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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP021071 Mesorhizobium sp. WSM1497 plasmid pWSM1497, complete sequence 0 crisprs csa3 0 0 0 0
NZ_CP021070 Mesorhizobium sp. WSM1497 chromosome, complete genome 8 crisprs csa3,DEDDh,WYL,cas3 0 1 2 0

Results visualization

1. NZ_CP021070
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP021070_1 1296239-1296384 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP021070_2 1890790-1890879 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP021070_3 1891144-1891223 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP021070_4 1892194-1892277 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP021070_5 1892533-1892631 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP021070_6 1893007-1893068 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP021070_7 2016964-2017040 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP021070_8 3540639-3540734 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP021070_7 7.1|2016987|31|NZ_CP021070|CRISPRCasFinder 2016987-2017017 31 NZ_CP018096 Chelatococcus daeguensis strain TAD1 plasmid pTAD1, complete sequence 117980-118010 3 0.903
NZ_CP021070_7 7.1|2016987|31|NZ_CP021070|CRISPRCasFinder 2016987-2017017 31 NZ_KX443401 Rhodococcus hoagii strain PAM1572 plasmid pVAPN1572, complete sequence 17301-17331 6 0.806
NZ_CP021070_7 7.1|2016987|31|NZ_CP021070|CRISPRCasFinder 2016987-2017017 31 NZ_KX443399 Rhodococcus hoagii strain PAM1354 plasmid pVAPA1354, complete sequence 17913-17943 6 0.806
NZ_CP021070_7 7.1|2016987|31|NZ_CP021070|CRISPRCasFinder 2016987-2017017 31 NZ_KX443400 Rhodococcus hoagii strain PAM1557 plasmid pVAPN1557, complete sequence 17859-17889 6 0.806
NZ_CP021070_7 7.1|2016987|31|NZ_CP021070|CRISPRCasFinder 2016987-2017017 31 NZ_KX443398 Rhodococcus hoagii strain PAM1204 plasmid pVAPN1204, complete sequence 17937-17967 6 0.806
NZ_CP021070_7 7.1|2016987|31|NZ_CP021070|CRISPRCasFinder 2016987-2017017 31 NZ_KP851975 Rhodococcus hoagii strain PAM2012 plasmid pVAPN2012, complete sequence 17989-18019 6 0.806
NZ_CP021070_7 7.1|2016987|31|NZ_CP021070|CRISPRCasFinder 2016987-2017017 31 NZ_KF439868 Rhodococcus hoagii strain PAM1571 plasmid pVAPN1571, complete sequence 17006-17036 6 0.806
NZ_CP021070_7 7.1|2016987|31|NZ_CP021070|CRISPRCasFinder 2016987-2017017 31 NZ_LR134456 Tsukamurella tyrosinosolvens strain NCTC13231 plasmid 14, complete sequence 284108-284138 7 0.774
NZ_CP021070_7 7.1|2016987|31|NZ_CP021070|CRISPRCasFinder 2016987-2017017 31 NZ_CP006368 Aureimonas sp. AU20 plasmid pAU20a, complete sequence 404189-404219 7 0.774
NZ_CP021070_7 7.1|2016987|31|NZ_CP021070|CRISPRCasFinder 2016987-2017017 31 NC_009620 Sinorhizobium medicae WSM419 plasmid pSMED01, complete sequence 23621-23651 8 0.742
NZ_CP021070_7 7.1|2016987|31|NZ_CP021070|CRISPRCasFinder 2016987-2017017 31 NC_021077 Comamonas sp. 7D-2 plasmid pBHB, complete sequence 60659-60689 8 0.742
NZ_CP021070_7 7.1|2016987|31|NZ_CP021070|CRISPRCasFinder 2016987-2017017 31 NZ_CP054022 Rhizobium sp. JKLM12A2 plasmid pPR12A201, complete sequence 867552-867582 8 0.742
NZ_CP021070_7 7.1|2016987|31|NZ_CP021070|CRISPRCasFinder 2016987-2017017 31 NC_022049 Paracoccus aminophilus JCM 7686 plasmid pAMI4, complete sequence 193992-194022 8 0.742
NZ_CP021070_7 7.1|2016987|31|NZ_CP021070|CRISPRCasFinder 2016987-2017017 31 NC_016624 Azospirillum lipoferum 4B plasmid AZO_p5, complete sequence 107441-107471 10 0.677

1. spacer 7.1|2016987|31|NZ_CP021070|CRISPRCasFinder matches to NZ_CP018096 (Chelatococcus daeguensis strain TAD1 plasmid pTAD1, complete sequence) position: , mismatch: 3, identity: 0.903

agcg-gcttcagccggtgcgggcgccggggtg	CRISPR spacer
-gcgtgcttcagccagtgccggcgccggggtg	Protospacer
 *** *********.**** ************

2. spacer 7.1|2016987|31|NZ_CP021070|CRISPRCasFinder matches to NZ_KX443401 (Rhodococcus hoagii strain PAM1572 plasmid pVAPN1572, complete sequence) position: , mismatch: 6, identity: 0.806

agcggcttc---agccggtgcgggcgccggggtg	CRISPR spacer
---gggctcgggagccggtgcgggtgccggggtg	Protospacer
   ** .**   ************.*********

3. spacer 7.1|2016987|31|NZ_CP021070|CRISPRCasFinder matches to NZ_KX443399 (Rhodococcus hoagii strain PAM1354 plasmid pVAPA1354, complete sequence) position: , mismatch: 6, identity: 0.806

agcggcttc---agccggtgcgggcgccggggtg	CRISPR spacer
---gggctcgggagccggtgcgggtgccggggtg	Protospacer
   ** .**   ************.*********

4. spacer 7.1|2016987|31|NZ_CP021070|CRISPRCasFinder matches to NZ_KX443400 (Rhodococcus hoagii strain PAM1557 plasmid pVAPN1557, complete sequence) position: , mismatch: 6, identity: 0.806

agcggcttc---agccggtgcgggcgccggggtg	CRISPR spacer
---gggctcgggagccggtgcgggtgccggggtg	Protospacer
   ** .**   ************.*********

5. spacer 7.1|2016987|31|NZ_CP021070|CRISPRCasFinder matches to NZ_KX443398 (Rhodococcus hoagii strain PAM1204 plasmid pVAPN1204, complete sequence) position: , mismatch: 6, identity: 0.806

agcggcttc---agccggtgcgggcgccggggtg	CRISPR spacer
---gggctcgggagccggtgcgggtgccggggtg	Protospacer
   ** .**   ************.*********

6. spacer 7.1|2016987|31|NZ_CP021070|CRISPRCasFinder matches to NZ_KP851975 (Rhodococcus hoagii strain PAM2012 plasmid pVAPN2012, complete sequence) position: , mismatch: 6, identity: 0.806

agcggcttc---agccggtgcgggcgccggggtg	CRISPR spacer
---gggctcgggagccggtgcgggtgccggggtg	Protospacer
   ** .**   ************.*********

7. spacer 7.1|2016987|31|NZ_CP021070|CRISPRCasFinder matches to NZ_KF439868 (Rhodococcus hoagii strain PAM1571 plasmid pVAPN1571, complete sequence) position: , mismatch: 6, identity: 0.806

agcggcttc---agccggtgcgggcgccggggtg	CRISPR spacer
---gggctcgggagccggtgcgggtgccggggtg	Protospacer
   ** .**   ************.*********

8. spacer 7.1|2016987|31|NZ_CP021070|CRISPRCasFinder matches to NZ_LR134456 (Tsukamurella tyrosinosolvens strain NCTC13231 plasmid 14, complete sequence) position: , mismatch: 7, identity: 0.774

--agcggcttcagccggtgcgggcgccggggtg	CRISPR spacer
ctatcag--gcagccgatgcgggcgcccgggtg	Protospacer
  * *.*   ******.********** *****

9. spacer 7.1|2016987|31|NZ_CP021070|CRISPRCasFinder matches to NZ_CP006368 (Aureimonas sp. AU20 plasmid pAU20a, complete sequence) position: , mismatch: 7, identity: 0.774

agcggcttcagccggtgcgggcgccggggtg	CRISPR spacer
accggcttcagccggttctggcgccattggg	Protospacer
* ************** * ******.  * *

10. spacer 7.1|2016987|31|NZ_CP021070|CRISPRCasFinder matches to NC_009620 (Sinorhizobium medicae WSM419 plasmid pSMED01, complete sequence) position: , mismatch: 8, identity: 0.742

agcggcttcagccggtgcgggcgccggggtg	CRISPR spacer
cgccgcgtcagccggtgcgggcgccagctcc	Protospacer
 ** ** ******************.*  . 

11. spacer 7.1|2016987|31|NZ_CP021070|CRISPRCasFinder matches to NC_021077 (Comamonas sp. 7D-2 plasmid pBHB, complete sequence) position: , mismatch: 8, identity: 0.742

agcggcttcagccggtgcgggcgccggggtg	CRISPR spacer
agcggcatcagccggtgccggcgcttcgtat	Protospacer
****** *********** *****.  *   

12. spacer 7.1|2016987|31|NZ_CP021070|CRISPRCasFinder matches to NZ_CP054022 (Rhizobium sp. JKLM12A2 plasmid pPR12A201, complete sequence) position: , mismatch: 8, identity: 0.742

agcggcttcagccggtgcgggcgccggggtg	CRISPR spacer
agccgcttcagccggtgcggtcggaagcatc	Protospacer
*** **************** **  .* .* 

13. spacer 7.1|2016987|31|NZ_CP021070|CRISPRCasFinder matches to NC_022049 (Paracoccus aminophilus JCM 7686 plasmid pAMI4, complete sequence) position: , mismatch: 8, identity: 0.742

agcggcttcagccggtgcgggcgccggggtg	CRISPR spacer
agcgtcttgagccggtgcgggcgtgtcaggg	Protospacer
**** *** **************.   .* *

14. spacer 7.1|2016987|31|NZ_CP021070|CRISPRCasFinder matches to NC_016624 (Azospirillum lipoferum 4B plasmid AZO_p5, complete sequence) position: , mismatch: 10, identity: 0.677

agcggcttcagccggtgcgggcgccggggtg	CRISPR spacer
agcggcttcagccggtgcaggctgtcataca	Protospacer
******************.***  . . ...

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 2779475 : 2786703 9 Burkholderia_phage(50.0%) NA NA
DBSCAN-SWA_2 6341657 : 6417051 52 Stx2-converting_phage(22.22%) transposase,integrase attL 6360073:6360132|attR 6416881:6416977
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage