Please click to download your results

Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP013632 Rhizobium sp. N324 plasmid pRspN324b, complete sequence 0 crisprs NA 0 0 0 0
NZ_CP013631 Rhizobium sp. N324 plasmid pRspN324a, complete sequence 0 crisprs NA 0 0 0 0
NZ_CP013635 Rhizobium sp. N324 plasmid pRspN324e, complete sequence 0 crisprs csa3 0 0 0 0
NZ_CP013634 Rhizobium sp. N324 plasmid pRspN324d, complete sequence 0 crisprs WYL,csa3,DEDDh 0 0 0 0
NZ_CP013630 Rhizobium sp. N324 chromosome RspN324, complete sequence 2 crisprs WYL,cas3,csa3,DEDDh 0 1 6 0
NZ_CP013633 Rhizobium sp. N324 plasmid pRspN324c, complete sequence 0 crisprs NA 0 0 2 0

Results visualization

1. NZ_CP013630
Click the left colored region to show detailed information
CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP013630_1 1993668-1993753 Orphan NA
1 spacers

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information
CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP013630_2 2322728-2322815 Orphan NA
1 spacers

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP013630_2 2.1|2322753|38|NZ_CP013630|CRISPRCasFinder 2322753-2322790 38 NZ_CP018232 Rhizobium leguminosarum strain Vaf-108 plasmid unnamed4, complete sequence 133750-133787 7 0.816
NZ_CP013630_2 2.1|2322753|38|NZ_CP013630|CRISPRCasFinder 2322753-2322790 38 NZ_CP022568 Rhizobium leguminosarum bv. viciae strain BIHB 1148 plasmid pSK04, complete sequence 167032-167069 7 0.816
NZ_CP013630_2 2.1|2322753|38|NZ_CP013630|CRISPRCasFinder 2322753-2322790 38 NZ_CP022667 Rhizobium leguminosarum bv. viciae strain BIHB 1217 plasmid pPR2, complete sequence 388289-388326 8 0.789
NZ_CP013630_2 2.1|2322753|38|NZ_CP013630|CRISPRCasFinder 2322753-2322790 38 NZ_CP050105 Rhizobium leguminosarum bv. trifolii strain 4B plasmid pRL4b6, complete sequence 344261-344298 8 0.789
NZ_CP013630_2 2.1|2322753|38|NZ_CP013630|CRISPRCasFinder 2322753-2322790 38 NZ_CP025508 Rhizobium leguminosarum bv. viciae strain UPM791 plasmid pRlvB, complete sequence 249352-249389 8 0.789
NZ_CP013630_2 2.1|2322753|38|NZ_CP013630|CRISPRCasFinder 2322753-2322790 38 NZ_CP050110 Rhizobium leguminosarum bv. trifolii strain 3B plasmid pRL3b4, complete sequence 344263-344300 8 0.789
NZ_CP013630_2 2.1|2322753|38|NZ_CP013630|CRISPRCasFinder 2322753-2322790 38 NZ_CP050087 Rhizobium leguminosarum bv. trifolii strain 23B plasmid pRL23b5, complete sequence 249363-249400 8 0.789
NZ_CP013630_2 2.1|2322753|38|NZ_CP013630|CRISPRCasFinder 2322753-2322790 38 NZ_CP050106 Rhizobium leguminosarum bv. trifolii strain 4B plasmid pRL4b5, complete sequence 180178-180215 8 0.789
NZ_CP013630_2 2.1|2322753|38|NZ_CP013630|CRISPRCasFinder 2322753-2322790 38 NZ_CP025017 Rhizobium leguminosarum strain Norway plasmid pRLN5, complete sequence 15274-15311 8 0.789
NZ_CP013630_2 2.1|2322753|38|NZ_CP013630|CRISPRCasFinder 2322753-2322790 38 NZ_CP025506 Rhizobium leguminosarum bv. viciae strain UPM791 plasmid pRlvE, complete sequence 172026-172063 8 0.789
NZ_CP013630_2 2.1|2322753|38|NZ_CP013630|CRISPRCasFinder 2322753-2322790 38 NZ_CP050111 Rhizobium leguminosarum bv. trifolii strain 3B plasmid pRL3b1, complete sequence 180362-180399 8 0.789
NZ_CP013630_2 2.1|2322753|38|NZ_CP013630|CRISPRCasFinder 2322753-2322790 38 NZ_CP030763 Rhizobium leguminosarum strain ATCC 14479 plasmid unnamed3, complete sequence 643358-643395 8 0.789
NZ_CP013630_2 2.1|2322753|38|NZ_CP013630|CRISPRCasFinder 2322753-2322790 38 NZ_CP022668 Rhizobium leguminosarum bv. viciae strain BIHB 1217 plasmid pPR3, complete sequence 60132-60169 8 0.789
NZ_CP013630_2 2.1|2322753|38|NZ_CP013630|CRISPRCasFinder 2322753-2322790 38 NZ_CP050088 Rhizobium leguminosarum bv. trifolii strain 23B plasmid pRL23b6, complete sequence 304573-304610 8 0.789
NZ_CP013630_2 2.1|2322753|38|NZ_CP013630|CRISPRCasFinder 2322753-2322790 38 NZ_CP020952 Rhizobium sp. CIAT894 plasmid pRheCIAT894e, complete sequence 297791-297828 9 0.763
NZ_CP013630_2 2.1|2322753|38|NZ_CP013630|CRISPRCasFinder 2322753-2322790 38 NZ_CP054033 Rhizobium sp. JKLM13E plasmid pPR13E02, complete sequence 110828-110865 9 0.763
NZ_CP013630_2 2.1|2322753|38|NZ_CP013630|CRISPRCasFinder 2322753-2322790 38 NZ_CP049731 Rhizobium leguminosarum strain A1 plasmid pRL12, complete sequence 637731-637768 10 0.737
NZ_CP013630_2 2.1|2322753|38|NZ_CP013630|CRISPRCasFinder 2322753-2322790 38 NZ_CP053206 Rhizobium leguminosarum bv. trifolii TA1 plasmid pRltTA1D, complete sequence 638921-638958 10 0.737
NZ_CP013630_2 2.1|2322753|38|NZ_CP013630|CRISPRCasFinder 2322753-2322790 38 NZ_CP050081 Rhizobium leguminosarum bv. trifolii strain 31B plasmid pRL31b5, complete sequence 603498-603535 10 0.737
NZ_CP013630_2 2.1|2322753|38|NZ_CP013630|CRISPRCasFinder 2322753-2322790 38 NZ_CP018230 Rhizobium leguminosarum strain Vaf-108 plasmid unnamed2, complete sequence 151157-151194 10 0.737
NZ_CP013630_2 2.1|2322753|38|NZ_CP013630|CRISPRCasFinder 2322753-2322790 38 NZ_CP050093 Rhizobium leguminosarum bv. trifolii strain 22B plasmid pRL22b5, complete sequence 248419-248456 11 0.711
NZ_CP013630_2 2.1|2322753|38|NZ_CP013630|CRISPRCasFinder 2322753-2322790 38 NC_008384 Rhizobium leguminosarum bv. viciae 3841 plasmid pRL11, complete sequence 399742-399779 11 0.711
NZ_CP013630_2 2.1|2322753|38|NZ_CP013630|CRISPRCasFinder 2322753-2322790 38 NZ_CP016289 Rhizobium leguminosarum strain Vaf10 plasmid unnamed2, complete sequence 476519-476556 11 0.711

1. spacer 2.1|2322753|38|NZ_CP013630|CRISPRCasFinder matches to NZ_CP018232 (Rhizobium leguminosarum strain Vaf-108 plasmid unnamed4, complete sequence) position: , mismatch: 7, identity: 0.816

acgagagattgagcaattccagcaagagtgcgcaacgg	CRISPR spacer
atgcgacctagagcaattccagcaaaagtgcgcagcgg	Protospacer
*.* **  * ***************.********.***

2. spacer 2.1|2322753|38|NZ_CP013630|CRISPRCasFinder matches to NZ_CP022568 (Rhizobium leguminosarum bv. viciae strain BIHB 1148 plasmid pSK04, complete sequence) position: , mismatch: 7, identity: 0.816

acgagagattgagcaattccagcaagagtgcgcaacgg	CRISPR spacer
atgcgacctagagcaattccagcaaaagtgcgcagcgg	Protospacer
*.* **  * ***************.********.***

3. spacer 2.1|2322753|38|NZ_CP013630|CRISPRCasFinder matches to NZ_CP022667 (Rhizobium leguminosarum bv. viciae strain BIHB 1217 plasmid pPR2, complete sequence) position: , mismatch: 8, identity: 0.789

acgagagattgagcaattccagcaagagtgcgcaacgg	CRISPR spacer
ctgttggctagagcaattccagcaagagtgcgcagcgg	Protospacer
 .*  .* * ************************.***

4. spacer 2.1|2322753|38|NZ_CP013630|CRISPRCasFinder matches to NZ_CP050105 (Rhizobium leguminosarum bv. trifolii strain 4B plasmid pRL4b6, complete sequence) position: , mismatch: 8, identity: 0.789

acgagagattgagcaattccagcaagagtgcgcaacgg	CRISPR spacer
ctgttggctagagcaattccagcaagagtgcgcagcgg	Protospacer
 .*  .* * ************************.***

5. spacer 2.1|2322753|38|NZ_CP013630|CRISPRCasFinder matches to NZ_CP025508 (Rhizobium leguminosarum bv. viciae strain UPM791 plasmid pRlvB, complete sequence) position: , mismatch: 8, identity: 0.789

acgagagattgagcaattccagcaagagtgcgcaacgg	CRISPR spacer
ctgttggctagagcaattccagcaagagtgcgcagcgg	Protospacer
 .*  .* * ************************.***

6. spacer 2.1|2322753|38|NZ_CP013630|CRISPRCasFinder matches to NZ_CP050110 (Rhizobium leguminosarum bv. trifolii strain 3B plasmid pRL3b4, complete sequence) position: , mismatch: 8, identity: 0.789

acgagagattgagcaattccagcaagagtgcgcaacgg	CRISPR spacer
ctgttggctagagcaattccagcaagagtgcgcagcgg	Protospacer
 .*  .* * ************************.***

7. spacer 2.1|2322753|38|NZ_CP013630|CRISPRCasFinder matches to NZ_CP050087 (Rhizobium leguminosarum bv. trifolii strain 23B plasmid pRL23b5, complete sequence) position: , mismatch: 8, identity: 0.789

acgagagattgagcaattccagcaagagtgcgcaacgg	CRISPR spacer
ctgttggctagagcaattccagcaagagtgcgcagcgg	Protospacer
 .*  .* * ************************.***

8. spacer 2.1|2322753|38|NZ_CP013630|CRISPRCasFinder matches to NZ_CP050106 (Rhizobium leguminosarum bv. trifolii strain 4B plasmid pRL4b5, complete sequence) position: , mismatch: 8, identity: 0.789

acgagagattgagcaattccagcaagagtgcgcaacgg	CRISPR spacer
aggcggcctagagcaattccagcaaaagtgcgcagcgg	Protospacer
* * *.  * ***************.********.***

9. spacer 2.1|2322753|38|NZ_CP013630|CRISPRCasFinder matches to NZ_CP025017 (Rhizobium leguminosarum strain Norway plasmid pRLN5, complete sequence) position: , mismatch: 8, identity: 0.789

acgagagatt-----gagcaattccagcaagagtgcgcaacgg	CRISPR spacer
-----tgatttcgtagagcaattccagcaaaagtgcgcagcgg	Protospacer
      ****     ***************.********.***

10. spacer 2.1|2322753|38|NZ_CP013630|CRISPRCasFinder matches to NZ_CP025506 (Rhizobium leguminosarum bv. viciae strain UPM791 plasmid pRlvE, complete sequence) position: , mismatch: 8, identity: 0.789

acgagagattgagcaattccagcaagagtgcgcaacgg	CRISPR spacer
aggcggcctagagcaattccagcaaaagtgcgcagcgg	Protospacer
* * *.  * ***************.********.***

11. spacer 2.1|2322753|38|NZ_CP013630|CRISPRCasFinder matches to NZ_CP050111 (Rhizobium leguminosarum bv. trifolii strain 3B plasmid pRL3b1, complete sequence) position: , mismatch: 8, identity: 0.789

acgagagattgagcaattccagcaagagtgcgcaacgg	CRISPR spacer
aggcggcctagagcaattccagcaaaagtgcgcagcgg	Protospacer
* * *.  * ***************.********.***

12. spacer 2.1|2322753|38|NZ_CP013630|CRISPRCasFinder matches to NZ_CP030763 (Rhizobium leguminosarum strain ATCC 14479 plasmid unnamed3, complete sequence) position: , mismatch: 8, identity: 0.789

acgagagattgagcaattccagcaagagtgcgcaacgg	CRISPR spacer
aggcggcctagagcaattccagcaaaagtgcgcagcgg	Protospacer
* * *.  * ***************.********.***

13. spacer 2.1|2322753|38|NZ_CP013630|CRISPRCasFinder matches to NZ_CP022668 (Rhizobium leguminosarum bv. viciae strain BIHB 1217 plasmid pPR3, complete sequence) position: , mismatch: 8, identity: 0.789

acgagagattgagcaattccagcaagagtgcgcaacgg	CRISPR spacer
aggcggcctagagcaattccagcaaaagtgcgcagcgg	Protospacer
* * *.  * ***************.********.***

14. spacer 2.1|2322753|38|NZ_CP013630|CRISPRCasFinder matches to NZ_CP050088 (Rhizobium leguminosarum bv. trifolii strain 23B plasmid pRL23b6, complete sequence) position: , mismatch: 8, identity: 0.789

acgagagattgagcaattccagcaagagtgcgcaacgg	CRISPR spacer
aggcggcctagagcaattccagcaaaagtgcgcagcgg	Protospacer
* * *.  * ***************.********.***

15. spacer 2.1|2322753|38|NZ_CP013630|CRISPRCasFinder matches to NZ_CP020952 (Rhizobium sp. CIAT894 plasmid pRheCIAT894e, complete sequence) position: , mismatch: 9, identity: 0.763

acgagagattgagcaattccagcaagagtgcgcaacgg	CRISPR spacer
gccgtgcctggagcaattccagcaagagtgcgcagcgg	Protospacer
.* . .  * ************************.***

16. spacer 2.1|2322753|38|NZ_CP013630|CRISPRCasFinder matches to NZ_CP054033 (Rhizobium sp. JKLM13E plasmid pPR13E02, complete sequence) position: , mismatch: 9, identity: 0.763

acgagagattgagcaattccagcaagagtgcgcaacgg	CRISPR spacer
cggtgacggtaagcagttccagcaaaagtgcgcaacgg	Protospacer
  * ** . *.****.*********.************

17. spacer 2.1|2322753|38|NZ_CP013630|CRISPRCasFinder matches to NZ_CP049731 (Rhizobium leguminosarum strain A1 plasmid pRL12, complete sequence) position: , mismatch: 10, identity: 0.737

acgagagattgagcaattccagcaagagtgcgcaacgg	CRISPR spacer
gatggttctggagcaattccagcaaaagtgcgcagcgg	Protospacer
.  .*   * ***************.********.***

18. spacer 2.1|2322753|38|NZ_CP013630|CRISPRCasFinder matches to NZ_CP053206 (Rhizobium leguminosarum bv. trifolii TA1 plasmid pRltTA1D, complete sequence) position: , mismatch: 10, identity: 0.737

acgagagattgagcaattccagcaagagtgcgcaacgg	CRISPR spacer
gatggttctggagcaattccagcaaaagtgcgcagcgg	Protospacer
.  .*   * ***************.********.***

19. spacer 2.1|2322753|38|NZ_CP013630|CRISPRCasFinder matches to NZ_CP050081 (Rhizobium leguminosarum bv. trifolii strain 31B plasmid pRL31b5, complete sequence) position: , mismatch: 10, identity: 0.737

acgagagattgagcaattccagcaagagtgcgcaacgg	CRISPR spacer
gatggttctggagcaattccagcaaaagtgcgcagcgg	Protospacer
.  .*   * ***************.********.***

20. spacer 2.1|2322753|38|NZ_CP013630|CRISPRCasFinder matches to NZ_CP018230 (Rhizobium leguminosarum strain Vaf-108 plasmid unnamed2, complete sequence) position: , mismatch: 10, identity: 0.737

acgagagattgagcaattccagcaagagtgcgcaacgg	CRISPR spacer
tcccgctctaaagcaattccagcaaaagtgcgcagcgg	Protospacer
 *  *   * .**************.********.***

21. spacer 2.1|2322753|38|NZ_CP013630|CRISPRCasFinder matches to NZ_CP050093 (Rhizobium leguminosarum bv. trifolii strain 22B plasmid pRL22b5, complete sequence) position: , mismatch: 11, identity: 0.711

acgagagattgagcaattccagcaagagtgcgcaacgg	CRISPR spacer
agcgcgcctaaagcaattccagcaaaagtgcgcagcgg	Protospacer
*  . .  * .**************.********.***

22. spacer 2.1|2322753|38|NZ_CP013630|CRISPRCasFinder matches to NC_008384 (Rhizobium leguminosarum bv. viciae 3841 plasmid pRL11, complete sequence) position: , mismatch: 11, identity: 0.711

acgagagattgagcaattccagcaagagtgcgcaacgg	CRISPR spacer
agcgcgcctaaagcaattccagcaaaagtgcgcagcgg	Protospacer
*  . .  * .**************.********.***

23. spacer 2.1|2322753|38|NZ_CP013630|CRISPRCasFinder matches to NZ_CP016289 (Rhizobium leguminosarum strain Vaf10 plasmid unnamed2, complete sequence) position: , mismatch: 11, identity: 0.711

acgagagatt--------gagcaattccagcaagagtgcgcaacgg	CRISPR spacer
--------ttccccctcagagcaattccagcaaaagtgcgcagcgc	Protospacer
        **        ***************.********.** 

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 1634260 : 1643390 9 Enterobacteria_phage(28.57%) NA NA
DBSCAN-SWA_2 1972271 : 1985353 13 uncultured_Mediterranean_phage(90.91%) tRNA NA
DBSCAN-SWA_3 2050140 : 2058733 6 Sulfitobacter_phage(33.33%) tail NA
DBSCAN-SWA_4 2253998 : 2264204 9 uncultured_Mediterranean_phage(66.67%) NA NA
DBSCAN-SWA_5 3777868 : 3837244 85 Rhizobium_phage(64.0%) portal,tail,capsid,terminase,head,protease,tRNA NA
DBSCAN-SWA_6 4152029 : 4162461 9 Mycobacterium_phage(25.0%) NA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
2. NZ_CP013633
Click the left colored region to show detailed information
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 54280 : 121140 50 Acinetobacter_phage(28.57%) protease,transposase NA
DBSCAN-SWA_2 226930 : 268020 22 Leptospira_phage(50.0%) plate,transposase NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage