CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Prophage number
NZ_CP016160	Klebsiella pneumoniae strain TH1 isolate TH1 plasmid unnamed1, complete sequence	0 crisprs	c2c9_V-U4	0
NZ_CP016159	Klebsiella pneumoniae strain TH1 chromosome, complete genome	0 crisprs	csa3,cas3,DinG,WYL,DEDDh	6
NZ_CP016161	Klebsiella pneumoniae strain TH1 isolate TH1 plasmid unnamed2, complete sequence	0 crisprs	DEDDh	2

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

10377 : 65958

Klebsiella_phage(25.86%)

integrase,capsid,holin,protease,portal,head,tail,terminase

attL 4001:4016|attR 42999:43014

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
4001:4016	attL	NA	NA	NA	NA
WP_004146386.1\|10377_11478_+\|integrase	site-specific integrase	A0A1W6JP34	Morganella_phage	2.9e-115	56.8
WP_057774832.1\|12230_12779_-	recombinase family protein	A0A286S1P7	Klebsiella_phage	2.7e-90	96.1
WP_065203276.1\|12871_13180_+	hypothetical protein	A0A286S1P0	Klebsiella_phage	1.2e-15	50.5
WP_047670084.1\|13667_14960_+	hypothetical protein	B5TAB2	Burkholderia_phage	2.4e-68	37.0
WP_065203277.1\|14960_15707_+	hypothetical protein	NA	NA	NA	NA
WP_148719046.1\|15894_19029_-	SGNH/GDSL hydrolase family protein	A0A1I9SEN3	Klebsiella_phage	4.5e-105	32.4
WP_065203278.1\|19122_22185_-	kinase	A0A286S259	Klebsiella_phage	0.0e+00	94.9
WP_004190616.1\|22181_22562_-	hypothetical protein	A0A286S2A6	Klebsiella_phage	1.5e-55	77.0
WP_064081073.1\|22571_23054_-	DUF1833 family protein	A0A286S2B1	Klebsiella_phage	5.3e-82	95.0
WP_048290435.1\|23234_23705_-	hypothetical protein	A0A286S298	Klebsiella_phage	2.3e-90	98.7
WP_064081072.1\|23704_26128_-	hypothetical protein	A0A286S1S3	Klebsiella_phage	1.9e-175	49.3
WP_064081071.1\|26169_26637_-	hypothetical protein	NA	NA	NA	NA
WP_048290427.1\|26701_26965_-	hypothetical protein	A0A286S1P2	Klebsiella_phage	1.4e-39	88.4
WP_048290424.1\|26997_27351_-\|tail	phage tail assembly protein	A0A286S1N4	Klebsiella_phage	1.3e-42	70.9
WP_048290422.1\|27392_27875_-\|tail	phage major tail protein	A0A286S1Q8	Klebsiella_phage	3.3e-52	61.2
WP_008806070.1\|27939_28302_-	DUF3168 domain-containing protein	A0A286S1R1	Klebsiella_phage	2.9e-48	77.7
WP_048290420.1\|28298_28784_-	HK97 gp10 family phage protein	A0A0U3TGT7	Pseudomonas_phage	2.0e-52	64.6
WP_008806068.1\|28776_29127_-\|head	phage head closure protein	A0A286S2A2	Klebsiella_phage	3.9e-34	62.9
WP_064081070.1\|29128_29341_-	hypothetical protein	A0A286S2A5	Klebsiella_phage	3.4e-09	58.6
WP_049009922.1\|29412_29739_-\|head,tail	phage gp6-like head-tail connector protein	S4TSQ3	Salmonella_phage	1.1e-27	60.2
WP_064081069.1\|29735_30968_-	hypothetical protein	S4TNN1	Salmonella_phage	2.5e-59	56.2
WP_048290411.1\|30964_32314_-\|portal	phage portal protein	S4TTG7	Salmonella_phage	9.3e-201	75.9
WP_048290409.1\|32519_34454_-\|capsid	phage major capsid protein	S4TNE3	Salmonella_phage	0.0e+00	93.5
WP_060853945.1\|34512_36171_-\|terminase	terminase large subunit	Q3HQS7	Burkholderia_phage	5.8e-237	70.6
WP_060853944.1\|36174_36684_-\|terminase	terminase small subunit	S4TNN3	Salmonella_phage	9.3e-53	68.0
WP_048290404.1\|36861_37230_-	HNH endonuclease	S4TTG9	Salmonella_phage	1.8e-50	79.8
WP_064081452.1\|37222_37816_-	hypothetical protein	S4TR53	Salmonella_phage	7.0e-84	70.9
WP_071925305.1\|37796_38306_-	hypothetical protein	K7PJS8	Enterobacterial_phage	2.5e-45	53.8
WP_064081451.1\|38312_39770_-	glycosyltransferase family 2 protein	K7PKP3	Enterobacterial_phage	2.8e-259	87.6
WP_060853867.1\|39773_40115_-	hypothetical protein	NA	NA	NA	NA
WP_064081467.1\|40231_40432_-	hypothetical protein	NA	NA	NA	NA
WP_064081450.1\|40430_41090_+	DUF4145 domain-containing protein	V5URE2	Shigella_phage	2.3e-56	47.7
WP_017880217.1\|41152_41398_-	DUF2560 family protein	A0A286N2R1	Klebsiella_phage	1.8e-14	54.3
WP_060853932.1\|41686_41908_-	hypothetical protein	NA	NA	NA	NA
WP_060853933.1\|42362_42647_-	hypothetical protein	G8C7W3	Escherichia_phage	2.3e-32	76.6
WP_060853934.1\|42788_43064_-	hypothetical protein	G8C7W1	Escherichia_phage	4.9e-08	39.3
42999:43014	attR	NA	NA	NA	NA
WP_060853935.1\|43066_43696_-	glycoside hydrolase family 19 protein	F1C591	Cronobacter_phage	1.1e-87	75.4
WP_015874667.1\|43695_43974_-\|holin	phage holin family protein	K7PKN9	Enterobacterial_phage	1.8e-34	76.1
WP_038808195.1\|43963_44353_-	membrane protein	K7PHB9	Enterobacterial_phage	1.2e-47	79.8
WP_071786706.1\|44860_45628_-	hypothetical protein	J7KHM1	Erwinia_phage	2.0e-107	75.9
WP_064081449.1\|45989_46787_+	DUF3800 domain-containing protein	Q19UP3	Mannheimia_phage	2.1e-67	48.6
WP_060853862.1\|46990_47821_-	antitermination protein	K7P7B9	Enterobacteria_phage	9.8e-60	47.2
WP_077265989.1\|47839_48826_-	DUF968 domain-containing protein	Q8SBE5	Shigella_phage	1.0e-92	49.5
WP_020804343.1\|48907_49729_-	KilA-N domain-containing protein	A0A0P0ZCS0	Stx2-converting_phage	4.0e-90	65.8
WP_042934062.1\|49818_50217_-	RusA family crossover junction endodeoxyribonuclease	K7PKN5	Enterobacterial_phage	1.2e-44	70.6
WP_025713403.1\|50213_50690_-\|protease	SOS-response repressor and protease LexA	U5P451	Shigella_phage	1.4e-15	61.8
WP_064081448.1\|50686_52657_-	DNA methyltransferase	H9C171	Pectobacterium_phage	8.2e-198	54.0
WP_064081447.1\|52649_54032_-	phage N-6-adenine-methyltransferase	Q8HA94	Salmonella_phage	6.8e-106	48.4
WP_008806045.1\|54019_54478_-	PerC family transcriptional regulator	NA	NA	NA	NA
WP_064081446.1\|54474_55386_-	GntR family transcriptional regulator	A0A1C9IHW0	Salmonella_phage	3.4e-53	74.5
WP_023322342.1\|55375_55555_-	DUF4222 domain-containing protein	S5M7S5	Escherichia_phage	5.6e-13	67.3
WP_064081445.1\|55727_56279_-	hypothetical protein	A0A1C9II13	Salmonella_phage	3.8e-68	69.4
WP_023343174.1\|56323_56524_-	hypothetical protein	U5P445	Shigella_phage	4.3e-22	80.0
WP_032429029.1\|56611_57271_+	LexA family transcriptional regulator	U5P0T5	Shigella_phage	1.2e-113	87.2
WP_064081444.1\|57645_58140_-	hypothetical protein	NA	NA	NA	NA
WP_020804341.1\|59079_59451_+	hypothetical protein	Q8HAA1	Salmonella_phage	7.0e-50	79.5
WP_064081443.1\|59503_60334_+	YfdQ family protein	Q8HAA2	Salmonella_phage	4.8e-123	79.5
WP_060853931.1\|60469_60997_+	hypothetical protein	A0A192Y8M4	Salmonella_phage	2.7e-63	70.3
WP_064081442.1\|60996_61197_+	hypothetical protein	NA	NA	NA	NA
WP_064081441.1\|61189_61984_+	hypothetical protein	C7BGF1	Burkholderia_phage	9.7e-65	53.3
WP_064081440.1\|61971_62175_+	hypothetical protein	A0A2R2Z313	Escherichia_phage	1.7e-29	89.6
WP_064081439.1\|62167_62407_+	hypothetical protein	S5MQM0	Escherichia_phage	6.8e-30	83.5
WP_064081438.1\|62403_62664_+	DUF4752 family protein	T1S9K2	Salmonella_phage	1.6e-29	75.6
WP_016946283.1\|62770_63097_+	hypothetical protein	NA	NA	NA	NA
WP_064081437.1\|63269_63986_+	hypothetical protein	C6ZR26	Salmonella_phage	5.2e-09	52.6
WP_016946280.1\|64119_64380_+	pyocin activator PrtN family protein	A0A1L5C290	Pseudoalteromonas_phage	1.5e-11	43.7
WP_002903398.1\|64991_65150_-	hypothetical protein	NA	NA	NA	NA
WP_004224598.1\|65442_65958_+	methylated-DNA--[protein]-cysteine S-methyltransferase	M1PFU9	Streptococcus_phage	4.6e-23	53.5

DBSCAN-SWA_2

259146 : 277438

Pseudomonas_phage(29.41%)

terminase,tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_032429442.1\|259146_259527_-	hypothetical protein	A0A286S2A6	Klebsiella_phage	1.5e-68	95.2
WP_065203281.1\|259536_260019_-	DUF1833 family protein	A0A286S2B1	Klebsiella_phage	3.3e-84	97.5
WP_032429439.1\|260005_260479_-	hypothetical protein	A0A286S298	Klebsiella_phage	1.0e-61	69.2
WP_064081419.1\|260478_263361_-\|tail	phage tail protein	A0A2H4J107	uncultured_Caudovirales_phage	1.7e-103	32.7
WP_077254381.1\|263462_263804_-	zinc ribbon domain-containing protein	S4TR42	Salmonella_phage	2.6e-06	43.3
WP_032417045.1\|263967_264450_+	hypothetical protein	A0A077K9U2	Edwardsiella_phage	1.4e-13	35.4
WP_032417044.1\|264488_264974_-	type II toxin-antitoxin system death-on-curing family toxin	NA	NA	NA	NA
WP_032429437.1\|264983_265163_-	hypothetical protein	NA	NA	NA	NA
WP_074185736.1\|265602_265797_-	hypothetical protein	NA	NA	NA	NA
WP_004226994.1\|265934_266417_-	hypothetical protein	NA	NA	NA	NA
WP_004217341.1\|266470_267643_-	Ig domain-containing protein	A0A0D4DBN5	Acinetobacter_phage	1.2e-23	27.0
WP_064081418.1\|267666_268059_-	electron transfer flavoprotein subunit beta	NA	NA	NA	NA
WP_039110587.1\|268055_268607_-	hypothetical protein	G8C7Q1	Escherichia_phage	2.3e-28	39.9
WP_004217344.1\|268608_268992_-	hypothetical protein	A0A0S2SYG4	Pseudomonas_phage	7.1e-21	45.2
WP_064081417.1\|268993_269389_-	hypothetical protein	A0A0S2SYB7	Pseudomonas_phage	1.6e-12	40.8
WP_159426866.1\|269429_269702_-	hypothetical protein	NA	NA	NA	NA
WP_004190653.1\|269710_270664_-	Ig domain-containing protein	A0A1B0VMF8	Pseudomonas_phage	5.0e-132	74.4
WP_032429435.1\|270674_271460_-	hypothetical protein	A0A1B0VMG1	Pseudomonas_phage	6.0e-67	63.9
WP_064081416.1\|271544_272657_-	hypothetical protein	I6PD76	Cronobacter_phage	2.1e-110	54.9
WP_064081415.1\|272640_274041_-	DUF4055 domain-containing protein	A0A1B0VMH0	Pseudomonas_phage	4.1e-127	53.3
WP_004190663.1\|274040_275348_-\|terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	3.6e-149	58.9
WP_064081414.1\|275325_276330_-\|terminase	terminase small subunit	Q5QF76	Pseudomonas_virus	2.0e-38	45.5
WP_004218558.1\|277192_277438_-	DUF2560 family protein	A0A286N2R1	Klebsiella_phage	4.6e-34	96.3

DBSCAN-SWA_3

287239 : 299852

Salmonella_phage(44.44%)

integrase

attL 282677:282690|attR 301360:301373

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
282677:282690	attL	NA	NA	NA	NA
WP_064081407.1\|287239_288223_-	hypothetical protein	A0A0U2RT81	Escherichia_phage	2.1e-45	55.2
WP_064081406.1\|288274_288829_-	hypothetical protein	NA	NA	NA	NA
WP_004147982.1\|288831_289053_-	Cro/Cl family transcriptional regulator	H6WRX5	Salmonella_phage	1.2e-28	75.3
WP_077265985.1\|289128_289578_+	transcriptional regulator	H6WRX4	Salmonella_phage	9.7e-38	64.6
WP_016160636.1\|290395_290590_+	DUF1482 family protein	NA	NA	NA	NA
WP_014228879.1\|290632_290977_+	transcriptional regulator	NA	NA	NA	NA
WP_064081405.1\|291118_294172_+	exodeoxyribonuclease	H6WRX1	Salmonella_phage	1.4e-281	56.0
WP_022631173.1\|294184_295294_+	recombinase RecT	H6WRX0	Salmonella_phage	1.0e-184	86.7
WP_022631172.1\|295334_295574_+	DUF4060 family protein	M9P0E0	Enterobacteria_phage	6.8e-22	67.5
WP_064081404.1\|295794_297012_-\|integrase	site-specific integrase	K7PGY1	Enterobacteria_phage	5.6e-120	51.6
WP_004151901.1\|297158_298049_+	peptide ABC transporter permease SapC	NA	NA	NA	NA
WP_004140266.1\|298048_299041_+	peptide ABC transporter ATP-binding protein SapD	G9BWD6	Planktothrix_phage	3.0e-07	27.2
WP_004140269.1\|299042_299852_+	peptide ABC transporter ATP-binding protein SapF	A0A2H4PQG7	Staphylococcus_phage	2.1e-14	28.9
301360:301373	attR	NA	NA	NA	NA

DBSCAN-SWA_4

708249 : 717712

Brazilian_cedratvirus(16.67%)

protease,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004179158.1\|708249_709971_+	cysteine/glutathione ABC transporter ATP-binding protein/permease CydC	A0A2R8FG22	Brazilian_cedratvirus	1.5e-14	34.3
WP_004141853.1\|709997_710717_+\|tRNA	leucyl/phenylalanyl-tRNA--protein transferase	NA	NA	NA	NA
WP_001040187.1\|711070_711289_+	translation initiation factor IF-1	NA	NA	NA	NA
WP_002896522.1\|711408_713688_-\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	1.6e-165	42.0
WP_002896520.1\|713718_714036_-\|protease	ATP-dependent Clp protease adapter ClpS	A0A1B1IT64	uncultured_Mediterranean_phage	2.0e-13	45.7
WP_002896516.1\|714361_714583_+	cold shock-like protein CspD	A0A2H4N7Y6	Lake_Baikal_phage	1.3e-16	61.2
WP_004150848.1\|714659_716600_-	macrolide ABC transporter ATP-binding protein/permease MacB	G9BWD6	Planktothrix_phage	1.9e-37	40.5
WP_002896440.1\|716596_717712_-	macrolide transporter subunit MacA	A0A140XAI1	Dickeya_phage	1.3e-06	52.7

DBSCAN-SWA_5

4303347 : 4384854

Klebsiella_phage(45.65%)

integrase,tRNA,capsid,tail,holin,portal,head,terminase

attL 4300036:4300053|attR 4378443:4378460

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
4300036:4300053	attL	NA	NA	NA	NA
WP_048324946.1\|4303347_4304382_-\|integrase	tyrosine-type recombinase/integrase	K7PLZ2	Enterobacterial_phage	1.6e-123	64.0
WP_071925326.1\|4304381_4304612_-	DUF4224 domain-containing protein	NA	NA	NA	NA
WP_040188683.1\|4304678_4304870_-	hypothetical protein	A0A2R2Z313	Escherichia_phage	7.3e-27	88.9
WP_042345976.1\|4304866_4305652_-	hypothetical protein	A4JX52	Burkholderia_virus	1.3e-61	51.0
WP_064081162.1\|4305651_4305951_-	hypothetical protein	K7PJS4	Enterobacterial_phage	6.5e-14	47.6
WP_040188688.1\|4306566_4307223_-	helix-turn-helix domain-containing protein	K7PLZ5	Enterobacterial_phage	1.5e-108	88.1
WP_064081161.1\|4307322_4307520_+	hypothetical protein	K7PHB1	Enterobacterial_phage	1.6e-24	87.7
WP_064081160.1\|4307554_4308007_+	hypothetical protein	K7PJS5	Enterobacterial_phage	1.5e-67	88.5
WP_071925327.1\|4308244_4308451_+	DUF4222 domain-containing protein	S5M7S5	Escherichia_phage	2.4e-15	69.1
WP_064081158.1\|4308413_4309328_+	transcriptional regulator	H2DE83	Erwinia_phage	3.1e-30	59.6
WP_064081157.1\|4309324_4310134_+	Dam family site-specific DNA-(adenine-N6)-methyltransferase	A0A1C9II58	Salmonella_phage	2.7e-110	69.3
WP_064081156.1\|4310158_4311139_+	DUF968 domain-containing protein	A0A291AWV9	Escherichia_phage	7.1e-134	66.9
WP_040196270.1\|4311157_4311499_+	antitermination protein	A0A0P0ZCW0	Stx2-converting_phage	7.8e-56	86.7
WP_040196267.1\|4311521_4312061_-	hypothetical protein	NA	NA	NA	NA
WP_064081155.1\|4312047_4312977_-	hypothetical protein	NA	NA	NA	NA
WP_017880269.1\|4313854_4314070_+\|holin	holin	A5LH82	Enterobacteria_phage	7.9e-30	87.3
WP_065203293.1\|4314069_4314567_+	lysozyme	A0A1V0E5Q7	Salmonella_phage	1.4e-77	85.2
WP_016160650.1\|4314563_4314914_+	hypothetical protein	R9TPM9	Aeromonas_phage	7.9e-11	38.1
WP_148719039.1\|4315857_4316064_+	hypothetical protein	NA	NA	NA	NA
WP_017880264.1\|4316047_4316410_+	HNH endonuclease	Q6UAS2	Klebsiella_phage	1.8e-58	84.2
WP_023159881.1\|4316361_4316685_+	hypothetical protein	NA	NA	NA	NA
WP_077265978.1\|4316681_4317113_+	hypothetical protein	Q6UAS0	Klebsiella_phage	3.7e-42	62.0
WP_012542168.1\|4317362_4317797_+\|terminase	phage terminase small subunit P27 family	A0A1J0GV10	Halomonas_phage	9.4e-30	61.9
WP_017880262.1\|4319501_4319681_+	hypothetical protein	Q6UAX9	Klebsiella_phage	5.2e-11	59.6
WP_064081153.1\|4319680_4320940_+\|portal	phage portal protein	Q6UAX8	Klebsiella_phage	6.2e-223	89.8
WP_064081152.1\|4320976_4321897_+	S49 family peptidase	Q6UAX7	Klebsiella_phage	6.9e-147	87.3
WP_017898995.1\|4321974_4323261_+\|capsid	phage major capsid protein	Q6UAX6	Klebsiella_phage	2.0e-216	89.5
WP_014907814.1\|4323319_4323580_+	hypothetical protein	Q6UAX5	Klebsiella_phage	1.5e-22	63.9
WP_020317538.1\|4323560_4323878_+\|head,tail	phage gp6-like head-tail connector protein	Q6UAX4	Klebsiella_phage	1.5e-45	89.8
WP_017880259.1\|4323874_4324213_+\|head,tail	head-tail adaptor protein	Q6UAX3	Klebsiella_phage	2.1e-53	90.2
WP_017880258.1\|4324193_4324583_+	hypothetical protein	Q6UAX2	Klebsiella_phage	9.6e-58	86.0
WP_017880257.1\|4324579_4324981_+	hypothetical protein	Q6UAX1	Klebsiella_phage	1.1e-61	93.2
WP_014228913.1\|4325012_4325474_+\|tail	major tail shaft subunit	Q6UAX0	Klebsiella_phage	7.8e-67	83.7
WP_014228914.1\|4325531_4325897_+\|tail	phage tail protein	Q6UAW8	Klebsiella_phage	1.6e-51	89.3
WP_064081455.1\|4326129_4329465_+\|tail	phage tail tape measure protein	Q6UAW7	Klebsiella_phage	0.0e+00	88.2
WP_017880254.1\|4329464_4329803_+\|tail	phage tail protein	Q6UAW6	Klebsiella_phage	6.4e-58	89.3
WP_023289191.1\|4329799_4330555_+\|tail	phage minor tail protein L	Q6UAW5	Klebsiella_phage	2.7e-125	80.9
WP_017880253.1\|4330556_4331267_+	C40 family peptidase	Q6UAW4	Klebsiella_phage	8.5e-137	90.3
WP_031280393.1\|4331302_4331638_+	hypothetical protein	Q6UAW3	Klebsiella_phage	2.1e-21	44.1
WP_032432808.1\|4331689_4332295_+\|tail	tail assembly protein	Q6UAW2	Klebsiella_phage	2.9e-77	71.8
WP_064081151.1\|4332357_4344891_+	DUF1983 domain-containing protein	Q6UAW1	Klebsiella_phage	0.0e+00	46.6
WP_017880251.1\|4344951_4346391_+\|tail	tail fiber domain-containing protein	A0A0P0IDN1	Klebsiella_phage	7.8e-105	56.7
WP_064081150.1\|4346741_4347092_+	As(III)-sensing metalloregulatory transcriptional repressor ArsR	A0A2H4J145	uncultured_Caudovirales_phage	4.8e-24	51.9
WP_064081149.1\|4347139_4347502_+	arsenite efflux transporter metallochaperone ArsD	NA	NA	NA	NA
WP_017880250.1\|4347519_4349271_+	arsenite efflux transporter ATPase subunit ArsA	NA	NA	NA	NA
WP_017880249.1\|4349318_4350608_+	arsenite efflux transporter membrane subunit ArsB	A0A2H4J144	uncultured_Caudovirales_phage	6.6e-172	74.0
WP_017880248.1\|4350620_4351046_+	glutaredoxin-dependent arsenate reductase	A0A2H4J8T1	uncultured_Caudovirales_phage	1.7e-52	72.9
WP_064081148.1\|4351080_4351617_-	N-acetyltransferase	NA	NA	NA	NA
WP_064081147.1\|4351741_4353499_-	arsenical pump-driving ATPase	NA	NA	NA	NA
WP_017880244.1\|4353519_4353882_-	arsenic metallochaperone ArsD family protein	NA	NA	NA	NA
WP_017880243.1\|4353957_4354503_-	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA
WP_031280392.1\|4354511_4355225_-	arsenical resistance protein ArsH	A0A2H4J5V6	uncultured_Caudovirales_phage	7.3e-96	71.7
WP_064081146.1\|4355214_4355550_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_159426867.1\|4355932_4356244_-	hypothetical protein	NA	NA	NA	NA
WP_048969316.1\|4356236_4357118_+	dihydrodipicolinate synthase family protein	NA	NA	NA	NA
WP_004141106.1\|4357216_4357885_+	YecA family protein	NA	NA	NA	NA
WP_004151453.1\|4357909_4359121_-	tyrosine transporter TyrP	NA	NA	NA	NA
WP_004175410.1\|4359312_4359552_+	YecH family protein	NA	NA	NA	NA
WP_004141101.1\|4359587_4360085_-	non-heme ferritin	NA	NA	NA	NA
WP_020801895.1\|4360142_4360322_-	hypothetical protein	NA	NA	NA	NA
WP_002911528.1\|4360493_4361132_+	RpiB/LacA/LacB family sugar-phosphate isomerase	NA	NA	NA	NA
WP_064081145.1\|4361181_4362603_-	MFS transporter	NA	NA	NA	NA
WP_002911524.1\|4362753_4363005_+	DUF2766 domain-containing protein	NA	NA	NA	NA
WP_002911522.1\|4363042_4364554_-	MFS transporter	NA	NA	NA	NA
WP_004148869.1\|4364619_4364778_+	succinate dehydrogenase	NA	NA	NA	NA
WP_004175413.1\|4364848_4365358_-	non-heme ferritin-like protein	NA	NA	NA	NA
WP_160540596.1\|4365789_4365888_-	hypothetical protein	NA	NA	NA	NA
WP_002911518.1\|4366249_4367230_+	arabinose ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_002911516.1\|4367292_4368807_+	L-arabinose ABC transporter ATP-binding protein AraG	A0A2R8FG22	Brazilian_cedratvirus	6.9e-11	30.0
WP_002911507.1\|4368821_4369802_+	L-arabinose ABC transporter permease AraH	NA	NA	NA	NA
WP_002911505.1\|4369963_4370752_+	trehalose-phosphatase	NA	NA	NA	NA
WP_004175414.1\|4370726_4372151_+	alpha,alpha-trehalose-phosphate synthase	NA	NA	NA	NA
WP_002911500.1\|4372174_4372603_-	universal stress protein UspC	NA	NA	NA	NA
WP_048290673.1\|4372956_4374540_+	MFS transporter	NA	NA	NA	NA
WP_002911497.1\|4374544_4375684_+	glycoside hydrolase family 105 protein	NA	NA	NA	NA
WP_004151452.1\|4375745_4377479_-\|tRNA	arginine--tRNA ligase	A0A2K9L6Z2	Tupanvirus	1.4e-87	33.8
WP_064081144.1\|4377714_4378284_+	VOC family protein	NA	NA	NA	NA
WP_044245909.1\|4378360_4379104_+	copper homeostasis protein CutC	NA	NA	NA	NA
4378443:4378460	attR	NA	NA	NA	NA
WP_064081143.1\|4379185_4380190_-\|tRNA	tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB	NA	NA	NA	NA
WP_002911486.1\|4380186_4380930_-	carboxy-S-adenosyl-L-methionine synthase CmoA	F5B419	Synechococcus_phage	4.1e-25	30.0
WP_023157964.1\|4380969_4381365_-	hypothetical protein	NA	NA	NA	NA
WP_004200337.1\|4381417_4382236_-	DUF72 domain-containing protein	Q859D1	Escherichia_coli_phage	1.1e-60	82.7
WP_004145564.1\|4382232_4382799_-	hydrolase	NA	NA	NA	NA
WP_002911479.1\|4383066_4384854_+\|tRNA	aspartate--tRNA ligase	A0A2K9L3L6	Tupanvirus	1.3e-11	27.2

DBSCAN-SWA_6

5144541 : 5153973

Escherichia_phage(87.5%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_160525746.1\|5144541_5146176_+	DUF4981 domain-containing protein	L0N6M2	Herpes_simplex_virus	9.0e-182	55.7
WP_004176258.1\|5146230_5147496_+	MFS transporter	NA	NA	NA	NA
WP_001620097.1\|5147526_5148615_-	AAA family ATPase	A0A077SLJ9	Escherichia_phage	8.0e-211	100.0
WP_004176262.1\|5148701_5148962_-	hypothetical protein	A0A077SK33	Escherichia_phage	5.4e-41	98.8
WP_001620095.1\|5149259_5150120_+	class A broad-spectrum beta-lactamase SHV-1	A0A077SL40	Escherichia_phage	4.4e-156	99.7
WP_002210513.1\|5150158_5150920_-	DeoR/GlpR transcriptional regulator	A0A077SK06	Escherichia_phage	1.9e-134	100.0
WP_002903955.1\|5151180_5152083_+	NAD(P)-dependent oxidoreductase	A0A077SLF7	Escherichia_phage	2.6e-159	99.7
WP_023283677.1\|5152094_5153360_+	four-carbon acid sugar kinase family protein	A0A077SLJ7	Escherichia_phage	4.3e-232	99.3
WP_004892174.1\|5153352_5153973_+	aldolase	A0A077SK32	Escherichia_phage	1.8e-114	99.5

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP016161

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

7 : 65182

Salmonella_phage(94.67%)

protease,terminase,portal,tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_065203299.1\|7_994_+	regulator	J9Q7Z3	Salmonella_phage	3.9e-140	87.3
WP_048331505.1\|1054_1999_+	exonuclease	J9Q7S6	Salmonella_phage	1.4e-171	93.0
WP_064081547.1\|1998_2265_+	hypothetical protein	J9Q7G8	Salmonella_phage	6.6e-34	83.0
WP_162493098.1\|2294_3347_+	recombinase	J9Q736	Salmonella_phage	1.5e-190	95.1
WP_064081549.1\|3440_3644_+	hypothetical protein	J9Q6J0	Salmonella_phage	1.2e-14	69.2
WP_064081550.1\|3643_4474_+\|protease	serine protease	J9Q7Z4	Salmonella_phage	9.6e-124	94.9
WP_021313782.1\|5522_5699_+	hypothetical protein	J9Q7G9	Salmonella_phage	6.1e-12	68.8
WP_074423468.1\|5782_6397_+	hypothetical protein	J9Q7Z5	Salmonella_phage	3.0e-37	67.6
WP_014342074.1\|6396_6609_+	hypothetical protein	J9Q7S8	Salmonella_phage	4.3e-28	80.0
WP_162493096.1\|7060_8278_-	RepB family plasmid replication initiator protein	J9Q7H0	Salmonella_phage	1.3e-73	47.3
WP_042935022.1\|8478_9123_+	hypothetical protein	J9Q739	Salmonella_phage	4.9e-99	80.7
WP_032440511.1\|9198_9693_+	GNAT family N-acetyltransferase	J9Q6J3	Salmonella_phage	1.6e-65	72.6
WP_072196417.1\|9799_9883_-	hypothetical protein	NA	NA	NA	NA
WP_021313776.1\|9881_10967_+	exonuclease	J9Q7S9	Salmonella_phage	1.1e-183	84.8
WP_072196416.1\|10966_11200_+	hypothetical protein	J9Q7H1	Salmonella_phage	4.4e-18	66.1
WP_160333948.1\|12753_13113_+	hypothetical protein	J9Q741	Salmonella_phage	2.4e-55	95.0
WP_072196935.1\|13138_13849_+	hypothetical protein	J9Q6J5	Salmonella_phage	6.6e-73	59.7
WP_021313773.1\|13858_14428_+	hypothetical protein	J9Q7Z7	Salmonella_phage	1.1e-94	89.9
WP_060611498.1\|14503_16807_+	ribonucleoside-diphosphate reductase subunit alpha	J9Q7T0	Salmonella_phage	0.0e+00	90.9
WP_014342181.1\|16937_18080_+	ribonucleotide-diphosphate reductase subunit beta	J9Q7H3	Salmonella_phage	9.0e-213	95.8
WP_023279499.1\|18157_19033_+	nucleoside triphosphate pyrophosphohydrolase family protein	J9Q742	Salmonella_phage	1.2e-140	85.1
WP_023279500.1\|19226_20330_+	thymidylate synthase	J9Q6J6	Salmonella_phage	6.7e-181	80.1
WP_072196937.1\|20349_20745_+	hypothetical protein	J9Q7Z8	Salmonella_phage	5.2e-51	75.6
WP_072196936.1\|20747_21218_+	dihydrofolate reductase	J9Q7T1	Salmonella_phage	5.4e-71	79.4
WP_023279503.1\|21217_21862_+	AAA family ATPase	J9Q7H4	Salmonella_phage	4.7e-94	77.6
WP_023279504.1\|21925_22345_+	hypothetical protein	J9Q743	Salmonella_phage	6.5e-52	74.1
WP_023279505.1\|22354_22912_+	3'-5' exonuclease	J9Q6J8	Salmonella_phage	1.4e-86	84.2
WP_023279506.1\|23037_23871_+	hypothetical protein	J9Q7Z9	Salmonella_phage	5.1e-64	56.4
WP_023279507.1\|24055_24649_+	phage N-6-adenine-methyltransferase	J9Q7T2	Salmonella_phage	5.9e-99	85.3
WP_023279508.1\|24846_25080_+	hypothetical protein	J9Q7H5	Salmonella_phage	7.8e-31	84.0
WP_019704565.1\|25652_26240_+	ribonuclease HI	J9Q745	Salmonella_phage	3.4e-91	80.2
WP_019704567.1\|27237_27663_+	tellurite/colicin resistance protein	Q71TK7	Escherichia_phage	9.8e-56	80.9
WP_060611495.1\|27662_27818_+	DUF3927 family protein	H6WZJ7	Escherichia_phage	2.8e-05	61.2
WP_021313149.1\|27945_28524_+	hypothetical protein	J9Q7H6	Salmonella_phage	3.0e-55	57.0
WP_060611493.1\|28652_30338_+	DUF4942 domain-containing protein	J9Q747	Salmonella_phage	0.0e+00	91.3
WP_110226589.1\|30426_31128_+	hypothetical protein	J9Q6K2	Salmonella_phage	1.2e-79	70.7
WP_047066264.1\|31243_31885_+	HD domain-containing protein	J9Q7H7	Salmonella_phage	2.0e-97	85.0
WP_060611488.1\|31881_32418_+	hypothetical protein	J9Q748	Salmonella_phage	2.2e-76	76.0
WP_060611486.1\|32414_32783_+	hypothetical protein	F1C5B5	Cronobacter_phage	9.2e-10	55.4
WP_060611484.1\|32779_33037_+	hypothetical protein	NA	NA	NA	NA
WP_060611483.1\|33167_33431_+	hypothetical protein	J9Q7T5	Salmonella_phage	4.4e-30	72.7
WP_001554382.1\|33611_34040_+	S-(hydroxymethyl)glutathione synthase	NA	NA	NA	NA
WP_060611481.1\|34238_34556_+	hypothetical protein	J9Q750	Salmonella_phage	7.1e-43	74.3
WP_071925343.1\|34594_34894_-	hypothetical protein	NA	NA	NA	NA
WP_072198667.1\|35728_35851_-	hypothetical protein	NA	NA	NA	NA
WP_019704577.1\|36480_36699_+	hypothetical protein	J9Q6K7	Salmonella_phage	2.9e-27	81.9
WP_023279445.1\|36711_36924_+	hypothetical protein	J9Q804	Salmonella_phage	4.4e-25	77.9
WP_162493099.1\|37072_37372_+	hypothetical protein	J9Q7T7	Salmonella_phage	5.5e-29	68.7
WP_072196390.1\|37479_37899_+	hypothetical protein	NA	NA	NA	NA
WP_014342151.1\|38109_38307_+	hypothetical protein	J9Q753	Salmonella_phage	2.9e-26	81.5
WP_049594351.1\|38512_38995_+	hypothetical protein	J9Q805	Salmonella_phage	2.3e-69	76.9
WP_004109904.1\|39587_39791_-	hypothetical protein	J9Q7I3	Salmonella_phage	4.1e-28	95.5
WP_004109892.1\|39841_40492_-	hypothetical protein	J9Q754	Salmonella_phage	8.4e-107	91.7
WP_123827665.1\|40816_41116_-	hypothetical protein	NA	NA	NA	NA
WP_014342147.1\|41125_41656_-	transcriptional regulator	J9Q6L0	Salmonella_phage	3.5e-71	84.5
WP_072274521.1\|41814_42249_+	hypothetical protein	A0A1V0E8D6	Vibrio_phage	9.5e-14	37.0
WP_004109887.1\|42299_42575_-	hypothetical protein	J9Q7T9	Salmonella_phage	3.1e-26	68.1
WP_023279440.1\|42577_44137_-	DEAD/DEAH box helicase	J9Q7I4	Salmonella_phage	3.1e-280	93.1
WP_023279439.1\|44196_44901_+	ParB N-terminal domain-containing protein	J9Q756	Salmonella_phage	1.4e-107	89.3
WP_014342142.1\|44900_45569_+	ParB N-terminal domain-containing protein	J9Q6L1	Salmonella_phage	1.9e-106	91.4
WP_023279437.1\|45565_46207_+	ATP-binding cassette domain-containing protein	J9Q807	Salmonella_phage	2.3e-109	97.2
WP_023279436.1\|46196_46748_+	hypothetical protein	NA	NA	NA	NA
WP_004109872.1\|46744_47635_+	hypothetical protein	J9Q7I6	Salmonella_phage	5.4e-165	97.0
WP_004109869.1\|47644_47911_+	hypothetical protein	J9Q757	Salmonella_phage	1.3e-37	90.9
WP_004109866.1\|48086_48728_+	DNA-binding protein	J9Q6D4	Salmonella_phage	5.0e-96	88.2
WP_004109863.1\|48730_49987_+\|terminase	terminase	J9Q7Y2	Salmonella_phage	9.4e-248	97.4
WP_019704587.1\|50019_51594_+\|portal	phage portal protein	J9Q7R1	Salmonella_phage	1.3e-275	88.7
WP_023279435.1\|51616_52516_+	hypothetical protein	J9Q7F4	Salmonella_phage	6.1e-124	82.6
WP_004109857.1\|52542_53421_+	hypothetical protein	J9Q710	Salmonella_phage	4.7e-153	94.2
WP_023279434.1\|53499_53928_+	Ig domain-containing protein	J9Q6D6	Salmonella_phage	1.8e-28	70.6
WP_014342133.1\|53903_54092_-	hypothetical protein	NA	NA	NA	NA
WP_160552724.1\|54029_54410_+	hypothetical protein	J9Q7Y3	Salmonella_phage	3.4e-52	81.7
WP_060611525.1\|54409_55243_+	hypothetical protein	J9Q7R2	Salmonella_phage	4.1e-130	83.0
WP_004109848.1\|55340_55685_+	hypothetical protein	J9Q7F6	Salmonella_phage	7.4e-54	92.1
WP_021313126.1\|55675_56149_+	hypothetical protein	J9Q711	Salmonella_phage	1.9e-76	93.6
WP_047066294.1\|56150_56543_+	hypothetical protein	J9Q6D8	Salmonella_phage	2.0e-47	68.3
WP_023279430.1\|56610_57357_+	Ig domain-containing protein	J9Q7Y4	Salmonella_phage	8.1e-106	82.6
WP_004109835.1\|57418_57736_+	hypothetical protein	J9Q7R3	Salmonella_phage	1.8e-46	93.3
WP_014342129.1\|57861_58086_+	hypothetical protein	J9Q7F7	Salmonella_phage	2.0e-31	93.2
WP_064081534.1\|58093_62629_+	tape measure protein	J9Q712	Salmonella_phage	0.0e+00	69.9
WP_004109823.1\|62672_63008_+\|tail	tail protein	J9Q6E1	Salmonella_phage	3.4e-51	84.5
WP_064081535.1\|63094_63793_+\|tail	phage minor tail protein L	J9Q7Y5	Salmonella_phage	1.5e-122	87.4
WP_004109817.1\|63785_64583_+\|tail	tail protein	J9Q7R4	Salmonella_phage	5.4e-140	85.3
WP_019704527.1\|64570_65182_+\|tail	tail assembly protein	J9Q7F8	Salmonella_phage	1.1e-76	72.1

DBSCAN-SWA_2

74714 : 109215

Salmonella_phage(70.37%)

integrase,tail

attL 72112:72128|attR 107108:107124

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
72112:72128	attL	NA	NA	NA	NA
WP_162493100.1\|74714_77336_+	DUF1983 domain-containing protein	A0A0P0IKE4	Klebsiella_phage	5.0e-33	41.4
WP_050597328.1\|77388_78834_+\|tail	tail fiber domain-containing protein	A0A0H4TGH1	Klebsiella_phage	8.0e-41	38.6
WP_004109805.1\|78924_79248_+	hypothetical protein	J9Q6E7	Salmonella_phage	2.3e-49	95.3
WP_021313119.1\|79261_79954_+	structural protein P5	J9Q7Y7	Salmonella_phage	4.1e-120	89.6
WP_021313118.1\|79956_80208_+	hypothetical protein	J9Q7R6	Salmonella_phage	5.8e-24	72.3
WP_072271794.1\|80200_80344_+	hypothetical protein	J9Q7G2	Salmonella_phage	2.0e-13	68.1
WP_064081551.1\|80404_80962_-	hypothetical protein	A0A2H4J5U3	uncultured_Caudovirales_phage	3.6e-34	43.2
WP_021313115.1\|81281_81947_+	AAA family ATPase	J9Q7R7	Salmonella_phage	2.9e-102	83.7
WP_072196454.1\|81952_82309_+	hypothetical protein	J9Q7G3	Salmonella_phage	1.2e-43	97.9
WP_064081537.1\|82352_84065_+	hypothetical protein	NA	NA	NA	NA
WP_023279420.1\|84242_84968_+	hypothetical protein	J9Q7R8	Salmonella_phage	2.5e-128	88.8
WP_162493097.1\|86509_87634_+	DNA primase	J9Q720	Salmonella_phage	2.4e-202	91.6
WP_064081539.1\|87676_88843_-	hypothetical protein	NA	NA	NA	NA
WP_040170962.1\|89131_89920_+	hypothetical protein	J9Q7Z0	Salmonella_phage	3.6e-72	51.5
WP_064081540.1\|89999_90467_+	hypothetical protein	J9Q7R9	Salmonella_phage	7.0e-47	62.7
WP_064081541.1\|90466_91789_+	DNA ligase	J9Q7G5	Salmonella_phage	1.0e-228	86.1
WP_072241499.1\|91800_91965_+	hypothetical protein	J9Q729	Salmonella_phage	8.7e-13	72.5
WP_023279477.1\|91948_92164_+	hypothetical protein	J9Q6I3	Salmonella_phage	8.5e-24	78.6
WP_047066207.1\|92309_92609_+	hypothetical protein	J9Q7S1	Salmonella_phage	6.7e-27	65.6
WP_064081542.1\|93842_94757_-	hypothetical protein	NA	NA	NA	NA
WP_071925344.1\|94880_95693_+	phosphate starvation-inducible protein PhoH	W8D063	Erwinia_phage	4.7e-91	66.1
WP_040170138.1\|95702_96089_+	phage family protein	Q716B1	Shigella_phage	4.9e-46	72.0
WP_064081543.1\|96085_96331_+	GrxA family glutaredoxin	A0A2I7SAE2	Vibrio_phage	3.5e-13	46.2
WP_048269887.1\|96425_97043_+	hypothetical protein	NA	NA	NA	NA
WP_060853801.1\|97052_97463_+	toxin YafO	NA	NA	NA	NA
WP_052455483.1\|97526_97886_-	hypothetical protein	NA	NA	NA	NA
WP_064081544.1\|98240_99341_+\|integrase	site-specific integrase	A0A1P8DTG6	Proteus_phage	1.6e-17	28.4
WP_014342091.1\|99335_99716_-	transcriptional regulator	NA	NA	NA	NA
WP_014342090.1\|99989_100202_+	hypothetical protein	NA	NA	NA	NA
WP_064081545.1\|100318_102598_+	porphyrin biosynthesis protein	J9Q7G6	Salmonella_phage	2.7e-245	63.3
WP_019704545.1\|102694_103927_+	AAA domain-containing protein	J9Q733	Salmonella_phage	1.3e-212	86.6
WP_064081546.1\|104107_107626_+	DNA polymerase III subunit alpha	J9Q7Z2	Salmonella_phage	0.0e+00	93.2
107108:107124	attR	NA	NA	NA	NA
WP_023279487.1\|107640_108066_+	hypothetical protein	J9Q7S4	Salmonella_phage	2.8e-58	82.3
WP_023279488.1\|108218_108434_-	cold shock protein CspG	A0A1W6JNX5	Morganella_phage	4.5e-25	80.0
WP_014342081.1\|108783_109215_+	hypothetical protein	J9Q6I8	Salmonella_phage	1.4e-65	91.6

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP016159

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP016161

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection