CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Prophage number
NZ_CP013512	Rhizobium sp. N1314 plasmid pRspN1314a, complete sequence	0 crisprs	NA	0
NZ_CP013516	Rhizobium sp. N1314 plasmid pRspN1314e, complete sequence	0 crisprs	csa3,DEDDh	0
NZ_CP013515	Rhizobium sp. N1314 plasmid pRspN1314d, complete sequence	0 crisprs	csa3	0
NZ_CP013513	Rhizobium sp. N1314 plasmid pRspN1314b, complete sequence	0 crisprs	NA	0
NZ_CP013514	Rhizobium sp. N1314 plasmid pRspN1314c, complete sequence	0 crisprs	NA	1
NZ_CP013511	Rhizobium sp. N1314 chromosome, complete genome	1 crisprs	WYL,csa3,cas3,DEDDh	4

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

238753 : 277305

Stx2-converting_phage(100.0%)

plate,transposase

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_008536038.1\|238753_239980_-\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA
WP_008536039.1\|239943_241830_-\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
WP_004680427.1\|241829_242333_-\|plate	type VI secretion system baseplate subunit TssE	NA	NA	NA	NA
WP_004680426.1\|242419_242953_-	type VI secretion system tube protein Hcp	NA	NA	NA	NA
WP_004680425.1\|243068_244556_-	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA
WP_016737476.1\|244558_245113_-	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA
WP_004680423.1\|245148_246141_-	type VI secretion system protein TssA	NA	NA	NA	NA
WP_064807228.1\|247839_250119_-	hypothetical protein	NA	NA	NA	NA
WP_016737477.1\|252675_254031_+\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA
WP_016737478.1\|254092_255259_+	FHA domain-containing protein	NA	NA	NA	NA
WP_008536065.1\|255258_256548_+	type VI secretion system protein TssL	NA	NA	NA	NA
WP_012489525.1\|256557_260163_+	type VI secretion system membrane subunit TssM	NA	NA	NA	NA
WP_012489526.1\|260459_262076_+	hypothetical protein	NA	NA	NA	NA
WP_170960111.1\|262246_262414_+	hypothetical protein	NA	NA	NA	NA
WP_009996985.1\|262778_264344_-\|transposase	IS66-like element ISRel19 family transposase	A0A0P0ZEB3	Stx2-converting_phage	2.5e-112	44.4
WP_009996986.1\|264416_264764_-	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZBY2	Stx2-converting_phage	4.6e-27	53.9
WP_009996987.1\|264760_265123_-	IS66 family insertion sequence hypothetical protein	NA	NA	NA	NA
WP_012489527.1\|266561_267572_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_008536079.1\|270590_271478_-	hypothetical protein	NA	NA	NA	NA
WP_082929719.1\|272548_275854_+	hypothetical protein	NA	NA	NA	NA
WP_011053406.1\|276138_277305_+\|transposase	IS110-like element ISRel9 family transposase	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP013511

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP013511_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP013511_1

1536230-1536329

Orphan

Consensus_repeat	Method
TCTCCCCGTAAAAACGGGGAGAGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP013511_1

>merge|NZ_CP013511|1|1536230-1536329|CRISPRCasFinder
TCTCCCCGTAAAAACGGGGAGAGGGACGTGCCATGCGAGAGGTTTGCGGGGGGCGAGAGGGGGCGGCATATGCCCTTCTCCCCGTAAAAACGGGGAGAAG

>NZ_CP013511|1|1|1536230-1536329|CRISPRCasFinder
TCTCCCCGTAAAAACGGGGAGAGG	GACGTGCCATGCGAGAGGTTTGCGGGGGGCGAGAGGGGGCGGCATATGCCCT
TCTCCCCGTAAAAACGGGGAGAAG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP013511.1\|WP_064801674.1\|1546874_1548020_-\|ribonuclease-D	unknown	unknown	gnl\|CDD\|223426
NZ_CP013511.1\|WP_064801645.1\|1526642_1528682_-\|excinuclease-ABC-subunit-UvrC	unknown	unknown	gnl\|CDD\|234792
NZ_CP013511.1\|WP_064801668.1\|1542479_1544000_+\|exopolyphosphatase	unknown	unknown	gnl\|CDD\|223326
NZ_CP013511.1\|WP_064801643.1\|1525642_1525897_-\|molybdopterin-converting-factor-subunit-1	unknown	unknown	gnl\|CDD\|273753
NZ_CP013511.1\|WP_011424811.1\|1525893_1526484_-\|CDP-diacylglycerol--glycerol-3-phosphate-3-phosphatidyltransferase	unknown	unknown	gnl\|CDD\|273139
NZ_CP013511.1\|WP_064801658.1\|1535015_1536185_+\|alpha-D-ribose-1-methylphosphonate-5-triphosphate-diphosphatase	unknown	unknown	gnl\|CDD\|131371
NZ_CP013511.1\|WP_064801665.1\|1539485_1540199_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|169652
NZ_CP013511.1\|WP_064801661.1\|1537050_1538124_-\|phosphoribosylformylglycinamidine-cyclo-ligase	unknown	unknown	gnl\|CDD\|235439
NZ_CP013511.1\|WP_064801650.1\|1530533_1531130_-\|glutathione-S-transferase	unknown	unknown	gnl\|CDD\|198314
NZ_CP013511.1\|WP_064801659.1\|1536382_1537054_-\|phosphoribosylglycinamide-formyltransferase	unknown	unknown	gnl\|CDD\|235544
NZ_CP013511.1\|WP_064801652.1\|1531190_1532060_-\|23S-rRNA-(adenine(2030)-N(6))-methyltransferase-RlmJ	unknown	unknown	gnl\|CDD\|225509
NZ_CP013511.1\|WP_064801654.1\|1532076_1534281_+\|molybdopterin-oxidoreductase-family-protein	unknown	unknown	gnl\|CDD\|239167
NZ_CP013511.1\|WP_064801656.1\|1534277_1534868_+\|NUDIX-domain-containing-protein	unknown	unknown	gnl\|CDD\|184971
NZ_CP013511.1\|WP_064801647.1\|1528678_1529446_-\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|236389
NZ_CP013511.1\|WP_064801672.1\|1545736_1546798_-\|adenylate/guanylate-cyclase-domain-containing-protein	unknown	unknown	gnl\|CDD\|143636
NZ_CP013511.1\|WP_064801663.1\|1538368_1539493_+\|AI-2E-family-transporter	unknown	unknown	gnl\|CDD\|223701
NZ_CP013511.1\|WP_064801648.1\|1529811_1530447_+\|porin-family-protein	unknown	unknown	gnl\|CDD\|226163
NZ_CP013511.1\|WP_064801667.1\|1540263_1542468_+\|RNA-degradosome-polyphosphate-kinase	unknown	unknown	gnl\|CDD\|235469
NZ_CP013511.1\|WP_064801676.1\|1548151_1549543_-\|multicopper-oxidase-family-protein	unknown	unknown	gnl\|CDD\|225043
NZ_CP013511.1\|WP_064801670.1\|1544271_1545630_-\|esterase-like-activity-of-phytase-family-protein	unknown	unknown	gnl\|CDD\|226675

Protein	Function_ID	Function_description	E-value
NZ_CP013511.1\|WP_064801674.1\|1546874_1548020_-\|ribonuclease-D	gnl\|CDD\|223426	COG0349, Rnd, Ribonuclease D [Translation, ribosomal structure and biogenesis].	3.41868e-155
NZ_CP013511.1\|WP_064801645.1\|1526642_1528682_-\|excinuclease-ABC-subunit-UvrC	gnl\|CDD\|234792	PRK00558, uvrC, excinuclease ABC subunit UvrC.	0
NZ_CP013511.1\|WP_064801668.1\|1542479_1544000_+\|exopolyphosphatase	gnl\|CDD\|223326	COG0248, GppA, Exopolyphosphatase [Nucleotide transport and metabolism / Inorganic ion transport and metabolism].	9.36957e-143
NZ_CP013511.1\|WP_064801643.1\|1525642_1525897_-\|molybdopterin-converting-factor-subunit-1	gnl\|CDD\|273753	TIGR01682, Molybdopterin_synthase_sulfur_carrier_subunit, molybdopterin converting factor, subunit 1, non-archaeal. This model describes MoaD. It excludes archaeal homologs, since many Archaea have two MoaD-like proteins, suggesting two different functions. pfam02597 describes both the thiamine biosynthesis protein ThiS and this protein, MoaD, a subunit (together with MoaE, pfam02391) of the molybdopterin converting factor. Both ThiS and MoaD are involved in sulfur transfer reactions. Distribution of this family appears limited to species that also have a member of pfam02391, but a number of Archaea have two different members, suggesting functionally distinct subtypes. The C-terminal Gly-Gly of this model is critical to function. [Biosynthesis of cofactors, prosthetic groups, and carriers, Molybdopterin].	3.48586e-22
NZ_CP013511.1\|WP_011424811.1\|1525893_1526484_-\|CDP-diacylglycerol--glycerol-3-phosphate-3-phosphatidyltransferase	gnl\|CDD\|273139	TIGR00560, pgsA, CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase. Alternate names: phosphatidylglycerophosphate synthase; glycerophosphate phosphatidyltransferase; PGP synthase. A number of related enzymes are quite similar in both sequence and catalytic activity, including Saccharamyces cerevisiae YDL142c, now known to be a cardiolipin synthase. There may be problems with incorrect transitive annotation of near homologs as authentic CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase. [Fatty acid and phospholipid metabolism, Biosynthesis].	1.18329e-40
NZ_CP013511.1\|WP_064801658.1\|1535015_1536185_+\|alpha-D-ribose-1-methylphosphonate-5-triphosphate-diphosphatase	gnl\|CDD\|131371	TIGR02318, phosphono_phnM, phosphonate metabolism protein PhnM. This family consists of proteins from in the PhnM family. PhnM is a a protein associated with phosphonate utilization in a number of bacterial species. In Pseudomonas stutzeri WM88, a protein that is part of a system for the oxidation of phosphites (another form of reduced phosphorous compound) scores between trusted and noise cutoffs. [Energy metabolism, Other].	7.45495e-167
NZ_CP013511.1\|WP_064801665.1\|1539485_1540199_+\|hypothetical-protein	gnl\|CDD\|169652	PRK09087, PRK09087, hypothetical protein; Validated.	2.43845e-133
NZ_CP013511.1\|WP_064801661.1\|1537050_1538124_-\|phosphoribosylformylglycinamidine-cyclo-ligase	gnl\|CDD\|235439	PRK05385, PRK05385, phosphoribosylaminoimidazole synthetase; Provisional.	0
NZ_CP013511.1\|WP_064801650.1\|1530533_1531130_-\|glutathione-S-transferase	gnl\|CDD\|198314	cd03205, GST_C_6, C-terminal, alpha helical domain of an unknown subfamily 6 of Glutathione S-transferases. Glutathione S-transferase (GST) C-terminal domain family, unknown subfamily 6; composed of uncharacterized bacterial proteins with similarity to GSTs, including Pseudomonas fluorescens GST with a known three-dimensional structure. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Though the three-dimensional structure of Pseudomonas fluorescens GST has been determined, there is no information on its functional characterization.	3.36664e-39
NZ_CP013511.1\|WP_064801659.1\|1536382_1537054_-\|phosphoribosylglycinamide-formyltransferase	gnl\|CDD\|235544	PRK05647, purN, phosphoribosylglycinamide formyltransferase; Reviewed.	4.27932e-118
NZ_CP013511.1\|WP_064801652.1\|1531190_1532060_-\|23S-rRNA-(adenine(2030)-N(6))-methyltransferase-RlmJ	gnl\|CDD\|225509	COG2961, ComJ, Protein involved in catabolism of external DNA [General function prediction only].	5.64776e-156
NZ_CP013511.1\|WP_064801654.1\|1532076_1534281_+\|molybdopterin-oxidoreductase-family-protein	gnl\|CDD\|239167	cd02766, MopB_3, The MopB_3 CD includes a group of related uncharacterized bacterial and archaeal molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site. These members belong to the molybdopterin_binding (MopB) superfamily of proteins.	0
NZ_CP013511.1\|WP_064801656.1\|1534277_1534868_+\|NUDIX-domain-containing-protein	gnl\|CDD\|184971	PRK15009, PRK15009, GDP-mannose pyrophosphatase NudK; Provisional.	1.89189e-55
NZ_CP013511.1\|WP_064801647.1\|1528678_1529446_-\|SDR-family-oxidoreductase	gnl\|CDD\|236389	PRK09134, PRK09134, SDR family oxidoreductase.	1.97778e-149
NZ_CP013511.1\|WP_064801672.1\|1545736_1546798_-\|adenylate/guanylate-cyclase-domain-containing-protein	gnl\|CDD\|143636	cd07302, CHD, cyclase homology domain. Catalytic domains of the mononucleotidyl cyclases (MNC's), also called cyclase homology domains (CHDs), are part of the class III nucleotidyl cyclases. This class includes eukaryotic and prokaryotic adenylate cyclases (AC's) and guanylate cyclases (GC's). They seem to share a common catalytic mechanism in their requirement for two magnesium ions to bind the polyphosphate moiety of the nucleotide.	2.62384e-38
NZ_CP013511.1\|WP_064801663.1\|1538368_1539493_+\|AI-2E-family-transporter	gnl\|CDD\|223701	COG0628, yhhT, Predicted permease, member of the PurR regulon [General function prediction only].	9.29782e-64
NZ_CP013511.1\|WP_064801648.1\|1529811_1530447_+\|porin-family-protein	gnl\|CDD\|226163	COG3637, COG3637, Opacity protein and related surface antigens [Cell envelope biogenesis, outer membrane].	9.41426e-31
NZ_CP013511.1\|WP_064801667.1\|1540263_1542468_+\|RNA-degradosome-polyphosphate-kinase	gnl\|CDD\|235469	PRK05443, PRK05443, polyphosphate kinase; Provisional.	0
NZ_CP013511.1\|WP_064801676.1\|1548151_1549543_-\|multicopper-oxidase-family-protein	gnl\|CDD\|225043	COG2132, SufI, Putative multicopper oxidases [Secondary metabolites biosynthesis, transport, and catabolism].	8.58114e-91
NZ_CP013511.1\|WP_064801670.1\|1544271_1545630_-\|esterase-like-activity-of-phytase-family-protein	gnl\|CDD\|226675	COG4222, COG4222, Uncharacterized protein conserved in bacteria [Function unknown].	1.22518e-128

>NZ_CP013511.1|WP_064801658.1|1535015_1536185_+|alpha-D-ribose-1-methylphosphonate-5-triphosphate-diphosphatase
MWLNNFTLVLPNEVVSEGSVRVEDGAIAEIRPEPVSGAAIDGGGRLLMPGFVDLHGDMIEREIAPRPNATMPIDFGIHELDKKLAAAGVTTAFAAVSFATESVYGHVRSLETTSAVIEGINRLRDDLLIDHRVHARYEITNVGAAPALERLLNADQIDMVSLTDHTPGQGQYNNLQSYILSISERRAISEEMAAEIVAKRIAMRSNPEIEAKLREIVALSLKHKLSLASHDDDSVEKVAEMHDLGVTISEFPVTAPAAEEARRRGLWTLMGAPNALRGQSMSGNLSALDAARAGLLSIIAADYHPAAFVPGIFKLADMVEGGLPSAVAMATGNAARSAGLLDRGEIAIGQRADLVVVEPGEINRIRATFRAGRFVYSDGTLHPLRALAA
>NZ_CP013511.1|WP_064801656.1|1534277_1534868_+|NUDIX-domain-containing-protein
MMQPKSRVKIVGEEILSNGWTRLSSYLLDYIDRKGATQRLKREVYHRTPAACILLYDPKRDLVVLVRQFRLAVHLNGDPAWMIEVPAGLLDDDHPEQAIRREAMEETGYHLREARFLFKSYPSPGAIAEVVHFFVSLIDTTDRVAEGGGLDEEHEDIEVLEIPLDEATRMIETGEIFDTKTIVLLQWAALNRHKIR
>NZ_CP013511.1|WP_064801654.1|1532076_1534281_+|molybdopterin-oxidoreductase-family-protein
MNSYHGEFFWLLAMQALAYTNAMNIATPIDAKSPKLDSKIGHTACPHDCPSTCALEVEVSEDGRIGRVRGAGDHSYTSGVICAKVARYAERLYHPDRLMHPLRRAGPKGAGQWQQISWDDALDEIAEAFIKAEARDGSEAVWPYFYAGTMGWVQRDSIDRLRHAKRYSGFFSSICTNPAWTGFTMATGVLRGPDPREMGRTDCVVIWGTNAVSTQVNVMTHAIKSRKERGAKIVVIDIYDNPTMKQADMALIVRPGTDAALACATMHIAFRDGYADRDYMARYADDPGGLEAHLKTKTPQWAAAITGLSVEEIEAFARLVGTTKKTFFRLGYGFTRQRNGAVAMHAAASVATVLGSWQYEGGGAFHSNSDIFRMNNAELTGRSMKDGDIRMLDQSQIGRVLTGDPVALRHRGPVTAMLIQNTNPANIAPEQRLVRRGFARDDLFVAVHEQFMTETAEIADIVLPATMFVEHDDIYRAGGQNHILLGPKLVEPPPTVRTNLFVIEELAKRLGVADRPGFGFTAREMIDRILRSSDLPDYDHFLEHKWFDRQAAFEDAHFLNGFAHPDGRFHFRPDWINQPAPNKPPAAIGALGPHAELPAFPDQVDVIEVADPEHPFRLATSPARNFLNSSFSETKTSRQKEGRPEVMINPVDAEANGIAHGDLVCIGNSRGDLRIHARITTEVKPGVLIAEGLWPNKAHVDGEGINVLTGADPIAPYGGAAVHDNKVWLRKDTV
>NZ_CP013511.1|WP_064801652.1|1531190_1532060_-|23S-rRNA-(adenine(2030)-N(6))-methyltransferase-RlmJ
MNYRHIYHAGNFADVLKHAVLARLIRYMQKKEGAFRVLDTHAGIGLYDLSSEEAQKTGEWQAGIGKLMEAELGPQVSELLEPYLSTIRELNPEGGIRFYPGSPKLARMLFRPQDRLSAMELHPEDYARLHRLFEGDHHARITELDGWLALGAHLPPKEKRGIVLVDPPFEEEDEYERLAEGLEKAYRRFPGGTYCLWYPLKKGAPIKEFHETLQALDIPKMLCAELTVRSDRGMTGLTGSGLVVVNPPFTLKDELHQMLPALKDHLAQDRFASHRAFWLRGENKTVKGD
>NZ_CP013511.1|WP_064801650.1|1530533_1531130_-|glutathione-S-transferase
MKLLCSPASPYSSKVRMAAHFLDIEIDAIRVDTNTGPAILVDNNPLGKIPTLLTDDGASIFDSVVIMHYFDRLTKGRLYPSKKSKRTDAEVLEALCDGICDCLLTIVYERRFREEEKVHQPWIDRQWKKVTAGLAHLGAKPPKLGKKLNGGHFALAATLDYLDLRFKDQWEADHAPLVDWLAQFEKKFPAHREFKASA
>NZ_CP013511.1|WP_064801648.1|1529811_1530447_+|porin-family-protein
MRVLIAGLMASTFAIAGFSVAQAADAVDQVPEAPVAQEAPVKPTGNWEGFYLGGAGTYNMGDFGSDRHTYGFGGQVFTGYNWQAGQIVYGVESDLGYSGDDVSSGGVKNKYGWNGSVRGRVGYDMNPFLLYGTAGLALGNVKVSDGTSDESKTNYGYTVGAGVEAFVTNNITTRLEYRYTDYQSKDYDLDSGSFSRGYDENSVKLGIGVKF
>NZ_CP013511.1|WP_064801647.1|1528678_1529446_-|SDR-family-oxidoreductase
MNHKRLRSALITGAAKRIGRAIAEDLAANGFSVAIHANSSLREAEELAAELRRKGQRAVALQADLTDIGEAGELVAKASEALGPLDLLVNNASVFQHDSARSFNADTWALHFDLHVRAPSILAAAFAQQVPAEAAGMIVNIIDQRVWALRPSFYSYTLSKSALWTATQTLAQALAPRIRVNAIGPGPSMPSERQALEDFQAQVSALILQRGPALEEFGQTIRFLYDTPSITGQMIALDGGQHLAWQTPDVAEITE
>NZ_CP013511.1|WP_064801645.1|1526642_1528682_-|excinuclease-ABC-subunit-UvrC
MNGRKLPDGGVLYDDTDESEDDIEVEGEVSAAPLAAAVDWNVGSLNETGLVGAELIAEFVKRLPNSPGVYRMFNAEGDVLYVGKARSLKKRVGNYAVGRVHSNRIAQMVRQTANMEFVTTRTETEALLLEANLIKRLRPRFNVLLRDDKSFPYILITGDHRAPAIFKHRGARARKGDYFGPFASAGAVGRTINSLQRAFLIRTCTDSVFETRTRPCLLYQIKRCSGPCTREVSDEGYAELVQEAKDFLSGKSQKVKSHMAEAMNQAAEDLDFERAAIYRDRLAALSHVQSHQGINPAGVEEADVFAIHHEGGVSCIQVFFFRTGQNWGNRAYFPKADPQLSSAEVLNAFLAQFYDDKPVPKQIMLSETVEELELLAAALSEKAGHKVSILVPQRGEKRDLVEHVVGNAREAHGRKLAETASQSRLLEGFKETFGLAYAPQRIEIYDNSHIMGTNAVGGMVVAGPEGFVKNQYRKFNIKSTDITPGDDFGMMKEVMTRRFSRLIKEEGIPDRTAQAAAADAADMPFPAWPDVILIDGGQGQMTAVRAILAELGITDSVTAIGVAKGVDRDAGRERFFPPGRESFTLPPRDPVLYFIQRMRDEAHRFAIGSHRARRKKEMVKNPLDEIGGIGPSRKRALLQHFGTAKAVSRAALSDLMAVEGISEAVAKQVYNHFHDDAAK
>NZ_CP013511.1|WP_011424811.1|1525893_1526484_-|CDP-diacylglycerol--glycerol-3-phosphate-3-phosphatidyltransferase
MASRAYSLPNLLTYGRILAVPLIVLCFFVEGRLSISNTARWVALWIFIIASITDFLDGYLARIWNQTSNIGRMLDPIADKLLVASILLLVAADQTIAGWSIWAAIIILCREILVSGLREYLAALKVSVPVTRIAKWKTTLQLVAIAFLLAGPAGDEIFPYTTQTGIALLWIAALLTIYTGYDYFRAGLKHIVDDEE
>NZ_CP013511.1|WP_064801643.1|1525642_1525897_-|molybdopterin-converting-factor-subunit-1
MTRLVYFAWVRERIGKGEEEIDLPSSVVTVADLLNHLKTLGEEYEAALQYPEVIRVALDMEHVEHDEPIGAPREIGIFPPMTGG
>NZ_CP013511.1|WP_064801659.1|1536382_1537054_-|phosphoribosylglycinamide-formyltransferase
MSTPRKRAVVFISGGGSNMMALVAAAKAADYPAEIVGVISDKADAGGLAKAATEGIATFAFPRKDYASKEAHEAAIFSALDELSPDILCLAGYMRLLTPTFIQRYEGRMLNIHPSLLPLFPGLHTHQRAIDAGMRIAGCTVHFVTEGMDEGPVIGQAAVPILSGDTAESLAARVLTVEHQIYPQALRLFAQGSVTMDGGKAVSAEASTAAPKAQLISLIGDRA
>NZ_CP013511.1|WP_064801661.1|1537050_1538124_-|phosphoribosylformylglycinamidine-cyclo-ligase
MSQSGKNGLTYSDAGVDIDAGNLLVEKIKPAVRSTRRPGADGEIGGFGGLFDLKAAGFTDPVLVAANDGVGTKLKIAIDADYHDTVGIDLVAMCVNDLVVQGAEPLFFLDYFATGKLDPDQGAAIVGGIAAGCREAGCALIGGETAEMPGMYSSGDYDLAGFAVGAAERGKLLPSGDIAEGDVILGLASSGVHSNGFSLVRKIVELSGLGWDAPAPFAEGKKLGEALLEPTRIYVKPLLKAIRETGALKALAHITGGGFPENIPRVLPKHLAAEIDLTAVKVPTVFSWLATTGGVQAKEMLRTFNCGIGMIVVVAEENVAAVSKALEAEGEKVIMLGRMIARAEGAAGTVYKGTLAI
>NZ_CP013511.1|WP_064801663.1|1538368_1539493_+|AI-2E-family-transporter
MPQHVSGNSLKRQIFFWLAVLVFFIAFLYVFSSILLPFIAGMAIAYFLDPVADRLERLGLSRMMATVGILIAFVIVFALALMILIPVLISQFNDFAERLPSYISQLQKFIAQSQHSLLPQWIRSQVGTIKDNFSGILSEGMGFLTGLFAQIWNSGKAIVDVISLLVVTPVVAFYILLDWDRMVAKVDQWIPRDYVNDVRQIASEIDQAIAGFIRGQGSLCLILGIYYAAGLSLVGLNFGLLIGLFAGMISFIPYVGSLVGLVLAVGVAIVQFWPDYPWIGLVLVVFFSGQFLEGNILQPKLVGSSVGLHPVWLMFALFAFGALFGFVGLLVAVPAAAAVGVLVRFALSRYLQSDLYFGGSPSARAQKTKSVPNE
>NZ_CP013511.1|WP_064801665.1|1539485_1540199_+|hypothetical-protein
MSDVKNADPKRKAGEQLPLAFSHDAASSRDDLLISERLAAAVSIVDAWPAWPSPVVVLAGPVGSGKSHLARIWQELSGAVSIHPELGSDAAVAAAAGPVLFEDADRLGFDDNALFHVINSVRENATSLLITSRLWPISWPVLLPDLRSRLKAATIVEIGEPDEALLSQVIVKLFADRQLYIDDKLVLYIVNRMERSLNAAQTIVERLDRLALSRGTKITRSLAAEVLNELGNSEPAD
>NZ_CP013511.1|WP_064801667.1|1540263_1542468_+|RNA-degradosome-polyphosphate-kinase
MDSAVAEHQELTPETNDNIPPLDELLTSPERFINREFSWLQFNRRVLEETLNTEHPLLERVRFLSISAANLDEFFMVRVAGLEGQVRQNIAIRSPDGKTPAEQLDSILQEIDHLQMEQQASLAVLQQYLAKEDILIVRPGALSDADRQWLAAEFEQAIFPVLTPLSIDPAHPFPFIPNLGFSIGLQLVSKNGREPMTALLRLPPALDRFVRLPDDANTIRYITLEDVANIFIHRLYPGYEVQGSGTFRVIRDSDIEVEEEAEDLVRFFETALKRRRRGKVIRIETDSEMPASLRQFVVQALSIPDNRVAVLPGLLALNTLSEITKAPRDDLRFQPYNARFPERVREHAGDCFAAIREKDMVVHHPYESFDVVVQFLLQAARDPDVLAIKQTLYRTSNDSPIVRALVDAAEAGKSVTALVELKARFDEEANIRWARDLERAGVQVVFGFIELKTHAKMSMIVRREEGKLRTYCHLGTGNYHPITAKIYTDLSYFTCNPVIAHDMANIFNFITGYGEPEEGMQLAVSPYTLRSRILRHIEEEIQHARNGAPAAIWMKMNSLVDPDIIDALYRASHAGVEIDLVVRGICCLRPQVPGLSEKIRVKSIVGRFLEHSRIFCFGNGHGLPSDKALVYIGSADMMPRNLDRRVETMVPLTNPTVHEQVLSQIMLGNVIDNQQSYEILPDGTSRRMEVRRGEEPFNAQQYFMTNPSLSGRGEALKSSAPKLIAGLLEGRNNK
>NZ_CP013511.1|WP_064801668.1|1542479_1544000_+|exopolyphosphatase
MVESEAQGRLPGIAPVSVVDIGSNSIRLVVYEGLSRSPTILFNEKVLCGLGKGIAVTGKMDEESVARALAALHRFKALSDQARAATMYVLATAAAREASNGPDFIHQAETILQRHVRVLSGEEEARFASLGIISGFFNPDGIAGDLGGGSLELIDIKGKEVGKGITLPLGGLRLSEYAGGSLPKARTFARKQVKTAKLLAKGEGRTFYAVGGTWRNIAKLHMEITNYPLHMMQGYEVSLEAMMLFLDQVATARDSKEPALQAVSKHRRSLLPFGAIAMKEVLSVMKPSVISFSAQGVREGYLYSLLSEAERRADPLLAAAGELAILRARSPEHARELAEWTGRMMPLFGVQETEEESRYRQAACLLADISWRAHPDYRGLQALNVIAHSSFVGISHPGRAFIALTNYYRFEGLHDDGATGPLAQIATPQFIDRAKLLGGMLRVVYLFSASMPGIVKNLTFRKSSNPDFDLEFVVPPEYRDFAGERLDGRLQQLSRLTNKRLAFRFE
>NZ_CP013511.1|WP_064801670.1|1544271_1545630_-|esterase-like-activity-of-phytase-family-protein
MKNLLFASVSLFMLIAGPVSADQQQFPAKLAGQAILPANTMVPAPADAPDFLKHSGKFTTPDRKRTEALGTVPGKDGARVTDLKLPFDGQPIQGFSGIKTMADGTFWTLSDNGFGSKANSSDSMLFLHQMKFDWTANKAEVVKNLFLSDPNKIAPFPIVLEGTDTRYLTGADFDIESIQPVADGFWLGDEFGPYILKVDTEGRLTDVIPTTLDGKPVLSPDNPLIQLPGNPAAKMPVFNLKRSGGFEGLAMSKDGSKLYGLLEGAIYKDDGTMETADGHTAIRVIEFDVAAKKWTGRSWLYPFEGKGVSIGDFNMLDDATALVIERDSGAGTSDKACADPKQPKPDCFEAPAVLKRVYKIEFNDANAGKAVRKIGYIDLLDIQDPDNKKKAGSKDGVYDMPFVTIENADRVDATHIIIGNDNNLPFSAGRSVDKADDNEFSLLEVGEFLNAK
>NZ_CP013511.1|WP_064801672.1|1545736_1546798_-|adenylate/guanylate-cyclase-domain-containing-protein
MREISPTQNWILIAIVLAASGVVYDLMFYSNQTPVIGAIFALFIGMPILAFERKVLFRTLYRRIQSLPTFVFIITELVIYEILMSIGFACAGLLLWSLGMLKPSSFLDLVIMPFEVFLYALAVCSALIFILRVRELLGREVFVSMLISRYRNPVKEERVFLFIDLVDSTAFAEKHGDLRAQQLLSSLFATFAEPVRRHKGMINDYVGDAAIITWPLARGVKDARCVRCIFDILADIEANAAGWRKNYGQVPKLRVALHGGDIITAEVGVDHHKISYFGDTVNTTARLETLCRSLNRQVLISAELARRMTFPDDISCEDLGIHAVKGRGQALGVMALSSRAVTVLNTPAVVLHG
>NZ_CP013511.1|WP_064801674.1|1546874_1548020_-|ribonuclease-D
MIETTADLAAACKELAKSDFITIDTEFLRETTFWPELCLIQMASPTLEVLVDPLAKGIDLAPFFELMADTKVLKVFHAARQDIEIIFNRGNLIPHPIFDTQVGAMVCGFGDSVSYDQLVSRIKNVHIDKSSRFTDWSRRPLSEKQLEYALADVTHLRDVYLSLKAELDREGRTSWLREEMDILEARETYDMHPDDAWQRLKMRLRKPQELAVLKYVAAWREREARARNVPRSRVLKDDAIYEVAQQQPKDSEALGRLRTIPKGWERSAAGTAVVEAVNAALALPKAEMPHVPRQAQAPEGAAAAVELLKVLLKLISEKHGVAPKVIANSEDLDKIAADGEKADVAALHGWRRDLFGEPALQLIQGQIGLRFAGRKVETVSL
>NZ_CP013511.1|WP_064801676.1|1548151_1549543_-|multicopper-oxidase-family-protein
MPLLTRRNLLKTSAVAGAYGAGIAVAGKFGLAEAAPEPQLLTAVKTEALLTEAGPTRDVMSWGHDGMPPVLRMTKGRPYAARLKNGLDEPTTIHWHGLRIDNRMDGVPFVTQPYIYTGDSFDYVFTPPDAGTFWYHPHCNTLTQMGHGMTGMLVVEDPADPEFDTEVLLNLRDWRLGGDGQFIAPFRPRDAAKSGTYGTVRTANWRQEPQYDAPAGGLVRLRIAITDVTRIFSLTMAGADATVIAIDGNPVPKRFPLDLLQIGPGQRLDLAVRMPDGEGAVATLEDIRGTAPKTIASLRAVGQSLKRNIGDLGPLAENPVPKADLSAAEQIPLILSATAENAAVESICGTLGYSFWAINKVPWPGDTPDPTAPLAELKLGRSYVFNLENTTPHAHPIHLHGMSFTVISSSTREVMPLVSDTYLVQPDEKVQLALVADNPGDWVLHCHIIEHQKTGMTSYIRVS

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1864584 : 1871847

uncultured_Mediterranean_phage(100.0%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_064802110.1\|1864584_1865598_+	beta-N-acetylhexosaminidase	A0A1B1IVS3	uncultured_Mediterranean_phage	5.6e-25	41.5
WP_064806099.1\|1865616_1866474_+	segregation/condensation protein A	A0A1B1IVW1	uncultured_Mediterranean_phage	3.6e-33	36.7
WP_064802112.1\|1866470_1867175_+	SMC-Scp complex subunit ScpB	A0A1B1IVT7	uncultured_Mediterranean_phage	2.5e-40	47.6
WP_011425113.1\|1867357_1867549_+	twin-arginine translocase TatA/TatE family subunit	A0A1B1IVR9	uncultured_Mediterranean_phage	6.8e-09	72.1
WP_064802113.1\|1867600_1868215_+	twin-arginine translocase subunit TatB	NA	NA	NA	NA
WP_064802115.1\|1868211_1869039_+	twin-arginine translocase subunit TatC	A0A1B1IVR7	uncultured_Mediterranean_phage	5.2e-53	46.1
WP_064802117.1\|1869135_1870419_+\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	1.1e-97	45.6
WP_004678859.1\|1870423_1871197_+	5'/3'-nucleotidase SurE	A0A1B1ITZ2	uncultured_Mediterranean_phage	1.8e-23	30.2
WP_064802119.1\|1871193_1871847_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	1.2e-15	35.7

DBSCAN-SWA_2

2162152 : 2173150

uncultured_Mediterranean_phage(83.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_064802578.1\|2162152_2165074_-	excinuclease ABC subunit UvrA	A0A1B1IVR3	uncultured_Mediterranean_phage	0.0e+00	62.2
WP_064802580.1\|2165356_2165869_+	single-stranded DNA-binding protein	R9TP78	Rhizobium_phage	3.8e-46	57.1
WP_064802581.1\|2166089_2166656_+	DUF2569 family protein	NA	NA	NA	NA
WP_064802583.1\|2166789_2167437_-	MarC family protein	NA	NA	NA	NA
WP_064802585.1\|2167674_2170464_+	DNA gyrase subunit A	A0A1B1IVS2	uncultured_Mediterranean_phage	3.9e-76	42.2
WP_003539654.1\|2170810_2170966_-	hypothetical protein	NA	NA	NA	NA
WP_064802587.1\|2171501_2171996_+	pantetheine-phosphate adenylyltransferase	A0A1B1IVQ3	uncultured_Mediterranean_phage	3.0e-24	37.2
WP_064802589.1\|2172039_2172612_+	peptidylprolyl isomerase	A0A1B1IVS0	uncultured_Mediterranean_phage	1.7e-42	54.7
WP_064802591.1\|2172640_2173150_+	peptidylprolyl isomerase	A0A1B1IVS0	uncultured_Mediterranean_phage	9.3e-45	58.8

DBSCAN-SWA_3

3112214 : 3171145

Bacillus_phage(25.0%)

transposase,tRNA,holin,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_064804073.1\|3112214_3112946_+\|tRNA	aminoacyl-tRNA hydrolase	NA	NA	NA	NA
WP_064804075.1\|3112942_3113404_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_064804078.1\|3113413_3113725_-\|protease	ATP-dependent Clp protease adapter ClpS	NA	NA	NA	NA
WP_064804079.1\|3114050_3115154_+	redox-regulated ATPase YchF	NA	NA	NA	NA
WP_064804081.1\|3115170_3116244_-	hypothetical protein	NA	NA	NA	NA
WP_064804083.1\|3116436_3116928_+	MaoC family dehydratase	NA	NA	NA	NA
WP_064804085.1\|3116924_3117392_+	MaoC family dehydratase	NA	NA	NA	NA
WP_020921912.1\|3117410_3117953_-	adenine phosphoribosyltransferase	A0A1V0SKE5	Klosneuvirus	2.3e-33	43.8
WP_064804087.1\|3118067_3118952_-	cytochrome c1	NA	NA	NA	NA
WP_064804088.1\|3118977_3120258_-	cytochrome b N-terminal domain-containing protein	NA	NA	NA	NA
WP_011426278.1\|3120272_3120851_-	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA
WP_064804090.1\|3121137_3122070_+	endonuclease/exonuclease/phosphatase family protein	NA	NA	NA	NA
WP_064804092.1\|3122025_3123939_-	ABC transporter ATP-binding protein	W8CYL7	Bacillus_phage	3.0e-27	24.2
WP_064804094.1\|3124100_3124331_+	hypothetical protein	NA	NA	NA	NA
WP_064804096.1\|3124419_3126276_-	ABC transporter ATP-binding protein	W8CYL7	Bacillus_phage	6.7e-32	30.6
WP_189636973.1\|3126377_3126518_-	hypothetical protein	NA	NA	NA	NA
WP_064804098.1\|3126654_3127116_+\|tRNA	tRNA (cytidine(34)-2'-O)-methyltransferase	NA	NA	NA	NA
WP_064804100.1\|3127312_3128959_+	Na/Pi cotransporter family protein	NA	NA	NA	NA
WP_064804101.1\|3128962_3129223_-	hypothetical protein	NA	NA	NA	NA
WP_064804103.1\|3129390_3130302_+	oxygen-dependent coproporphyrinogen oxidase	NA	NA	NA	NA
WP_064804105.1\|3130404_3130668_+	hypothetical protein	NA	NA	NA	NA
WP_064806262.1\|3130781_3130967_+	DUF1059 domain-containing protein	NA	NA	NA	NA
WP_064804107.1\|3131034_3132288_-\|tRNA	CCA tRNA nucleotidyltransferase	K4JS34	Caulobacter_phage	3.0e-44	36.1
WP_064804109.1\|3132284_3132935_-	CoA pyrophosphatase	NA	NA	NA	NA
WP_064804111.1\|3132931_3133555_-	DUF1285 domain-containing protein	NA	NA	NA	NA
WP_064804112.1\|3133713_3134724_+	MoxR family ATPase	NA	NA	NA	NA
WP_064804114.1\|3134737_3135658_+	DUF58 domain-containing protein	NA	NA	NA	NA
WP_064804116.1\|3135654_3138468_+	DUF4159 domain-containing protein	NA	NA	NA	NA
WP_064804117.1\|3138469_3140542_+	hypothetical protein	NA	NA	NA	NA
WP_064804119.1\|3140546_3140963_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_082240317.1\|3140963_3141467_-	N-acetyltransferase	NA	NA	NA	NA
WP_064804123.1\|3141743_3142754_+	glutathione S-transferase family protein	NA	NA	NA	NA
WP_064804125.1\|3142838_3143318_-	NUDIX domain-containing protein	NA	NA	NA	NA
WP_064804127.1\|3143388_3144297_+	metallophosphoesterase	NA	NA	NA	NA
WP_064804128.1\|3144455_3145016_+	hypothetical protein	NA	NA	NA	NA
WP_064804130.1\|3145201_3145711_+	RNA polymerase sigma factor	NA	NA	NA	NA
WP_064804132.1\|3145712_3146552_+	anti-sigma factor	NA	NA	NA	NA
WP_064804134.1\|3146651_3148370_-	2-isopropylmalate synthase	NA	NA	NA	NA
WP_064804136.1\|3148712_3149942_-	benzoate/H(+) symporter BenE family transporter	NA	NA	NA	NA
WP_011426306.1\|3150092_3150677_-\|protease	ATP-dependent Clp protease proteolytic subunit	A0A223W000	Agrobacterium_phage	3.3e-30	38.4
WP_064804138.1\|3150908_3151667_+	DUF2076 domain-containing protein	NA	NA	NA	NA
WP_064804140.1\|3151802_3152267_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	E7DN65	Pneumococcus_phage	1.1e-28	48.8
WP_064804142.1\|3152266_3153181_-	CDF family cation efflux transporter EmfA	NA	NA	NA	NA
WP_064804144.1\|3153377_3154058_-	hypothetical protein	NA	NA	NA	NA
WP_064804145.1\|3154070_3154310_-	hypothetical protein	NA	NA	NA	NA
WP_064800413.1\|3154722_3155673_+\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_064804147.1\|3155925_3158115_-	anthranilate synthase	NA	NA	NA	NA
WP_082929672.1\|3158765_3159812_+	extensin family protein	NA	NA	NA	NA
WP_064806264.1\|3159944_3161624_-	formate--tetrahydrofolate ligase	NA	NA	NA	NA
WP_064804153.1\|3163722_3164448_+	LuxR family transcriptional regulator	NA	NA	NA	NA
WP_064804155.1\|3164494_3164953_+	PAS domain-containing protein	NA	NA	NA	NA
WP_064804157.1\|3164964_3166095_-	DUF2333 family protein	NA	NA	NA	NA
WP_064804159.1\|3166233_3167307_-	hypothetical protein	NA	NA	NA	NA
WP_011426320.1\|3167380_3167983_-	thymidine kinase	G9I9I2	Pseudomonas_phage	6.5e-53	55.9
WP_011426321.1\|3168219_3169176_+\|holin	choline ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_011426322.1\|3169250_3170096_+\|holin	choline ABC transporter permease subunit	NA	NA	NA	NA
WP_064804161.1\|3170092_3171145_+\|holin	choline ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	4.3e-20	31.3

DBSCAN-SWA_4

3888771 : 3899079

Mycobacterium_phage(25.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_064805160.1\|3888771_3889482_+	7-cyano-7-deazaguanine synthase QueC	A0A2P1JXV3	Rhodococcus_phage	3.3e-48	47.3
WP_064805162.1\|3889481_3889838_+	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA
WP_064805166.1\|3889834_3890563_+	7-carboxy-7-deazaguanine synthase QueE	A0A1U9WRB6	Streptococcus_virus	2.4e-41	37.8
WP_064805167.1\|3890671_3891895_-	adenylate/guanylate cyclase domain-containing protein	M1HLN3	Pelagibacter_phage	2.9e-15	30.7
WP_064805169.1\|3891998_3892973_-	class 1b ribonucleoside-diphosphate reductase subunit beta	R4TBI6	Mycobacterium_phage	1.9e-139	75.1
WP_064805171.1\|3893152_3895321_-	class 1b ribonucleoside-diphosphate reductase subunit alpha	A8E2R1	Enterococcus_phage	2.2e-212	52.0
WP_064805173.1\|3895299_3895713_-	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	A0A142F1R4	Bacillus_phage	2.8e-15	42.9
WP_064805175.1\|3895726_3895948_-	glutaredoxin-like protein NrdH	V5UN81	Mycobacterium_phage	6.7e-16	50.7
WP_064806360.1\|3896844_3899079_-	cadmium-translocating P-type ATPase	E4ZFI9	Streptococcus_phage	8.1e-125	40.9

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP013514

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CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP013511

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection