transporters. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	1.19005e-148
NZ_CP013552.1\|WP_016734417.1\|1284246_1284711_-\|cupin-domain-containing-protein	gnl\|CDD\|369571	pfam07883, Cupin_2, Cupin domain. This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel).	3.98265e-11
NZ_CP013552.1\|WP_064821636.1\|1294994_1295828_+\|ammonia-dependent-NAD(+)-synthetase	gnl\|CDD\|234831	PRK00768, nadE, ammonia-dependent NAD(+) synthetase.	8.27029e-162
NZ_CP013552.1\|WP_064821630.1\|1287835_1288723_+\|branched-chain-amino-acid-aminotransferase	gnl\|CDD\|237362	PRK13356, PRK13356, branched-chain amino acid aminotransferase.	0
NZ_CP013552.1\|WP_064821633.1\|1290680_1291922_+\|HlyD-family-secretion-protein	gnl\|CDD\|224482	COG1566, EmrA, Multidrug resistance efflux pump [Defense mechanisms].	2.14409e-104
NZ_CP013552.1\|WP_064821628.1\|1279844_1281362_-\|glucose-6-phosphate-dehydrogenase	gnl\|CDD\|237233	PRK12853, PRK12853, glucose-6-phosphate dehydrogenase.	0
NZ_CP013552.1\|WP_012483117.1\|1281713_1282484_-\|trans-aconitate-2-methyltransferase	gnl\|CDD\|234970	PRK01683, PRK01683, trans-aconitate 2-methyltransferase; Provisional.	5.33668e-174
NZ_CP013552.1\|WP_012483123.1\|1286544_1287585_-\|zinc-dependent-alcohol-dehydrogenase-family-protein	gnl\|CDD\|176221	cd08260, Zn_ADH6, Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction.	0
NZ_CP013552.1\|WP_064821635.1\|1293640_1294831_+\|adenylate/guanylate-cyclase-domain-containing-protein	gnl\|CDD\|143636	cd07302, CHD, cyclase homology domain. Catalytic domains of the mononucleotidyl cyclases (MNC's), also called cyclase homology domains (CHDs), are part of the class III nucleotidyl cyclases. This class includes eukaryotic and prokaryotic adenylate cyclases (AC's) and guanylate cyclases (GC's). They seem to share a common catalytic mechanism in their requirement for two magnesium ions to bind the polyphosphate moiety of the nucleotide.	1.0167e-41
NZ_CP013552.1\|WP_016734416.1\|1285486_1286371_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|223656	COG0583, LysR, Transcriptional regulator [Transcription].	7.66148e-30
NZ_CP013552.1\|WP_064821629.1\|1284782_1285409_-\|cysteine-hydrolase	gnl\|CDD\|238496	cd01014, nicotinamidase_related, Nicotinamidase_ related amidohydrolases. Cysteine hydrolases of unknown function that share the catalytic triad with other amidohydrolases, like nicotinamidase, which converts nicotinamide to nicotinic acid and ammonia.	1.38604e-53
NZ_CP013552.1\|WP_064821634.1\|1291994_1293614_+\|multidrug-efflux-MFS-transporter	gnl\|CDD\|129794	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. [Cellular processes, Toxin production and resistance, Transport and binding proteins, Other].	1.85219e-104
NZ_CP013552.1\|WP_012483118.1\|1282571_1283846_-\|HlyC/CorC-family-transporter	gnl\|CDD\|224173	COG1253, TlyC, Hemolysins and related proteins containing CBS domains [General function prediction only].	1.2764e-129
NZ_CP013552.1\|WP_064823097.1\|1295837_1296521_-\|glutathione-S-transferase-N-terminal-domain-containing-protein	gnl\|CDD\|182533	PRK10542, PRK10542, glutathionine S-transferase; Provisional.	3.32835e-68
NZ_CP013552.1\|WP_064821632.1\|1289643_1290543_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|176114	cd08422, PBP2_CrgA_like, The C-terminal substrate binding domain of LysR-type transcriptional regulator CrgA and its related homologs, contains the type 2 periplasmic binding domain. This CD includes the substrate binding domain of LysR-type transcriptional regulator (LTTR) CrgA and its related homologs. The LTTRs are acting as both auto-repressors and activators of target promoters, controlling operons involved in a wide variety of cellular processes such as amino acid biosynthesis, CO2 fixation, antibiotic resistance, degradation of aromatic compounds, nodule formation of nitrogen-fixing bacteria, and synthesis of virulence factors, to name a few. In contrast to the tetrameric form of other LTTRs, CrgA from Neisseria meningitides assembles into an octameric ring, which can bind up to four 63-bp DNA oligonucleotides. Phylogenetic cluster analysis further showed that the CrgA-like regulators form a subclass of the LTTRs that function as octamers. The CrgA is an auto-repressor of its own gene and activates the expression of the mdaB gene which coding for an NADPH-quinone reductase and that its action is increased by MBL (alpha-methylene-gamma-butyrolactone), an inducer of NADPH-quinone oxidoreductase. The structural topology of this substrate-binding domain is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	8.85256e-75
NZ_CP013552.1\|WP_010023896.1\|1278930_1279386_+\|NUDIX-domain-containing-protein	gnl\|CDD\|240044	cd04688, Nudix_Hydrolase_29, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required.	6.70671e-27
NZ_CP013552.1\|WP_064821639.1\|1298603_1298945_+\|nuclear-transport-factor-2-family-protein	gnl\|CDD\|378915	pfam12680, SnoaL_2, SnoaL-like domain. This family contains a large number of proteins that share the SnoaL fold.	1.24051e-07
NZ_CP013552.1\|WP_064821637.1\|1296636_1297254_+\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	5.33829e-07

>NZ_CP013552.1|WP_064821630.1|1287835_1288723_+|branched-chain-amino-acid-aminotransferase
MAVDTSPRSTTWTHVDGEWLPGNPPLIGPTSHAMWLGSTVFDGARWFDGIAPDLDLHCQRVNRSALAMGLKPVKSAEEIAALAWEGVGRFDGATAIYIKPMYWGEHGSAGSIVSVDAESTRFALCLFEAPMGGHAGTSLTVSPYRRPSPETAMTEAKTGSLYPNSGRMIAEAHSRGFDNALVRDLNGNVVETASSNVFLVRDGVVMTPAANRTFLAGITRARVIGLLRKAGFDVVEATLSVEDFLAADEIFTTGNYSKVVGVTRLDDCNLQEGPVTRKALELYMNWAHGRTESEE
>NZ_CP013552.1|WP_012483123.1|1286544_1287585_-|zinc-dependent-alcohol-dehydrogenase-family-protein
MKAMYYEAFEQAPEIRTLPDPTPTEDGVVISVGASGLCRSDWHGWMGHDPDIRLPHVPGHELAGRVVATGRGVMRFKVGDRVTVPFVSGCGHCSECHSGNQQVCPNQFQPGFTHWGSFSEYVAIDYADTNLVHLPDTIDDATAASLGCRFATSFRAVADHARTGPGEWIAVHGCGGVGLSAIMIATALGANAIGIDISEEKLAFARECGAVATVNAASVADVAEAVREITKGGAHVSIDALGHPATCFNSIKNLRRRGRHVQVGLMLGEYATPQIPMAQVISNELEIYGSHGMQAWRYDAMLSMLAAGKIAPQKLIGRRISLEEAVPALMALDKAEGTGISVITQF
>NZ_CP013552.1|WP_016734416.1|1285486_1286371_+|LysR-family-transcriptional-regulator
MAEQKRTGLDWEDLRFFAALARHRSLSATARALKVNHATVARRIAALEQNLGVNLFERRADGYALSRQGSAILAETGAMEAAAAAIRDRLDAEDGPRGRVRLTTIRSLADLVLAPNLAEILDGLPHVELEIVTDIKVVSLAQREADIALRLGHPGDSELSGRRVATIRYGFFGSKETRNAFEMGDLPPLITYDGESQGVAEARWLDHNFPDHPVSLRSGSNAVQAQAAASGLGLAMLPLYLAATVSGLEPVAFAAPMPERELWMLTPAELAQVPRVRVVLDRLSRLFVRHKHLF
>NZ_CP013552.1|WP_064821629.1|1284782_1285409_-|cysteine-hydrolase
MAPLTLLQHAGVTPKPIELAKSVLVIIDAQNEYVDGKLPLPGIGPAIVEIGRLLDAARENGVPVFHVVHHAPPTGSLFAAGSQAAEIIPALAPVDGERVIAKTLPNAFAGTTLAAALTDLAEGSGRTDIILVGFMTHMCVSATARAALDLGIRAIVVASAAATRALPDPLGGVISADLVHRTALAELADRFATVVPDAGSVVKDGVKV
>NZ_CP013552.1|WP_016734417.1|1284246_1284711_-|cupin-domain-containing-protein
MMSNSFVTMPAGKEAKRFFVLGDRIERQVRIRGTWLNIFDVTVPPGSRTPKHAHASPEVFRILEGGLTIWRLTDNGPEEIEASAGDIVTIAPFMVHCYANRGDVPAVFSAIVDRDMAEFIEAEGTSEPLKAPSPETIARMTAAANAYGITILAA
>NZ_CP013552.1|WP_012483118.1|1282571_1283846_-|HlyC/CorC-family-transporter
MFLEIGIVALLTILNGVLAMSELAVVSSRTARLKVLSDNGSKGAAQAIKLAENPGRFLSTVQIGITLVGVLSGAFSGATLGGRLTAWLETQGMSSAVADAVGVGSVVVAITYLSLIVGELVPKQIALREPEAVAARVAPAMAVLSKIALPLVWLLNASGNLVLKLLGQSGKGGDNVSDEEIKTVLAEAQSAGVIESEESAMISGVMRLADRTARALMTPRRDVEIIDIDDSLDEIRAQLHRTKRSRLPVRKGSSDEVIGILPVKDFYDAMSEHGSADIKALTQDIPVVSDLATAINVIEAIRKSPVHMVLVFDEYGHFEGIVSSGDILEAIMGALQEGPVDEQAIARRDDGSYLVSGWTPIDEFAEFLNLKLDDDLEYQTVAGLVLEELKHLPELGESFTRDGWRFEVIDLDGRRVDKILVSAE
>NZ_CP013552.1|WP_012483117.1|1281713_1282484_-|trans-aconitate-2-methyltransferase
MAWSAQQYVKFEDERTRPARDLLAQVPLQSLRRAVDLGCGPGNSTELIIERFGAEGVSGLDSDVNMLEAARKRLPGTAFVEADLGSWQPTEPADLLFANAVFQWLPDHLDIFDRLMDGLSPGGVLAVQMPDNLGEASHLAMEESAHAGPWKAAFEEKSVRRQPLAPPSAYYSRLIGKAARIDIWHTIYNHPMADAADIVEWVKGTGLMPYLAHAGEAYREAFLADYLERIEKAYPKMSDGRVMLRFPRIFMVAVKK
>NZ_CP013552.1|WP_064821628.1|1279844_1281362_-|glucose-6-phosphate-dehydrogenase
MDAAPTPPVTLVIFGATGDLTRRLLVPAIINLTRQRLVGEDLNILGIGIEPGDDEFLRGRLDAFLSHLNGDKQTVKDEAWESLRRRISYTSGDFTKDDIFLEIGRRLGPDANAAFYLAVPPSFFGSIVEKLAAHGLTDEKDGTFRRVAIEKPFGTDLASAKALNAQILAQIDESQTYRLDHFLGKETVQNLMTARFANMIIESLWNSRYIDHVQITAAEIVDVGSRGKFYDATGALRDMVPNHLFQLLAMIAMEPPNSFDAEAIRNEKSKVLKALRIYTPDEAKTHGVRGAYTAGPLNGVELPAYRDTKDVSPDSRTETYVALKLYADTWRWAGVPFYLRTGKALTARDTEIVITFQPVPFAQFRETEVSRRLPPNRLVIQVQPDEGMSMEISIKSPGLSVDTTPVSLDFRYADKFDIGKTTGYESLLYDLFIGDQTLFQRADGIEAGWAAVQPFLDIWAKDPSTPEPYAPGSMGPACADRLIERDGRQWHELGVLLHHNGKDAK
>NZ_CP013552.1|WP_010023895.1|1279517_1279832_+|hypothetical-protein
MRRFIAATSIALLSLSAPVLAQSNMGMDASGRIDGTPPLGTAPGVETQSGLVIPLDSIETGSVDNGAPSGRVDWARCPPRKARGALATEGGNSGASTSAACRDR
>NZ_CP013552.1|WP_010023896.1|1278930_1279386_+|NUDIX-domain-containing-protein
MTVWRPPQQIRVKVIGLAWRQDRLLAAEVEDDGGHIKGIRPLGGSIEFGETREQALQREFREELETAIRIVGPWHLLENIFEHHGATGHEYIFAADVELADASLYARDEIRYSELDETAATARWFGRDIVRDAGIDLYPTGLEKLLSRWRD
>NZ_CP013552.1|WP_064821631.1|1288946_1289501_-|hypothetical-protein
MVIAAFLGIAYAAYDRALDFWPLGFANGLRGLFDLLGGLLLALLIVGILLVWFVSAIAALYDRRFRGMASSFIAIIIVPVCFGTIVTVPLFDPWLWYAIFNKSSFEAAAATSGSSQNSPKFAIIDARDVSTGIAGVGLNHFVALIYSEGDPHKHVYNDSDEEKLGSNSVLTHLYGNFYRRDEYW
>NZ_CP013552.1|WP_064821632.1|1289643_1290543_-|LysR-family-transcriptional-regulator
MDRLTSLAVFGRVVECGGFSAAARRLNMSVTMVGNHVQSLEERLGVRLLNRTTRKVSLTETGKYYYERSSQILAELDEADRTASALSTTPRGTLKVYTSGSIVRFLLPVFSEYMELYPSISVDFSVGERMVDMIEDGYDLVIRTLPPDSSLIARKLTPWRHMLVCSPAYVDSHPLPLKPAEIADHNCLQYAYYPYGDEWRFEDSDGRQESVKIGGNVVSNNAEMLRFLTLNGRGLFLAPSFVVFDDIAEGRLIKIMPDYRPVEFTINAVYPNRSHLPTKVRLFIDLLAERFAEHRKWMT
>NZ_CP013552.1|WP_064821633.1|1290680_1291922_+|HlyD-family-secretion-protein
MVELPRKQVFESAGEAERILAEEAARAPAAEAPATPMTGTPVAQAPEKTGRRMLKRAVIAAALLAGAAFAGDFGYRYWTVGRFIESTDDAYVKADYTTVAPKVAGYIKQVLVNDNDQVRSGQVLARIDDRDFQAALSQARADVKAAEAAITNIDAQIALQQSVIQQAKATVDASQASLDFAVSDAARSARLITNGAGTQSRAEQTQSARDQAAAAVERDRAALVAAENKVPVLRTEREQAAAQRDRAAAAARQAELDLSYTDIVAAVDGTVGARSIRVGQYVTSGTQLMAVVPLHSVYVVANFKETQLTYVRPGQSVEIKVDSFPDIAIKGHVDSVSPASGLEFSLLPPDNATGNFTKIVQRIPVKIVIDDEALSGLLRSGMSVEPEVDTKAAQSEASQASGQAEEGSSGHAG
>NZ_CP013552.1|WP_064821634.1|1291994_1293614_+|multidrug-efflux-MFS-transporter
MATLQIAANGNSLARPAVAAPATPAVTSPLRIWSAVVGSTLGAFMAVLNIQIVNASLADIQGAIGAGTDDGGWISTSYLIAEIVVIPLSGWLARVFSLRNYLLANAILFLIFSVACAFAANLQQMIILRAIQGFAGGVLIPMAFTIIITLLPKAKQPIGLALFALSATFAPAIGPTIGGYLTENWGWEHIFYVNLVPGALMVGLLWASLDPAPMNLKLLSKGDWPGIITMAIGLAALQTVLEEGNKEDWFGSDFILRLSIIAAVSLTLFIVIELRAAHPLLNLRLLLRRNFGFGIVANFLLGIALYGSVFVLPIYLTRIQGYNSEQIGMVLAWTGIPQLLLIPLVPRLMKRFDVRLLIVIGFALFAASNFMNVHMTGDYASDQLFWPNIVRAVGQALVFTPLSAIATSGIEKENAGSASALFNMMRNLGGAVGIASLQTFLSKREQYHSNILTHSVSVFEEATRDRIARLTAYFMSHGVSDQALASHKAMVAIALKIRKQANIMAFSDAFFLLGVALVVALLAILLLKKPGQLSGGGAH
>NZ_CP013552.1|WP_064821635.1|1293640_1294831_+|adenylate/guanylate-cyclase-domain-containing-protein
MTTAIYTPAAERQTNAVGTGALLAIIEWLSGDECHALDEAGLVSGLGRRLQALGLPVDRLTLHLMTLHPELVGRTIAWAPGEPVEIHDREHGARVAISNTPLRKVMESRELLVVGPGESVHGRWRHIDVFADRGLMQLVIAPLCNIDGPVGAAVFGTRRPAGFTASERQVIERILPALRNTSELRILRQVELSLLDTYVGPLTASRILAGRIRQGEIESMEAALLLCDLRGFTELSNKLPGGTVLGLLNAYFDRVVPAITREGGEVLKFMGDAVLAFFPGYAAAHACGAALASARAILDEIDRFQYDGIGVKAGIALHYGEVSYGNIGSGRRLDFTLIGRDVNLVSRIQTACSELGEALLMSEPFREKAGAGDVMSVGAQGLKGFAEPVELFTIVR
>NZ_CP013552.1|WP_064821636.1|1294994_1295828_+|ammonia-dependent-NAD(+)-synthetase
MTVLFDEQAEIIRELGVATEIDPEREIQRRTAFLKDYLVGSGMRGYVLGISGGVDSLTAALLAQKAVRELRDGGYAAEFIAVRLPYGIQADEADAVKALATIDPDRSMVVNIKAAADAMLAAAQDGGLAFADAGRQDFILGNIKARQRMIAQFALAGALGGLVIGTDHAAEAVMGFFTKFGDGAADILPLAGLNKRRVRLLAKRLGAPDELIFKVPTADLEDQRPLRPDEEAYGVSYDEIDDFLEGKPVGEIARRRILAAYRATAHKRALPVAVNAL
>NZ_CP013552.1|WP_064823097.1|1295837_1296521_-|glutathione-S-transferase-N-terminal-domain-containing-protein
MKLYMNAAACSLSPHIVCRELGLDIELVEVNRETHRTSDGKDYLAINGNGYVPALMLDDGKVLTEGPAIAQFLADSVPQGAAMLPEVGNLRRNEVQSYLNFISAELHKPMVLLFEPAYAGVHERIRAQVSKRLSWLSGRFAGPYLTGEAFTVADAYLFVCLNWSPWTQIDLKQWPALHGFMARVAARPKVREALRVEDLQAFDVDGVFFAPNAYLASSDWTGSPVQP
>NZ_CP013552.1|WP_064821637.1|1296636_1297254_+|TetR/AcrR-family-transcriptional-regulator
MKDEKKRGRPRAFDAKAALGKARDVFWDRGFAAASLDNLSAATNLNRPSLYGAFGDKEALYLDTLEAYRRDGMDALAQALDPSLPLRNNLARVYESALAIYLHGATAARGCLLIGTATAEAVERERVREVLGRSLSDFDGEIEKRMRLAVERGELPESADPQMLARLASAVMHSLAVRARAGDSRETLEAIARSGVELICGSARS
>NZ_CP013552.1|WP_064821638.1|1297215_1298490_-|multidrug-efflux-MFS-transporter
MTDTQLDAVSVKAGSIHWKRNLTVSLIGSFTTIVAMTLLLPFLPLYVEELGVADHAAIVQWSGIAYGATFLAAALVAPLWGRLGDIYGRKLMLVRASLGMTLAISLMGMAGNVWQLVALRLFVGLAGGYSSGSMVLVATQTPKERSAWALGVLSCGIMAGNLVGPLIGGVLPPVIGIRGTFLAAGAMIFLAFLATALLIKEEKSPARKQAAKASGGWKSVPDKGPVVAMLATGMLLMFANMSIEPIITVYVAQIVPDATEVTKISGLVMSAAALGSILSASRLGRLADRIGHWPVISGALAVAGLLLIPQAFVTSSWQLIVLRFLMGAALGGLLPCIAAVIRHSVPDSAAGSILGLSVSSQYVGQVAGPILGGFVGGHVGMRAVFLGTAVLLVAGGAYAWIVRPKTTETGAGSASRAAADQFDA
>NZ_CP013552.1|WP_064821639.1|1298603_1298945_+|nuclear-transport-factor-2-family-protein
MNDMRTRQQTVRDLYAAYLDDRKDIVGAMLTEDFTFSSPRDDHIDRAAYFERCWPKQPLFRRIDIEFLAIDGNEAAVRYRAEKLDGASFGNMESLRFRGGKIASVEVYFGRDL

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Crispr_ID: NZ_CP013552_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP013552_2

1933236-1933324

Orphan

Consensus_repeat	Method
GCCGCTCCGAAGAAGAAGGCTGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP013552_2

>merge|NZ_CP013552|2|1933236-1933324|CRISPRCasFinder
GCCGCTCCGAAGAAGAAGGCTGCCGCCAAGACCGAAGCCGCCGAGGCTGGCGAAGGCGAGGAAGCCGCCGCTCCGAAGAAGAAGGCTGC

>NZ_CP013552|2|2|1933236-1933324|CRISPRCasFinder
GCCGCTCCGAAGAAGAAGGCTGC	CGCCAAGACCGAAGCCGCCGAGGCTGGCGAAGGCGAGGAAGCC
GCCGCTCCGAAGAAGAAGGCTGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP013552.1\|WP_012483613.1\|1929741_1930845_+\|DUF2157-domain-containing-protein	unknown	unknown	gnl\|CDD\|227209
NZ_CP013552.1\|WP_081282788.1\|1939777_1939903_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|178801
NZ_CP013552.1\|WP_004678846.1\|1924917_1925304_+\|Mth938-like-domain-containing-protein	unknown	unknown	gnl\|CDD\|226260
NZ_CP013552.1\|WP_004673842.1\|1943913_1944087_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013552.1\|WP_064821909.1\|1930841_1931432_+\|GDYXXLXY-domain-containing-protein	unknown	unknown	gnl\|CDD\|379571
NZ_CP013552.1\|WP_012483619.1\|1939928_1941116_-\|alpha-hydroxy-acid-oxidizing-protein	unknown	unknown	gnl\|CDD\|376451
NZ_CP013552.1\|WP_004678848.1\|1921983_1922331_+\|preprotein-translocase-subunit-YajC	unknown	unknown	gnl\|CDD\|224775
NZ_CP013552.1\|WP_016732905.1\|1935473_1937249_-\|radical-SAM-protein	unknown	unknown	gnl\|CDD\|214792
NZ_CP013552.1\|WP_064821907.1\|1925306_1926164_+\|phytoene/squalene-synthase-family-protein	unknown	unknown	gnl\|CDD\|224478
NZ_CP013552.1\|WP_037138403.1\|1941218_1942043_-\|DNA-repair-protein-RadC	unknown	unknown	gnl\|CDD\|178801
NZ_CP013552.1\|WP_004678838.1\|1928700_1928847_-\|DUF1127-domain-containing-protein	unknown	unknown	gnl\|CDD\|227744
NZ_CP013552.1\|WP_064821906.1\|1922375_1924913_+\|protein-translocase-subunit-SecDF	unknown	unknown	gnl\|CDD\|237805
NZ_CP013552.1\|WP_004678841.1\|1928257_1928401_-\|DUF1127-domain-containing-protein	unknown	unknown	gnl\|CDD\|227744
NZ_CP013552.1\|WP_064821908.1\|1926722_1928159_-\|methylenetetrahydrofolate--tRNA-(uracil(54)--C(5))-methyltransferase-(FADH(2)-oxidizing)-TrmFO	unknown	unknown	gnl\|CDD\|235416
NZ_CP013552.1\|WP_064821912.1\|1943123_1943783_+\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224228
NZ_CP013552.1\|WP_004673840.1\|1942050_1942887_-\|type-I-methionyl-aminopeptidase	unknown	unknown	gnl\|CDD\|235576
NZ_CP013552.1\|WP_004673833.1\|1934957_1935380_+\|nuclear-transport-factor-2-family-protein	unknown	unknown	gnl\|CDD\|226158
NZ_CP013552.1\|WP_037117799.1\|1926234_1926702_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013552.1\|WP_012483618.1\|1938272_1939679_-\|Si-specific-NAD(P)(+)-transhydrogenase	unknown	unknown	gnl\|CDD\|235373
NZ_CP013552.1\|WP_064821911.1\|1937409_1938213_-\|endonuclease/exonuclease/phosphatase-family-protein	unknown	unknown	gnl\|CDD\|377028

Protein	Function_ID	Function_description	E-value
NZ_CP013552.1\|WP_012483613.1\|1929741_1930845_+\|DUF2157-domain-containing-protein	gnl\|CDD\|227209	COG4872, COG4872, Predicted membrane protein [Function unknown].	2.93122e-42
NZ_CP013552.1\|WP_081282788.1\|1939777_1939903_-\|hypothetical-protein	gnl\|CDD\|178801	PRK00024, PRK00024, DNA repair protein RadC.	1.20555e-08
NZ_CP013552.1\|WP_004678846.1\|1924917_1925304_+\|Mth938-like-domain-containing-protein	gnl\|CDD\|226260	COG3737, COG3737, Uncharacterized conserved protein [Function unknown].	1.54923e-59
NZ_CP013552.1\|WP_064821909.1\|1930841_1931432_+\|GDYXXLXY-domain-containing-protein	gnl\|CDD\|379571	pfam14345, GDYXXLXY, GDYXXLXY protein. This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 171 and 199 amino acids in length. It contains a conserved GDYXXLXY motif.	1.25756e-42
NZ_CP013552.1\|WP_012483619.1\|1939928_1941116_-\|alpha-hydroxy-acid-oxidizing-protein	gnl\|CDD\|376451	pfam01070, FMN_dh, FMN-dependent dehydrogenase.	3.32695e-157
NZ_CP013552.1\|WP_004678848.1\|1921983_1922331_+\|preprotein-translocase-subunit-YajC	gnl\|CDD\|224775	COG1862, YajC, Preprotein translocase subunit YajC [Intracellular trafficking and secretion].	4.2566e-32
NZ_CP013552.1\|WP_016732905.1\|1935473_1937249_-\|radical-SAM-protein	gnl\|CDD\|214792	smart00729, Elp3, Elongator protein 3, MiaB family, Radical SAM. This superfamily contains MoaA, NifB, PqqE, coproporphyrinogen III oxidase, biotin synthase and MiaB families, and includes a representative in the eukaryotic elongator subunit, Elp-3. Some members of the family are methyltransferases.	2.21623e-21
NZ_CP013552.1\|WP_064821907.1\|1925306_1926164_+\|phytoene/squalene-synthase-family-protein	gnl\|CDD\|224478	COG1562, ERG9, Phytoene/squalene synthetase [Lipid metabolism].	3.68533e-59
NZ_CP013552.1\|WP_037138403.1\|1941218_1942043_-\|DNA-repair-protein-RadC	gnl\|CDD\|178801	PRK00024, PRK00024, DNA repair protein RadC.	2.32136e-107
NZ_CP013552.1\|WP_004678838.1\|1928700_1928847_-\|DUF1127-domain-containing-protein	gnl\|CDD\|227744	COG5457, COG5457, Uncharacterized conserved small protein [Function unknown].	7.56647e-09
NZ_CP013552.1\|WP_064821906.1\|1922375_1924913_+\|protein-translocase-subunit-SecDF	gnl\|CDD\|237805	PRK14726, PRK14726, protein translocase subunit SecDF.	0
NZ_CP013552.1\|WP_004678841.1\|1928257_1928401_-\|DUF1127-domain-containing-protein	gnl\|CDD\|227744	COG5457, COG5457, Uncharacterized conserved small protein [Function unknown].	9.51621e-12
NZ_CP013552.1\|WP_064821908.1\|1926722_1928159_-\|methylenetetrahydrofolate--tRNA-(uracil(54)--C(5))-methyltransferase-(FADH(2)-oxidizing)-TrmFO	gnl\|CDD\|235416	PRK05335, PRK05335, tRNA (uracil-5-)-methyltransferase Gid; Reviewed.	0
NZ_CP013552.1\|WP_064821912.1\|1943123_1943783_+\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	1.09869e-08
NZ_CP013552.1\|WP_004673840.1\|1942050_1942887_-\|type-I-methionyl-aminopeptidase	gnl\|CDD\|235576	PRK05716, PRK05716, methionine aminopeptidase; Validated.	3.87967e-163
NZ_CP013552.1\|WP_004673833.1\|1934957_1935380_+\|nuclear-transport-factor-2-family-protein	gnl\|CDD\|226158	COG3631, COG3631, Ketosteroid isomerase-related protein [General function prediction only].	1.35936e-11
NZ_CP013552.1\|WP_012483618.1\|1938272_1939679_-\|Si-specific-NAD(P)(+)-transhydrogenase	gnl\|CDD\|235373	PRK05249, PRK05249, Si-specific NAD(P)(+) transhydrogenase.	0
NZ_CP013552.1\|WP_064821911.1\|1937409_1938213_-\|endonuclease/exonuclease/phosphatase-family-protein	gnl\|CDD\|377028	pfam03372, Exo_endo_phos, Endonuclease/Exonuclease/phosphatase family. This large family of proteins includes magnesium dependent endonucleases and a large number of phosphatases involved in intracellular signalling. This family includes: AP endonuclease proteins EC:4.2.99.18, DNase I proteins EC:3.1.21.1, Synaptojanin an inositol-1,4,5-trisphosphate phosphatase EC:3.1.3.56, Sphingomyelinase EC:3.1.4.12, and Nocturnin.	9.60261e-13

>NZ_CP013552.1|WP_064821909.1|1930841_1931432_+|GDYXXLXY-domain-containing-protein
MSSLMARLQSGKGYLLSAVIVAGLQTIILGMIIQSRASILGNGAEVLLKTAPVDPRDFLRGDYVVLNYDISSVPVQTVSGGIPAEPGERTLWVRLNKQADGFWTVTESSFQRLPPQPETVILRSQPFYSGGLAAGDSIRVEYGIERYYVPEGQGKPLEEARNDGNVAIAVRVSPDGSAQIRSLLVDGKPVYDEPLY
>NZ_CP013552.1|WP_012483613.1|1929741_1930845_+|DUF2157-domain-containing-protein
MYRGRLERDLSLWVGKGLLGEETAGALLAEYDSRPASFSLGRVLMALAAVLLAAAVLLVVASNWEAIPRLVRVGAILALIWAVHIAAALMLARGAAAAAGGLLVIGAMSFGGAISLVGQMYHLSGDEQTVMYLWFAIATISAILFRSGAVVVVAGFLSWASFAVYLENHDTHWIGLDPWMAPVMAVIVIALVRYTGAARARHLAYLLLIGWLAWLYTLYEEIAVALAFAVGGMAGVVLTALPHPRIAPLVRSAGAAPAFYSFLVAAIGFLLLHIEIEQGWRLVVLGLATLAAAVLAIALHGRNNGAVRYLAYTTFAAEMLYLASVTVGSILGTSSLFLFSGLVVALVAWIVIRLERRFSANAREARA
>NZ_CP013552.1|WP_004678838.1|1928700_1928847_-|DUF1127-domain-containing-protein
MNITRSFNNWRKYRQTVTELGRMTNRELHDLGIDRSDIHRVAREASSR
>NZ_CP013552.1|WP_004678841.1|1928257_1928401_-|DUF1127-domain-containing-protein
MNPIRIAKSWLSYRRTLNELGSLSNQTLSDIGVSRYDIRNIASRSFR
>NZ_CP013552.1|WP_064821908.1|1926722_1928159_-|methylenetetrahydrofolate--tRNA-(uracil(54)--C(5))-methyltransferase-(FADH(2)-oxidizing)-TrmFO
MNTISYPPIHVVGGGLAGSEAAWQIASSGVPVILHEMRGVRGTDAHKTDGLAELVCSNSFRSDDATSNAVGVIHAEMRMAGSLIMAAADRHQVPAGGALAVDRDGFSEAVTKAIHDHPLITVVREEITGLPPRDWDLAIVATGPLTAPSLASAIQAQTGEESLAFFDAIAPIVYRDSIDMDICWYQSRYDKVGPGGTGKDYINCPMDEAQYNAFVDALIAGDTVGFKEWEGTPYFDGCLPIEVMAERGRETLRHGPMKPMGLTNAHNPTVKAYAVVQLRQDNALGTLYNMVGFQTKLKYGAQADIFRMIPGLESAEFARLGGLHRNTYINSPTLLDPSLTLKSRPGLRFAGQITGCEGYVESASVGLMAGRFAAAERKGEAILLPPATTALGSLLGHITGGHIVTDEEPGKRSFQPMNINFGLFPELEPGSIVKPEGVKRFRGKDKTIMKRQLIARRALADCATWLGQTSRAVESASA
>NZ_CP013552.1|WP_037117799.1|1926234_1926702_+|hypothetical-protein
MGIIVWCVLFAIVIFIAFVATRMAAQNKEDSLHDTGLAIIEFGRAFPNEAIRQLQATENGQAIFVRLHDNKAGLMRNMARHFSCHLIEPGRVRVVSSETGRGLAIDFLDAPNHNGKFEFASPKEASEVALWLLGNYIAEPDKDLPPGNISAANKQ
>NZ_CP013552.1|WP_064821907.1|1925306_1926164_+|phytoene/squalene-synthase-family-protein
MAEENIATNQDICLAMLRDSDRDRYLACLLSPQDRRGALAALYAFNAELARIRDLVHEPLPGEVRMQYWRDLLEGSAHGSTAANPVAAALLTAIETHRLPRKTLVDMIEARTFDLYDDPMETRLSLEGYAGETASALIQLASLVLSPQDAARSADAAGHAGVAQAIAGLLLLMPLHRRRGQLYIPLQILSATGLDRDSFLAGKDRPRIAAAVEAFAGLGREHLAKARGAGPIAPAVFPAFLPATLAEPVLLKAQRRGAQLFDRPLQPPQWRRQLAMALAAARRKI
>NZ_CP013552.1|WP_004678846.1|1924917_1925304_+|Mth938-like-domain-containing-protein
MAKGIEIRAAHFPGRAPIDTYGNGGFRFADMSHRGSILCLPSGIHGWDMDMSKPLSPENFRRVLEEAADIEVLLVGTGTELRRLPEELKQALKARGIASDPMSTGAAVRTFNIMLAEQRAVAAALIAV
>NZ_CP013552.1|WP_064821906.1|1922375_1924913_+|protein-translocase-subunit-SecDF
MLHFSRWKTLLIWLVAFAAVIAAPNLLGEAQRASLPGWLRNDRVMLGLDLQGGSHIVLKVERSDIVKDRLEEAVANVRNALRGAGIRYTGLTGNDRTVTVRITDPAETQKAVDRLKSLTTTSGDSAPGLTLQQSGEGQLSLQISDAGITADVASARTRSLDIVGRRIAGFGYENFLVHPDGDDRITVQVLGSVDAERLKNLLNQPAKLSFHLIDESMSGQEALNGRWPATSQVLYSLDDPPVPYLVDRTAFANAGNMVDIQPVVDPQTQDTSIAYRLDAEGSKRLAEVTGQNIGKHLAIVFDDQVMSEPAIEAAITNGEGRISANFSEDGVRDLAVMLRAGALPATLTSVEERSVSPTFGGESIVSGLVAGLVAVVLVAALMVALYRILGVIAVVSLFFNLILIIAALSLAGATLTLPGIAGIVLIVGMAVDSNVLIYERIREEEKTTHSFAEAVGRGFSRAFSTIVDANVTIFIAAVILFFLGSESIRGFAVTLAAGILTTVFTAFTLTRSIVAVWLARRHPRHLPKSVLTHLFEHANIRFMGIRRYVFTASAAISLIAMAAFATVGLQLGIDFTGGSLIEVTAKQGNADIADLRSRLNDLNLGEVGVERTGGPANARIRIASQGGGENAEQSAATLVRGELEADYDFRRVEVVGPAISGELTMMATLGIAAALSAILLYIWIRFEWQFAVGAIIATLHDVIIMLGLFVLTGIEFNLTSIAAVLTIVGYSLNDTVVVYDRMRENLKRYTKMPLPILIDASINQTLSRTVLTAATTLLALLALYLFGGDVMRSFAFAMLFGVALGTFSSIYIAAPVLIVFRLRPESPDGEESNKTDAGVKSGTVV
>NZ_CP013552.1|WP_004678848.1|1921983_1922331_+|preprotein-translocase-subunit-YajC
MFITPAFAQSATDTATGFGGSGFEMIILFVPLMVVWYFLLIRPQRAQAKKREETLKAIRRGDQVVTGGGLVGKVTKVVDDKEVEVEIAEGVRVRIVRSGISEVRVKGEPVKADAA
>NZ_CP013552.1|WP_004673833.1|1934957_1935380_+|nuclear-transport-factor-2-family-protein
MTEKHDMKKLVEEIYAVRGRGDIEGTLALIGDDCTFRMAGNTRLSPLSTEMGGQAFRQVIAQLITVWDLSKVNTTGIYVDEDEHIVFAHREGEVRHIPSGVSFYTEYVDKIHFRDGKPVKIVEFVDTLQVAETSQIIQIA
>NZ_CP013552.1|WP_016732905.1|1935473_1937249_-|radical-SAM-protein
MSHALEAARRRFQLILIKPSHYDDDGYVIRWWRAMIPSNSLAALYGIAAECAERQVLGPDTAIDITVIDETNTRVDFARLLAQFKRHGNFGMVALVGVQSNQYPRALDIARPFRNAGLPVSMGGFHVSGCLSMLDGQAVGLDACRDMGISMFAGEAEGRLDMVLRDAASGELKPLYNFMNDLPGIGGTPVPFLPKDNIQRTLGLSTSFDAGRGCPYQCSFCTIINVQGRKSRFRSADDVEKLVRMNWAQGIHKFFITDDNFARNKDWEAIFDRLIELKERDGIPLGLMIQVDTLCHKIPNFIEKSRRAGVTRVFIGLENVNPDNLTAAKKNQNKITEYRKMLLAWKAQGIMTLAGYILGFPADTPESIRRDIAIIQEELPLDVIEFFILTPLPGSEDHQVLWKKGVEMDADLNIYDVEHVCTAHPKMSKQQWEDIYHEAWSLYYSPDHMKTLLRRAVATGVPLARLVKVLVSFATTVPLENVHPLQSGLLRLKTPSERRPELPRENPLFFWPRFAWETFSKHASLAGTIVGLTISAFLISRDAKSKAYMDQALTPVADDEEETLSLFTKTSGGTAAVSHVRKVAQLTRGAN
>NZ_CP013552.1|WP_064821911.1|1937409_1938213_-|endonuclease/exonuclease/phosphatase-family-protein
MRIISLNAWGGSLHEALIDYVRQADADVLCLQEVLRAPDCGSGWSIYRDAGLELPQRANLFAEIGAALPGHDGFFCPTSRGMLFDGDAAIAAEFGLATFVRKSHSVIAQATDFVHGSFSAAGWGEHPRPRNAHCIRVFSHGNASAITIAHMHGLRDPAGKDDTPAREEQALALAGLVERVWPGNEGLVVCGDFNVLPDSSTFNILARLGLSDLVTGNGLVDTRTSYYLKQGRFADYMLVTPEVKVARFEAVATPEVSDHRALLLDIV
>NZ_CP013552.1|WP_012483618.1|1938272_1939679_-|Si-specific-NAD(P)(+)-transhydrogenase
MFQYDLVVVGSGPAGRRGAIQAAKLGKKVLVIEQGKRVGGVSVHTGTIPSKTLRETALNLSGWRERGFYGRSYRVKQEISAEDLRRRLLITLNHEVEVLEHQFARNRVHHMRGKASFVDASTLQVVKDDGEITQVSAASVLLAVGTKPFRPDYMPFDGKTVLDSDELLDIQELPRSMIVIGAGVIGIEYATIFSALDTAVTVIDPKATMLDFIDKEIVEDFTYQLRDRNMKLLLGQKADKVETLESGKVELTLDSGRRLTSDMVLFAAGRMGATDTLNLPAIGLEADSRGRLKVNPETFQTSVANVYAAGDVVGFPSLASTSMEQGRIAARVAIGAVAKEPQKYFPYGIYAVPEISTCGLTEEEMKERGIPYECGIARFRETSRGHIMGLDTGLLKLIFSLKTRRLLGVHIVGEGATELVHIGQAVLNLKGTVEYFVENTFNYPTLAEAYKIAGLDAWNRMGDIKSEL
>NZ_CP013552.1|WP_081282788.1|1939777_1939903_-|hypothetical-protein
MTKVIIDAAKALAIIVHDHIIIGKNGHVGLKGLTLIEHRSG
>NZ_CP013552.1|WP_012483619.1|1939928_1941116_-|alpha-hydroxy-acid-oxidizing-protein
MTIRSGNTDRSSRLCRDVLCLDDFEIKARRHLPKPLFGYIAGATETNASLRHNAEAFQAYAFRPRVLRDVSTRSTATSLFGKTHAVPFGIAPMGISALMAYRGDIVLAQGADQSGIPMIISGSSLIPLEEIAAASPQAWFQAYLPGEPDRIDALIDRVAAAGIDTLLLTVDTATLPNRENNVRAGFSTPLRPGLRLAWQGISHPRWTTGTFLRTIARHGIPHFENSYATRGAPIISSNVTRDFGKRDHLNWSHLERIRKRWSGKLVVKGIMHPEDAARAADTGADGVIVSNHGGRQLDGTASPLQVLPEIAARVGDSIAVMVDGGIRRGTDIMKALALGACFVFVGRPFLYAAAVAGLPGVLRAADILKTELYSNMALLGVTRVGDISADYITRA
>NZ_CP013552.1|WP_037138403.1|1941218_1942043_-|DNA-repair-protein-RadC
MAKRPAATSSDDELPFATEEPVADERSFFGGRPQNPTAPNARAALPASLSGPEHYHGHRERLRDRFREQGDTALADYEILELLLFRLIPRRDTKPIAKALIDRFGSLSGVFGAPAGLLTEVKGVGENVALDLKLISTVAHRTLKSEIRSKQVLSSWSSVIQYCHAAMAHETREQFRILFLDKRNVLIADEVQGRGTVDHTPVYPREVVKRALELSATAIILVHNHPSGDPTPSRADIDMTKVIIEAAKALDITVHDHIIIGKDGHVSLKGLKLI
>NZ_CP013552.1|WP_004673840.1|1942050_1942887_-|type-I-methionyl-aminopeptidase
MVNYIEASSAPPKNTGAIRLYDTQAFDGMRKACQLTARCLDALADIVKPGLLTDEIDRFVFDFGMDHGAYPATLNYRGYTKSTCTSINHVVCHGIPNDKPLREGDIVNIDVTFVLDGWHGDSSRMYPVGTVKRAAERLLEVTYESLMRGIAAVRPGARTGAIGEAIQTYAEAERCSVVRDFCGHGVGRLFHDSPNILHYGRANEGPELREGMIFTIEPMINLGRPHVKVLADGWTAVTRDRSLSAQYEHTVGVTADGCEIFTLSPAGLDRPGLPSLAR
>NZ_CP013552.1|WP_064821912.1|1943123_1943783_+|TetR/AcrR-family-transcriptional-regulator
MLNEAVNLNSSSEAGGEPERRVRDRGATERAILAAAKGLLAEEGFQNFGINAVARRAGCDKQLIYRYYGGLDGLVEAIGADLGTWVRDRIPEDAGGMFLLTYGDLMERLALLLLDALRNDPLMRRILAWEVSENTEQVRRLSEARSKALALWLDRMRGSLAPPKGVDAAAVNAVVIAAIQHLVLAGAAGGQCAGLSLKTSKDWEKAATALKRLVRGVYG
>NZ_CP013552.1|WP_004673842.1|1943913_1944087_+|hypothetical-protein
MGSKIARAVFLVTAIMFFAVLALDIAIPTLVLCTMALSTWVVSLDLPVMRKQRGEAA

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1583444 : 1592645

Enterobacteria_phage(28.57%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012483354.1\|1583444_1584743_+	serine hydroxymethyltransferase	A0A219Y950	Aeromonas_phage	5.4e-97	51.2
WP_003547190.1\|1584752_1585229_+	transcriptional repressor NrdR	NA	NA	NA	NA
WP_064821772.1\|1585232_1586600_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	A0A1V0SE20	Indivirus	8.9e-34	38.6
WP_064821773.1\|1586599_1587211_+	riboflavin synthase	A0A2I2L4R9	Orpheovirus	6.8e-18	35.4
WP_016734184.1\|1587262_1588132_-	glucose-1-phosphate thymidylyltransferase RfbA	A0A291LA53	Escherichia_phage	6.8e-96	59.7
WP_064821774.1\|1588141_1589029_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA
WP_064821775.1\|1589032_1590088_-	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	9.2e-95	51.2
WP_012483360.1\|1590094_1590673_-	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	8.1e-37	48.1
WP_064821776.1\|1590662_1592645_-	hypothetical protein	F2Y0P4	Organic_Lake_phycodnavirus	8.8e-06	36.4

DBSCAN-SWA_2

1911812 : 1924913

uncultured_Mediterranean_phage(90.91%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_064823114.1\|1911812_1912826_+	beta-N-acetylhexosaminidase	A0A1B1IVS3	uncultured_Mediterranean_phage	2.8e-24	42.6
WP_029531141.1\|1912844_1913702_+	segregation/condensation protein A	A0A1B1IVW1	uncultured_Mediterranean_phage	3.6e-33	36.7
WP_064821900.1\|1913698_1914403_+	SMC-Scp complex subunit ScpB	A0A1B1IVT7	uncultured_Mediterranean_phage	1.9e-40	48.2
WP_012483600.1\|1914590_1914782_+	twin-arginine translocase TatA/TatE family subunit	A0A1B1IVR9	uncultured_Mediterranean_phage	8.9e-09	70.5
WP_012483601.1\|1914833_1915460_+	twin-arginine translocase subunit TatB	NA	NA	NA	NA
WP_012483602.1\|1915456_1916284_+	twin-arginine translocase subunit TatC	A0A1B1IVR7	uncultured_Mediterranean_phage	1.2e-52	46.1
WP_064821901.1\|1916380_1917664_+\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	2.2e-98	45.8
WP_064821902.1\|1917668_1918442_+	5'/3'-nucleotidase SurE	A0A1B1ITZ2	uncultured_Mediterranean_phage	8.9e-23	29.8
WP_064821903.1\|1918438_1919092_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	4.4e-15	35.7
WP_064821904.1\|1919231_1920821_+	peptidoglycan DD-metalloendopeptidase family protein	I3PV24	Clostridium_phage	5.0e-12	30.0
WP_064821905.1\|1920907_1921780_-	ATP-binding protein	NA	NA	NA	NA
WP_004678848.1\|1921983_1922331_+	preprotein translocase subunit YajC	A0A1B1IVR5	uncultured_Mediterranean_phage	4.1e-12	39.1
WP_064821906.1\|1922375_1924913_+	protein translocase subunit SecDF	A0A1B1IVP7	uncultured_Mediterranean_phage	7.4e-58	49.8

DBSCAN-SWA_3

3873722 : 3883781

Mycobacterium_phage(28.57%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012485329.1\|3873722_3874433_+	7-cyano-7-deazaguanine synthase QueC	A0A2P1JXV3	Rhodococcus_phage	2.1e-50	48.7
WP_064822823.1\|3874432_3874789_+	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA
WP_064822824.1\|3874785_3875514_+	7-carboxy-7-deazaguanine synthase QueE	A0A1U9WRB6	Streptococcus_virus	3.4e-40	37.8
WP_064822825.1\|3875520_3876744_-	adenylate/guanylate cyclase domain-containing protein	M1HLN3	Pelagibacter_phage	2.9e-15	29.4
WP_064822826.1\|3876846_3877821_-	class 1b ribonucleoside-diphosphate reductase subunit beta	R4TBI6	Mycobacterium_phage	4.3e-139	74.8
WP_064822827.1\|3878016_3880221_-	class 1b ribonucleoside-diphosphate reductase subunit alpha	A8E2R1	Enterococcus_phage	1.5e-211	51.7
WP_012485335.1\|3880199_3880604_-	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA	NA	NA	NA
WP_010068756.1\|3880620_3880842_-	glutaredoxin-like protein NrdH	V5UN81	Mycobacterium_phage	1.8e-16	52.1
WP_064822828.1\|3881516_3883781_-	cadmium-translocating P-type ATPase	E4ZFI9	Streptococcus_phage	5.1e-127	41.2

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP013555

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CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP013552

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection