CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Prophage number
NZ_CP013591	Rhizobium sp. N871 plasmid pRspN871a, complete sequence	0 crisprs	NA	0
NZ_CP013593	Rhizobium sp. N871 plasmid pRspN871c, complete sequence	0 crisprs	csa3,DEDDh	0
NZ_CP013594	Rhizobium sp. N871 plasmid pRspN871d, complete sequence	0 crisprs	csa3	0
NZ_CP013592	Rhizobium sp. N871 plasmid pRspN871b, complete sequence	0 crisprs	NA	1
NZ_CP013590	Rhizobium sp. N871 chromosome, complete genome	0 crisprs	WYL,csa3,cas3,DEDDh,RT	5

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

243000 : 279543

Porcine_endogenous_retrovirus(100.0%)

plate,transposase

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_064812000.1\|243000_244227_-\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA
WP_008536039.1\|244190_246077_-\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
WP_004680427.1\|246076_246580_-\|plate	type VI secretion system baseplate subunit TssE	NA	NA	NA	NA
WP_004680426.1\|246666_247200_-	type VI secretion system tube protein Hcp	NA	NA	NA	NA
WP_004680425.1\|247315_248803_-	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA
WP_016737476.1\|248805_249360_-	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA
WP_004680423.1\|249395_250388_-	type VI secretion system protein TssA	NA	NA	NA	NA
WP_064824610.1\|252086_254366_-	hypothetical protein	NA	NA	NA	NA
WP_016737477.1\|256922_258278_+\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA
WP_008536064.1\|258339_259506_+	FHA domain-containing protein	NA	NA	NA	NA
WP_008536065.1\|259505_260795_+	type VI secretion system protein TssL	NA	NA	NA	NA
WP_012489525.1\|260804_264410_+	type VI secretion system membrane subunit TssM	NA	NA	NA	NA
WP_012489526.1\|264706_266323_+	hypothetical protein	NA	NA	NA	NA
WP_170960111.1\|266493_266661_+	hypothetical protein	NA	NA	NA	NA
WP_012489527.1\|268002_269013_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_064812001.1\|272031_272919_-	hypothetical protein	NA	NA	NA	NA
WP_011053406.1\|276667_277834_+\|transposase	IS110-like element ISRel9 family transposase	NA	NA	NA	NA
WP_064810414.1\|278169_279543_-\|transposase	ISNCY-like element ISRel26 family transposase	A1YTJ2	Porcine_endogenous_retrovirus	1.4e-05	26.8

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP013590

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1089034 : 1102355

EBPR_podovirus(33.33%)

tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_064824519.1\|1089034_1090471_+	DNA packaging protein	C8CLI4	Xylella_phage	1.7e-160	62.6
WP_064824521.1\|1092574_1092811_+	hypothetical protein	NA	NA	NA	NA
WP_064824522.1\|1092845_1093826_+	hypothetical protein	F8TUR8	EBPR_podovirus	7.8e-32	36.0
WP_064824523.1\|1093850_1094846_+	DUF5309 domain-containing protein	F8TUR9	EBPR_podovirus	3.6e-133	72.8
WP_064824524.1\|1094858_1095296_+	hypothetical protein	A0A218MMG4	uncultured_virus	1.7e-15	38.7
WP_167377180.1\|1095350_1095524_+	hypothetical protein	NA	NA	NA	NA
WP_064824525.1\|1095520_1095841_+	hypothetical protein	F8TUS1	EBPR_podovirus	5.0e-28	53.8
WP_064824526.1\|1095840_1096431_+	hypothetical protein	A0A088F6W5	Sulfitobacter_phage	2.9e-37	45.1
WP_064824527.1\|1096427_1097045_+	hypothetical protein	NA	NA	NA	NA
WP_064824528.1\|1097035_1098634_+	hypothetical protein	M4QM83	Sulfitobacter_phage	2.1e-135	49.2
WP_167377205.1\|1098633_1099104_+	N-acetyltransferase	NA	NA	NA	NA
WP_064824530.1\|1099100_1100120_+\|tail	tail fiber domain-containing protein	M4NM77	Sulfitobacter_phage	1.1e-76	51.7
WP_064824531.1\|1100120_1102355_+	hypothetical protein	A0A0E3JI98	Rhodoferax_phage	3.1e-15	37.0

DBSCAN-SWA_2

1921689 : 1928952

uncultured_Mediterranean_phage(100.0%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_064810187.1\|1921689_1922703_+	beta-N-acetylhexosaminidase	A0A1B1IVS3	uncultured_Mediterranean_phage	2.1e-24	42.6
WP_064810188.1\|1922721_1923579_+	segregation/condensation protein A	A0A1B1IVW1	uncultured_Mediterranean_phage	5.6e-34	37.2
WP_064810189.1\|1923575_1924280_+	SMC-Scp complex subunit ScpB	A0A1B1IVT7	uncultured_Mediterranean_phage	9.6e-40	46.4
WP_011425113.1\|1924462_1924654_+	twin-arginine translocase TatA/TatE family subunit	A0A1B1IVR9	uncultured_Mediterranean_phage	6.8e-09	72.1
WP_064810190.1\|1924705_1925320_+	twin-arginine translocase subunit TatB	NA	NA	NA	NA
WP_064802115.1\|1925316_1926144_+	twin-arginine translocase subunit TatC	A0A1B1IVR7	uncultured_Mediterranean_phage	5.2e-53	46.1
WP_064810191.1\|1926240_1927524_+\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	1.1e-97	46.2
WP_064810192.1\|1927528_1928302_+	5'/3'-nucleotidase SurE	A0A1B1ITZ2	uncultured_Mediterranean_phage	1.4e-23	30.2
WP_064810193.1\|1928298_1928952_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	6.8e-16	35.7

DBSCAN-SWA_3

2213688 : 2222998

uncultured_Mediterranean_phage(83.33%)

transposase,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_064802585.1\|2213688_2216478_+	DNA gyrase subunit A	A0A1B1IVS2	uncultured_Mediterranean_phage	3.9e-76	42.2
WP_064809302.1\|2216613_2217984_-\|transposase	IS1182 family transposase	A0A1X9I5T2	Streptococcus_phage	1.7e-80	38.3
WP_003539654.1\|2218372_2218528_-	hypothetical protein	NA	NA	NA	NA
WP_064810391.1\|2219062_2219575_+	pantetheine-phosphate adenylyltransferase	A0A1B1IVQ3	uncultured_Mediterranean_phage	5.3e-24	37.2
WP_064810392.1\|2219601_2220174_+	peptidylprolyl isomerase	A0A1B1IVS0	uncultured_Mediterranean_phage	1.3e-42	54.7
WP_064802591.1\|2220202_2220712_+	peptidylprolyl isomerase	A0A1B1IVS0	uncultured_Mediterranean_phage	9.3e-45	58.8
WP_064810393.1\|2220784_2221867_+\|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	NA	NA	NA	NA
WP_064810394.1\|2221867_2222998_+\|tRNA	tRNA guanosine(34) transglycosylase Tgt	A0A1B1IVQ4	uncultured_Mediterranean_phage	3.1e-101	52.9

DBSCAN-SWA_4

3137135 : 3146428

Rhizobium_phage(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_064824585.1\|3137135_3138188_-	non-homologous end-joining DNA ligase	A0A068CDF3	Rhizobium_phage	6.7e-138	68.1
WP_064824587.1\|3138873_3139626_+	SOS response-associated peptidase family protein	A0A291AUP1	Sinorhizobium_phage	3.9e-39	39.7
WP_064824588.1\|3139630_3139855_+	hypothetical protein	NA	NA	NA	NA
WP_064824589.1\|3139851_3140226_+	thermonuclease family protein	G8DH70	Emiliania_huxleyi_virus	6.9e-21	46.2
WP_064824604.1\|3140229_3140535_-	hypothetical protein	NA	NA	NA	NA
WP_064815511.1\|3140690_3140969_-	hypothetical protein	NA	NA	NA	NA
WP_064824590.1\|3141031_3142891_-	AAA family ATPase	R4TQL5	Phaeocystis_globosa_virus	1.5e-23	28.3
WP_064824591.1\|3143098_3143434_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_064824592.1\|3143888_3144428_-	ATP-dependent DNA helicase RecQ	A0A2K9L3P7	Tupanvirus	7.9e-26	44.5
WP_064810888.1\|3144427_3146428_-	DNA primase	A0A0K1LMQ9	Caulobacter_phage	1.4e-88	41.4

DBSCAN-SWA_5

4041598 : 4051926

Mycobacterium_phage(28.57%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_064811420.1\|4041598_4042309_+	7-cyano-7-deazaguanine synthase QueC	A0A2P1JXV3	Rhodococcus_phage	3.3e-48	47.3
WP_064805162.1\|4042308_4042665_+	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA
WP_064811421.1\|4042661_4043390_+	7-carboxy-7-deazaguanine synthase QueE	A0A1U9WRB6	Streptococcus_virus	1.8e-41	37.8
WP_064811422.1\|4043498_4044722_-	adenylate/guanylate cyclase domain-containing protein	M1HLN3	Pelagibacter_phage	1.1e-14	30.3
WP_064811423.1\|4044825_4045800_-	class 1b ribonucleoside-diphosphate reductase subunit beta	R4TBI6	Mycobacterium_phage	2.8e-138	74.8
WP_064811424.1\|4045993_4048162_-	class 1b ribonucleoside-diphosphate reductase subunit alpha	A8E2R1	Enterococcus_phage	1.7e-212	52.1
WP_064811425.1\|4048140_4048554_-	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA	NA	NA	NA
WP_064811426.1\|4048567_4048789_-	glutaredoxin-like protein NrdH	V5UN81	Mycobacterium_phage	6.7e-16	52.1
WP_064811772.1\|4049688_4051926_-	cadmium-translocating P-type ATPase	E4ZFI9	Streptococcus_phage	6.8e-124	40.8

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP013592

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP013590

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection