CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Target MGE spacer number	Prophage number
NZ_CP013558	Rhizobium phaseoli strain N841 plasmid pRphaN841a, complete sequence	1 crisprs	NA	1	0
NZ_CP013560	Rhizobium phaseoli strain N841 plasmid pRphaN841c, complete sequence	0 crisprs	csa3,DEDDh	0	0
NZ_CP013559	Rhizobium phaseoli strain N841 plasmid pRphaN841b, complete sequence	0 crisprs	NA	0	0
NZ_CP013557	Rhizobium phaseoli strain N841 chromosome, complete genome	1 crisprs	WYL,cas3,csa3,DEDDh	0	4
NZ_CP013561	Rhizobium phaseoli strain N841 plasmid pRphaN841d, complete sequence	0 crisprs	NA	0	1
NZ_CP013562	Rhizobium phaseoli strain N841 plasmid pRphaN841e, complete sequence	0 crisprs	csa3	0	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP013557_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP013557_1

1898459-1898547

Orphan

Consensus_repeat	Method
GCCGCTCCGAAGAAGAAGGCTGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP013557_1

>merge|NZ_CP013557|1|1898459-1898547|CRISPRCasFinder
GCCGCTCCGAAGAAGAAGGCTGCCGCCAAGACCGAAGCCGCCGAGGCTGGCGAAGGCGAGGAAGCCGCCGCTCCGAAGAAGAAGGCTGC

>NZ_CP013557|1|1|1898459-1898547|CRISPRCasFinder
GCCGCTCCGAAGAAGAAGGCTGC	CGCCAAGACCGAAGCCGCCGAGGCTGGCGAAGGCGAGGAAGCC
GCCGCTCCGAAGAAGAAGGCTGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP013557.1\|WP_064830942.1\|1891951_1893382_-\|methylenetetrahydrofolate--tRNA-(uracil(54)--C(5))-methyltransferase-(FADH(2)-oxidizing)-TrmFO	unknown	unknown	gnl\|CDD\|235416
NZ_CP013557.1\|WP_016732905.1\|1899254_1901030_-\|radical-SAM-protein	unknown	unknown	gnl\|CDD\|214792
NZ_CP013557.1\|WP_016732904.1\|1896070_1896661_+\|GDYXXLXY-domain-containing-protein	unknown	unknown	gnl\|CDD\|379571
NZ_CP013557.1\|WP_064825185.1\|1901189_1901993_-\|endonuclease/exonuclease/phosphatase-family-protein	unknown	unknown	gnl\|CDD\|197306
NZ_CP013557.1\|WP_064830940.1\|1890546_1891404_+\|phytoene/squalene-synthase-family-protein	unknown	unknown	gnl\|CDD\|224478
NZ_CP013557.1\|WP_064830941.1\|1891474_1891942_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013557.1\|WP_064825186.1\|1902052_1903459_-\|Si-specific-NAD(P)(+)-transhydrogenase	unknown	unknown	gnl\|CDD\|235373
NZ_CP013557.1\|WP_064830939.1\|1890157_1890544_+\|Mth938-like-domain-containing-protein	unknown	unknown	gnl\|CDD\|226260
NZ_CP013557.1\|WP_064830946.1\|1905337_1905535_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013557.1\|WP_004678848.1\|1887220_1887568_+\|preprotein-translocase-subunit-YajC	unknown	unknown	gnl\|CDD\|224775
NZ_CP013557.1\|WP_064830948.1\|1906466_1906751_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013557.1\|WP_081278550.1\|1903512_1903683_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|178801
NZ_CP013557.1\|WP_004678838.1\|1893924_1894071_-\|DUF1127-domain-containing-protein	unknown	unknown	gnl\|CDD\|227744
NZ_CP013557.1\|WP_190306525.1\|1905919_1906300_-\|Lar-family-restriction-alleviation-protein	unknown	unknown	gnl\|CDD\|379576
NZ_CP013557.1\|WP_064830947.1\|1905617_1905917_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013557.1\|WP_064802139.1\|1893480_1893624_-\|DUF1127-domain-containing-protein	unknown	unknown	gnl\|CDD\|227744
NZ_CP013557.1\|WP_064830938.1\|1887612_1890153_+\|protein-translocase-subunit-SecDF	unknown	unknown	gnl\|CDD\|237805
NZ_CP013557.1\|WP_064830943.1\|1894970_1896074_+\|DUF2157-domain-containing-protein	unknown	unknown	gnl\|CDD\|227209
NZ_CP013557.1\|WP_064830945.1\|1903708_1904896_-\|alpha-hydroxy-acid-oxidizing-protein	unknown	unknown	gnl\|CDD\|376451
NZ_CP013557.1\|WP_064830944.1\|1898738_1899161_+\|nuclear-transport-factor-2-family-protein	unknown	unknown	gnl\|CDD\|226158

Protein	Function_ID	Function_description	E-value
NZ_CP013557.1\|WP_064830942.1\|1891951_1893382_-\|methylenetetrahydrofolate--tRNA-(uracil(54)--C(5))-methyltransferase-(FADH(2)-oxidizing)-TrmFO	gnl\|CDD\|235416	PRK05335, PRK05335, tRNA (uracil-5-)-methyltransferase Gid; Reviewed.	0
NZ_CP013557.1\|WP_016732905.1\|1899254_1901030_-\|radical-SAM-protein	gnl\|CDD\|214792	smart00729, Elp3, Elongator protein 3, MiaB family, Radical SAM. This superfamily contains MoaA, NifB, PqqE, coproporphyrinogen III oxidase, biotin synthase and MiaB families, and includes a representative in the eukaryotic elongator subunit, Elp-3. Some members of the family are methyltransferases.	2.21623e-21
NZ_CP013557.1\|WP_016732904.1\|1896070_1896661_+\|GDYXXLXY-domain-containing-protein	gnl\|CDD\|379571	pfam14345, GDYXXLXY, GDYXXLXY protein. This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 171 and 199 amino acids in length. It contains a conserved GDYXXLXY motif.	4.5708e-43
NZ_CP013557.1\|WP_064825185.1\|1901189_1901993_-\|endonuclease/exonuclease/phosphatase-family-protein	gnl\|CDD\|197306	cd08372, EEP, Exonuclease-Endonuclease-Phosphatase (EEP) domain superfamily. This large superfamily includes the catalytic domain (exonuclease/endonuclease/phosphatase or EEP domain) of a diverse set of proteins including the ExoIII family of apurinic/apyrimidinic (AP) endonucleases, inositol polyphosphate 5-phosphatases (INPP5), neutral sphingomyelinases (nSMases), deadenylases (such as the vertebrate circadian-clock regulated nocturnin), bacterial cytolethal distending toxin B (CdtB), deoxyribonuclease 1 (DNase1), the endonuclease domain of the non-LTR retrotransposon LINE-1, and related domains. These diverse enzymes share a common catalytic mechanism of cleaving phosphodiester bonds; their substrates range from nucleic acids to phospholipids and perhaps proteins.	5.07614e-13
NZ_CP013557.1\|WP_064830940.1\|1890546_1891404_+\|phytoene/squalene-synthase-family-protein	gnl\|CDD\|224478	COG1562, ERG9, Phytoene/squalene synthetase [Lipid metabolism].	1.55431e-59
NZ_CP013557.1\|WP_064830945.1\|1903708_1904896_-\|alpha-hydroxy-acid-oxidizing-protein	gnl\|CDD\|376451	pfam01070, FMN_dh, FMN-dependent dehydrogenase.	3.1739e-156
NZ_CP013557.1\|WP_064825186.1\|1902052_1903459_-\|Si-specific-NAD(P)(+)-transhydrogenase	gnl\|CDD\|235373	PRK05249, PRK05249, Si-specific NAD(P)(+) transhydrogenase.	0
NZ_CP013557.1\|WP_064830939.1\|1890157_1890544_+\|Mth938-like-domain-containing-protein	gnl\|CDD\|226260	COG3737, COG3737, Uncharacterized conserved protein [Function unknown].	6.48044e-59
NZ_CP013557.1\|WP_004678848.1\|1887220_1887568_+\|preprotein-translocase-subunit-YajC	gnl\|CDD\|224775	COG1862, YajC, Preprotein translocase subunit YajC [Intracellular trafficking and secretion].	4.2566e-32
NZ_CP013557.1\|WP_081278550.1\|1903512_1903683_-\|hypothetical-protein	gnl\|CDD\|178801	PRK00024, PRK00024, DNA repair protein RadC.	2.0231e-06
NZ_CP013557.1\|WP_004678838.1\|1893924_1894071_-\|DUF1127-domain-containing-protein	gnl\|CDD\|227744	COG5457, COG5457, Uncharacterized conserved small protein [Function unknown].	7.56647e-09
NZ_CP013557.1\|WP_190306525.1\|1905919_1906300_-\|Lar-family-restriction-alleviation-protein	gnl\|CDD\|379576	pfam14354, Lar_restr_allev, Restriction alleviation protein Lar. This family includes the restriction alleviation protein Lar encoded by the Rac prophage of Escherichia coli. This protein modulates the activity of the Escherichia coli restriction and modification system.	3.3023e-06
NZ_CP013557.1\|WP_064802139.1\|1893480_1893624_-\|DUF1127-domain-containing-protein	gnl\|CDD\|227744	COG5457, COG5457, Uncharacterized conserved small protein [Function unknown].	7.28841e-12
NZ_CP013557.1\|WP_064830938.1\|1887612_1890153_+\|protein-translocase-subunit-SecDF	gnl\|CDD\|237805	PRK14726, PRK14726, protein translocase subunit SecDF.	0
NZ_CP013557.1\|WP_064830943.1\|1894970_1896074_+\|DUF2157-domain-containing-protein	gnl\|CDD\|227209	COG4872, COG4872, Predicted membrane protein [Function unknown].	2.08041e-42
NZ_CP013557.1\|WP_064830944.1\|1898738_1899161_+\|nuclear-transport-factor-2-family-protein	gnl\|CDD\|226158	COG3631, COG3631, Ketosteroid isomerase-related protein [General function prediction only].	2.32177e-11

>NZ_CP013557.1|WP_016732904.1|1896070_1896661_+|GDYXXLXY-domain-containing-protein
MSSLMARLQSGKGYLLSAVIVAGLQTIILGMIIQSRASILGNGAEVLLKTAPVDPRDFLRGDYVVLNYDISSVPVQTVSGGIPAEPGERTLWVRLKKQADGFWTVTESSFQRLPPQPETVILRSQPFYSGGLAAGDSIRVEYGIERYYVPEGQGKPLEEARNDGNVAIAVRVSPDGSAQIRSLLVDGKPVYDEPLY
>NZ_CP013557.1|WP_064830943.1|1894970_1896074_+|DUF2157-domain-containing-protein
MYRGRLERDLSLWVGKGLLGEETAGALLAEYDSRPASFSLGRVLMALAAVLLAAAVLLVVASNWEAIPRLVRVGTILALIWAVHIAAALILARGAAAAAGGLLVIGAMSFGGAISLIGQMYHLSGDEQTVMYLWFAIATISAILFRSGAVVVVAGFLSWASFAVYLENHDTHWIGLDPWMAPVMAVIVIALVRYTGAARARHLAYLLLIGWLAWLYTLYEEIAVALAFSVGGMAGVVLTALPHPRIAPLVRSAGAAPAFYSFLVAAIGFLLLHIEIEQGWRLVVLGLATLAAAVLAIALHGRNNGAVRYLAYTIFAAEMLYLASVTVGSILGTSSLFLFSGLVVALVAWIVIRLERRFSANAREARA
>NZ_CP013557.1|WP_004678838.1|1893924_1894071_-|DUF1127-domain-containing-protein
MNITRSFNNWRKYRQTVTELGRMTNRELHDLGIDRSDIHRVAREASSR
>NZ_CP013557.1|WP_064802139.1|1893480_1893624_-|DUF1127-domain-containing-protein
MNPIRIAKSWISYRRTLNELGSLSNQTLSDIGVSRYDIRNIASRSFR
>NZ_CP013557.1|WP_064830942.1|1891951_1893382_-|methylenetetrahydrofolate--tRNA-(uracil(54)--C(5))-methyltransferase-(FADH(2)-oxidizing)-TrmFO
MNTISYAPIHVVGGGLAGSEAAWQIASSGVPVILHEMRGVRGTDAHKTDGLAELVCSNSFRSDDATSNAVGVIHAEMRMAGSLIMAAADRHQVPAGGALAVDRDGFSEAVTKAIHDHPLITVVREEITGLPPRDWDLAIVATGPLTAPSLASAIQAQTGEDSLAFFDAIAPIVYRDSIDMDICWYQSRYDKVGPGGTGKDYINCPMDEAQYNAFVDALIAGDTVGFKEWEGTPYFDGCLPIEVMAERGRETLRHGPMKPMGLTNAHNPTVKAYAVVQLRQDNALGTLYNMVGFQTKLKYGAQAEIFRMIPGLENAEFARLGGLHRNTYINSPTLLDPSLTLKSRPGLRFAGQITGCEGYVESASVGLMAGRFAAAERKGEAILLPPATTALGSLLGHITGGHIVTDEEPGKRSFQPMNINFGLFPELEPGSIVKPEGVKRFRGKDKTIMKRQLIARRALADCAAWLGQTPRFAESA
>NZ_CP013557.1|WP_064830941.1|1891474_1891942_+|hypothetical-protein
MGIIVWCVLFAIVIFFAFVATRMAAQNKQDGLHDTGLAIIEFGRAFPNEAIRQLQATENGQAIFVRLHDNKAGLMRNMARHFSCHLIEPGRVRVVSSETGRGLAIEFLDAPNHNGKFEFASPKEASEVALWLLGNYIAEPDKDLPAGHISAANKQ
>NZ_CP013557.1|WP_064830940.1|1890546_1891404_+|phytoene/squalene-synthase-family-protein
MAEENIATNQDICLAMLRDSDRDRYLACLLSPQDKRGALAALYAFNAELARIRDLVHEPLPGEVRMQYWRDLLEGSAHGSTAANPVAAALLTAIETHRLPRKTLVDMIEARTFDLYDDPMETRLSLEGYAGETASALIQLASLVLSPQDAARSADAAGHAGVAQAIAGLLLLMPLHRRRGQLYIPLQILSATGLDRDSFLAGEDRPRISAAIEAFAGLGREHLAKARGAGPIAPAVFPAFLPVTLAEPVLRKAQRRGALLFDRPLQPPQWRRQLAMALAASRRKI
>NZ_CP013557.1|WP_064830939.1|1890157_1890544_+|Mth938-like-domain-containing-protein
MAKGIEIRAAHFPGRAPIDTYGNGGFRFADMSHRGSILCLPSGIHGWDMDMSKPLSPENFRRVLDEAADIEVLLVGTGTELRRLPEELKRALKARGIASDPMSTGAAVRTFNIMLAEQRAVAAALIAV
>NZ_CP013557.1|WP_064830938.1|1887612_1890153_+|protein-translocase-subunit-SecDF
MLHFSRWKTLLIWLVAFAAVVIAAPNLLSEAQRASLPDWLRNDRVMLGLDLQGGSHIVLKVERSDIVKDRLEEAVANVRNALRGAGIRYTGLTGNDRTVSVRITDPAETQKAADRLKSLTTTGRDSAPELTLQQGGEGQLSLQISDAEITADVASARTRSLDIVGRRIAGFGYENFLVRPEGDDRITVQVLGSVDAERLKNLLNQPAKLSFHLIDESMSGQEALNGRWPATSEVLYSLDDPPVPYLVDRTAFASAGNMVDIQPVVDSQTQDTSIAYRLDAEGTKRLAEVTGQNIGKHLAIVFDDQVMSAPAIDAAITNGEGRISANFSEDGVRDLAVMLRAGALPATLTSVEERSVSPTFGGESIVSGFVAGLVAVVLVAALMIALYRILGVIAVVSLFFNLILIIAALSLAGATLTLPGIAGIVLIVGMAVDSNVLIYERIREEEKTAHSFAEAAGRGFSRAFATIVDANVTIFIAAVILFFLGSEAIRGFAVTLAVGILTTVFTAFTLTRSIVAVWLARRHPRHLPKSVLTHLFEHANIRFMGIRRYVFTASAAFSLIAMAAFATVGLQLGIDFNGGSLIEVTAKQGNADIADLRSRLNDLNLGEVGVERTGGPANARIRIASQGGGENAEQSAATLVRGELEADYDFRRVEVVGPAISGELTMMATLGIVAALAAILLYIWIRFEWQFAVGAIVATLHDVIIMLGLFVLTGIEFNLTSIAAVLTIVGYSLNDTVVVYDRMRENLKRYTKMPLPILIDASINQTLSRTVLTAATTLLALLALYLFGGDVMRSFAFAMLFGVALGTFSSIYIAAPVLIVFRLRPESPDGEESNKTDAGVKSGTVV
>NZ_CP013557.1|WP_004678848.1|1887220_1887568_+|preprotein-translocase-subunit-YajC
MFITPAFAQSATDTATGFGGSGFEMIILFVPLMVVWYFLLIRPQRAQAKKREETLKAIRRGDQVVTGGGLVGKVTKVVDDKEVEVEIAEGVRVRIVRSGISEVRVKGEPVKADAA
>NZ_CP013557.1|WP_064830944.1|1898738_1899161_+|nuclear-transport-factor-2-family-protein
MTEKHDMKKLVEEIYAVRGRGDIEGTLALIGDDCTFRMAGNTRLSPLSTEMGGQAFRQVIAQLITVWDLSKVNTTGIYVDEDEHIVFARREGEVRHIPSGVSFYTEYVDKIHFRDGKPVKIVEFVDTLQVAETSQIIQIA
>NZ_CP013557.1|WP_016732905.1|1899254_1901030_-|radical-SAM-protein
MSHALEAARRRFQLILIKPSHYDDDGYVIRWWRAMIPSNSLAALYGIAAECAERQVLGPDTAIDITVIDETNTRVDFARLLAQFKRHGNFGMVALVGVQSNQYPRALDIARPFRNAGLPVSMGGFHVSGCLSMLDGQAVGLDACRDMGISMFAGEAEGRLDMVLRDAASGELKPLYNFMNDLPGIGGTPVPFLPKDNIQRTLGLSTSFDAGRGCPYQCSFCTIINVQGRKSRFRSADDVEKLVRMNWAQGIHKFFITDDNFARNKDWEAIFDRLIELKERDGIPLGLMIQVDTLCHKIPNFIEKSRRAGVTRVFIGLENVNPDNLTAAKKNQNKITEYRKMLLAWKAQGIMTLAGYILGFPADTPESIRRDIAIIQEELPLDVIEFFILTPLPGSEDHQVLWKKGVEMDADLNIYDVEHVCTAHPKMSKQQWEDIYHEAWSLYYSPDHMKTLLRRAVATGVPLARLVKVLVSFATTVPLENVHPLQSGLLRLKTPSERRPELPRENPLFFWPRFAWETFSKHASLAGTIVGLTISAFLISRDAKSKAYMDQALTPVADDEEETLSLFTKTSGGTAAVSHVRKVAQLTRGAN
>NZ_CP013557.1|WP_064825185.1|1901189_1901993_-|endonuclease/exonuclease/phosphatase-family-protein
MRIISLNAWGGSLHEALIDYVRQADADVLCLQEVLRAPDSGSGWSIYRDSGLELPQRANLFAEIGAALPGHDGFFCPTSRGMLFDGDAAIAAEFGLATFVRKSHSVIAQAIDFVHGSFSAAGWGEHPRPRNAHCIRVFSHANASAITIAHMHGLRDPAGKGDTPAREEQALALAGLVERVWPGSEGLVVCGDFNVLPDSATFNILARMGLSDLVTGNGLVDTRTSYYLKQGRFADYMLVTPEVKVARFEVVATPEVSDHRALLLDIV
>NZ_CP013557.1|WP_064825186.1|1902052_1903459_-|Si-specific-NAD(P)(+)-transhydrogenase
MFQYDLVVVGSGPAGRRGAIQAAKLGKKVLVIEQGKRVGGVSVHTGTIPSKTLRETALNLSGWRERGFYGRSYRVKQEISAEDLRRRLLITLNHEVEVLEHQFARNRVHHMRGKASFVDASTLQVVKDDGEITQVSAASVLLAVGTKPFRPDYMPFDGKTVLDSDELLDIQELPRSMIVIGAGVIGIEYATIFSALDTAVTVIDPKATMLDFIDKEIVEDFTYQLRDRNMKLLLGQKADKVETLENGKVELTLDSGRRLTTDMVLFAAGRMGATDTLNLPAIGLEADSRGRLKVNPETFQTSVANVYAAGDVVGFPSLASTSMEQGRIAARVAIGAVAKEPQKYFPYGIYAVPEISTCGLTEEEMKERGIPYECGIARFRETSRGHIMGLDTGLLKLIFSLKTRRLLGVHIVGEGATELVHIGQAVLNLKGTVEYFVENTFNYPTLAEAYKIAGLDAWNRMGDIKSEL
>NZ_CP013557.1|WP_081278550.1|1903512_1903683_-|hypothetical-protein
MTKVIIDAAKALAIIFHDQIIIGKNGHVGLKGLTLIARRSGRIGVVKQSVTLTGYR
>NZ_CP013557.1|WP_064830945.1|1903708_1904896_-|alpha-hydroxy-acid-oxidizing-protein
MTIRSGNTDRSSRLCRDVLCLDDFEIKARRHLPKPLFGYIAGATETNASLRHNAEAFQAYAFRPRVLRDVSTRSTATSLFGKTHAVPFGIAPMGISALMAYRGDIVLAQGADQSGIPMIISGSSLIPLEEIAAASPQAWFQAYLPGEPDRIDALIDRVAAAGIDTLLLTVDTATLPNRENNVRAGFSTPLRPGLRLAWQGISHPRWTTGTFLRTIAQHGIPHFENSYATRGAPIISSNVTRDFGKRDHLNWSHLERIRKRWSGRLVVKGIMHPEDAARAADTGADGVIVSNHGGRQLDGTASPLQVLPEIATRVGDSIAVMVDGGIRRGTDIMKALALGACFVFVGRPFLYAAAVAGLPGVLRAADILKTELYSNMALLGVTRVGDISADYITRA
>NZ_CP013557.1|WP_064830946.1|1905337_1905535_-|hypothetical-protein
MTREEALEVLDVLLGVIIADNRKFDVPPPAYKRKRHITRVMKLYDKLMEEQHTHLRASAAAPDEK
>NZ_CP013557.1|WP_064830947.1|1905617_1905917_-|hypothetical-protein
MRDKTQINKRVQARYDFLMEEGKHGHYETMFKCVHEELALQHAQGFKAGQEAMRERAADYIDNYENELKDVLVSEKMEMKERYIRACSIRALPIEEPQS
>NZ_CP013557.1|WP_190306525.1|1905919_1906300_-|Lar-family-restriction-alleviation-protein
MGHKPCPFCGKTAAEERHHNDGVGTKEWMSCLGCGASGGLWGFRSVSEGWNARPAEAALAADVERLRGALQEVIGCFHASETEGITDRMAEQEDQSDGSLYGLVNRRLRPAYDAAVNALAQQKQEG
>NZ_CP013557.1|WP_064830948.1|1906466_1906751_-|hypothetical-protein
MRSQQLADLDFHNPKDISEKTFKVCTYQAKGSRVSIDDVLDKSFRTEAEAKAAVLAIKDFKGEELDVLEFDADSDEICVFCAEWDDDNKRYVEA

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Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1549485 : 1558686

Enterobacteria_phage(28.57%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012483354.1\|1549485_1550784_+	serine hydroxymethyltransferase	A0A219Y950	Aeromonas_phage	5.4e-97	51.2
WP_003547190.1\|1550793_1551270_+	transcriptional repressor NrdR	NA	NA	NA	NA
WP_064830840.1\|1551273_1552641_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	A0A1V0SE20	Indivirus	8.9e-34	38.6
WP_012483356.1\|1552640_1553252_+	riboflavin synthase	A0A2I2L4R9	Orpheovirus	2.0e-17	35.6
WP_064830841.1\|1553303_1554173_-	glucose-1-phosphate thymidylyltransferase RfbA	A0A291LA53	Escherichia_phage	5.2e-96	59.7
WP_064830842.1\|1554182_1555070_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA
WP_064821775.1\|1555073_1556129_-	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	9.2e-95	51.2
WP_012483360.1\|1556135_1556714_-	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	8.1e-37	48.1
WP_064830843.1\|1556703_1558686_-	glycosyltransferase family 1 protein	F2Y0P4	Organic_Lake_phycodnavirus	8.8e-06	36.4

DBSCAN-SWA_2

1877049 : 1890153

uncultured_Mediterranean_phage(90.91%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_064831723.1\|1877049_1878063_+	beta-N-acetylhexosaminidase	A0A1B1IVS3	uncultured_Mediterranean_phage	4.8e-24	42.6
WP_064831724.1\|1878081_1878939_+	segregation/condensation protein A	A0A1B1IVW1	uncultured_Mediterranean_phage	8.1e-33	36.3
WP_064830934.1\|1878935_1879640_+	SMC-Scp complex subunit ScpB	A0A1B1IVT7	uncultured_Mediterranean_phage	1.9e-40	48.2
WP_012483600.1\|1879827_1880019_+	twin-arginine translocase TatA/TatE family subunit	A0A1B1IVR9	uncultured_Mediterranean_phage	8.9e-09	70.5
WP_012483601.1\|1880070_1880697_+	twin-arginine translocase subunit TatB	NA	NA	NA	NA
WP_012483602.1\|1880693_1881521_+	twin-arginine translocase subunit TatC	A0A1B1IVR7	uncultured_Mediterranean_phage	1.2e-52	46.1
WP_064830935.1\|1881617_1882901_+\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	7.5e-99	45.8
WP_004678859.1\|1882905_1883679_+	5'/3'-nucleotidase SurE	A0A1B1ITZ2	uncultured_Mediterranean_phage	1.8e-23	30.2
WP_010025231.1\|1883675_1884329_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	5.2e-16	35.7
WP_064830936.1\|1884468_1886058_+	peptidoglycan DD-metalloendopeptidase family protein	I3PV24	Clostridium_phage	5.0e-12	30.0
WP_064830937.1\|1886144_1887017_-	ATP-binding protein	NA	NA	NA	NA
WP_004678848.1\|1887220_1887568_+	preprotein translocase subunit YajC	A0A1B1IVR5	uncultured_Mediterranean_phage	4.1e-12	39.1
WP_064830938.1\|1887612_1890153_+	protein translocase subunit SecDF	A0A1B1IVP7	uncultured_Mediterranean_phage	5.7e-58	50.2

DBSCAN-SWA_3

2175643 : 2185906

uncultured_Mediterranean_phage(83.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_064831090.1\|2175643_2178565_-	excinuclease ABC subunit UvrA	A0A1B1IVR3	uncultured_Mediterranean_phage	0.0e+00	62.2
WP_004671899.1\|2178847_2179363_+	single-stranded DNA-binding protein	R9TP78	Rhizobium_phage	1.2e-44	72.9
WP_004671901.1\|2179464_2180112_-	MarC family protein	NA	NA	NA	NA
WP_029531195.1\|2180349_2183172_+	DNA gyrase subunit A	A0A1B1IVS2	uncultured_Mediterranean_phage	8.8e-76	42.6
WP_003539654.1\|2183573_2183729_-	hypothetical protein	NA	NA	NA	NA
WP_064825256.1\|2183871_2184150_-	hypothetical protein	NA	NA	NA	NA
WP_064825257.1\|2184240_2184735_+	pantetheine-phosphate adenylyltransferase	A0A1B1IVQ3	uncultured_Mediterranean_phage	3.6e-25	37.8
WP_012483798.1\|2184793_2185366_+	peptidylprolyl isomerase	A0A1B1IVS0	uncultured_Mediterranean_phage	5.7e-43	53.2
WP_004671916.1\|2185396_2185906_+	peptidylprolyl isomerase	A0A1B1IVS0	uncultured_Mediterranean_phage	1.2e-44	58.8

DBSCAN-SWA_4

3912677 : 3922736

Mycobacterium_phage(28.57%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_064831553.1\|3912677_3913388_+	7-cyano-7-deazaguanine synthase QueC	A0A2P1JXV3	Rhodococcus_phage	2.7e-50	48.7
WP_064822823.1\|3913387_3913744_+	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA
WP_064822824.1\|3913740_3914469_+	7-carboxy-7-deazaguanine synthase QueE	A0A1U9WRB6	Streptococcus_virus	3.4e-40	37.8
WP_064822825.1\|3914475_3915699_-	adenylate/guanylate cyclase domain-containing protein	M1HLN3	Pelagibacter_phage	2.9e-15	29.4
WP_064831554.1\|3915801_3916776_-	class 1b ribonucleoside-diphosphate reductase subunit beta	R4TBI6	Mycobacterium_phage	2.5e-139	75.1
WP_064822827.1\|3916971_3919176_-	class 1b ribonucleoside-diphosphate reductase subunit alpha	A8E2R1	Enterococcus_phage	1.5e-211	51.7
WP_012485335.1\|3919154_3919559_-	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA	NA	NA	NA
WP_010068756.1\|3919575_3919797_-	glutaredoxin-like protein NrdH	V5UN81	Mycobacterium_phage	1.8e-16	52.1
WP_064831555.1\|3920471_3922736_-	cadmium-translocating P-type ATPase	E4ZFI9	Streptococcus_phage	5.1e-127	41.2

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP013561

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

238753 : 277302

Stx2-converting_phage(100.0%)

plate,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_008536038.1\|238753_239980_-\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA
WP_008536039.1\|239943_241830_-\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
WP_004680427.1\|241829_242333_-\|plate	type VI secretion system baseplate subunit TssE	NA	NA	NA	NA
WP_004680426.1\|242419_242953_-	type VI secretion system tube protein Hcp	NA	NA	NA	NA
WP_004680425.1\|243068_244556_-	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA
WP_016737476.1\|244558_245113_-	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA
WP_004680423.1\|245148_246141_-	type VI secretion system protein TssA	NA	NA	NA	NA
WP_064812016.1\|247839_250119_-	hypothetical protein	NA	NA	NA	NA
WP_016737477.1\|252675_254031_+\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA
WP_016737478.1\|254092_255259_+	FHA domain-containing protein	NA	NA	NA	NA
WP_008536065.1\|255258_256548_+	type VI secretion system protein TssL	NA	NA	NA	NA
WP_012489525.1\|256557_260163_+	type VI secretion system membrane subunit TssM	NA	NA	NA	NA
WP_012489526.1\|260459_262076_+	hypothetical protein	NA	NA	NA	NA
WP_170960111.1\|262246_262414_+	hypothetical protein	NA	NA	NA	NA
WP_009996985.1\|262778_264344_-\|transposase	IS66-like element ISRel19 family transposase	A0A0P0ZEB3	Stx2-converting_phage	2.5e-112	44.4
WP_009996986.1\|264416_264764_-	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZBY2	Stx2-converting_phage	4.6e-27	53.9
WP_009996987.1\|264760_265123_-	IS66 family insertion sequence hypothetical protein	NA	NA	NA	NA
WP_012489527.1\|266561_267572_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_008536079.1\|270590_271478_-	hypothetical protein	NA	NA	NA	NA
WP_081278607.1\|272548_275851_+	hypothetical protein	NA	NA	NA	NA
WP_011053406.1\|276135_277302_+\|transposase	IS110-like element ISRel9 family transposase	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

3. NZ_CP013558

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP013558_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP013558_1

37717-37817

Orphan

Consensus_repeat	Method
GCCCCGACCTTCCGCAAGGGTCC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP013558_1

>merge|NZ_CP013558|1|37717-37817|CRISPRCasFinder
GCCCCGACCTTCCGCAAGGGTCCCGATTTCTCGGCTGCCCCCAAGCAGGTCGACGGCCAGACGGAAGCCAAAAGCGACGCCCCGACCTTCCGTAAGGGTCC

>NZ_CP013558|1|1|37717-37817|CRISPRCasFinder
GCCCCGACCTTCCGCAAGGGTCC	CGATTTCTCGGCTGCCCCCAAGCAGGTCGACGGCCAGACGGAAGCCAAAAGCGAC
GCCCCGACCTTCCGTAAGGGTCC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP013558.1\|WP_064831818.1\|43962_44778_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|181295
NZ_CP013558.1\|WP_064831802.1\|26717_27812_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013558.1\|WP_064831803.1\|27918_28545_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013558.1\|WP_150129052.1\|41579_41945_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013558.1\|WP_064831816.1\|41954_42152_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013558.1\|WP_150129051.1\|38478_38727_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|227505
NZ_CP013558.1\|WP_150129050.1\|29710_30256_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013558.1\|WP_064831804.1\|28646_29072_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013558.1\|WP_064831808.1\|31645_34126_+\|type-IV-secretion-system-DNA-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|313610
NZ_CP013558.1\|WP_064831807.1\|30846_31641_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013558.1\|WP_064831810.1\|35492_36536_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013558.1\|WP_190306544.1\|34391_34562_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013558.1\|WP_064831817.1\|43450_43966_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013558.1\|WP_064831813.1\|40457_41042_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013558.1\|WP_064831814.1\|41038_41242_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013558.1\|WP_064831812.1\|38730_40125_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|237030
NZ_CP013558.1\|WP_081278590.1\|43049_43451_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|238045
NZ_CP013558.1\|WP_064831881.1\|42162_43023_+\|metallophosphoesterase	unknown	unknown	gnl\|CDD\|277349
NZ_CP013558.1\|WP_150129049.1\|29217_29511_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013558.1\|WP_064831809.1\|34659_35355_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP013558.1\|WP_064831818.1\|43962_44778_+\|hypothetical-protein	gnl\|CDD\|181295	PRK08213, PRK08213, gluconate 5-dehydrogenase; Provisional.	0.00478286
NZ_CP013558.1\|WP_064831881.1\|42162_43023_+\|metallophosphoesterase	gnl\|CDD\|277349	cd07404, MPP_MS158, Microscilla MS158 and related proteins, metallophosphatase domain. MS158 is an uncharacterized Microscilla protein with a metallophosphatase domain. Microscilla proteins MS152, and MS153 are also included in this family. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.	1.44729e-42
NZ_CP013558.1\|WP_064831812.1\|38730_40125_+\|hypothetical-protein	gnl\|CDD\|237030	PRK12270, kgd, multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit.	0.000143021
NZ_CP013558.1\|WP_081278590.1\|43049_43451_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	3.83419e-05
NZ_CP013558.1\|WP_150129051.1\|38478_38727_+\|hypothetical-protein	gnl\|CDD\|227505	COG5178, PRP8, U5 snRNP spliceosome subunit [RNA processing and modification].	0.00652455
NZ_CP013558.1\|WP_064831808.1\|31645_34126_+\|type-IV-secretion-system-DNA-binding-domain-containing-protein	gnl\|CDD\|313610	pfam10412, TrwB_AAD_bind, Type IV secretion-system coupling protein DNA-binding domain. The plasmid conjugative coupling protein TrwB forms hexamers from six structurally very similar protomers. This hexamer contains a central channel running from the cytosolic pole (made up by the AADs) to the membrane pole ending at the transmembrane pore shaped by 12 transmembrane helices, rendering an overall mushroom-like structure. The TrwB_AAD (all-alpha domain) domain appears to be the DNA-binding domain of the structure. TrwB, a basic integral inner-membrane nucleoside-triphosphate-binding protein, is the structural prototype for the type IV secretion system coupling proteins, a family of proteins essential for macromolecular transport between cells and export.	3.32708e-07

>NZ_CP013558.1|WP_064831810.1|35492_36536_+|hypothetical-protein
MADETQNPTDKTFNGKHFADVMAQWPSGEGTLAFIAETVLRGDGAEFDHFGTVHKVEGDQLVATFHDGNIRRTGAAEFLTALEQNYPAQLAAAKSEIEREQFAAQALELRTEIVAGLREQGEGSQHQVEGGVYSIEGRALVLRDEQGDVSSRWLASNVKWELTAEQANAPEVEMSDLLADDIFPDLADEVKTPTEQTRSLPVSNAVLDEVFEKHADPHMRSVHGLDAATPALSSEQVAQLVVQPSEDDRRTQADESFKHGFPSNFMAAEIDEFTANVEAARAYWAENPHPLHQTPSMETPSEDQVDYGPAVENVRRLRFAAMADRAEAAARDDKGGRTLETTNEQGA
>NZ_CP013558.1|WP_064831809.1|34659_35355_+|hypothetical-protein
MKFGGSSGGGSFDNDDERNKKSARVKGGAYTPSYIPNSGNAYVGGQSREADSQQAYVRDAGSTMPRQSSREQARTDAVIEEAKAIKAKEAAEGKIQPGQQADQKQEKKANIHDTPQAMARQEHLASRLRGRLDALEAGGLQQFGERKPITSEKNFEAARSSYQATKEGIKQGKFAEMADRAQRAAGDHQQGQSTEMSKGGFAGMADRASAAAKPTPQTGTGIKKDTGMEQG
>NZ_CP013558.1|WP_190306544.1|34391_34562_+|hypothetical-protein
MRLIAFAIIGIPIFATFLASQRADRNLQDCWAKRGVNFACHGDGKYDPDRSLRRPE
>NZ_CP013558.1|WP_064831808.1|31645_34126_+|type-IV-secretion-system-DNA-binding-domain-containing-protein
MQILVAIVLFFIFYPFMLAYKTAKRILNVVVWFVARLLRLDKLVTKLSAWLIRRSDHFFARSRNPLLRGDLLAHAEEEYPRDIFPTAWEDIPDDVRHELVWDGRLLNGRRVAELAKAKITDEVVGNALARSGVHALALTFLITSVPLYLMAMDGGRGLGGIFGSHTPFPDWAWDNGAILPVMAWCLLTVLERLAFIFNIAIVSGLGLIAFPLFWFFAFAAAMNSAWQSASANYRVATRDSEVFFKSNFLSRQNQYKAYCREVENACHRLKDQPIIPVGEATGLIRGRGDMEAPDRGTIVSYDGESIRQHTLILGGTGSGKTRLVIRPLFRRIMEANWGASHKIGAYVTDGKGTLWRDLKPVVSERKDIAILGTHPDHSGLDLCQGMTPLEISTTFKAVSGQIQGASKDDFWPESASLLLMHSAALARALEMSGAARKKWRETRRCLPYSLVGIAQIASNELLMKECFKDFADFARALDDENTDDETTAIMTAADRSIEWLQGAHIKLGDITKGSIVANVSSVLGKLSGAPDITARFCSGALEKEKMVDVDHALKGGILFVAIGETEHGMAGKVVNCWLKTRLYILAKRRLLTDPEGCRNTSCALVADEFQMLATVGPDTDTTFWNIARETGVFMVAATQSVAALNQAIGENPTANLMNLLRSKIILKTEERSTLDYAKALAGEVARGWEYETDFYATQAIRKTEIGNGGVPLISVGGFHGLYPIYFTASTEQAAPYSASHLAAMWQRASNPVGNGTVDTGDGGASQNAQSMAAREEDQNRSTYTGSLNMRPKIDTDELLVGSGMAFAIIQRAGGDRMDVIDLEIAA
>NZ_CP013558.1|WP_064831807.1|30846_31641_+|hypothetical-protein
MTEHQRTVIAVSEVPAIDATPGDQGQPGAAPVEYPNGINPRWDVAQIATRGHVLVGRLEYIFEKTKFPAIWLWLLLILLTWAMLNGKINGFGPRLMHFDGTDSISRMLTYDPDTYFDIGGGVHAGPDLAWLGRYPPTPESLSVPDHEALITAVVADSAKAGTTVDEWTAVPELKTQPTITRPAKAFANNSAELRNGVVSVPEDGGRDIVVAAYVEGRWAFTIIRGDSCASLVGPAVKQCSDRTRDDGSWSGMAVSTISTLKPKE
>NZ_CP013558.1|WP_150129050.1|29710_30256_-|hypothetical-protein
MIFAIGYGGSKIYGSIRERQAEAERKRQDEILARETARATELARIADEKREQIKNADRDTLAKLVNSCRDQINTLFSKSVFGINFPYYSPDDLRKFADMGAAFKMPLGGWPSVALDNYDFDIVAWNLARITDKDYPITSISFVVEGAQDGFSVRHYAAVFSCDLDGLEAEKPDRTEIHYLD
>NZ_CP013558.1|WP_150129049.1|29217_29511_-|hypothetical-protein
MDTHAVIESLPVIGDQRAALIEIANRVFEKVIDRIEPENESLTRELWDPGDYIDNFFQDKELPMTLDYADYLIDALLVHHVVDLAVQADRQAEQSAN
>NZ_CP013558.1|WP_064831804.1|28646_29072_-|hypothetical-protein
MDVKSSQVTGNAASHYAAWQLSRRGWNVMLTSRNAKGSDLFCANDAETIFFGVQSKGLTKRDPVGLGANLVHLRSDWWIITIKAKTDAPTCFILKLQEVKDLAHHSNPLNSRTGAASIWLQPSAYDQPQFREAWHRFETLT
>NZ_CP013558.1|WP_064831803.1|27918_28545_-|hypothetical-protein
MWLFGKTKVQEAPPTELKRHAVSQPPIVALSHTEIKRQAVREAISALGLIKPSAEDTMVGFLGDEMEIDPRQTLTAYRKGGEQLSKDEKRALGLRSNAFLSRRAHEDLTEAGREVPLKAHETVLLRATFTLNRYRTLQSIKASDIVADKAFKGISYDVLNASCPVCGPLSGKTIQIEDASIFPLKGCTCATANFGYRADIDFLTAWND
>NZ_CP013558.1|WP_064831802.1|26717_27812_-|hypothetical-protein
MSNSSANYVQVPETAKINKPIFDTCPGDEVTEEVKAFIEAGNDPWHWRGHSHTPPPKYGTPPNYVGRFYLQKAQVESKNWAPCPCCSPDHRKFGRDGGLIAYFPDERVIRLIGPDCFGSLNHEGHENAIADLKRREREKSELEYILRCVGKIDQWRSAIDEMMKIAKQADSFFPGIQNRIEVSLQVKLWRNIRDGMLRVTEKLKTVKVGADGQQEEVTERIDTVLFQLDGYKALNPERKALAPILDKLAADLRKIGHVSESSVELMPPVDRTALSKELKRILTSTQSVHDALAHELRFLSQVNVNRFRQWAADERSPVDFEFERKEGTISIRGHKVFNGMPIPEELRTSYLPSIDAPVMNAKRQ
>NZ_CP013558.1|WP_150129051.1|38478_38727_+|hypothetical-protein
MSDKPMMSGGEVTMRGGRAMVTVESGGGGLTEVEGQPPPPPRPPEPDQPVPPVIKTFSEMAIRALTAANTSSSSSRSAEQGA
>NZ_CP013558.1|WP_064831812.1|38730_40125_+|hypothetical-protein
MKKTITATIAALFLTTSLVGPAAAGNDLLRLGIGVGAALIGEAMKGGGNHRSGGREPGKGDTLLGPVGGKQQPTRQASGKSKPAKADDKAQWASYVPTTPPIPAAKPTDEEMVAWAAAAPEREAQEQQADAEMAEAPVVATDATTTAAVTARPSPAADVAAVPSAAPIEEATEEARDAEGHYWGKITPSQMEKARKLGNLGIPMSEAYRAVGLKGPIADPAAPTGRDLVDENGRLWGNVPEGVAEKVQKAIDLGMKPSDAIRVIAGLQDPDAAAAEAKAVADKTLAKCIKNELDWHHFKFGQMLGGPVKYTECRPFEAQIAEAVAKDAAETNAAEQAAVSACVEDYVNTGTYDCPFHEKEFRAAVAYLDADPSRRKALEQSMAAKETAKRDAEAQDQLNEVFANQPAPAAENKPAFSAPSAENQTAAAPSIDEGKTAAIDEAKPEAAKPVEQQPPAKKKMKLDL
>NZ_CP013558.1|WP_064831813.1|40457_41042_+|hypothetical-protein
MTTTKGFPFIKYDPLARFVTEDRPRELVRAKFLASGEFQTLLEEGGHSVEVIAAQGTSIQRTSTACWLTASTSTWTRSRRPSQLCDISTTHPTKEPIMSQKSNQAAAGLLLIGLVAAAFHVVGSNPLVTGVLGMAQANREWQAEGAKVAHERNYTVICPRYRDAGFATRWASPWMWENSWCADYLDRLPPKEQS
>NZ_CP013558.1|WP_064831814.1|41038_41242_+|hypothetical-protein
MTDDKARKEAIRQHFLARHEARKAAMFAEWQDNIREVIEASPIETRMTIEDGIAFLRAGGERKSRAH
>NZ_CP013558.1|WP_150129052.1|41579_41945_+|hypothetical-protein
MVHADPHAFENQKAINPGWMDGHVGRAHKAILFQTFDNKDGNYFVSVSKDYDGRYIEYSEADMTLFGYVLRDAGFRRYDCDGENGPQWFIPGVITDAMKTTIGEELEPFDFLAITWEDVTR
>NZ_CP013558.1|WP_064831816.1|41954_42152_+|hypothetical-protein
MRYFDALEATVTAAEAIDECQRHDIKACVRESDGALIEEDTGDVIAMPIDEGDYSGEDVIGFLGY
>NZ_CP013558.1|WP_064831881.1|42162_43023_+|metallophosphoesterase
MKAAVFSDLHLSYNGQLHYPFDLPDDVEIAIVAGDVSAPVSISLQWLHNVVSGRGRRDVVFVAGNHEHYGQVYEKSMSQGMEDRAKFPHIHFLENEAAVIKGVRFLGATMWTDFNLFGNPAAGMEQAAAFMNDYSAIRSRAADGNYRRFTPEITRSIHQESRAWLRQALTEGFDGPTVVVTHTSPHIMSVSEEYADDALTPAFASDFGPEIAEFEPEFWIHGHTHTGFDYIVPGSRTRVVCNPLGYRKGAARVSTMFENLVFDPYKTIEIPLAWRPLPGYVSDMRR
>NZ_CP013558.1|WP_081278590.1|43049_43451_+|helix-turn-helix-transcriptional-regulator
MTDSKVRMTRGGNVVHRQVEHVMAKIGADISLARRVRRMATDDFAKRIGVSRATLHRLEAGDPGISMNTFIMALHALGRLDALAAIVDPAHDHVTLTQMMADVPKRIAKPRATRAAALPSDHGLKSDTKYKGF
>NZ_CP013558.1|WP_064831817.1|43450_43966_+|hypothetical-protein
MTTFDEIKSSFPSLFPASARVDCGDGWAGIVGKLLDGIATTVGLPEMSQFRILSVRQDLGFMKIDAGYGGIYDDVFRPMLMLAEFRSRVTCEECGRPGHMRTTNGWKRCRCDEHSTPEEREQPPRPAWTLGRETTKGFVWYDQAADELRIVDDLASIGMPAHHIERRKDGL
>NZ_CP013558.1|WP_064831818.1|43962_44778_+|hypothetical-protein
MNSRDLDPTDEDHDWVRVPPTTQKGVAAHFAAYAEAVGEALNALPSIQIEYKHLPFGELFDPDAPLMNEVIGRAHDELNSAWKTLECLRDRLKLVARAYREDEELSAARVDAKHGIAGKRITITVDNSWGDHPIDGNWDKTIDLAKSGAFHLSYGAREDDEEFALALLFKSLGFVPNGDQPPVWTVFQTPPKGTIRRLRDGLESLGYHYRLWRKRTYRIEAELGDDDRECSLQGAPEDHVDWIMRNPDSRKSTELPPWRADEKRIVDKLLD

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP013558_1	1.1\|37740\|55\|NZ_CP013558\|CRISPRCasFinder	37740-37794	55	NZ_CP013558	Rhizobium phaseoli strain N841 plasmid pRphaN841a, complete sequence	37740-37794	0	1.0

1. spacer 1.1|37740|55|NZ_CP013558|CRISPRCasFinder matches to NZ_CP013558 (Rhizobium phaseoli strain N841 plasmid pRphaN841a, complete sequence) position: , mismatch: 0, identity: 1.0

cgatttctcggctgcccccaagcaggtcgacggccagacggaagccaaaagcgac	CRISPR spacer
cgatttctcggctgcccccaagcaggtcgacggccagacggaagccaaaagcgac	Protospacer
*******************************************************

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP013557

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP013561

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CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

3. NZ_CP013558

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection