CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP016188	Mycobacteroides abscessus strain FLAC006 chromosome, complete genome	1 crisprs	cas3,csa3,DinG,DEDDh,cas4,WYL	0	0	4	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP016188_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP016188_1

4590277-4590371

Orphan

Consensus_repeat	Method
GCCAGCCCGCTGAACCCCAACAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP016188_1

>merge|NZ_CP016188|1|4590277-4590371|CRISPRCasFinder
GCCAGCCCGCTGAACCCCAACAACCCCGCCAACCCGGCCAGCCCGCTGAACCCGAACAACCCGGCCAATCCCGCCAGCCCGCTGAACCCGAACAA

>NZ_CP016188|1|1|4590277-4590371|CRISPRCasFinder
GCCAGCCCGCTGAACCCCAACAA	CCCCGCCAACCCGGCCAGCCCGCTGAACCCGAACAACCCGGCCAATCCC
GCCAGCCCGCTGAACCCGAACAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP016188.1\|WP_005071723.1\|4583585_4584473_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP016188.1\|WP_005071725.1\|4584591_4586862_-\|5-methyltetrahydropteroyltriglutamate---homocysteine-S-methyltransferase	unknown	unknown	gnl\|CDD\|235367
NZ_CP016188.1\|WP_005063839.1\|4595936_4596527_-\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224228
NZ_CP016188.1\|WP_017205868.1\|4580875_4581997_+\|bifunctional-2-methylcitrate-synthase/citrate-synthase	unknown	unknown	gnl\|CDD\|237590
NZ_CP016188.1\|WP_005063830.1\|4587707_4588310_+\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224228
NZ_CP016188.1\|WP_005120026.1\|4598381_4599446_+\|galactose-1-phosphate-uridylyltransferase	unknown	unknown	gnl\|CDD\|238341
NZ_CP016188.1\|WP_005101757.1\|4592257_4593106_+\|DUF2510-domain-containing-protein	unknown	unknown	gnl\|CDD\|376704
NZ_CP016188.1\|WP_005071727.1\|4587298_4587718_+\|PaaI-family-thioesterase	unknown	unknown	gnl\|CDD\|239527
NZ_CP016188.1\|WP_005063840.1\|4596649_4597903_+\|NADH:flavin-oxidoreductase/NADH-oxidase-family-protein	unknown	unknown	gnl\|CDD\|240084
NZ_CP016188.1\|WP_005138254.1\|4594866_4595940_+\|diacylglycerol-kinase	unknown	unknown	gnl\|CDD\|226326
NZ_CP016188.1\|WP_005071732.1\|4591582_4592248_+\|glyoxalase	unknown	unknown	gnl\|CDD\|372667
NZ_CP016188.1\|WP_005138247.1\|4579961_4580879_+\|methylisocitrate-lyase	unknown	unknown	gnl\|CDD\|131370
NZ_CP016188.1\|WP_016343627.1\|4593110_4593971_-\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|224332
NZ_CP016188.1\|WP_025982628.1\|4578459_4579965_+\|MmgE/PrpD-family-protein	unknown	unknown	gnl\|CDD\|224990
NZ_CP016188.1\|WP_074292112.1\|4597833_4598316_+\|nitroreductase-family-deazaflavin-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|281995
NZ_CP016188.1\|WP_017205870.1\|4588353_4589943_-\|AMP-binding-protein	unknown	unknown	gnl\|CDD\|235731
NZ_CP016188.1\|WP_005103161.1\|4590433_4591531_-\|LLM-class-flavin-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|274934
NZ_CP016188.1\|WP_005071735.1\|4594062_4594854_+\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|181131
NZ_CP016188.1\|WP_005063818.1\|4576920_4578342_-\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|226322
NZ_CP016188.1\|WP_079262855.1\|4582068_4582749_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP016188.1\|WP_005071725.1\|4584591_4586862_-\|5-methyltetrahydropteroyltriglutamate---homocysteine-S-methyltransferase	gnl\|CDD\|235367	PRK05222, PRK05222, 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase; Provisional.	0
NZ_CP016188.1\|WP_005063839.1\|4595936_4596527_-\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	3.72256e-07
NZ_CP016188.1\|WP_005071727.1\|4587298_4587718_+\|PaaI-family-thioesterase	gnl\|CDD\|239527	cd03443, PaaI_thioesterase, PaaI_thioesterase is a tetrameric acyl-CoA thioesterase with a hot dog fold and one of several proteins responsible for phenylacetic acid (PA) degradation in bacteria. Although orthologs of PaaI exist in archaea and eukaryotes, their function has not been determined. Sequence similarity between PaaI, E. coli medium chain acyl-CoA thioesterase II, and human thioesterase III suggests they all belong to the same thioesterase superfamily. The conserved fold present in these thioesterases is referred to as an asymmetric hot dog fold, similar to those of 4-hydroxybenzoyl-CoA thioesterase (4HBT) and the beta-hydroxydecanoyl-ACP dehydratases (FabA/FabZ).	2.31723e-22
NZ_CP016188.1\|WP_005101757.1\|4592257_4593106_+\|DUF2510-domain-containing-protein	gnl\|CDD\|376704	pfam01987, AIM24, Mitochondrial biogenesis AIM24. In eukaryotes, this domain is involved in mitochondrial biogenesis. Its function in prokaryotes in unknown.	2.65198e-41
NZ_CP016188.1\|WP_005063830.1\|4587707_4588310_+\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	1.63043e-07
NZ_CP016188.1\|WP_005120026.1\|4598381_4599446_+\|galactose-1-phosphate-uridylyltransferase	gnl\|CDD\|238341	cd00608, GalT, Galactose-1-phosphate uridyl transferase (GalT): This enzyme plays a key role in galactose metabolism by catalysing the transfer of a uridine 5'-phosphoryl group from UDP-galactose 1-phosphate. The structure of E.coli GalT reveals that the enzyme contains two identical subunits. It also demonstrates that the active site is formed by amino acid residues from both subunits of the dimer.	1.66003e-113
NZ_CP016188.1\|WP_017205868.1\|4580875_4581997_+\|bifunctional-2-methylcitrate-synthase/citrate-synthase	gnl\|CDD\|237590	PRK14033, PRK14033, bifunctional 2-methylcitrate synthase/citrate synthase.	0
NZ_CP016188.1\|WP_005063840.1\|4596649_4597903_+\|NADH:flavin-oxidoreductase/NADH-oxidase-family-protein	gnl\|CDD\|240084	cd04733, OYE_like_2_FMN, Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.	9.42384e-165
NZ_CP016188.1\|WP_005138254.1\|4594866_4595940_+\|diacylglycerol-kinase	gnl\|CDD\|226326	COG3804, COG3804, Uncharacterized conserved protein related to dihydrodipicolinate reductase [Function unknown].	4.32106e-115
NZ_CP016188.1\|WP_005071732.1\|4591582_4592248_+\|glyoxalase	gnl\|CDD\|372667	pfam13669, Glyoxalase_4, Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily.	1.98773e-08
NZ_CP016188.1\|WP_005138247.1\|4579961_4580879_+\|methylisocitrate-lyase	gnl\|CDD\|131370	TIGR02317, Methylisocitrate_lyase, methylisocitrate lyase. Members of this family are methylisocitrate lyase, also called (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate pyruvate-lyase. This enzyme acts in propionate metabolism. It cleaves a carbon-carbon bond to convert 2-methylisocitrate to pyruvate plus succinate. Some members of this family have been annotated, incorrectly it seems, as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus.	1.72028e-143
NZ_CP016188.1\|WP_016343627.1\|4593110_4593971_-\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|224332	COG1414, IclR, Transcriptional regulator [Transcription].	1.90611e-09
NZ_CP016188.1\|WP_005103161.1\|4590433_4591531_-\|LLM-class-flavin-dependent-oxidoreductase	gnl\|CDD\|274934	TIGR04036, family_protein, putative luciferase-like monooxygenase, FMN-dependent, CE1758 family. This tightly conserved subfamily of the bacterial luciferase-like monooxygenase (LLM) family, with members showing > 60 % pairwise sequence identity, includes proteins from both species with and species without the ability to make coenzyme F420. Therefore, the like cofactor is FMN rather than F420. The presence of three members in Kineococcus radiotolerans SRS30216 and two in Saccharopolyspora erythraea NRRL 2338 suggest closely related (subfamily) rather than exactly conserved (equivalog) function. Gene neighborhoods around members are not conserved. [Unknown function, Enzymes of unknown specificity].	2.09098e-76
NZ_CP016188.1\|WP_074292112.1\|4597833_4598316_+\|nitroreductase-family-deazaflavin-dependent-oxidoreductase	gnl\|CDD\|281995	pfam04075, F420H2_quin_red, F420H(2)-dependent quinone reductase. This family of proteins is found in the genera Mycobacterium and Streptomyces. Member protein Rv3547 has been characterized as a deazaflavin-dependent nitroreductase. Rv1558 is an F420H(2)-dependent quinone reductase involved in oxidative stress protection.	4.00501e-11
NZ_CP016188.1\|WP_017205870.1\|4588353_4589943_-\|AMP-binding-protein	gnl\|CDD\|235731	PRK06188, PRK06188, acyl-CoA synthetase; Validated.	0
NZ_CP016188.1\|WP_005071735.1\|4594062_4594854_+\|SDR-family-oxidoreductase	gnl\|CDD\|181131	PRK07814, PRK07814, SDR family oxidoreductase.	1.62564e-153
NZ_CP016188.1\|WP_005063818.1\|4576920_4578342_-\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|226322	COG3800, COG3800, Predicted transcriptional regulator [General function prediction only].	2.25337e-158
NZ_CP016188.1\|WP_025982628.1\|4578459_4579965_+\|MmgE/PrpD-family-protein	gnl\|CDD\|224990	COG2079, PrpD, Uncharacterized protein involved in propionate catabolism [General function prediction only].	3.70942e-146

>NZ_CP016188.1|WP_017205870.1|4588353_4589943_-|AMP-binding-protein
MPDPFDPLHGSINSGHLLVSALKRNRDAPALVLGDVTLTGAQMADEISKYIQAFIELVPDPTDGQGMLALNRPEVLLVIGAGQLLGTRRTALHPLGSLDDHAYVLADAKITTLVIDPTPQFVERAAALVAKVPTLTRVLTLGPVPVELAEVGQDLVAAAAGFAARPLTPINLSPDHINGLTYTGGTTGKPKGVIGTSQSILTMTQIQLAEWEWPERPKFLMCTPLSHAGAAFFMPTLMKGGSMVVLPKFDAGAVLAAIEEHQITATMLVPSMIYALLDHPDSRTRDLSSLQTVYYGASAVNPVRLAEAIERFGPIFAQYFGQSEAPMVISYLAKGDHDAKRLSSCGRPSAFLRTALLDENDRPVKQGEPGEICVAGPLVAGGYWGLPEQTAETFKNGWLRTGDVAREDEDGFWFIVDRTKDMIVTGGFNVFPREVEDVVAEHPSVAQVGVIGVPDEKWGEAVTAIVVLRSDASSDEEAVALMTSEIQSAVKERKGSVQSPKHVIVADSLPLTALGKLDKKALRQKYTTV
>NZ_CP016188.1|WP_005063830.1|4587707_4588310_+|TetR/AcrR-family-transcriptional-regulator
MGRKPQYSADDILDAALGLVAAGGPSAATATAIGRVLGAPSGSIYHRFPSRDELMARLWLRSIARYQDGVLAALALPDADDALAAAIDHAFDWTASNHNEALLLLQYEKADLVAHWPDTLATELKTLNSRVRKTLREYTDRRYGEVTTERIDKVMFALIDMPYAAVRRHLPDKGEPAPWLREFVHASAHALLARACPNKP
>NZ_CP016188.1|WP_005071727.1|4587298_4587718_+|PaaI-family-thioesterase
MITLDQAQQVLDAQPFSRLLGAAITRVDERGIQLSLQIRDELRQQSGFIHGGVLSYLADNAITYACGLGLGADIVTSGYTIEYVAPARDGARLVADASLVSAGRTKALGRCEISVEDHDGTATLVAVAQGTSMVRRSGT
>NZ_CP016188.1|WP_005071725.1|4584591_4586862_-|5-methyltetrahydropteroyltriglutamate---homocysteine-S-methyltransferase
MTTQPLKATTLGSARIGPRRELKRATESYWAGRISRVELEDVAAGLRRDNWTALAAAGLDSVPVNTFSYYDQVLDTAVLLGALPPRVAGIADDLDRYFAAARGNTDVTPLEMTKWFDTNYHYLVPEIGPDTQFTLNPAKLFGELKEAQALDVPARPVVVGPITFLALSKSVDGASAPIERLDEVVALYEQLLVQLAEAGVGWVQIDEPVLVTDILPNGPELAERVYGRLGTVADRPAILVASYFGELGAALPALARTPIEAIAVDLVYGSASAVASVPELAGKTLVAGVVDGRNIWRTNLQSALGTLASLLGSAESVAVSTSCSTLHVPYSLEPETELDDQLRSWLAFADEKVKEVVVLARALGEGRDAVAAEIAASNAAAESRRTDPRLNNGQIRTRLDAVLADGVSRGDAAERRRRQDERLRLPALPTTTIGSFPQTVEIRKARQALTRGEIDDVEYVRQMRAEVADVIALQEKLGLDVLVHGEPERNDMVQYFAEQLDGFFATQNGWVQSYGSRCVRPPILYGDVARRKPMTVEWATYAQSLTQKHVKGMLTGPVTILAWSFVRDDQPLGDTANQIALAIRDETVDLQNAGIAIIQVDEPALRELLPLRNSEKQAYLDWAVGAFRLSTSGVSDATQIHTHLCYSEFGEVIGAIADLDADVTSIEAARSHMEVLDDLNAIGFSNSVGPGVYDIHSPRVPSTEEMATSLREALKAVPAQRLWVNPDCGLKTRKVDEVTSSLANLVAAAASVRADA
>NZ_CP016188.1|WP_005071723.1|4583585_4584473_-|hypothetical-protein
MNTVALEMVPPNVDGGLDRAADELRKLRQFSAEFGIDRRIAHVMIPSMIVEDGDRPLEMKPKLDVVDYWSIIRAELPAVRGLCTQVTSFSDETSLRGRLTDLTDAGMDGVIFVGVPRTMNDGDGAGIPPTDALSKFDDIVQNRGAILIPTRAGEQGRFSFKCDKGANFAMTQLLYSDAVVGFLHEFAHTSDHRPEVLLSFGFVPKLESKIGLIDWLIQDPGNEAVAREQDFVKALAAREPGERRPQLVDLYKRVVDGVAGLGFPLSIHFEAPYGLARPAFETFAEMLEYWSPAVS
>NZ_CP016188.1|WP_079262855.1|4582068_4582749_-|hypothetical-protein
MASAAAVDWDEGSEIIRFPYGCAGWDPALGDPAQRLVTLWATWHKGQNWPRLLGVVEELYDVSAVSYRDESDCIRCRPSSFQYRSVELATRWPEESSRGEPGRRVITGCVVGLRVISVVEPADADIQARQEERDRARRTLDLFGPPGVFGAVIPSRGDRVTVDLADPRLSVNDTRGYAGVVTGIAGQVSRAVHSPDGFYTGLLDINSEAPPPDELFIQLLCDRKPE
>NZ_CP016188.1|WP_017205868.1|4580875_4581997_+|bifunctional-2-methylcitrate-synthase/citrate-synthase
MTISTPTIHKGLAGVVVDTTAISKVVPETNSLTYRGYPVQDLAVQCSFEQVAYLLWHGELPNEGELALFNQRERAQRRLDRSLMALLAKLPETCHPMDVVRTAISYLGAEDPSEDDNTPDANYAKSLRMFAVLPTIVASDMRRRRGLDPIQPHSHLGYSANFLRMCFGEIPDPAIVKAFEQSMILYAEHSFNASTFAARVVTSTQSDIYSAVTAAIGALKGSLHGGANEAVMHDMIEIGDASKASEWLQSKRSRKEKIMGFGHRVYKNGDSRVPTMRAALEDVARARDGGQWLEIYKVLESEMDAATGIKPNLDFPTGPAYYLMGFDIPCFTPIFVMSRITGWTAHIMEQAAANALIRPLSEYSGKPQRTLAC
>NZ_CP016188.1|WP_005138247.1|4579961_4580879_+|methylisocitrate-lyase
MSTLLASATDAATKRAAFRQGLSSGELLRLPGAFSPLVAKLIEEIGFEGVYVSGAVLSADLALPDIGLTTLTEVSARGRQIASVTDLPTLIDADTGFGEPMSAARTVAVLEDSGVAGLHLEDQVNPKRCGHLDGKAVVETAEMVRRLHAAVSARRDPNFVICARTDAAGIEGLPAAIDRARAYADAGADLIFTEALTDIGEFEKFRAAVDIPLLANMTEFGKSELVTADRLREVGYNVVIYPVTTLRLAMYAVEQGLHEINSAGTQSGLLEQMQHRSRLYELLHYAEYNRFDTEIFNFSLDGGQQ
>NZ_CP016188.1|WP_025982628.1|4578459_4579965_+|MmgE/PrpD-family-protein
MHVHSVRTRRSAEAFPRDQHLAWKIAEIASDPVAVPADTAAMVINRVIDNAAVSAASVIRRPVTVARRQAQAHPAAPGAHVFGIGGGYSAEWAAWANGVAVRELDFHDTFLAADYSHPGDNIPPLVAVAQQLGIGGDDLIRGLATAYETQINLTRGICLHEHKIDHVAHLGPAVAAGLGTMLKLDTETIYQAIGQALHLTTATRQSRKGLISSWKAYAPAWAGKVAIEAVDRAMRGEGAPSPIWEGEDGVIAWLLGGPEKLYEVPLPGPGEEKRAILDSYTKEHSAEYQSQAPIDLARRMRERIGDLEQIATIVLHTSHHTHVVIGTGSNDPQKFDPDASRETLDHSVMYIFAVALEDGTWHHERSYAPERAHRPETIELWNKISTIEDPEWTRRYHSTDPDEKAFGCKAVVTLKNGEVIADELAIADAHPLGARPFARDNYVNKFTVLSDGVIAPREQERFLSVAQGLADLKPGSLGALNPLVDAVVLDKAPTTPEGIFK
>NZ_CP016188.1|WP_005063818.1|4576920_4578342_-|helix-turn-helix-transcriptional-regulator
MSRPFAGARLRRLREERGLTQAALARVLDLSTSYVNQLENDTRPVTVAVLLRLTERFDLSPHYFSPDSDARLVADLGEIFTEAAVGEVSDLQLEELVARMPSVGQTLVGMHRRLRDVTAELESYRATENAETIGDSVREPLRPMPFEEVRDFFYDHKNYLGELDTAAEDLFEHYGLHVGGLDIQLATVLKQDLGIAVAVDKAGAPSDSSKRRFDAAAGVLRIAHWLTPGQRAFQMATQLALVTQTETMAAILAGADQLSPEAIGVARIGLANYFAGAFLLPYKQFHHAAESSRYDVDILARQFEVGHETVCHRLSTLQRPSMRGVPFILVRTDRAGNISKRQSATAFHFSRVGGNCPLWVVHEAFSNPGQFVTQVAEMPDGRTYFWVARTSSTSTGGFLSTPKSFAIGLGCDIAHAHRLVYSTGIAIDDPSTAVPIGPGCKVCVRESCAQRAFPYIGRSVHVDEDASSGLPYT
>NZ_CP016188.1|WP_005103161.1|4590433_4591531_-|LLM-class-flavin-dependent-oxidoreductase
MRFQLLDIVFHLPNPATRALAPAAERLNRVIETAVLAENLGFDSFAVGERHAGDVLSSAPTVLLGAVAAATDRILLSTGVTVLSLLDPVRAAEDFATIDQLSRGRLEIVIGKGNEDRQYPLMGLDIAKQYEYLQENYELLRRLLREEHVDWVGAHRHPLADATTLPRPYDGPFRIWHGSATSTFAVELAAKWGDPIVTANALQPKENYRVLIDRYRELYAHHGHDPAQLYVGAGSGGLYLADTTEQAIAQYRPIYEARLAQMAKLKAHPQAVGKFPSFESIEDAADRGPVLAGSPERVAEKILDWHEAFGHEFQSISLSPEADFEEQKDTLRRFAEEVVPLVRAEVKSTLWGPLDTRRAKGFTAV
>NZ_CP016188.1|WP_005071732.1|4591582_4592248_+|glyoxalase
MITELDSVLLDVPNLGEAKAAYSRLFNSSAPHPQLHLGLPEWASHPGMLFRVDHLDCAARTVARRGLALTVHGDLATGASNGVTLGLSGQPPAAPQPDADSCRIDHLVLFSPNRDRIIATLCGRLGFDLRLDRLQSWGAHQLFFRGAGLVVEVVLRDDDPSGPDSLWGIAWRTADIEASHARLSGAGATLGDIRNGHKPGTRVVTVKDPALAVPTILIEQR
>NZ_CP016188.1|WP_005101757.1|4592257_4593106_+|DUF2510-domain-containing-protein
MTTPNSGSWQPDPDGRYEFRWHDGQRWTDQVAHQGSVSTAPLGGAATQPAAPDQPAGNQFSGISGDLVDGRFSENEAKPISNQNAKLLRVRLGEPFLARQGSMVAYQGNVDFAFEGGGAAKFLKKALTGEGLPLMRCSGQGDVFLAERAFDVHLLNLNNAGLSISGKNVLAFSAGLNWNIERVRGASVVTGGLFNTTLRGTGWVALTTDGPPVVLNAAEAPTFADTNAVVAWSSNLQTQLKTSFKAGALIGRGSGEALQVSFQGQGFVIVQPSEGIPVVTAG
>NZ_CP016188.1|WP_016343627.1|4593110_4593971_-|helix-turn-helix-domain-containing-protein
MPASSPPTARVVRIVEMLAAAMQPKTVSEIAASTGISRATATAVVNELEAAGWVARDDELRYRIGASLPRAVDTSMPREAQQLLARIAAEAQAGVTVSCISAKALTVVAKAQAGRRAVTGFAVGQSIPLAFPAGSAVMPWRAAEEREQWLGTAAGLSARSGQRLLQQVSDCGYVVYRPDHDDTGMVDLLSDLLGSVGSEVMEAALRERLLRQLSRLTSRPYSPDELTSDEVLPISYLAAPIFDGAEARYELQLGPLLPRATRVVREALIATLMRGARELSGVLGDR
>NZ_CP016188.1|WP_005071735.1|4594062_4594854_+|SDR-family-oxidoreductase
MILDRFKLDGNVAVVTGAGRGLGAAIAEAFAQAGADVLIASRTESQLREVAEKVQAAGRQAEVVVADLSDTEASAALAQKAVDRFGRLDVVVNNVGGTMPKPFLDTTNDDLAEAFSFNVLSGHALLRAAVPHLLKSDNASVINITSTMGRLPGRAFLGYCTAKGALAHYTRTAAMDLSPRIRVNGIAPGSILTSALEVVAGNDEMRNTLEQNTPLHRLGDPDDIAAAAVYLASPAGSFLTGKVLEIDGGLIAPNLDIPLPDLA
>NZ_CP016188.1|WP_005138254.1|4594866_4595940_+|diacylglycerol-kinase
MTKTRVAVWGTGNVGQHALAGVITDPSMELVGVWVSGSNKAGKDAGALAGLDILTGITATTDAAQILALRPDCVVYTAMTDNRLMEALKDLTDLLSAGINVAASAPVFLQYPWGVLPENMLTPIENAAREGNSSIFVGGIDPGFANDLLPLALMGTCQRIDQVRCIEIVDYATYDSATVMFDVMGFGKPMEETPMLLQPGVLSLAWGSVVRQLAAGLGVELDEVTEAYEKLPAPEDFDISSGHIPAGTMAALHFEVRGIKDGRAVTVLEHFTRLREDLAPNWPQPAHEGGTYRVQITGEPSYLLDLGSFSARGDHNYANLIATAMRVVNAVPAVVAAEAGIRTTLDLPLITGKGRAV
>NZ_CP016188.1|WP_005063839.1|4595936_4596527_-|TetR/AcrR-family-transcriptional-regulator
MSARDTLIASVTGLVRRRGVAGTGLNALLEDSGVSRRTIYLNFPGGKQELVAEATRLAGNELTAIIKAAGDDVDPARGIQLFIELWKAQLAETEMQAGCPVVAAVLGRTEAPEAAAVAADAFESWRKILIDRLARYDVDGETARSLASTMIAAIEGAVIMSIAAQSTEALDDVGQRLVELVRLYVPAGAKPNPHVD
>NZ_CP016188.1|WP_005063840.1|4596649_4597903_+|NADH:flavin-oxidoreductase/NADH-oxidase-family-protein
MPDIHDPLPLANGQVLRNRLMKSALSEALGNAEQGPDHRLVQLFSRWGAGGYGLIVTGNVMVDHNHLGEPGNVVIEDDRHLEGLSRWAKATKDGGGLIWMQVNHPGRQANPLATKHQPVAPSAVRMSVPGWQAPRELTDVEIEDIIDRYARTAVVADTAGFDGVQIHGAHGYLVAQFLSPNTNRRTDRWGGDAQRRMRFVLEIVRRTKAAVSPGFAVAIKLNSADFQRGGFTEEESRGVIAALAAEGIDLIEISGGTYESPAMEGRPVVVSTSTQAREAYFLEYATTARAVAGDVPLAVTGGFRTTAAMNEAIESGACDVIGLGRPTTVNPEAAIELLSTRRDRLTVPDAALPLPARLAATARAKAFLSAHELQWHGTQMHRLGAGSDPDPSIGPWITALRLLKNNGVEAFRKRRSS
>NZ_CP016188.1|WP_074292112.1|4597833_4598316_+|nitroreductase-family-deazaflavin-dependent-oxidoreductase
MDHGLAAPQEQRRRSIPKKEKFMTDKTLRKFRRERAMGRYLLNPAVGALAKLGVRTALASELETTGRRTGQLRRVPVSVQFDSTGAWVICQHGTRSGWGSNIAANPNVRIRQGNRWRTGTAQFRPDDDVVARGRGFGVIGARVVKALETTPISVRIDFTD
>NZ_CP016188.1|WP_005120026.1|4598381_4599446_+|galactose-1-phosphate-uridylyltransferase
MWRTRRELADGREILYFDSTPTERAAVDRRDLPPVSTQSQIRFDPLLGDWVTLASHRQTRTFLPPTDLCPLCPSTPERPTEIPEHAYEVVAFENRFPSLSLHAQAATPPAGAGFGRCEVLCFTSEHDTSFAQLEPRRARLIVDVWAERTKELSAIDGVKQVYCFENHGEEIGVTLAHPHGQIYAYPFITAKTARVLSNVDTHRKQHGTNLFGEILAAERATGTRVVTANDEWTAFVPSFARWPYEVSLYPHRQVADIPDLDDAARSAFAELYLDVLQRFACRFDNPMPYIAGWNQAPTVASGAIRDNWWLHLQVFSIRRAPGKLKYLAGSESGMGAFISDTTPEQVAAELRDVM

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1013234 : 1029738

Mycobacterium_phage(50.0%)

integrase

attL 1011679:1011693|attR 1028929:1028943

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1011679:1011693	attL	NA	NA	NA	NA
WP_079851360.1\|1013234_1014557_-\|integrase	tyrosine-type recombinase/integrase	G9FH48	Rhodococcus_phage	2.7e-67	37.8
WP_154021766.1\|1014591_1015599_-	DUF732 domain-containing protein	NA	NA	NA	NA
WP_065203911.1\|1015682_1015889_-	DUF3263 domain-containing protein	A0A0A7RXU7	Mycobacterium_phage	1.0e-10	49.2
WP_079851372.1\|1015885_1016224_-	hypothetical protein	G8I4Q3	Mycobacterium_phage	3.8e-26	57.4
WP_065203913.1\|1016517_1018155_+	restriction endonuclease subunit M	G8I4P9	Mycobacterium_phage	1.2e-266	80.6
WP_154021767.1\|1018156_1019320_-	hypothetical protein	A0A2D1GG66	Gordonia_phage	5.5e-08	70.7
WP_154021768.1\|1019443_1019686_+	helix-turn-helix domain-containing protein	A0A2D1GGB3	Gordonia_phage	5.4e-19	65.8
WP_065203916.1\|1019682_1020483_+	hypothetical protein	A0A2P1N364	Mycobacterium_phage	1.6e-51	45.3
WP_065203917.1\|1020479_1020692_+	hypothetical protein	NA	NA	NA	NA
WP_065203918.1\|1020800_1021157_+	hypothetical protein	NA	NA	NA	NA
WP_154021769.1\|1021621_1022143_+	hypothetical protein	NA	NA	NA	NA
WP_065203920.1\|1022139_1023150_+	hypothetical protein	A0A1D8EXT9	Mycobacterium_phage	1.9e-150	81.6
WP_065203921.1\|1023294_1024866_+	DNA methyltransferase	A0A142KB20	Gordonia_phage	1.2e-178	58.3
WP_065203922.1\|1024862_1025894_+	site-specific DNA-methyltransferase	A0A2H4GSZ1	Mycobacterium_phage	6.2e-104	58.1
WP_065203923.1\|1025890_1026238_+	hypothetical protein	A0A220NS56	Mycobacterium_phage	2.4e-12	38.5
WP_079851361.1\|1026234_1026954_+	DNA-binding protein	A0A159B6E8	Gordonia_phage	7.5e-24	35.6
WP_065203925.1\|1027120_1027540_+	hypothetical protein	Q854T1	Mycobacterium_virus	1.1e-67	82.7
WP_065203926.1\|1028523_1028940_+	hypothetical protein	NA	NA	NA	NA
WP_065203927.1\|1029115_1029454_+	hypothetical protein	NA	NA	NA	NA
1028929:1028943	attR	NA	NA	NA	NA
WP_065203928.1\|1029450_1029738_+	hypothetical protein	B5U3D3	Mycobacterium_virus	1.3e-35	74.4

DBSCAN-SWA_2

1034072 : 1062152

Mycobacterium_phage(87.5%)

terminase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_079851373.1\|1034072_1034324_+	hypothetical protein	A0A2H4PD32	Mycobacterium_phage	2.8e-18	60.2
WP_065203936.1\|1034323_1034530_+	hypothetical protein	NA	NA	NA	NA
WP_065203937.1\|1034534_1034870_+	MFS transporter	A0A2H4PFU6	Mycobacterium_phage	1.1e-09	42.7
WP_065203938.1\|1034866_1035388_+	hypothetical protein	E0YQ72	Mycobacterium_phage	3.3e-05	38.6
WP_065203939.1\|1035365_1035740_+	hypothetical protein	A0A0F6YQ88	Mycobacterium_phage	7.3e-39	60.9
WP_065203940.1\|1035736_1036189_+	AAA family ATPase	A0A0F6SJL7	Mycobacterium_phage	1.3e-50	64.7
WP_065203941.1\|1036349_1036751_+	hypothetical protein	A0A249XTE6	Mycobacterium_phage	5.0e-17	43.3
WP_079851363.1\|1036719_1038372_+\|terminase	terminase	A0A2L1ISR4	Mycobacterium_phage	6.8e-238	75.0
WP_079851364.1\|1038386_1039829_+	hypothetical protein	A0A143FQB8	Mycobacterium_phage	2.0e-169	72.0
WP_079851374.1\|1040251_1041193_+	hypothetical protein	A0A142K9Z2	Gordonia_phage	1.5e-32	33.4
WP_065203942.1\|1041196_1041574_+	DUF2190 domain-containing protein	W8EH90	Mycobacterium_phage	2.0e-44	80.0
WP_065203943.1\|1041588_1042494_+	hypothetical protein	A0A2K9VEV5	Mycobacterium_phage	2.8e-140	81.7
WP_065203944.1\|1042539_1042995_+	hypothetical protein	NA	NA	NA	NA
WP_065203945.1\|1042999_1043362_+	hypothetical protein	A0A218M9J6	Mycobacterium_phage	9.0e-34	59.2
WP_065204038.1\|1043364_1043772_+	hypothetical protein	NA	NA	NA	NA
WP_065203946.1\|1043771_1044131_+	hypothetical protein	NA	NA	NA	NA
WP_065203947.1\|1044130_1044541_+	hypothetical protein	NA	NA	NA	NA
WP_065203948.1\|1044634_1045720_+	hypothetical protein	A0A2H4PED2	Mycobacterium_phage	4.1e-58	44.6
WP_065204039.1\|1045813_1046260_+	hypothetical protein	A0A2P1JR39	Mycobacterium_phage	5.1e-23	40.1
WP_079851365.1\|1046372_1046684_+	hypothetical protein	A0A2P1JR40	Mycobacterium_phage	3.5e-26	61.0
WP_065203950.1\|1046701_1050280_+	hypothetical protein	Q854Y3	Mycobacterium_virus	6.5e-201	42.8
WP_065203951.1\|1050281_1051994_+	hypothetical protein	A0A142K810	Mycobacterium_phage	7.1e-222	64.1
WP_065203952.1\|1052037_1053741_+	hypothetical protein	A0A097EYM8	Mycobacterium_phage	2.1e-266	76.4
WP_065203953.1\|1053756_1054596_+	hypothetical protein	W0LK92	Mycobacterium_phage	6.4e-75	52.7
WP_065203954.1\|1054583_1057145_+	hypothetical protein	A0A2P1A0Q0	Gordonia_phage	4.7e-44	32.1
WP_065203955.1\|1057332_1058487_+	hypothetical protein	A0A0F6WEF1	Mycobacterium_phage	6.7e-06	32.9
WP_065203956.1\|1058501_1058885_+	hypothetical protein	A0A222ZQF4	Mycobacterium_phage	1.0e-40	68.3
WP_065203957.1\|1058895_1059240_+	hypothetical protein	A0A0F6WEV7	Mycobacterium_phage	6.3e-13	36.4
WP_154021771.1\|1059221_1059383_+	hypothetical protein	NA	NA	NA	NA
WP_065203958.1\|1059376_1059676_+	hypothetical protein	NA	NA	NA	NA
WP_065204040.1\|1061342_1062152_+	PE-PPE domain-containing protein	A0A2P1N3V2	Mycobacterium_phage	1.2e-70	52.4

DBSCAN-SWA_3

4076084 : 4085578

Burkholderia_phage(25.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_005077959.1\|4076084_4077209_-	acyltransferase	A9YX16	Burkholderia_phage	1.2e-20	29.0
WP_016887507.1\|4077205_4078474_-	glycosyltransferase	A0A1L3KK54	Shahe_endorna-like_virus	3.3e-06	40.3
WP_012296730.1\|4078523_4079330_-	macrocin O-methyltransferase	A0A2R8FDY2	Brazilian_cedratvirus	4.9e-56	52.6
WP_074249704.1\|4079540_4080233_-	class I SAM-dependent methyltransferase	Q98VI8	Paramecium_bursaria_Chlorella_virus	4.9e-12	30.2
WP_065204012.1\|4080465_4081596_-	acyltransferase	A9YX16	Burkholderia_phage	1.8e-16	27.5
WP_065204013.1\|4081763_4082825_-	NAD-dependent epimerase/dehydratase family protein	A0A0E3IB24	Synechococcus_phage	2.4e-18	25.8
WP_032692260.1\|4082988_4084248_-	glycosyltransferase	A0A1L3KK54	Shahe_endorna-like_virus	1.6e-05	39.2
WP_065204014.1\|4084711_4085578_+	glucose-1-phosphate thymidylyltransferase RfbA	H9NC64	Sphingomonas_phage	3.6e-89	57.1

DBSCAN-SWA_4

4777983 : 4786355

Mycobacterium_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_079262859.1\|4777983_4779453_+	serine hydrolase	A0A1J0GRK9	Mycobacterium_phage	1.2e-12	28.5
WP_005082750.1\|4779580_4780393_+	DUF1906 domain-containing protein	A0A2D1GEF2	Gordonia_phage	3.1e-50	49.1
WP_005138308.1\|4780441_4781638_-	LysM peptidoglycan-binding domain-containing protein	A0A1W6JL93	Lactococcus_phage	2.6e-05	47.3
WP_005072022.1\|4782067_4782886_+	N-acetylmuramoyl-L-alanine amidase	A0A2D1GEV9	Mycobacterium_phage	3.3e-68	55.0
WP_005100873.1\|4783676_4784126_+	hypothetical protein	NA	NA	NA	NA
WP_005072025.1\|4784146_4785598_+	HAMP domain-containing histidine kinase	Q8QKV4	Ectocarpus_siliculosus_virus	2.9e-06	33.6
WP_005064635.1\|4785677_4786355_-	response regulator transcription factor	W8CYM9	Bacillus_phage	4.4e-26	31.4

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage