CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP016080	Mesorhizobium loti NZP2037 plasmid pML2037, complete sequence	1 crisprs	NA	1	2	0	0
NZ_CP016079	Mesorhizobium loti NZP2037 chromosome, complete genome	2 crisprs	WYL,csa3,DEDDh,RT,cas3	0	1	5	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP016080_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP016080_1

283652-283791

Orphan

Consensus_repeat	Method
GGAGTGCTAGGAGTACTAGGAGTACTAGGAGT	CRISPRCasFinder

2 spacers

The CRISPR arrays of NZ_CP016080_1

>merge|NZ_CP016080|1|283652-283791|CRISPRCasFinder
GGAGTACTCGGTGTACTAGCGGTGCCAGGGCTCCCTTGGGTACCGGAGATATTGGGAGTGCTAGGAGTACTAGGAGTACTAGGAGTACTAGGAGTACTAGGAGTACTAGGAGTACTAGGAGTACTAGGAGTACTAGGAGT

>NZ_CP016080|1|1|283652-283791|CRISPRCasFinder
GGAGTACTCGGTGTACTAGCGGTGCCAGGGCT	CCCTTGGGTACCGGAGATATTG
GGAGTGCTAGGAGTACTAGGAGTACTAGGAGT	ACTAGGAGTACTAGGAGTACTA
GGAGTACTAGGAGTACTAGGAGTACTAGGAGT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP016080.1\|WP_027047861.1\|276338_276563_+\|DUF2274-domain-containing-protein	unknown	unknown	gnl\|CDD\|370791
NZ_CP016080.1\|WP_051112942.1\|277087_277402_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP016080.1\|WP_019863684.1\|279849_280449_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|377558
NZ_CP016080.1\|WP_019863685.1\|279000_279792_+\|exodeoxyribonuclease-III	unknown	unknown	gnl\|CDD\|197320
NZ_CP016080.1\|WP_019863671.1\|290466_290784_-\|glycine-zipper-2TM-domain-containing-protein	unknown	unknown	gnl\|CDD\|274783
NZ_CP016080.1\|WP_019863692.1\|275179_276337_+\|TrbI/VirB10-family-protein	unknown	unknown	gnl\|CDD\|225499
NZ_CP016080.1\|WP_020629183.1\|286743_286890_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP016080.1\|WP_155249183.1\|278591_278750_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP016080.1\|WP_019863686.1\|278773_278956_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP016080.1\|WP_032921586.1\|289843_290473_+\|methyltransferase-domain-containing-protein	unknown	unknown	gnl\|CDD\|372616
NZ_CP016080.1\|WP_080643894.1\|294209_295106_+\|c-type-cytochrome	unknown	unknown	gnl\|CDD\|226005
NZ_CP016080.1\|WP_027047858.1\|285076_285280_+\|CsbD-family-protein	unknown	unknown	gnl\|CDD\|225777
NZ_CP016080.1\|WP_027047857.1\|291091_292651_+\|recombinase-family-protein	unknown	unknown	gnl\|CDD\|214861
NZ_CP016080.1\|WP_019863669.1\|292647_293496_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|311449
NZ_CP016080.1\|WP_019863667.1\|293513_293975_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP016080.1\|WP_019863687.1\|277894_278143_+\|DUF768-domain-containing-protein	unknown	unknown	gnl\|CDD\|283283
NZ_CP016080.1\|WP_019863674.1\|287188_288184_+\|murein-L,D-transpeptidase	unknown	unknown	gnl\|CDD\|224294
NZ_CP016080.1\|WP_027047859.1\|280470_281214_-\|DUF4142-domain-containing-protein	unknown	unknown	gnl\|CDD\|379301
NZ_CP016080.1\|WP_019863681.1\|282254_282644_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP016080.1\|WP_032920931.1\|286154_286562_-\|DUF427-domain-containing-protein	unknown	unknown	gnl\|CDD\|225220

Protein	Function_ID	Function_description	E-value
NZ_CP016080.1\|WP_027047861.1\|276338_276563_+\|DUF2274-domain-containing-protein	gnl\|CDD\|370791	pfam10038, DUF2274, Protein of unknown function (DUF2274). Members of this family of hypothetical bacterial proteins have no known function.	5.86594e-34
NZ_CP016080.1\|WP_019863685.1\|279000_279792_+\|exodeoxyribonuclease-III	gnl\|CDD\|197320	cd09086, ExoIII-like_AP-endo, Escherichia coli exonuclease III (ExoIII) and Neisseria meningitides NExo-like subfamily of the ExoIII family purinic/apyrimidinic (AP) endonucleases. This subfamily includes Escherichia coli ExoIII, Neisseria meningitides NExo,and related proteins. These are ExoIII family AP endonucleases and they belong to the large EEP (exonuclease/endonuclease/phosphatase) superfamily that contains functionally diverse enzymes that share a common catalytic mechanism of cleaving phosphodiester bonds. AP endonucleases participate in the DNA base excision repair (BER) pathway. AP sites are one of the most common lesions in cellular DNA. During BER, the damaged DNA is first recognized by DNA glycosylase. AP endonucleases then catalyze the hydrolytic cleavage of the phosphodiester bond 5' to the AP site, and this is followed by the coordinated actions of DNA polymerase, deoxyribose phosphatase, and DNA ligase. If left unrepaired, AP sites block DNA replication, and have both mutagenic and cytotoxic effects. AP endonucleases can carry out a variety of excision and incision reactions on DNA, including 3'-5' exonuclease, 3'-deoxyribose phosphodiesterase, 3'-phosphatase, and occasionally, nonspecific DNase activities. Different AP endonuclease enzymes catalyze the different reactions with different efficiencies. Many organisms have two AP endonucleases, usually one is the dominant AP endonuclease, the other has weak AP endonuclease activity. For example, Neisseria meningitides Nape and NExo, and exonuclease III (ExoIII) and endonuclease IV (EndoIV) in Escherichia coli. NExo and ExoIII are found in this subfamily. NExo is the non-dominant AP endonuclease. It exhibits strong 3'-5' exonuclease and 3'-deoxyribose phosphodiesterase activities. Escherichia coli ExoIII is an active AP endonuclease, and in addition, it exhibits double strand (ds)-specific 3'-5' exonuclease, exonucleolytic RNase H, 3'-phosphomonoesterase and 3'-phosphodiesterase activities, all catalyzed by a single active site. Class II AP endonucleases have been classified into two families, designated ExoIII and EndoIV, based on their homology to the Escherichia coli enzymes ExoIII and endonuclease IV (EndoIV). This subfamily belongs to the ExoIII family; the EndoIV family belongs to a different superfamily.	4.56964e-124
NZ_CP016080.1\|WP_019863671.1\|290466_290784_-\|glycine-zipper-2TM-domain-containing-protein	gnl\|CDD\|274783	TIGR03789, pdsO, proteobacterial sortase system peptidoglycan-associated protein. A newly defined histidine kinase (TIGR03785) and response regulator (TIGR03787) gene pair occurs exclusively in Proteobacteria, mostly of marine origin, nearly all of which contain a subfamily 6 sortase (TIGR03784) and its single dedicated target protein (TIGR03788) adjacent to to the sortase. This protein family shows up in only in those species with the histidine kinase/response regulator gene pair, and often adjacent to that pair. It belongs to the pfam00691 domain family, which is the peptidoglycan-associated region of flagellar motor protein MotB, OmpA (whose N-terminal region forms an outer membrane beta barrel), and peptidoglycan-associated lipoprotein Pal. Its function is unknown. We assign the gene symbol pdsO, for Proteobacterial Dedicated Sortase system OmpA family protein. [Protein fate, Protein and peptide secretion and trafficking].	0.000111176
NZ_CP016080.1\|WP_019863692.1\|275179_276337_+\|TrbI/VirB10-family-protein	gnl\|CDD\|225499	COG2948, VirB10, Type IV secretory pathway, VirB10 components [Intracellular trafficking and secretion].	7.79367e-88
NZ_CP016080.1\|WP_080643894.1\|294209_295106_+\|c-type-cytochrome	gnl\|CDD\|226005	COG3474, COG3474, Cytochrome c2 [Energy production and conversion].	4.41702e-34
NZ_CP016080.1\|WP_027047858.1\|285076_285280_+\|CsbD-family-protein	gnl\|CDD\|225777	COG3237, COG3237, Uncharacterized protein conserved in bacteria [Function unknown].	6.66033e-20
NZ_CP016080.1\|WP_027047857.1\|291091_292651_+\|recombinase-family-protein	gnl\|CDD\|214861	smart00857, Resolvase, Resolvase, N terminal domain. The N-terminal domain of the resolvase family contains the active site and the dimer interface. The extended arm at the C-terminus of this domain connects to the C-terminal helix-turn-helix domain of resolvase.	4.11779e-35
NZ_CP016080.1\|WP_019863669.1\|292647_293496_+\|hypothetical-protein	gnl\|CDD\|311449	pfam07506, RepB, RepB plasmid partitioning protein. This family includes proteins with sequence similarity to the RepB partitioning protein of the large Ti (tumor-inducing) plasmids of Agrobacterium tumefaciens.	9.38861e-55
NZ_CP016080.1\|WP_019863687.1\|277894_278143_+\|DUF768-domain-containing-protein	gnl\|CDD\|283283	pfam05589, DUF768, Protein of unknown function (DUF768). This family consists of several uncharacterized hypothetical proteins from Rhizobium loti.	2.87631e-15
NZ_CP016080.1\|WP_019863684.1\|279849_280449_-\|hypothetical-protein	gnl\|CDD\|377558	pfam05818, TraT, Enterobacterial TraT complement resistance protein. The traT gene is one of the F factor transfer genes and encodes an outer membrane protein which is involved in interactions between an Escherichia coli and its surroundings.	0.00107618
NZ_CP016080.1\|WP_032920931.1\|286154_286562_-\|DUF427-domain-containing-protein	gnl\|CDD\|225220	COG2343, COG2343, Uncharacterized protein conserved in bacteria [Function unknown].	8.66044e-44
NZ_CP016080.1\|WP_027047859.1\|280470_281214_-\|DUF4142-domain-containing-protein	gnl\|CDD\|379301	pfam13628, DUF4142, Domain of unknown function (DUF4142). This is a bacterial family of unknown function.	4.09522e-35
NZ_CP016080.1\|WP_032921586.1\|289843_290473_+\|methyltransferase-domain-containing-protein	gnl\|CDD\|372616	pfam13489, Methyltransf_23, Methyltransferase domain. This family appears to be a methyltransferase domain.	2.18063e-07
NZ_CP016080.1\|WP_019863674.1\|287188_288184_+\|murein-L,D-transpeptidase	gnl\|CDD\|224294	COG1376, ErfK, Uncharacterized protein conserved in bacteria [Function unknown].	2.32817e-37

>NZ_CP016080.1|WP_019863681.1|282254_282644_-|hypothetical-protein
MVAGYVEMVLFEQSLCDGDGMHRPFADRVADAAAKTSGTVLFDVRIDGDTQVQRMAAIGYDDAGTAIILMEKTGDLRCASVNGETAVLVAELAAWESSPLSEHARVDFRGTAAMLLAKVRSSGHFGRSI
>NZ_CP016080.1|WP_027047859.1|280470_281214_-|DUF4142-domain-containing-protein
MRNTFRLTSLSLATSLGFALPSFAAETAQDFVTKAAIGGMFEVQSSKVVQDKLQDQALKDFAQKMISDHGAANAKLESIAGEQKLQVPADLDASHNSDLDKLKSASAPVDKPYAVMQKAAHADAVSLFEAYAKDGDNAALKSFASETLPTLKMHRDMIQKAETKAPANESTTPAVSTSGVNNPAAPVPGANSFTEDQAKSAIQKAGYTDVSALKKDDKGIWRGTASKDGKSTPVALDYQGNVVADTQ
>NZ_CP016080.1|WP_019863684.1|279849_280449_-|hypothetical-protein
MQTVTGLFDDYDDANDAVGELVATGVPRDEISLVANNATGWYKADDAEAGEDAATGAGLGAVVGGAGGLATGLGLMAIPGLGPVVAAGWLAATAVGAVGGALVGGAAGGIIGAMTKAGVPENDAHVYAEGVRRGGTMVTARVEDSLVPNAEQILKQYNSVDIADRRSAYEAAGWTGFDPAADVYPDDDLRRGTRARSLM
>NZ_CP016080.1|WP_019863685.1|279000_279792_+|exodeoxyribonuclease-III
MTRVATFNVNGVNGRLPVLLKWLSETGADIVCLQELKTSDEKFPEKAIEAVGYGAIWHGQKTYNGVAILGRGQVPLERRRGLPGDPDDTHSRYLEAEVDGLVVGCLYLPNGNPAPGPKFEYKLRWFDRLIAYGQLLLEENVPTVLCGDYNVVPTEIDAVVPHRWVGDAVYFPETRKAYADMLAGGWVDAVRTIHPEKGIYTYWNFTCRGGYDRSSGLRMDHLLVSPSLSGRIHSAGVDVEVRGWEKPSDHAPAWVDLSGREPL
>NZ_CP016080.1|WP_019863686.1|278773_278956_-|hypothetical-protein
MTSPHDIDKAAVKIIPIFDYVFVGDALRLCFDREPFGEFRYVRITHAPAVQQIVSLHPQV
>NZ_CP016080.1|WP_155249183.1|278591_278750_+|hypothetical-protein
MRMHLFRDEPIHKPAAEVRADGLKRIEIDADSDSLCRIVVNAMGNFDVGART
>NZ_CP016080.1|WP_019863687.1|277894_278143_+|DUF768-domain-containing-protein
MSGRGAKFLRQWLMNNMSGIVGANVVTLAEATQKLLSDAKAIGIRSEELKLDNGSTYEAVLDAIVQHRQGQMSREISRRTPT
>NZ_CP016080.1|WP_051112942.1|277087_277402_+|hypothetical-protein
MNMVLVEILLPLSDNFGTPFPTTLYRDVQERLAEKFGGATAYMRSPANGLWHEGGGGSHHDDVVLFEVMAETLEATYWQTVKGKLAEEFRQNDIVVRATNITRL
>NZ_CP016080.1|WP_027047861.1|276338_276563_+|DUF2274-domain-containing-protein
MAKLKLGPIADDKPVKVTVELPAPLHRDLSRYAEILGRDAGQPSTDPLRLIVPMLERFIATDRGFARAKQERKG
>NZ_CP016080.1|WP_019863692.1|275179_276337_+|TrbI/VirB10-family-protein
MKENEIPAAPMRLRADPPRVTRLSRKVLAGIGLGASLGVGGALIYALQTGETRRHGDELYSTSNRQPADGLASLPRDYTGPVLGPPLPGDLGRPMLDAQNKGQPVVPPTIATPMVDEAEQRRRTEEEAARTSRVFFQTGQSTAAMAETPPGGTSPPNLGGPDLAGQIGQSTTQDRQLGFLNAAADRRTVAPDRVTPAASPYVLQAGAVIPAALITGIRSDLPGQITAQVTENVYDSPTGRSLLIPQGTRVIGQYDNGVGFGQRRVLLVWSRLVFPNGRSIVLERQPGTDTQGYAGLEDGVDYHWADLFKAAALTTILSVGAEAGSSGQESDTVRALRGGASDSLSQVGQQIVQRQLNIAPTLTIRPGFDVRVVVTRDLVLEPYGD
>NZ_CP016080.1|WP_027047858.1|285076_285280_+|CsbD-family-protein
MDWNRVEGNWKQVKGKVKEQWGKLTDDDLDRIAGKRDQLEGKIQERYGIERDRARRDIDAWYTRQDW
>NZ_CP016080.1|WP_032920931.1|286154_286562_-|DUF427-domain-containing-protein
MQTSPASPEYPPTAPAILPFHGTVTVRFSDAIVASSECAKMLYEDGRDPVFYIPFEDIYFELFEKTNATSESAWGTAGYWRVHAAGASADNFMWAYETPETAALAIARHGAFDPHKARIDADPAEDKQHTPHLPE
>NZ_CP016080.1|WP_020629183.1|286743_286890_-|hypothetical-protein
MNRTIRGAILKTIRGAILKRSYDDESQASSRHVVAALQLRLHEPHLEV
>NZ_CP016080.1|WP_019863674.1|287188_288184_+|murein-L,D-transpeptidase
MVRLLLVAAAALALTCDGTAAAKLDSATVNQAQFSPERSKGFSPVILKAQILLDRARFSPGMIEGRFSDNAAKAIRAFQTANGLSSDGKLTPETWDRLTATSTNPVVVSYELTRKDVSGPFTKRIPARMEKMARLRTLGYHNVTEKLAERFHISEQLLRRLNPGIGFMKAGTKLLVPDIDRGESPARIAGIEVDKGARLVRVLDPSGKWLAVFPASIGSAEKPAPSGEAEVKRVARNPTYHYDPNFAFKGVKAKRPFTIAAGPNNPVGSVWIDLSIESYGIHGTPEPGKIGATFSHGCIRLTNWDAEDLASMVQKGTKVSFKDETASAGGE
>NZ_CP016080.1|WP_032921586.1|289843_290473_+|methyltransferase-domain-containing-protein
MTTSLAGTLKNRGKQMAKRLLGYDSRNWLRIRQIEAFTVFLEAGNRKASDVIEISPGWNRYWRAMCPNYRSVDFPAFDICKDRTEEQYSIVIADQVLEHVRRPLAAAQNIHAMTRPGGWAMVATPFLFRVHARPHDYNRWTPAGLKQLMVEGGFPEANVKVHGWGNKACARAHIGGPVRAYGLWRDLNNDEEYPLMVWAFAKKEPAASQ
>NZ_CP016080.1|WP_019863671.1|290466_290784_-|glycine-zipper-2TM-domain-containing-protein
MTFHKAIAALLLTAALAGCQSQTEGQQRATTGALIGGAGGALVGQAIGGNTKSTVIGAASGALLGAVVGSATTPQRRGEEMCRYQDRYGRIYTAPCDDRYYNGNY
>NZ_CP016080.1|WP_027047857.1|291091_292651_+|recombinase-family-protein
MDRATTPPEFERRRARAAQYLRMSTERQIYSIDNQRDAIRNYAEVMGYDIVATYEDPGRSGLSILGRPGLKRLIEDIESRRADFETVVVYDVSRWGRFQNTDESASYEYRCQRAGVRIEFCAELFVNDGSIGSDVLKAIKRSMAAEYSRMLSNRVFAGQSRIVKLGFSGGGPAGYGLRRLLVDGSGNPKAILHRDERKGLASDRVVLVPGPENEVSTVRWIFNQFVKKGKTAVEIASALNARGLVTEFGRPWTGACVGTILASEKYVGNIVWNRISHRLLQNRLRNPPSAVVRADNVIEPLVTRALFDRAQAIRRARTYLRPDEELLADLTKLLKERGRLSSPIIDAAPGCHSASIYAHRFGSMNAAYQLIGYDGSANYRKLDIRRRLIQIRQQTIENLMSDIDGVGGSALYDPQTKIMRVNDEFSVAIWTAQYRMNVTGFPRWPFWKRGLIGPEVTILIRMESDNQTVRDFLIAPAHEAQSALHMLKADNGVRLDAFLFASLDPVVEVARREPMPANI
>NZ_CP016080.1|WP_019863669.1|292647_293496_+|hypothetical-protein
MRTTKAGLRDFVTNNRHAIRLTVDSRAPMNPLRVSGLLKTYRRQVDNMQEFIREADAVKHQMESVVDAFRHVLRIAAFQGLLQSNGFATPPSILMQNSPEAGVKAGIGEDRQISLPRVDEPLVEGICLEALDMLNDFGAPLKIFGLLREVVPGRQVEIVRLMLAMNRVEFRVARLLIELTPRSQLTNPLARRKRYEGISPAQMAAMEADIAEVSHDYLSAASTHGSEMLNLIAATSYFDRLLNNPKLVRYLARNFARQLEVFQNLLDFREARYKKHPPQAGS
>NZ_CP016080.1|WP_019863667.1|293513_293975_-|hypothetical-protein
MVDTAEDNFRIEVWDREEKTHLETICRTPDAVVSQAAWHAAIRRRPGMLLIHYNSRHVMEKIITPGEVKVPPQTIIDGSIHAGLDVALGDLRSWHTLCAWCTTCSHHAEVKPEGLIRRYGKEALFSSVERALFCTSCKKGGPVRMEIHSMPRN
>NZ_CP016080.1|WP_080643894.1|294209_295106_+|c-type-cytochrome
MTKRRVWLKGASWILSLFIIPAQAGSLGDLVKSGDLVGVTSALDKGAAVNEVDGVTALYIACEGGNVEIAKLLIDRGADVNLPVSWQRTPLYAANKGGHADIVKLLLDNGADPNQLAKSQTPLHVAAENGCLPCVVHLVDAGAEVNALTSNGSPPIHLAKLAGHDDVVAYLRSHGAGRPAIAPIAPRLASANAESGKELFGKTCGTCHLVAPGIKNPKPNLWGIVGRRKASQGDVEYSASLKDAGGDWTFEELNLFISNPALTLPGTDMLFPGLQDEKQRADLIAYLRTLSETPSPLP

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_CP016080_1	1.2\|283738\|22\|NZ_CP016080\|CRISPRCasFinder	283738-283759	22	NZ_CP016080.1	283774-283795	0	1.0

1. spacer 1.2|283738|22|NZ_CP016080|CRISPRCasFinder matches to position: 283774-283795, mismatch: 0, identity: 1.0

actaggagtactaggagtacta	CRISPR spacer
actaggagtactaggagtacta	Protospacer
**********************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP016080_1	1.1\|283684\|22\|NZ_CP016080\|CRISPRCasFinder	283684-283705	22	NZ_CP016080	Mesorhizobium loti NZP2037 plasmid pML2037, complete sequence	283684-283705	0	1.0
NZ_CP016080_1	1.2\|283738\|22\|NZ_CP016080\|CRISPRCasFinder	283738-283759	22	NZ_CP016080	Mesorhizobium loti NZP2037 plasmid pML2037, complete sequence	283720-283741	0	1.0
NZ_CP016080_1	1.2\|283738\|22\|NZ_CP016080\|CRISPRCasFinder	283738-283759	22	NZ_CP016080	Mesorhizobium loti NZP2037 plasmid pML2037, complete sequence	283729-283750	0	1.0
NZ_CP016080_1	1.2\|283738\|22\|NZ_CP016080\|CRISPRCasFinder	283738-283759	22	NZ_CP016080	Mesorhizobium loti NZP2037 plasmid pML2037, complete sequence	283738-283759	0	1.0
NZ_CP016080_1	1.2\|283738\|22\|NZ_CP016080\|CRISPRCasFinder	283738-283759	22	NZ_CP016080	Mesorhizobium loti NZP2037 plasmid pML2037, complete sequence	283747-283768	0	1.0
NZ_CP016080_1	1.2\|283738\|22\|NZ_CP016080\|CRISPRCasFinder	283738-283759	22	NZ_CP016080	Mesorhizobium loti NZP2037 plasmid pML2037, complete sequence	283756-283777	0	1.0
NZ_CP016080_1	1.2\|283738\|22\|NZ_CP016080\|CRISPRCasFinder	283738-283759	22	NZ_CP016080	Mesorhizobium loti NZP2037 plasmid pML2037, complete sequence	283765-283786	0	1.0
NZ_CP016080_1	1.2\|283738\|22\|NZ_CP016080\|CRISPRCasFinder	283738-283759	22	NZ_CP016080	Mesorhizobium loti NZP2037 plasmid pML2037, complete sequence	283774-283795	0	1.0
NZ_CP016080_1	1.2\|283738\|22\|NZ_CP016080\|CRISPRCasFinder	283738-283759	22	NZ_CP016080	Mesorhizobium loti NZP2037 plasmid pML2037, complete sequence	283711-283732	1	0.955

1. spacer 1.1|283684|22|NZ_CP016080|CRISPRCasFinder matches to NZ_CP016080 (Mesorhizobium loti NZP2037 plasmid pML2037, complete sequence) position: , mismatch: 0, identity: 1.0

cccttgggtaccggagatattg	CRISPR spacer
cccttgggtaccggagatattg	Protospacer
**********************

2. spacer 1.2|283738|22|NZ_CP016080|CRISPRCasFinder matches to NZ_CP016080 (Mesorhizobium loti NZP2037 plasmid pML2037, complete sequence) position: , mismatch: 0, identity: 1.0

actaggagtactaggagtacta	CRISPR spacer
actaggagtactaggagtacta	Protospacer
**********************

3. spacer 1.2|283738|22|NZ_CP016080|CRISPRCasFinder matches to NZ_CP016080 (Mesorhizobium loti NZP2037 plasmid pML2037, complete sequence) position: , mismatch: 0, identity: 1.0

actaggagtactaggagtacta	CRISPR spacer
actaggagtactaggagtacta	Protospacer
**********************

4. spacer 1.2|283738|22|NZ_CP016080|CRISPRCasFinder matches to NZ_CP016080 (Mesorhizobium loti NZP2037 plasmid pML2037, complete sequence) position: , mismatch: 0, identity: 1.0

actaggagtactaggagtacta	CRISPR spacer
actaggagtactaggagtacta	Protospacer
**********************

5. spacer 1.2|283738|22|NZ_CP016080|CRISPRCasFinder matches to NZ_CP016080 (Mesorhizobium loti NZP2037 plasmid pML2037, complete sequence) position: , mismatch: 0, identity: 1.0

actaggagtactaggagtacta	CRISPR spacer
actaggagtactaggagtacta	Protospacer
**********************

6. spacer 1.2|283738|22|NZ_CP016080|CRISPRCasFinder matches to NZ_CP016080 (Mesorhizobium loti NZP2037 plasmid pML2037, complete sequence) position: , mismatch: 0, identity: 1.0

actaggagtactaggagtacta	CRISPR spacer
actaggagtactaggagtacta	Protospacer
**********************

7. spacer 1.2|283738|22|NZ_CP016080|CRISPRCasFinder matches to NZ_CP016080 (Mesorhizobium loti NZP2037 plasmid pML2037, complete sequence) position: , mismatch: 0, identity: 1.0

actaggagtactaggagtacta	CRISPR spacer
actaggagtactaggagtacta	Protospacer
**********************

8. spacer 1.2|283738|22|NZ_CP016080|CRISPRCasFinder matches to NZ_CP016080 (Mesorhizobium loti NZP2037 plasmid pML2037, complete sequence) position: , mismatch: 0, identity: 1.0

actaggagtactaggagtacta	CRISPR spacer
actaggagtactaggagtacta	Protospacer
**********************

9. spacer 1.2|283738|22|NZ_CP016080|CRISPRCasFinder matches to NZ_CP016080 (Mesorhizobium loti NZP2037 plasmid pML2037, complete sequence) position: , mismatch: 1, identity: 0.955

actaggagtactaggagtacta	CRISPR spacer
gctaggagtactaggagtacta	Protospacer
.*********************

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP016079_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP016079_1

3636577-3636990

Orphan

Consensus_repeat	Method
GCCTTGCCCTGGGCCTGC	CRT

11 spacers

The CRISPR arrays of NZ_CP016079_1

>merge|NZ_CP016079|1|3636577-3636990|CRT
GCCTTGCCCTGGGCCTGCTGATCGGTGGTAGCATTTGCCTTGCCCTCGGCCTGCTGATCCGTCTGGACCTTGGCCTTGCCCTGGGCCTGCTTATCGGTGATAGCATTCGCCTTGCCCTGGGCCTGCTGGTCCGTCTGGACCTTAGCCTTGCCCTGGGCCTGCTGATCGGTGGTCGCGTTTGCCTTGCCCTCGGCCTGCTGGTCCGTCTGGACCTTGGCTTTGCCCTGAGCCTGCTGATCCGTCTGGACCTTGGCCTTGCCCTGGGCCTGCTGATCGGTGGTTGCATTCGCCTTGCCCTGGGCCTGCTGATCCGTCTGGACCTTGGCTTTGCCCTGGGCCTGCTCGTCGGTCTTGAGCTTGGGCTTGCCCTGGGCCTGTTGGTCCGTCTGGACCTTGGCCTTGCCCTGGGCCTGC

>NZ_CP016079|1|1|3636577-3636990|CRT
GCCTTGCCCTGGGCCTGC	TGATCGGTGGTAGCATTT
GCCTTGCCCTCGGCCTGC	TGATCCGTCTGGACCTTG
GCCTTGCCCTGGGCCTGC	TTATCGGTGATAGCATTC
GCCTTGCCCTGGGCCTGC	TGGTCCGTCTGGACCTTA
GCCTTGCCCTGGGCCTGC	TGATCGGTGGTCGCGTTT
GCCTTGCCCTCGGCCTGC	TGGTCCGTCTGGACCTTG
GCTTTGCCCTGAGCCTGC	TGATCCGTCTGGACCTTG
GCCTTGCCCTGGGCCTGC	TGATCGGTGGTTGCATTC
GCCTTGCCCTGGGCCTGC	TGATCCGTCTGGACCTTG
GCTTTGCCCTGGGCCTGC	TCGTCGGTCTTGAGCTTG
GGCTTGCCCTGGGCCTGT	TGGTCCGTCTGGACCTTG
GCCTTGCCCTGGGCCTGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP016079.1\|WP_155249116.1\|3627182_3628667_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP016079.1\|WP_027047054.1\|3642678_3642975_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP016079.1\|WP_019859303.1\|3644005_3644542_+\|MgtC/SapB-family-protein	unknown	unknown	gnl\|CDD\|224204
NZ_CP016079.1\|WP_019859310.1\|3639171_3639411_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP016079.1\|WP_032921167.1\|3628946_3629840_+\|aminoglycoside-phosphotransferase-family-protein	unknown	unknown	gnl\|CDD\|270704
NZ_CP016079.1\|WP_019859308.1\|3640830_3641064_-\|DUF378-domain-containing-protein	unknown	unknown	gnl\|CDD\|225066
NZ_CP016079.1\|WP_027047055.1\|3638595_3638898_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP016079.1\|WP_019859314.1\|3635895_3636126_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP016079.1\|WP_019859309.1\|3639489_3640647_+\|PAS-domain-S-box-protein	unknown	unknown	gnl\|CDD\|226434
NZ_CP016079.1\|WP_019859312.1\|3637404_3638409_-\|aldo/keto-reductase	unknown	unknown	gnl\|CDD\|381302
NZ_CP016079.1\|WP_019859323.1\|3623821_3624895_+\|D-alanine--D-alanine-ligase	unknown	unknown	gnl\|CDD\|234993
NZ_CP016079.1\|WP_027047057.1\|3632178_3632634_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP016079.1\|WP_019859317.1\|3632967_3633222_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP016079.1\|WP_027047056.1\|3633311_3635459_-\|peptidase	unknown	unknown	gnl\|CDD\|226700
NZ_CP016079.1\|WP_019859307.1\|3641183_3641429_-\|DUF982-domain-containing-protein	unknown	unknown	gnl\|CDD\|368772
NZ_CP016079.1\|WP_019859322.1\|3625104_3627081_+\|AI-2E-family-transporter	unknown	unknown	gnl\|CDD\|223701
NZ_CP016079.1\|WP_027047053.1\|3644538_3645441_-\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|366166
NZ_CP016079.1\|WP_019859319.1\|3629965_3632182_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|340831
NZ_CP016079.1\|WP_019859315.1\|3635554_3635719_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP016079.1\|WP_019859304.1\|3643366_3643849_-\|pyridoxamine-5'-phosphate-oxidase-family-protein	unknown	unknown	gnl\|CDD\|379804

Protein	Function_ID	Function_description	E-value
NZ_CP016079.1\|WP_019859303.1\|3644005_3644542_+\|MgtC/SapB-family-protein	gnl\|CDD\|224204	COG1285, SapB, Uncharacterized membrane protein [Function unknown].	1.40569e-47
NZ_CP016079.1\|WP_019859312.1\|3637404_3638409_-\|aldo/keto-reductase	gnl\|CDD\|381302	cd19076, AKR_AKR13A_13D, AKR13A and AKR13D families of aldo-keto reductase (AKR). Schizosaccharomyces pombe aldo-keto reductase YakC is a founding member of aldo-keto reductase family 13 member A1 (AKR13A1). It catalyzes the reversible reduction of ketones to the respective alcohols using NADP(+) as a hydride donor. Rauvolfia serpentina PR is a founding member of aldo-keto reductase family 13 member D1 (AKR13D1). It catalyzes the NADPH-dependent reduction of the aldehyde perakine to yield the alcohol raucaffrinoline in the biosynthetic pathway of ajmaline in Rauvolfia, a key step in indole alkaloid biosynthesis. This family also includes Arabidopsis thaliana aldo-keto reductases, ALKR1-6.	0
NZ_CP016079.1\|WP_019859304.1\|3643366_3643849_-\|pyridoxamine-5'-phosphate-oxidase-family-protein	gnl\|CDD\|379804	pfam16242, Pyrid_ox_like, Pyridoxamine 5'-phosphate oxidase like. This domain, approximately 140 residues in length, is mainly found in general stress proteins in various Xanthomonas species. It is composed of a six-stranded antiparallel beta-barrel flanked by five alpha-helices and can bind to FMN and FAD, suggesting that it may help the bacteria to react against the oxidative stress induced by the defense mechanisms of the plant.	4.69498e-53
NZ_CP016079.1\|WP_019859308.1\|3640830_3641064_-\|DUF378-domain-containing-protein	gnl\|CDD\|225066	COG2155, COG2155, Uncharacterized conserved protein [Function unknown].	4.15717e-24
NZ_CP016079.1\|WP_019859309.1\|3639489_3640647_+\|PAS-domain-S-box-protein	gnl\|CDD\|226434	COG3920, COG3920, Signal transduction histidine kinase [Signal transduction mechanisms].	1.09327e-48
NZ_CP016079.1\|WP_019859323.1\|3623821_3624895_+\|D-alanine--D-alanine-ligase	gnl\|CDD\|234993	PRK01966, ddl, D-alanine--D-alanine ligase.	5.1331e-164
NZ_CP016079.1\|WP_032921167.1\|3628946_3629840_+\|aminoglycoside-phosphotransferase-family-protein	gnl\|CDD\|270704	cd05155, APH_ChoK_like_1, Uncharacterized bacterial proteins with similarity to Aminoglycoside 3'-phosphotransferase and Choline kinase. This subfamily is composed of uncharacterized bacterial proteins with similarity to APH and ChoK. Other APH/ChoK-like proteins include ethanolamine kinase (ETNK), macrolide 2'-phosphotransferase (MPH2'), an unusual homoserine kinase, and uncharacterized proteins with similarity to the N-terminal domain of acyl-CoA dehydrogenase 10 (ACAD10). These proteins catalyze the transfer of the gamma-phosphoryl group from ATP (or CTP) to small molecule substrates, such as aminoglycosides, macrolides, choline, ethanolamine, and homoserine. Phosphorylation of the antibiotics, aminoglycosides, and macrolides leads to their inactivation and to bacterial antibiotic resistance. Phosphorylation of choline, ethanolamine, and homoserine serves as precursors to the synthesis of important biological compounds, such as the major phospholipids, phosphatidylcholine and phosphatidylethanolamine and the amino acids, threonine, methionine, and isoleucine. The APH/ChoK-like subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K).	4.37853e-84
NZ_CP016079.1\|WP_027047056.1\|3633311_3635459_-\|peptidase	gnl\|CDD\|226700	COG4249, COG4249, Uncharacterized protein containing caspase domain [General function prediction only].	1.61042e-106
NZ_CP016079.1\|WP_019859322.1\|3625104_3627081_+\|AI-2E-family-transporter	gnl\|CDD\|223701	COG0628, yhhT, Predicted permease, member of the PurR regulon [General function prediction only].	5.83706e-71
NZ_CP016079.1\|WP_019859307.1\|3641183_3641429_-\|DUF982-domain-containing-protein	gnl\|CDD\|368772	pfam06169, DUF982, Protein of unknown function (DUF982). This family consists of several hypothetical proteins from Rhizobium meliloti, Rhizobium loti and Agrobacterium tumefaciens. The function of this family is unknown. Structural modelling suggests this domain may bind nucleic acids.	1.05001e-20
NZ_CP016079.1\|WP_027047053.1\|3644538_3645441_-\|alpha/beta-hydrolase	gnl\|CDD\|366166	pfam00561, Abhydrolase_1, alpha/beta hydrolase fold. This catalytic domain is found in a very wide range of enzymes.	1.7436e-24
NZ_CP016079.1\|WP_019859319.1\|3629965_3632182_-\|hypothetical-protein	gnl\|CDD\|340831	cd03801, GT4_PimA-like, phosphatidyl-myo-inositol mannosyltransferase. This family is most closely related to the GT4 family of glycosyltransferases and named after PimA in Propionibacterium freudenreichii, which is involved in the biosynthesis of phosphatidyl-myo-inositol mannosides (PIM) which are early precursors in the biosynthesis of lipomannans (LM) and lipoarabinomannans (LAM), and catalyzes the addition of a mannosyl residue from GDP-D-mannose (GDP-Man) to the position 2 of the carrier lipid phosphatidyl-myo-inositol (PI) to generate a phosphatidyl-myo-inositol bearing an alpha-1,2-linked mannose residue (PIM1). Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility. The members of this family are found mainly in certain bacteria and archaea.	1.22795e-10

>NZ_CP016079.1|WP_019859314.1|3635895_3636126_+|hypothetical-protein
MRSFELVDLLYVVEACKHDRVVGNFVSMAEGVEELRVLTGDFVSPDDVVANALSTVALARGCSVLFDEQAGAEIQL
>NZ_CP016079.1|WP_019859315.1|3635554_3635719_-|hypothetical-protein
MRDKIRADVMGERLPSIVKLTSEYRNIFGPARLADISADGFFPPDLKPSLYMRF
>NZ_CP016079.1|WP_027047056.1|3633311_3635459_-|peptidase
MLRKSFSSYLRQGLLLAFLAAFSTLWLAQAHAERRAAIVVGNSEYPFAPLTNPRNDAKLIANTLTELKFDVLLFYDVKKSAEKDLNDAIRAHLIGADMAVFYYAGHALQYNGQNLLLPVDTRISSAKDVAADAMRLNDLIDIVKNDPVGVKVFILDACRNNPVAKEKGLQQGLAYTEAGSGQVLVAFATSAGEVAYDGTGINSPYSSALANALLMPNLDVYDTFRTVRGDVRQATAGSQIPWITGSIETKFVFRQGDAGKQVAQAEHAAEANGGLTIDEVLWSFISDSQNPEDFERFVKVFPNSRYAAEATEKSRFKVAALTKRGLYVNGNLVSSSIAAVAPVEASDKALSEEFVFQQAGERAVSETFRIWPSNLPDTQRGMRTMVTDCDLYAADPNDPQRAVPGVTNGLVNVRDALRACAFALAADINNPRLQFQFGRVLEIARRYSWAEHFYELAGNQQYSAALINMGYMARVGMGREIDYGRAFDFYVRAAALGNLRARTDIGSAYIAGQGVPKLPQEGVLWYRLAASSGWANAITALGDAYRLGTGVKQDYVQAASLYSAAADTGQIDAMANLGQAYLAGEGVKKDVPRGLELLQRANDMGNRYAPYFMAQLYLKGDRKLAADPRRALTLLELSANRGNEYAYVRLAWGHRDGLFTGKPDLRRAYFDASLAARLRADQGEQAKAEIAKKIDPATRKEIDGEVELYIKQNGP
>NZ_CP016079.1|WP_019859317.1|3632967_3633222_+|hypothetical-protein
MARLLLAKMASAAALVSTSVMLSGCWTIAGRPILCDFGFSLKDGRCAKVTKVTKVTKVTKVTKVTKVSTPQPDKSSSKRGDSHY
>NZ_CP016079.1|WP_027047057.1|3632178_3632634_-|hypothetical-protein
MRKLKELFLRKDKQDPGDEGPGNIYVYKSKEEISTIIVTTLGVDPDLLGEIIATTKRKLSGKSDRLIYLTDNSDFTIFRRHGVIFEYLPPLVEQRLHAADMPWQAYLREHWGLLLAKWRPRRVLAYGTTIDSFLAAAPTASVRNAPDMPRS
>NZ_CP016079.1|WP_019859319.1|3629965_3632182_-|hypothetical-protein
MRLDILFVADVRFEGGTSTALAVEIRAAARAGFKTGLLAVKGPLLRNPYPMHPDLRALIDGGATERIDPDTKVDADLVLVHHPAIMSNRFTRRTGIRTERMVMVLHHPMVDRRGKLQYDLARIVSNCRWAFGVKVWLATVSAVVRDALPRHLPAGAELLPENWTNLIDLDDWPRRPDGPPHNPVIIGRHARPDKLKWPSRPADALRIYPADAARYSIRILGGGPFLRELYGPLPANWEILPFAWTGIAGFLQGLDFYVYYHSDSWSEAFGRTILEALAVGLVTILPAHFQPLFGDAAVYAAPRDVEGVIGKFITDADAYARQSALAREFVARHHSAELFPQRLERLFNISKPRDAAAVRASTIQPLPIRQVLFASSNGIGMGHLAQQLAVAQRLPRGLKPVFATMSYAMKIAAEEGYHAHFLTHHRGIDAAPEDWNDVLAEELFDLISHLRPAVFAYDATAVFDGVVAALAMDPNLFSIWVRRPMWRESHRPFLEMADAFDAVIEPGELADEFDHGPTSEVRDKVLLVPPVLLLEPNQRLDRAAARNFLEISDGMTVVALQLGSGSNFDMRGVRNGVLKAVLDRPDTLVLDIRSPIRADFESDEPVGPRHRIVELFPSFNYSRAFDAAVVAPGYNTFHENILGAVPTLFVPNESDEMDLQLNRARWAELGGFGLLMRRDHDLPHVDRFIEQLLDPTEREGMAARCEAVPWTNGADVIANYIEDHARMVRTDWDITKDS
>NZ_CP016079.1|WP_032921167.1|3628946_3629840_+|aminoglycoside-phosphotransferase-family-protein
MHDDQVDIDIDIARQMIRDQFPQYRHEDITSIGSSGTVNAIFRIGSKSAARFPLRAMKPTECADMLRSEAAAMVEIGQHCLFPTPQPIGLGQPGPRYPMPWAVQTWIEGEVATSNGLSGSAIFALDLASLVASLRQADTRGRRFDGQGRGGHLPDHDDWMAVCFENSEGLLDVARLRDLWARLRELPAAEPVVMSHKDLIPPNLLVQGERLVGVLDGGSFGPADPSLDLAVAWHLLDRERRATFRSGLQVEDLLWKRGAAWAFQQAMGLVWYYRRTNPAMSALGRSTLSRILDNPDI
>NZ_CP016079.1|WP_155249116.1|3627182_3628667_-|hypothetical-protein
MPNEQTTIDPGAAETQLGPSVSVQVNPEDSVPFRPEPVFISLGLKRDVFVGFSGGNAAPNPDPMGIPPVDLKTENGLLKAFLLLGFEPGPDTTPFGFSMPAIFRASAAFRETVDLPGLNVPMPPAVIGQQPPVIKPVMIQNYMALQANFFQMSLAPLQAKLREARVPFTQGGITAPEDLRPQLFLVEQYQLASFRGDLARDDLVDSISLSPGGSMTYKVIIKKRTSTSNELTSTVLDSQDREAKDNFNKQLKDTADKRSGTNNYDYGFEGSFHGEASVEIGGGSADARVHARGSTNEVRQDFAESTTSAIDSQVSETNRSRKQSIETGREDTQTDEQTESVREKTAHNPTAQPVNVGIFLLKEEFVSVLSLVDVEIAYRNGDANQDRQVPLRKLGELLDAVIERPEDRTEIAATIKALLEGIADYQDETRSIVKPDPSSPLGFSRDAQLRSEYRLLKSDGTLRRTFSVKGIPIRGCERSLRRPNITVELPIAGI
>NZ_CP016079.1|WP_019859322.1|3625104_3627081_+|AI-2E-family-transporter
MAANRRNGTASEAHGLDDILAAAAPHPRTALPNVATTVTTVAALYFGREVFLPIAIALLLTFALAPFVSALKRVGIPRIAAVIASVLSAFAALALFSFVVATQVSELAQNIPVYQTNILAKIRSLKETGVGGGIIARLSSVVERVGQEIDRQDATLPAATADKPPREPVPVEIVARERPLEVLQNIVGPLISPLGSAGLIIVVVIFMLLEREDLRDRFIRLVGYGDLHRTTEALQDAAKRVGRYLLMQLVVNIVYAIPIAIGLWILGIPNALLWGMLALALRFVPYIGPAIGMLLPLFLALAVAPGWSLVLWTAALFVVMELVTGNVVEPWLYGSRTGLSPLAIIVAAIFWTWLWGPLGLVLSTPLTVCLVVLGRHVPQFEFLDVLFGNEPVLEPHARLYQRLLAGDPDEATDHAEEMLEEKYLVEFYDKVAIPALLLGERDRVRGVMGDLQRRQVAASALALVANLEDDAKEEAAEDESPEAGEPGDAADEDEAELPDGTGMSLLCAGGRGELDDAAAAMLAQVLEVQGATASKAGFADMEPASIRRLELETIDTVVVGFLNRDSVKHARFLVRRLKRAKAALRVGIVFWSEAGNGDKEAADKLAQDINADFVAHGMVDAVTGALSNEPPVALKLVAKRRMRRPRAAPRKVPAAAAS
>NZ_CP016079.1|WP_019859323.1|3623821_3624895_+|D-alanine--D-alanine-ligase
MTEKTRVAILYGGRSAEHDVSRLSAANVLKAIDRTRYQVVPIAISRDGRWRLQPSSEAGADGAGASVSEDGVEVALLPGGKGRLVALTESGEQPDPVDVVFPVLHGPFGEDGSVQGYAEVADVAYVGCGVLASAAAMDKDVAKRLLREAGLAVARSVTVLRGEVGPFQEIAGALGLPFFAKPARQGSSFGVSKVHDRDGFEQAVETALRYDSKALIEEFVDGREIECSVLERADGSLTVSPPGEIIPADKHGFYTYEAKYFDADGALVKVPADVPADVVARTSEMAARAFRALGCEAMARVDFFLRADGSLLVNEVNTLPGFTDISMYAKALAAIGIGYSQVIDVLIEHALARHAAR
>NZ_CP016079.1|WP_019859312.1|3637404_3638409_-|aldo/keto-reductase
MTLATRKLGSQGLKVSAIGLGCMGMSQSYGPADEAESIATLHRAIELGCTFLDTAEVYGPHTNEALLGRALKGKRDQVTIATKFGFRIENGKQLSGVDSRPEHIREVVEASLGRLATDHIDLLYQHRVDPDVPMEDVAGAVGKLVAEGKVRFFGLSEAGSANIRRAHAVFPVSALQSEYSLWERNLEPEIIPLLKELGIGLVPFSPLGRGFLTGDVKRAEDYPEGDYRRNDPRYQGENYDANVEAAGTVRDIAAARGVKPGQIALAWLLGKGSDFAVDIVPIPGTKRRKYLEENVAATSLKLDAAEMAALGEALAPGKISGPRYGERGMAMVDR
>NZ_CP016079.1|WP_027047055.1|3638595_3638898_-|hypothetical-protein
MRYDYSMRLRDDVNAAVEKAFKTAGIVNITVTAEQVRVMNLAENVALEDVEYLVLQAAQMLGAAIEFDTLGSGLVLSGNGVEGDEPVISPLILSQPASIQ
>NZ_CP016079.1|WP_019859310.1|3639171_3639411_+|hypothetical-protein
MAELERPERLQIMLTTDELAALENWRFEKRMPSRSAAVRELLRRGLSSDGFLTAEHGVKSQEFGVLPEGDGKTSDRPSE
>NZ_CP016079.1|WP_019859309.1|3639489_3640647_+|PAS-domain-S-box-protein
MPMTEIVAATATNNEKQSATADARLAAIVDSSFDAIISKDLTSIITSWNLAAERMFGYTAEEAVGQSILMLIPDHLKSEETEIISRVRGGHRVASYETTRRRKDGALISVSLTVSPIKNANGEIVGASKIARDISAAKESERRIRLLMREVNHRVKNQFAVILSMVRETSKRSSDPREFEELIRARIMALSRSHDLLVTSEWAGASLFDLIQEHLKPFGREEQILLSGPVLTLQSNAVQNLGMAFHELGTNSSKYGALGSEDGQVEITWTIGSSAQGSGTQDLGAKDLGAKDLGRSVGASGGRDFQLLWTETSTPRPDDKGDESARKGFGTVVLQRVAPQSLGGSAQLERSPGRLSWRLSAPLASIIVPQAGIEGDDGAALGFGI
>NZ_CP016079.1|WP_019859308.1|3640830_3641064_-|DUF378-domain-containing-protein
MRIMNLVTLALIILGGLNWLSMGVTGYDVIGTVLGGAMLARLAYLIIGLAAIWQLMPGFQSFTVGEVDAERHLPHHR
>NZ_CP016079.1|WP_019859307.1|3641183_3641429_-|DUF982-domain-containing-protein
MQPAWFSKPVVVSVGVAGATRHLSNTQQAIELLTTHWRDAGSLKHQSALRACRQATSGDVPPDIAREALIEAAREAHILVE
>NZ_CP016079.1|WP_027047054.1|3642678_3642975_-|hypothetical-protein
MPARLPVLLMSLGAVLAVTAAAEARPDSRGMSCAEIRAMIQSRRAVVLTTGPNTYDRYVRQFGNECDWPEVPMSAYIPARDGHCPVYRCEEPVDNFPN
>NZ_CP016079.1|WP_019859304.1|3643366_3643849_-|pyridoxamine-5'-phosphate-oxidase-family-protein
MAIEKNDLDRVWKLMDKIGFCMLATREGDDIRSRPMAAHVVRGENAVYFLTDVDSHKDDEIEAEPNVALAFADSGGQKYVSVSGQAEVSNDRAKIKELWSTPAKAWWDSADDPAIRVLKITPKDAQYWDSPGTVVSYVKMLAAAVSDSRPEIGDSGKVRM
>NZ_CP016079.1|WP_019859303.1|3644005_3644542_+|MgtC/SapB-family-protein
MEQLVEEFGHPSYTSFPVIAARLLLAALYGAVIGFEREWRNRPAGLRTHILICVAAATFGILTIEIVHAPMFAQDSVKVDPIRVVEAVTAGVAFLAAGSILFSRGEVHGLTTGAGMWLAGAIGVACGLGLWQVAGLATLIVLVVAGLVYRLGPHPQDIKGDRGAPSPRSGDSAGKIDH
>NZ_CP016079.1|WP_027047053.1|3644538_3645441_-|alpha/beta-hydrolase
MFGNFQSMEIDTGEAGIFIRRAGNGPALLLLHGFPQTHLMWRDVAPELAERFTVICADLRGYGASACPSSDSAHAPYAKRAMAADMATLMAKLGFGSFMVAGHDRGGRVAYRMALDHPGRVEKLAVLDIVATADAWDRADARLAQGYWPWSLLAQPEPLPELMLAGAAEAVVDNALGGWGSSPSAFPPEVRQAYVDALRDPAHIHAMCEEYRAAATLDREHDHADKAAGRRIRCPVLALWSGQGALADWYAGEGGPLALWRGWADDVRGQAMPGGHFFPEEAWQQTARALANFFGEPDRA

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Crispr_ID: NZ_CP016079_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP016079_2

5119406-5119493

Orphan

Consensus_repeat	Method
CGCAAGACCGGATTCCACTTTTGCTGATCGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP016079_2

>merge|NZ_CP016079|2|5119406-5119493|CRISPRCasFinder
CGCAAGACCGGATTCCACTTTTGCTGATCGCAACCTCCCGGTTGGCGCGCGATCTGACGCAAAACCGGATTCCACTTTTGCTGATCGC

>NZ_CP016079|2|1|5119406-5119493|CRISPRCasFinder
CGCAAGACCGGATTCCACTTTTGCTGATCGC	AACCTCCCGGTTGGCGCGCGATCTGA
CGCAAAACCGGATTCCACTTTTGCTGATCGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP016079.1\|WP_027046759.1\|5124300_5124768_+\|peroxiredoxin	unknown	unknown	gnl\|CDD\|224146
NZ_CP016079.1\|WP_027046763.1\|5112823_5113987_-\|cysteine-desulfurase	unknown	unknown	gnl\|CDD\|224029
NZ_CP016079.1\|WP_019857738.1\|5130246_5130990_+\|FadR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225097
NZ_CP016079.1\|WP_051112893.1\|5109046_5110315_-\|Fe-S-cluster-assembly-protein-SufD	unknown	unknown	gnl\|CDD\|223791
NZ_CP016079.1\|WP_019857745.1\|5120824_5124205_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|273971
NZ_CP016079.1\|WP_019857736.1\|5131513_5132542_+\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|378117
NZ_CP016079.1\|WP_027046761.1\|5118462_5119197_-\|glycosyltransferase-family-2-protein	unknown	unknown	gnl\|CDD\|133022
NZ_CP016079.1\|WP_019857748.1\|5116446_5118096_-\|glycosyltransferase-family-39-protein	unknown	unknown	gnl\|CDD\|224720
NZ_CP016079.1\|WP_019857749.1\|5115570_5116401_-\|phosphatase-PAP2-family-protein	unknown	unknown	gnl\|CDD\|239483
NZ_CP016079.1\|WP_032920526.1\|5128810_5130250_+\|FAD-binding-oxidoreductase	unknown	unknown	gnl\|CDD\|223354
NZ_CP016079.1\|WP_019857742.1\|5125945_5126944_-\|sterol-desaturase-family-protein	unknown	unknown	gnl\|CDD\|225546
NZ_CP016079.1\|WP_019857750.1\|5114923_5115574_+\|FMN-binding-negative-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225366
NZ_CP016079.1\|WP_027046762.1\|5114227_5114902_+\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|225496
NZ_CP016079.1\|WP_019857737.1\|5130986_5131430_+\|VOC-family-protein	unknown	unknown	gnl\|CDD\|366361
NZ_CP016079.1\|WP_010909058.1\|5118137_5118470_-\|membrane-protein	unknown	unknown	gnl\|CDD\|226461
NZ_CP016079.1\|WP_019857753.1\|5110334_5111090_-\|Fe-S-cluster-assembly-ATPase-SufC	unknown	unknown	gnl\|CDD\|223473
NZ_CP016079.1\|WP_032920528.1\|5124818_5125949_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|227940
NZ_CP016079.1\|WP_027046760.1\|5119564_5120818_+\|tyrosine--tRNA-ligase	unknown	unknown	gnl\|CDD\|235645
NZ_CP016079.1\|WP_019857752.1\|5111117_5112635_-\|Fe-S-cluster-assembly-protein-SufB	unknown	unknown	gnl\|CDD\|236990
NZ_CP016079.1\|WP_019857741.1\|5127251_5128556_+\|M23-family-metallopeptidase	unknown	unknown	gnl\|CDD\|366703

Protein	Function_ID	Function_description	E-value
NZ_CP016079.1\|WP_027046759.1\|5124300_5124768_+\|peroxiredoxin	gnl\|CDD\|224146	COG1225, Bcp, Peroxiredoxin [Posttranslational modification, protein turnover, chaperones].	4.20299e-77
NZ_CP016079.1\|WP_027046763.1\|5112823_5113987_-\|cysteine-desulfurase	gnl\|CDD\|224029	COG1104, NifS, Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism].	1.55876e-147
NZ_CP016079.1\|WP_019857738.1\|5130246_5130990_+\|FadR-family-transcriptional-regulator	gnl\|CDD\|225097	COG2186, FadR, Transcriptional regulators [Transcription].	8.34615e-60
NZ_CP016079.1\|WP_051112893.1\|5109046_5110315_-\|Fe-S-cluster-assembly-protein-SufD	gnl\|CDD\|223791	COG0719, SufB, Cysteine desulfurase activator SufB [Posttranslational modification, protein turnover, chaperones].	8.42422e-119
NZ_CP016079.1\|WP_019857745.1\|5120824_5124205_-\|hypothetical-protein	gnl\|CDD\|273971	TIGR02099, probable_transmembrane_protein, TIGR02099 family protein. This model describes a family of long proteins, over 1250 amino acids in length and present in the Proteobacteria. The degree of sequence similarity is low between sequences from different genera. Apparent membrane-spanning regions at the N-terminus and C-terminus suggest the protein is inserted into (or exported through) the membrane. [Hypothetical proteins, Conserved].	0.00117136
NZ_CP016079.1\|WP_019857736.1\|5131513_5132542_+\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|378117	pfam09084, NMT1, NMT1/THI5 like. This family contains the NMT1 and THI5 proteins. These proteins are proposed to be required for the biosynthesis of the pyrimidine moiety of thiamine. They are regulated by thiamine. The protein adopts a fold related to the periplasmic binding protein (PBP) family. Both pyridoxal-5'-phosphate (PLP) and an iron atom are bound to the protein suggesting numerous residues of the active site necessary for HMP-P biosynthesis. The yeast protein is a dimer and, although exceptionally using PLP as a substrate, has notable similarities with enzymes dependent on this molecule as a cofactor.	3.33313e-65
NZ_CP016079.1\|WP_027046761.1\|5118462_5119197_-\|glycosyltransferase-family-2-protein	gnl\|CDD\|133022	cd04179, DPM_DPG-synthase_like, DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily. DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, and animals, have no transmembrane region, suggesting the existence of adapter molecules for membrane anchoring. This family also includes bacteria and archaea DPM1_like enzymes. However, the enzyme structure and mechanism of function are not well understood. The UDP-glucose:dolichyl-phosphate glucosyltransferase (DPG_synthase) is a transmembrane-bound enzyme of the endoplasmic reticulum involved in protein N-linked glycosylation. This enzyme catalyzes the transfer of glucose from UDP-glucose to dolichyl phosphate. This protein family belongs to Glycosyltransferase 2 superfamily.	3.19548e-46
NZ_CP016079.1\|WP_019857748.1\|5116446_5118096_-\|glycosyltransferase-family-39-protein	gnl\|CDD\|224720	COG1807, ArnT, 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family [Cell envelope biogenesis, outer membrane].	5.5269e-76
NZ_CP016079.1\|WP_019857749.1\|5115570_5116401_-\|phosphatase-PAP2-family-protein	gnl\|CDD\|239483	cd03389, PAP2_lipid_A_1_phosphatase, PAP2_like proteins, Lipid A 1-phosphatase subfamily. Lipid A 1-phosphatase, or LpxE from Francisella novicida selectively dephosphorylates lipid A at the 1-position. Lipid A is the membrane-anchor component of lipopolysaccharides (LPS), the major constituents of the outer membrane in many gram-negative bacteria.	1.36844e-64
NZ_CP016079.1\|WP_032920526.1\|5128810_5130250_+\|FAD-binding-oxidoreductase	gnl\|CDD\|223354	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion].	1.10274e-105
NZ_CP016079.1\|WP_019857742.1\|5125945_5126944_-\|sterol-desaturase-family-protein	gnl\|CDD\|225546	COG3000, ERG3, Sterol desaturase [Lipid metabolism].	7.0705e-45
NZ_CP016079.1\|WP_019857750.1\|5114923_5115574_+\|FMN-binding-negative-transcriptional-regulator	gnl\|CDD\|225366	COG2808, PaiB, Transcriptional regulator [Transcription].	3.08702e-106
NZ_CP016079.1\|WP_027046762.1\|5114227_5114902_+\|alpha/beta-hydrolase	gnl\|CDD\|225496	COG2945, COG2945, Predicted hydrolase of the alpha/beta superfamily [General function prediction only].	1.60916e-121
NZ_CP016079.1\|WP_019857737.1\|5130986_5131430_+\|VOC-family-protein	gnl\|CDD\|366361	pfam00903, Glyoxalase, Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily.	1.7074e-15
NZ_CP016079.1\|WP_010909058.1\|5118137_5118470_-\|membrane-protein	gnl\|CDD\|226461	COG3952, COG3952, Predicted membrane protein [Function unknown].	2.31388e-50
NZ_CP016079.1\|WP_019857753.1\|5110334_5111090_-\|Fe-S-cluster-assembly-ATPase-SufC	gnl\|CDD\|223473	COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones].	1.89143e-143
NZ_CP016079.1\|WP_032920528.1\|5124818_5125949_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|227940	COG5653, COG5653, Protein involved in cellulose biosynthesis (CelD) [Cell envelope biogenesis, outer membrane].	5.63389e-120
NZ_CP016079.1\|WP_027046760.1\|5119564_5120818_+\|tyrosine--tRNA-ligase	gnl\|CDD\|235645	PRK05912, PRK05912, tyrosyl-tRNA synthetase; Validated.	0
NZ_CP016079.1\|WP_019857752.1\|5111117_5112635_-\|Fe-S-cluster-assembly-protein-SufB	gnl\|CDD\|236990	PRK11814, PRK11814, cysteine desulfurase activator complex subunit SufB; Provisional.	0
NZ_CP016079.1\|WP_019857741.1\|5127251_5128556_+\|M23-family-metallopeptidase	gnl\|CDD\|366703	pfam01551, Peptidase_M23, Peptidase family M23. Members of this family are zinc metallopeptidases with a range of specificities. The peptidase family M23 is included in this family, these are Gly-Gly endopeptidases. Peptidase family M23 are also endopeptidases. This family also includes some bacterial lipoproteins for which no proteolytic activity has been demonstrated. This family also includes leukocyte cell-derived chemotaxin 2 (LECT2) proteins. LECT2 is a liver-specific protein which is thought to be linked to hepatocyte growth although the exact function of this protein is unknown.	1.99719e-43

>NZ_CP016079.1|WP_027046761.1|5118462_5119197_-|glycosyltransferase-family-2-protein
MPDALISIVIPCRNEAANLPLLIDEIEAAMAGRDFELIIVNDGSTDETAAVLTEQAALRCFPVRELRHQKSAGQSLSVRSGAWAARGGIVATIDGDGQNDPQYIPVLVDALRQAGPDFGAAQGQRLKRRDSKVKQLASRFANWLRGAILHDETRDTGCGLKAVHTDILRKLPFFDGTHRFVPALVIQEGYRVVHCDVVDRSRRHGKSNYGIFDRGLQGALDLGGVWWLRRRRRRMPKVEEIKRV
>NZ_CP016079.1|WP_010909058.1|5118137_5118470_-|membrane-protein
MFNVLQELGTWLHQVFIKQFDAWILLGFVAQFFFTMRFVVQWLASEKAKRSVVPVAFWFFSLFGGGLLLIYAIQRQDPVFIAGQAMGMFIYIRNLWLIANERKAAMTKVD
>NZ_CP016079.1|WP_019857748.1|5116446_5118096_-|glycosyltransferase-family-39-protein
MALNRNYIFLFLFSLVMTLSGLASLPPIDRDESRFVQATKQMAESGDYVDIRFQEASRYQKPIGIYWLQSAAVTLSGKGAEAPIWVYRTISALGIAIAVLAIAWTGTNLFGANAGIAAGLVMAAIFATAFEGRDAKTDAMLLACCVAAQGALAQIYVASRRNEPVAGHLWWIFWIAQGAAILIKGPIAPLLSALTIAVLFAFERDGRWLAKLRVGRGLLLVVVIALPWLAAITWKSHGAFLQQAVGKDMFGKVASGEESHGLPPGFYMLTYSLFMWPFGLIAVGAGLQALNRLRDDVRLRFCLAWYIPFWLVFELIPTKLPHYVLPAYPGMALLIGWLLTLQPEDANAPLKRWQQWLWWSTAFGLVVVSLGLAAVCIGAPIYLTHSFSWWSIPAAAAALGTGYFAFSRQLQVPLPRIGATAACAGITYALLFGVIAPSLKPIWLSPAIKQAVLANKPCATTVLASARYQEPSLVFLVGTKTVLTDVGGVAQHLLADPACALGLAPIEDEQKLNGMLSVQGKSMNRVAEVDGLNYSSGDKLSLGLYRVAP
>NZ_CP016079.1|WP_019857749.1|5115570_5116401_-|phosphatase-PAP2-family-protein
MLVKSRPTVSGRLLGVGRRSLSNFRDTTQIVRRRFAARPARYPNIAWPVWLVVWVLLTAAAFVRLDTPAGMVHGQWSGAGVAEFLTQFALGGWYLIPSALLLVGANLTDWRSLSRRSLMLVYNWTCLAFLVLSAVGLSGLLVNVLKYAIGRARPLYFQDFGVLALHPFAFDARFAGFPSGHATTMGAVFGVLLLLFPRRWYIALVITACLASTRVFVGAHYPSDTVAGFGLGCTFALACGLVFARLGFIFRPTPSGLPVRKASFRLIAPENKSLPD
>NZ_CP016079.1|WP_019857750.1|5114923_5115574_+|FMN-binding-negative-transcriptional-regulator
MYEPPHFQETRPDVLHGLIRAHPLGMLISNGPDGPVANAIPFLLDAAAAPNGRLRAHLAKANPHWRLIADNPASPVLIVFQGADAYVTPSWYETKRETGKVVPTWNYAIVQVRGTVKVIDDQEWLARQIGDLTASQEGAREAPWAVTDAPPPFIQSQIKGIIGLEIEISEIHGKWKVSQNRPVADRAGVAEGLESEVADESDMARLVRSYGGLDSN
>NZ_CP016079.1|WP_027046762.1|5114227_5114902_+|alpha/beta-hydrolase
MPEVIFTGPAGRLEGRYQPSKEKSAPIAIVLHPHPQFGGTMNNKIVYDLFYMFQKRDFTTLRFNFRGIGRSQGEFDHGTGELSDAAAALDWVQSLHPDSKSCWVAGYSFGSWIGMQLLMRRPEIEGFISIAPQPNTYDFSFLAPCPSSGLIIHGDADKVAPPKDVQGLVDKLHTQKGITITQKTLPGANHFFANHADLLIEECADYLDRRLAGELSDPRPKRLR
>NZ_CP016079.1|WP_027046763.1|5112823_5113987_-|cysteine-desulfurase
MAAKRAYLDYNASAPLLPAAREAMVAALDVAANPSSVHAEGRAARRLIETARREVAALVNARPEHVVFTSGATEAASTLLAPEWQMGRGSVRMSRLYVCEADHPCLLNGGRFPAGQVTRIGVDANGIADLAALAGALAGHDKADGLPLVAIHGANNETGVIQPIDRIAEIVKAAGGILVVDAVQAAGRVSIDMSAGYADYLILSSHKIGGPKGVGAIVAAADLMMPKPLINGGGQEKGHRGGTENLAAISGFGVAAREALAGLPAIDAVRQHRDEIEAIVKMLAPDAEIFGTDAPRLANTTFFAIAGIKAETAQIAFDLAGVALSAGSACSSGKVGPSHVLKAMGYGDSLGALRVSIGAATGAEDIELFRTALAGIAQRRAGREQAA
>NZ_CP016079.1|WP_019857752.1|5111117_5112635_-|Fe-S-cluster-assembly-protein-SufB
MPAVQDTIDRVRKIDVDQYKYGFQTEIAVDKAPKGLSEDIIRFISAKKDEPSWMLEWRLEAYRRWLTLEEPTWARVHYPKIDFQDIYYYAAPKSTPGPSSLSDVDPELLKVYEKLGIPLREQEILAGVQKTDASELEEPSDNVYKSGRVAVDAVFDSVSVVTTFKKELAQAGVIFCSISEAIREHPELVQKYLGSVVPTSDNFYATLNSAVFTDGSFVFVPKGVRCPMELSTYFRMNEKNTGQFERTLIIAEEGAYVSYLEGCTAPQRDENQLHAAVVELVALDDAEIKYSTVQNWYPGDAEGKGGIYNFVTKRGDCRGDRSKISWTQVETGSAITWKYPSCILRGDDSSGEFYSIAVSNGYQQVDSGTKMIHLGKNTSSRIISKGIAAGFSQNTYRGQVSAHRKATNARNFTNCDSLLIGDQCGAHTVPYMEAKNSTAQFEHEATTSKISEDQKFYVMQRGIPEEEAIALIVNGFVKDVIQQLPMEFAVEAQKLIGISLEGSVG
>NZ_CP016079.1|WP_019857753.1|5110334_5111090_-|Fe-S-cluster-assembly-ATPase-SufC
MLEIKNLHARIVDDGTEIIRGLNLTVKAGEVAAIMGPNGSGKSTLSYILAGREDYEVTEGDILYNGQSILEMDPAERATSGIFLAFQYPMEIPGVATMEFLKVAMNEQRKARGEEPLKIPEFLKRVKEAAASLNMDMAMLKRPLNVGFSGGEKKRAEILQMKLLEPKLCVLDETDSGLDIDALKIVSDGVNALRAPDRAFLVITHYQRLLEHIVPDSVHVLYRGQVIKSGDKSLALDLEANGYAGVIGEAA
>NZ_CP016079.1|WP_051112893.1|5109046_5110315_-|Fe-S-cluster-assembly-protein-SufD
MNMHTQPQRTPAETALIDAFGDRLSLLPGDGAVMLKRDDAIEAIKHGLPTRRVESWHYTDLRRLLSVVPDFDPAAMAKAIAPIVEGSAVLPVLNGKSDAKVPAIEGVAVQCLSEKLIDGSIAPGLDPYGSDDAIGALNTAFVADGYFVDIADGAELEKPIELQNVQAGGQTHVRLAVRVGAGAKAVIVERQAGDGAALVSSVSQLVLGEGAEVTWLIVQEQPDTATHLAQFKAHIGKNAKLTLFVMNAGGKLVRQEVMVKTTGEGADFKLRGINLLAGDTHSDVTMVLDHAVPHTTSTEVIRNVVTGKARGVFQGRINVHQYAQKTNAKMACNTLLLSDDGEFSTKPELEIFADDVVCGHGATVTEIDHDHLFYLMARGVDEKSARGLLVKAFVAEVIEELDDETIVEALEARLDEWFVTHG
>NZ_CP016079.1|WP_027046760.1|5119564_5120818_+|tyrosine--tRNA-ligase
MPAFKSDFLRTMSERGFIHQISDETGLDQLFAKETVTAYVGYDATATSLHIGNLISATMLYWLQETGHRPIALMGGGTSMIGDPSFRDDQRSLLTPEAIATNIEGIKRIFGRILRFGDGPNDAIMVNNADWLMKLNYVEFLRDVGRHFSVNRMLTFDSVKLRLDREQSLSFLEFNYMILQGYDFVELARRQNCRLQMGGSDQWGNIINGVDLGHRMGTPQLYALTTPLLTTSSGAKMGKSAKGAVWLNGDLFSPYDFWQYWRNTEDADVERFLKIFTRLPLDEIARLAALGGSEINEAKKILATETTAIVHGREAANQAEETARKTFEEGALADTLPTVGADKAALEAGIGILSLLVTAGLASSNGEARRHIQGGAVRINDQTVNDDRRMVTLQDLSPENVVKLSLGKKKHVLVRPA
>NZ_CP016079.1|WP_019857745.1|5120824_5124205_-|hypothetical-protein
MDQEQPQHEKIRFRRDEITDLGALPSACRVPPLGQASIGRGFRILSRVFAGMVAFMVLAAVVVYLVGASGVGSERLRAEAETAIEKLAGVDVNVAVGPARITLDSSSFVALQVSDVSLRTSDDKPMADAGRVRFGMRLIPLLWGEVRLTSARISDAHIVVAAMPSGGDWTAQLRNEDGLVDPERLSDALFGNIHRALDAVREDSMRRIDLSNVEFLLPDAGAIKLVKIADATVLQSGPGAVEFSSEADVDGRKVTVAASATRDVAAHRVTALNASVDLVSADETAAGAGKLGAIALKLTGAEGSGTNESRLTASLSSAGSVLDLGTRGLLPADVDVDATLVHGSNKIQVDRLLLKTGRSSFNFGGSIGPKPATGAAGEEPSYRYDLTSDGSTLAPSESPEPALTFLARIAGVYQTKSHKLVAEQIAVRSAASGEVLGTAAVAFVDGKAPGVNLALNVHDMPVSHVKQLWPWFSARNARLWVLDNLFGGRVVDADLQFQVVPDRLGNGVPLSAEEVFGRFQIEGSRFDTAGRIPPIRDAVGVVAFHGNDVDISLSSGTVYMPSGRTVAASNGTLAVKAANRPPVIGALDIDVEGEAPAVAELASYEPINAMRHVGFLPEDLSGSVTGHVRADIPLQSGVDTSKLDWLVSLDYTGLSLAKPFEGQTVTDADGSITVDPEKAVISAKAALNGIPAELDLIEPLADNGPARSRKVAMVLDDKVRAAAMPGLTPLLGGTVKVAIDKSGDGNQNVSADLTNARLDIPWAGWSKGAGVPANVTFVMTKAGDTTTLSDFSLDGKTFSIDGSIVLINGALSSAKFGKVTLNRGDDVAISVKRSGKGYAVDINGNALDARSLIKQFTSDVDTATKTTGTDNISVSADVEQLTGFHDEQLSNLKLDYSAAGSRVNGLKVSATASSGAAITISNTTGDGRRSLNVKSADAGAILRFLNVYEHMEGGSIMLALTGAGDGPMKGKVDTSNFFIVNEPKLASIVSTTPAGDNRSLNQAVKGNLDTSRVKFERGYAEIEKGSGYLKLANGVLRGPRIGTTFQGILYDQNNNMDMTGTFMPVYGLNRIFGELPIVGALLGNGRDRGLIGVTYRLRGNANKPVLDVNPLSVIAPGIFRSIFEYR
>NZ_CP016079.1|WP_027046759.1|5124300_5124768_+|peroxiredoxin
MADLDVGDLAPQFDLPRDGGGSLSLTASAGKPVVLYFYPQDDTTSCTQEAISFSQLKPEFEKAGAVVIGLSPDNVKKHDKFKSKYNLTVDLAADEERKVIEAYHLWVEKSMYGRKYMGVERATFLIGRDGRIARIWRKVRIKGHAEEVLEAVRAL
>NZ_CP016079.1|WP_032920528.1|5124818_5125949_-|GNAT-family-N-acetyltransferase
MNAPFVLAIPRTRSFEVVTSAARLAEIAPAWAALWQRAGGLVFQHPDWIAAWWRTTPHQQRRTLRIGLAWNGDRLDGVIALATFKRSGIRMLEWAAKDHSDYGDALVAPDSDPHVISRLWQHVFDQGGFDLVYLNRLLPDAGVRGLLDPASHLQPNHRSEISYRVVGPWQSGAEWFETLSKKARQNYRRGRKFMEEGGAVRFRLLGADDPREPVLARVAVLKRLWLARHGRASDLFDEGSPVLAALVSVLAELGLLRIFVLELDDTIIAVSINFEQHGTMMAFVTTYDPEYERASPGMVLMMDYIQWSLDRGLAKVDFLCGGEDFKRRFATQSARLSSMIGARGLRGHLAALADRVVHVTESWRAQPQPKAQTSDE
>NZ_CP016079.1|WP_019857742.1|5125945_5126944_-|sterol-desaturase-family-protein
MLGDLVGKILDKISGTSLLATGLLLLTAFVSALVAYWRTVEEKSWKEFFEFVIPHEVITHPSARADLLFWVTKKALMPFLMLPAGIVFVSAVGYATNWLFSTLFQFQPPLVQGPAGPVTVLIFTITMLLAYDISYYLYHVAQHRYPVLWELHKVHHSAEVMVGITKDRVHPLDELMNRAWDGLIVGVCFGIWSLISLNLVELTVFGVNVYVMRNILMMDFVRHTHFKISFGPLNNVILCPHWHQLHHSTDPRHYDKNFGLLFSFWDRLFGTLCVPKPDEDFKFGLVDRNVRDYQSLAGLYVMPLKRMWGHIARRIRPAKPRTVQSSEEGTRP
>NZ_CP016079.1|WP_019857741.1|5127251_5128556_+|M23-family-metallopeptidase
MNATGQSAVFGRRKEPHTVIIARGNEIRHFTIRPWLAAFIGSALAAIAIGYLLATSYLVLRDDLIGATTARQARMQQAYEDRISALRAQVDRITSRQLLDQQLMENKVSELIERQTQLSQRHGRLGPLLERAENEVGAAPAEDPAAAAKPDKHAEVTGSISQPARNYAVASLGADLGAADTRPFSLWSTRTDPLPSDTAADRADKLFVSINQSLKSIENEQLTRISTLADNAYKSADAIQQALQAAGLPVDSDFGKNESDVGGPLIPLDSSMIFDSKVKELDEALDTLDQLKKEARQLPLANPAPGHSVTSPFGVRTDPILGTAALHSGMDFRAPIGMAAKVTAPGIVTKAGWNGGYGRMVEVDHGNGFATRYGHLSEIDVTVGEKLDAGAIIGKTGSSGRSTGPHLHYEVRHNGEAIDPLRFLTVGRKVAQYL
>NZ_CP016079.1|WP_032920526.1|5128810_5130250_+|FAD-binding-oxidoreductase
MTIHGISPDVLAALEHVLGQSGVAADAADMAKYLVDWSGDHHGGALAVLKPASVAEVQAAVRLCGTLGLAMIPQGGNTGLVAGAIDIGTARGAVVISLERLNRIRLVDADNFILQADAGCILQHIKDAADEQDCLFPLALGAQGSCQIGGNAASNAGGVNVLRYGMARDLIVGLEAVLPDGALWNGFSGLRKDNRGYDLKQLFIGAEGTLGIITGVEMKLFPKPGRVETAYLGLPSFEAAISLFRRARRQCCDLISAFEIIGAECMELARLADPNIVAPVMAPVHVLIELSSSAAIDLRALLVDFLAGTMAEDLVTDAVLAESGAQARAFWAIREGLVEGQAKRGYHVRTDLSVRISDIPTLIAQARQFIELQHPGWISQAYGHAGDGNIHFNALPPLDLAEPAARATGATITTGLYDIVNALGGSISAEHGIGRTRQRVYWAGMSAVQRRLVSTLKDALDPGGLMNPGCLFPATETSS
>NZ_CP016079.1|WP_019857738.1|5130246_5130990_+|FadR-family-transcriptional-regulator
MKQRLAAIGTVEALPHRVAAFLSREIESGDLNPGSLLPTEQQLSEKFGVSRNVVREAIAQLRADGMVEARQGVGSFVLAPEQRAAIRIDRETLKEGQNMERLFELRCILEAESAALAAERREQEHLDAIKGALDRMSGEERWEDGSIDADLLFHREIARATGNSYIHTFISFVCEQIRRSIYYARQTNPLHDLVEVNVGEHVRIYEALVAGDPAAAEAAMRAHIIGAANRVGVKLPSARGERTGGGK
>NZ_CP016079.1|WP_019857737.1|5130986_5131430_+|VOC-family-protein
MSMAVASITRISDVCLLVEDIERTVAFYVDKLGFRLRRRAEGFADFHGEGVTLAAWEIDHISQHAGVSKLRSPRHAHKVCVAVQLGAPDEIDRLHAELTAKGVPFYGPPENYVWNARCAYFTDPDDTLWELYAWLDGGPGDYHDEQP
>NZ_CP016079.1|WP_019857736.1|5131513_5132542_+|ABC-transporter-substrate-binding-protein
MNRRGFMKSGLAAVAMASGGMQLVLTPGAKAAGKVVIQYDWLMSNGQIGDIVAVANGYFKDAGLDVEFSPGGPNASTVPPVISGAAQLGQFSETPQLFAARASGVPVKIIACGFRTGPYALTSKASNPIKGVADLKGKKIGIQPTARFVLDEILAKNGMSASDLTVINVGFDKGPLVRGDVDAIGGWITNTQALSVVGDDRIDLLVRDLGLNSYADVYFATDAAIEKDPDTLAKFIGAVAKGWGWVHANPQEAVKKMVAAYPEMDLGWEEKTVNLVLRLSFDAATAKDGWGTFDPASIEEQLALLDKVGQYPNGRPKAADVYTTKILELSAADRPKLDAPAA

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP016079_2	2.1\|5119437\|26\|NZ_CP016079\|CRISPRCasFinder	5119437-5119462	26	NC_010510	Methylobacterium radiotolerans JCM 2831 plasmid pMRAD01, complete sequence	141981-142006	6	0.769

1. spacer 2.1|5119437|26|NZ_CP016079|CRISPRCasFinder matches to NC_010510 (Methylobacterium radiotolerans JCM 2831 plasmid pMRAD01, complete sequence) position: , mismatch: 6, identity: 0.769

aacctcccggttggcgcgcgatctga	CRISPR spacer
gcgcgcccggttggcgcgcgatctac	Protospacer
.  * *******************.

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

3007861 : 3058637

Orpheovirus(20.0%)

integrase,transposase,tRNA

attL 3025237:3025253|attR 3061356:3061372

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_019860016.1\|3007861_3009358_+\|tRNA	histidine--tRNA ligase	A0A2I2L577	Orpheovirus	3.3e-29	26.3
WP_019860015.1\|3009536_3010658_+	ATP phosphoribosyltransferase regulatory subunit	NA	NA	NA	NA
WP_019860014.1\|3010654_3011353_+	ATP phosphoribosyltransferase	NA	NA	NA	NA
WP_019860013.1\|3011454_3013227_+	AMP-binding protein	A0A2H4PQM9	Staphylococcus_phage	1.5e-28	28.9
WP_027047178.1\|3013296_3014400_+	calcium:proton antiporter	NA	NA	NA	NA
WP_019860011.1\|3014447_3015356_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_019860009.1\|3016275_3016800_+	hypothetical protein	NA	NA	NA	NA
WP_019860008.1\|3016852_3017524_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_019860007.1\|3017627_3018572_-	nucleoside hydrolase	NA	NA	NA	NA
WP_019860006.1\|3018675_3019689_+	isopenicillin N synthase family oxygenase	NA	NA	NA	NA
WP_027047177.1\|3019720_3020578_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_019860004.1\|3020634_3021576_+	amino acid ABC transporter permease	NA	NA	NA	NA
WP_167626473.1\|3021626_3022379_+	amino acid ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	1.3e-26	35.8
WP_019860002.1\|3022397_3023306_-	hydrogen peroxide-inducible genes activator	NA	NA	NA	NA
WP_020628971.1\|3023456_3025655_+	catalase/peroxidase HPI	NA	NA	NA	NA
3025237:3025253	attL	NA	NA	NA	NA
WP_019860000.1\|3025727_3026405_-	MIP family channel protein	NA	NA	NA	NA
WP_019859999.1\|3026706_3027996_+	RsmB/NOP family class I SAM-dependent RNA methyltransferase	NA	NA	NA	NA
WP_155249222.1\|3028107_3028524_+	tryptophan-rich sensory protein	NA	NA	NA	NA
WP_023686843.1\|3028620_3029079_+	PaaI family thioesterase	NA	NA	NA	NA
WP_032920690.1\|3029078_3029744_+	5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase	NA	NA	NA	NA
WP_019859996.1\|3029799_3031362_+	glutamine-hydrolyzing GMP synthase	NA	NA	NA	NA
WP_019859995.1\|3031678_3032932_+\|integrase	site-specific integrase	T1S9J3	Salmonella_phage	1.6e-109	49.6
WP_080643972.1\|3032912_3033167_-	AlpA family phage regulatory protein	NA	NA	NA	NA
WP_027047176.1\|3033679_3035020_-\|transposase	ISNCY family transposase	NA	NA	NA	NA
WP_080643796.1\|3035623_3035806_+	hypothetical protein	NA	NA	NA	NA
WP_155249130.1\|3035856_3035997_+	hypothetical protein	NA	NA	NA	NA
WP_019859992.1\|3036062_3036407_-	hypothetical protein	NA	NA	NA	NA
WP_019859991.1\|3036403_3037492_-\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_155249221.1\|3038283_3043782_+	DUF3320 domain-containing protein	NA	NA	NA	NA
WP_019859987.1\|3045709_3045943_-	hypothetical protein	NA	NA	NA	NA
WP_167626435.1\|3045929_3046664_-\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_019859983.1\|3047369_3049055_-	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_065203644.1\|3050597_3051683_-	HlyD family efflux transporter periplasmic adaptor subunit	NA	NA	NA	NA
WP_155249129.1\|3051756_3052080_+	hypothetical protein	NA	NA	NA	NA
WP_155249128.1\|3052200_3052365_-	hypothetical protein	NA	NA	NA	NA
WP_019859975.1\|3054934_3055354_+	hypothetical protein	NA	NA	NA	NA
WP_019859973.1\|3056531_3057725_-\|transposase	IS91 family transposase	NA	NA	NA	NA
WP_019859972.1\|3057728_3058637_-\|integrase	tyrosine-type recombinase/integrase	S5W9T9	Leptospira_phage	2.6e-29	29.9
3061356:3061372	attR	NA	NA	NA	NA

DBSCAN-SWA_2

4007755 : 4030380

Tupanvirus(16.67%)

protease,head,terminase,integrase,tRNA,capsid

attL 4008469:4008485|attR 4024103:4024119

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_019858921.1\|4007755_4009084_+\|tRNA	proline--tRNA ligase	A0A2K9L297	Tupanvirus	6.7e-10	28.0
4008469:4008485	attL	NA	NA	NA	NA
WP_019858920.1\|4009080_4010367_+	lipoprotein-releasing ABC transporter permease subunit	NA	NA	NA	NA
WP_019858919.1\|4010366_4011047_+	ABC transporter ATP-binding protein	NA	NA	NA	NA
WP_019858917.1\|4011510_4012761_+	peptidase M50	NA	NA	NA	NA
WP_019858916.1\|4012772_4013516_-	lipoyl(octanoyl) transferase LipB	NA	NA	NA	NA
WP_063827346.1\|4013858_4014923_-\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_020628914.1\|4014931_4015144_-	hypothetical protein	NA	NA	NA	NA
WP_019858913.1\|4015289_4015541_-	hypothetical protein	NA	NA	NA	NA
WP_019858909.1\|4016688_4017249_-	YfbU family protein	NA	NA	NA	NA
WP_155249109.1\|4017263_4017455_-	hypothetical protein	NA	NA	NA	NA
WP_019858907.1\|4017758_4018520_+	hypothetical protein	NA	NA	NA	NA
WP_167626440.1\|4018528_4019185_-	hypothetical protein	NA	NA	NA	NA
WP_019858906.1\|4019382_4019643_-	hypothetical protein	NA	NA	NA	NA
WP_063827331.1\|4019969_4020767_+	DUF4145 domain-containing protein	A0A1S5S8Y9	Streptococcus_phage	2.3e-34	40.8
WP_019858902.1\|4020836_4021634_+	hypothetical protein	NA	NA	NA	NA
WP_019858901.1\|4021670_4022057_-	DUF3168 domain-containing protein	NA	NA	NA	NA
WP_019858900.1\|4022056_4024054_-	hypothetical protein	A0A2I7S8V9	Vibrio_phage	2.6e-05	23.3
WP_019858899.1\|4024058_4025645_-\|terminase	terminase large subunit	G9FHX7	Nocardia_phage	2.1e-50	30.8
4024103:4024119	attR	NA	NA	NA	NA
WP_080643763.1\|4025641_4026052_-\|terminase	P27 family phage terminase small subunit	NA	NA	NA	NA
WP_019858897.1\|4026048_4026372_-\|head	phage head closure protein	NA	NA	NA	NA
WP_019858896.1\|4026368_4026755_-	HK97 gp10 family phage protein	B4UTQ0	Rhizobium_phage	3.3e-10	31.7
WP_019858895.1\|4026754_4027366_-	hypothetical protein	NA	NA	NA	NA
WP_019858893.1\|4027805_4028078_-	hypothetical protein	NA	NA	NA	NA
WP_019858892.1\|4028239_4028683_-	hypothetical protein	NA	NA	NA	NA
WP_019858891.1\|4028713_4029856_-\|capsid	phage major capsid protein	B0VK33	Azospirillum_phage	2.1e-52	38.1
WP_019858890.1\|4029852_4030380_-\|head,protease	HK97 family phage prohead protease	NA	NA	NA	NA

DBSCAN-SWA_3

4330605 : 4338853

uncultured_Mediterranean_phage(85.71%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_027046916.1\|4330605_4331409_+	segregation/condensation protein A	A0A1B1IVW1	uncultured_Mediterranean_phage	6.4e-32	33.1
WP_019858563.1\|4331405_4332170_+	SMC-Scp complex subunit ScpB	A0A1B1IVT7	uncultured_Mediterranean_phage	2.1e-40	46.2
WP_019858561.1\|4332350_4332572_+	twin-arginine translocase TatA/TatE family subunit	A0A1B1IVR9	uncultured_Mediterranean_phage	5.1e-08	65.9
WP_019858560.1\|4332602_4333358_+	twin-arginine translocase subunit TatB	NA	NA	NA	NA
WP_019858559.1\|4333354_4334230_+	twin-arginine translocase subunit TatC	A0A1B1IVR7	uncultured_Mediterranean_phage	1.5e-50	46.3
WP_019858558.1\|4334334_4335639_+\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	4.0e-100	56.3
WP_019858557.1\|4335638_4336397_+	5'/3'-nucleotidase SurE	NA	NA	NA	NA
WP_019858556.1\|4336393_4337047_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	1.9e-18	38.5
WP_019858555.1\|4337305_4338853_+	peptidoglycan DD-metalloendopeptidase family protein	A0A2K9VGT1	Pontimonas_phage	1.6e-10	37.4

DBSCAN-SWA_4

6485398 : 6543905

uncultured_virus(20.0%)

protease,integrase,transposase

attL 6475338:6475356|attR 6542393:6542411

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
6475338:6475356	attL	NA	NA	NA	NA
WP_020628761.1\|6485398_6486541_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_155249250.1\|6489632_6490136_+	hypothetical protein	NA	NA	NA	NA
WP_019863568.1\|6490125_6490575_+	hypothetical protein	NA	NA	NA	NA
WP_019863567.1\|6490555_6491464_-	DUF1738 domain-containing protein	A0A1V0EEV1	Caulobacter_phage	3.0e-46	38.5
WP_019863566.1\|6491460_6492180_-	DUF1738 domain-containing protein	A0A1B1IRD0	uncultured_Mediterranean_phage	1.1e-27	39.2
WP_019863563.1\|6494747_6495044_+	co-chaperone GroES	A0A221S4G8	uncultured_virus	5.4e-21	55.4
WP_019863562.1\|6495108_6496773_+	chaperonin GroEL	A0A240F779	uncultured_virus	4.7e-170	59.8
WP_080644019.1\|6497109_6497586_-	ProQ/FinO family protein	NA	NA	NA	NA
WP_051112871.1\|6497893_6499174_+	LLM class flavin-dependent oxidoreductase	NA	NA	NA	NA
WP_019863557.1\|6499595_6502343_+	hypothetical protein	NA	NA	NA	NA
WP_019863556.1\|6502966_6504355_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA
WP_019863554.1\|6505054_6507130_-	recombinase family protein	NA	NA	NA	NA
WP_155249177.1\|6507113_6507287_-	hypothetical protein	NA	NA	NA	NA
WP_019863552.1\|6509079_6510108_+\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_019863550.1\|6511087_6511663_+	diaminobutyrate acetyltransferase	NA	NA	NA	NA
WP_051112870.1\|6511680_6512988_+	diaminobutyrate--2-oxoglutarate transaminase	NA	NA	NA	NA
WP_019863548.1\|6512998_6513391_+	ectoine synthase	NA	NA	NA	NA
WP_019863547.1\|6513578_6514964_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA
WP_027047825.1\|6515123_6516140_-	phosphoglycerate dehydrogenase	M1NSB9	Streptococcus_phage	4.2e-20	32.9
WP_155249176.1\|6516460_6517366_+	6-bladed beta-propeller	NA	NA	NA	NA
WP_027047824.1\|6517506_6518280_+	ectoine/hydroxyectoine ABC transporter ATP-binding protein EhuA	W5SAS9	Pithovirus	6.4e-13	24.7
WP_027047823.1\|6518376_6519231_+	ectoine/hydroxyectoine ABC transporter substrate-binding protein EhuB	NA	NA	NA	NA
WP_019863541.1\|6519388_6520048_+	ectoine/hydroxyectoine ABC transporter permease subunit EhuC	NA	NA	NA	NA
WP_019863540.1\|6520047_6520707_+	ectoine/hydroxyectoine ABC transporter permease subunit EhuD	NA	NA	NA	NA
WP_019863539.1\|6520712_6521489_+	ectoine utilization protein EutA	NA	NA	NA	NA
WP_019863538.1\|6521671_6522850_+	ectoine hydrolase DoeA	NA	NA	NA	NA
WP_019863537.1\|6522854_6523859_+	N-alpha-acetyl diaminobutyric acid deacetylase DoeB	NA	NA	NA	NA
WP_155249175.1\|6523953_6524217_+	hypothetical protein	NA	NA	NA	NA
WP_019863536.1\|6524222_6524567_-	hypothetical protein	NA	NA	NA	NA
WP_019863535.1\|6524568_6525672_-\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_155249174.1\|6525700_6526519_+	phosphoglycerate dehydrogenase	M1NSB9	Streptococcus_phage	5.2e-13	32.1
WP_080643887.1\|6526605_6526950_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_027047822.1\|6527215_6529402_-	tetratricopeptide repeat protein	NA	NA	NA	NA
WP_167626428.1\|6531230_6531512_+	hypothetical protein	NA	NA	NA	NA
WP_051112868.1\|6532141_6533287_-	ImmA/IrrE family metallo-endopeptidase	B6SBZ6	Clostridium_virus	1.2e-39	31.4
WP_155249173.1\|6533299_6534025_-	hypothetical protein	NA	NA	NA	NA
WP_019863526.1\|6534049_6534280_-	hypothetical protein	NA	NA	NA	NA
WP_019863525.1\|6534279_6535359_-	macro domain-containing protein	A0A0B4N0V6	Escherichia_phage	1.1e-21	39.9
WP_027047818.1\|6536274_6537312_-\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_019863523.1\|6538276_6539461_+	acyltransferase	A0A0S2SXM2	Bacillus_phage	8.6e-17	31.6
WP_032920917.1\|6541330_6542299_-\|protease	omptin family outer membrane protease	NA	NA	NA	NA
WP_065203639.1\|6542939_6543905_-\|protease	omptin family outer membrane protease	NA	NA	NA	NA
6542393:6542411	attR	NA	NA	NA	NA

DBSCAN-SWA_5

6561033 : 6693809

100

Brevibacillus_phage(15.38%)

protease,integrase,transposase

attL 6605901:6605918|attR 6655411:6655499

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_065203640.1\|6561033_6561999_-\|protease	omptin family outer membrane protease	NA	NA	NA	NA
WP_027047811.1\|6562957_6563362_-	hypothetical protein	NA	NA	NA	NA
WP_019863500.1\|6563358_6564546_-	ThiF family adenylyltransferase	NA	NA	NA	NA
WP_019863499.1\|6564520_6565198_-	hypothetical protein	NA	NA	NA	NA
WP_032921561.1\|6565325_6565532_+	ribbon-helix-helix protein, CopG family	NA	NA	NA	NA
WP_019863497.1\|6565528_6566176_+	hypothetical protein	NA	NA	NA	NA
WP_032920912.1\|6566191_6566719_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_019863494.1\|6566715_6567672_+	ImmA/IrrE family metallo-endopeptidase	NA	NA	NA	NA
WP_019863493.1\|6568540_6568750_+	hypothetical protein	NA	NA	NA	NA
WP_019863490.1\|6569041_6569497_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_019863489.1\|6571088_6571964_-	AraC family transcriptional regulator	NA	NA	NA	NA
WP_019863488.1\|6572138_6572510_+\|transposase	transposase	NA	NA	NA	NA
WP_019863487.1\|6572740_6573433_+	OmpW family protein	NA	NA	NA	NA
WP_027047808.1\|6575065_6576541_+	NAD-dependent succinate-semialdehyde dehydrogenase	NA	NA	NA	NA
WP_019863485.1\|6576991_6579322_+	5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase	NA	NA	NA	NA
WP_020629161.1\|6580043_6580292_-	DUF982 domain-containing protein	NA	NA	NA	NA
WP_019863483.1\|6580563_6580866_-	DUF982 domain-containing protein	NA	NA	NA	NA
WP_019863481.1\|6581110_6581575_+	MucR family transcriptional regulator	A0A1P8VVG0	Erythrobacter_phage	2.3e-26	54.4
WP_080643883.1\|6581833_6582433_-	cold shock domain-containing protein	A0A1W6JNX5	Morganella_phage	6.7e-10	45.9
WP_027047806.1\|6582810_6583803_-	adenosine kinase	NA	NA	NA	NA
WP_019863479.1\|6583903_6585079_-	methionine adenosyltransferase	A0A2H4PQS6	Staphylococcus_phage	5.6e-117	56.2
WP_019863478.1\|6585136_6586474_-	serine hydroxymethyltransferase	G9I092	Helicoverpa_zea_nudivirus	1.2e-83	42.2
WP_019863476.1\|6586669_6587209_+	hypothetical protein	NA	NA	NA	NA
WP_019863475.1\|6587435_6587645_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_019863474.1\|6587802_6588000_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_019863473.1\|6588064_6588280_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_010913773.1\|6588582_6588792_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_019863472.1\|6588917_6589169_+	DUF2285 domain-containing protein	NA	NA	NA	NA
WP_032920908.1\|6589199_6589796_-	DUF2285 domain-containing protein	NA	NA	NA	NA
WP_019863470.1\|6590729_6591455_-	LuxR family transcriptional regulator	NA	NA	NA	NA
WP_019863469.1\|6592122_6593529_-	aminotransferase class III-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA
WP_019863468.1\|6593691_6594189_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA
WP_019863467.1\|6594257_6595802_-	fumarate hydratase	NA	NA	NA	NA
WP_020629160.1\|6595808_6597242_-	NAD-dependent succinate-semialdehyde dehydrogenase	NA	NA	NA	NA
WP_019863465.1\|6597439_6598366_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_019863464.1\|6598541_6599477_-	CoA ester lyase	NA	NA	NA	NA
WP_019863463.1\|6599597_6600749_-	CoA transferase	NA	NA	NA	NA
WP_019863462.1\|6600764_6602018_-	methylaspartate ammonia-lyase	NA	NA	NA	NA
WP_019863461.1\|6602247_6602658_-	M24 family metallopeptidase	NA	NA	NA	NA
WP_019863460.1\|6602873_6603182_-\|transposase	transposase	NA	NA	NA	NA
WP_080643881.1\|6603607_6603811_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_019863459.1\|6604110_6605106_-	succinylglutamate desuccinylase/aspartoacylase family protein	NA	NA	NA	NA
WP_167626459.1\|6605846_6606443_-	M24 family metallopeptidase	NA	NA	NA	NA
6605901:6605918	attL	NA	NA	NA	NA
WP_167626460.1\|6607666_6608194_-	hypothetical protein	NA	NA	NA	NA
6605901:6605918	attL	NA	NA	NA	NA
WP_019863458.1\|6609250_6610837_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_019863457.1\|6610954_6611731_+	alpha/beta hydrolase	NA	NA	NA	NA
WP_080643878.1\|6612688_6613201_-\|transposase	transposase	U5P429	Shigella_phage	3.1e-16	34.8
WP_051112864.1\|6613148_6613553_-\|transposase	IS3 family transposase	NA	NA	NA	NA
WP_080644017.1\|6613549_6613915_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_019863450.1\|6615830_6616031_-	hypothetical protein	NA	NA	NA	NA
WP_019863416.1\|6616920_6617910_-\|integrase	site-specific integrase	NA	NA	NA	NA
WP_019863417.1\|6617906_6618833_-\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_019863418.1\|6618832_6620047_-\|integrase	tyrosine-type recombinase/integrase	A0A0K2CP59	Brevibacillus_phage	5.7e-08	22.5
WP_080643877.1\|6620229_6620670_+	hypothetical protein	A0A220NQR7	Corynebacterium_phage	1.2e-16	37.7
WP_019863449.1\|6620682_6620868_+	hypothetical protein	NA	NA	NA	NA
WP_155249248.1\|6622921_6623284_+\|transposase	transposase	NA	NA	NA	NA
WP_019863444.1\|6623280_6623631_+	IS66 family insertion sequence element accessory protein TnpB	NA	NA	NA	NA
WP_019863443.1\|6623703_6625287_+\|transposase	IS66 family transposase	A0A0P0ZEB3	Stx2-converting_phage	1.2e-98	40.4
WP_019863442.1\|6625283_6625886_+	UPF0149 family protein	NA	NA	NA	NA
WP_019863440.1\|6626218_6626680_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA
WP_019863439.1\|6626903_6628067_-	aminopeptidase P family protein	NA	NA	NA	NA
6627015:6627032	attR	NA	NA	NA	NA
WP_019863438.1\|6628318_6629986_-	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	2.9e-18	31.8
6627015:6627032	attR	NA	NA	NA	NA
WP_019863437.1\|6629985_6630810_-	ABC transporter permease	NA	NA	NA	NA
WP_019863436.1\|6630820_6631780_-	ABC transporter permease	NA	NA	NA	NA
WP_019863435.1\|6631792_6633379_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_019863433.1\|6634317_6635739_-	MmgE/PrpD family protein	NA	NA	NA	NA
WP_019863432.1\|6635803_6637198_-	MmgE/PrpD family protein	NA	NA	NA	NA
WP_019863431.1\|6638700_6639936_+	ATP-grasp domain-containing protein	NA	NA	NA	NA
WP_019863429.1\|6641433_6642360_+	isopenicillin N synthase family oxygenase	NA	NA	NA	NA
WP_019863428.1\|6642559_6642979_+	DUF2267 domain-containing protein	NA	NA	NA	NA
WP_155767320.1\|6643568_6645254_+	NAD(P)-binding protein	M1PW31	Moumouvirus	1.0e-26	24.1
WP_019863424.1\|6647058_6647292_-	hypothetical protein	NA	NA	NA	NA
WP_019863422.1\|6647777_6648617_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_027047800.1\|6649873_6650617_+	methyltransferase domain-containing protein	NA	NA	NA	NA
WP_019863418.1\|6652254_6653469_+\|integrase	tyrosine-type recombinase/integrase	A0A0K2CP59	Brevibacillus_phage	5.7e-08	22.5
WP_019863417.1\|6653468_6654395_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_019863416.1\|6654391_6655381_+\|integrase	site-specific integrase	NA	NA	NA	NA
WP_019863413.1\|6656151_6657501_-	diaminobutyrate--2-oxoglutarate transaminase	NA	NA	NA	NA
WP_167626461.1\|6658693_6659134_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_080643874.1\|6659309_6659585_+	hypothetical protein	NA	NA	NA	NA
WP_019863410.1\|6659695_6661351_-	MFS transporter	NA	NA	NA	NA
WP_080643873.1\|6662291_6663089_-	polysaccharide deacetylase	NA	NA	NA	NA
WP_019863407.1\|6663329_6664733_-	aspartate aminotransferase family protein	NA	NA	NA	NA
WP_019863406.1\|6664746_6666225_-	NAD-dependent succinate-semialdehyde dehydrogenase	NA	NA	NA	NA
WP_019863405.1\|6667139_6668318_-	M24 family metallopeptidase	NA	NA	NA	NA
WP_019863402.1\|6669783_6670932_-	M20 family metallopeptidase	NA	NA	NA	NA
WP_020629152.1\|6670969_6672148_-	aminotransferase class V-fold PLP-dependent enzyme	A0A2K9L679	Tupanvirus	3.9e-09	21.6
WP_019863399.1\|6672993_6673461_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA
WP_027047798.1\|6675181_6676615_+	amidase	NA	NA	NA	NA
WP_019863397.1\|6676867_6679018_-	hypothetical protein	NA	NA	NA	NA
WP_019863396.1\|6679256_6680603_-	FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_032921540.1\|6682050_6682416_-	hypothetical protein	NA	NA	NA	NA
WP_019863382.1\|6684497_6685727_+\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_155249247.1\|6685907_6686672_-	ectoine/hydroxyectoine ABC transporter ATP-binding protein EhuA	G9BWD6	Planktothrix_phage	4.4e-30	38.5
WP_019863390.1\|6686803_6687472_-	ectoine/hydroxyectoine ABC transporter permease subunit EhuD	NA	NA	NA	NA
WP_019863389.1\|6687468_6688140_-	ectoine/hydroxyectoine ABC transporter permease subunit EhuC	NA	NA	NA	NA
WP_019863388.1\|6688198_6689071_-	ectoine/hydroxyectoine ABC transporter substrate-binding protein EhuB	NA	NA	NA	NA
WP_155249166.1\|6689592_6690444_-	alpha/beta fold hydrolase	NA	NA	NA	NA
WP_019863384.1\|6690414_6691236_+\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_019863382.1\|6692579_6693809_+\|transposase	IS110 family transposase	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP016080

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP016079

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection