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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP016190 Mycobacteroides abscessus strain FLAC028 chromosome, complete genome 3 crisprs cas3,csa3,DinG,DEDDh,cas4,WYL 0 4 6 0

Results visualization

1. NZ_CP016190
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP016190_1 806342-806472 Orphan NA
2 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP016190_2 819659-820112 Orphan I-E
7 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP016190_3 4478513-4478610 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP016190_1 1.1|806368|28|NZ_CP016190|CRISPRCasFinder 806368-806395 28 NZ_CP035424 Leisingera sp. NJS204 plasmid unnamed7, complete sequence 38441-38468 5 0.821
NZ_CP016190_1 1.1|806368|28|NZ_CP016190|CRISPRCasFinder 806368-806395 28 NZ_CP038236 Leisingera sp. NJS201 plasmid unnamed2, complete sequence 9923-9950 5 0.821
NZ_CP016190_1 1.2|806422|25|NZ_CP016190|CRISPRCasFinder 806422-806446 25 CP030179 Xanthomonas citri pv. punicae strain LMG 859 plasmid unnamed, complete sequence 20822-20846 5 0.8
NZ_CP016190_1 1.2|806422|25|NZ_CP016190|CRISPRCasFinder 806422-806446 25 CP030179 Xanthomonas citri pv. punicae strain LMG 859 plasmid unnamed, complete sequence 143079-143103 5 0.8
NZ_CP016190_1 1.2|806422|25|NZ_CP016190|CRISPRCasFinder 806422-806446 25 CP030160 Xanthomonas citri pv. punicae strain BD0022 plasmid unnamed, complete sequence 72056-72080 5 0.8
NZ_CP016190_1 1.2|806422|25|NZ_CP016190|CRISPRCasFinder 806422-806446 25 CP030167 Xanthomonas citri pv. punicae strain LMG7504 plasmid unnamed1, complete sequence 71484-71508 5 0.8
NZ_CP016190_1 1.2|806422|25|NZ_CP016190|CRISPRCasFinder 806422-806446 25 CP030170 Xanthomonas citri pv. punicae strain BD0025 plasmid unnamed, complete sequence 3602-3626 5 0.8
NZ_CP016190_1 1.2|806422|25|NZ_CP016190|CRISPRCasFinder 806422-806446 25 CP030162 Xanthomonas citri pv. punicae strain BD0023 plasmid unnamed, complete sequence 52587-52611 5 0.8
NZ_CP016190_1 1.2|806422|25|NZ_CP016190|CRISPRCasFinder 806422-806446 25 NZ_CP030165 Xanthomonas citri pv. punicae strain LMG7439 plasmid unnamed, complete sequence 75057-75081 5 0.8
NZ_CP016190_1 1.1|806368|28|NZ_CP016190|CRISPRCasFinder 806368-806395 28 JQ809663 Stenotrophomonas phage Smp131, complete genome 10531-10558 6 0.786
NZ_CP016190_1 1.1|806368|28|NZ_CP016190|CRISPRCasFinder 806368-806395 28 NZ_CP021083 Deinococcus ficus strain CC-FR2-10 plasmid pDFI2, complete sequence 41688-41715 6 0.786
NZ_CP016190_2 2.2|819745|36|NZ_CP016190|CRISPRCasFinder,CRT 819745-819780 36 NZ_AP022593 Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence 3785897-3785932 7 0.806
NZ_CP016190_2 2.7|820054|34|NZ_CP016190|CRT 820054-820087 34 NZ_CP051182 Thalassobius gelatinovorus strain NEB572 plasmid pAge77, complete sequence 30119-30152 8 0.765
NZ_CP016190_2 2.7|820054|34|NZ_CP016190|CRT 820054-820087 34 NZ_CP044550 Hydrogenophaga sp. BPS33 plasmid pBPS33-1, complete sequence 247075-247108 9 0.735
NZ_CP016190_2 2.7|820054|34|NZ_CP016190|CRT 820054-820087 34 NZ_CP014942 Rhodococcus sp. BH4 plasmid, complete sequence 538608-538641 10 0.706
NZ_CP016190_2 2.7|820054|34|NZ_CP016190|CRT 820054-820087 34 NZ_CP021767 Ralstonia solanacearum strain RS 489 plasmid unnamed, complete sequence 1500317-1500350 10 0.706
NZ_CP016190_2 2.7|820054|34|NZ_CP016190|CRT 820054-820087 34 NZ_CP042916 Rhodococcus qingshengii strain RL1 plasmid unnamed1, complete sequence 130398-130431 11 0.676

1. spacer 1.1|806368|28|NZ_CP016190|CRISPRCasFinder matches to NZ_CP035424 (Leisingera sp. NJS204 plasmid unnamed7, complete sequence) position: , mismatch: 5, identity: 0.821

ccagca-gcgcctcgcaccgcagaagcct	CRISPR spacer
-catcgtgcgcctcgcaccgcaggagccc	Protospacer
 ** *. ****************.****.

2. spacer 1.1|806368|28|NZ_CP016190|CRISPRCasFinder matches to NZ_CP038236 (Leisingera sp. NJS201 plasmid unnamed2, complete sequence) position: , mismatch: 5, identity: 0.821

ccagca-gcgcctcgcaccgcagaagcct	CRISPR spacer
-catcgtgcgcctcgcaccgcaggagccc	Protospacer
 ** *. ****************.****.

3. spacer 1.2|806422|25|NZ_CP016190|CRISPRCasFinder matches to CP030179 (Xanthomonas citri pv. punicae strain LMG 859 plasmid unnamed, complete sequence) position: , mismatch: 5, identity: 0.8

gttgttccccacagcgccgagccgc	CRISPR spacer
accgttccccaccgcgccgagccgt	Protospacer
...********* ***********.

4. spacer 1.2|806422|25|NZ_CP016190|CRISPRCasFinder matches to CP030179 (Xanthomonas citri pv. punicae strain LMG 859 plasmid unnamed, complete sequence) position: , mismatch: 5, identity: 0.8

gttgttccccacagcgccgagccgc	CRISPR spacer
accgttccccaccgcgccgagccgt	Protospacer
...********* ***********.

5. spacer 1.2|806422|25|NZ_CP016190|CRISPRCasFinder matches to CP030160 (Xanthomonas citri pv. punicae strain BD0022 plasmid unnamed, complete sequence) position: , mismatch: 5, identity: 0.8

gttgttccccacagcgccgagccgc	CRISPR spacer
accgttccccaccgcgccgagccgt	Protospacer
...********* ***********.

6. spacer 1.2|806422|25|NZ_CP016190|CRISPRCasFinder matches to CP030167 (Xanthomonas citri pv. punicae strain LMG7504 plasmid unnamed1, complete sequence) position: , mismatch: 5, identity: 0.8

gttgttccccacagcgccgagccgc	CRISPR spacer
accgttccccaccgcgccgagccgt	Protospacer
...********* ***********.

7. spacer 1.2|806422|25|NZ_CP016190|CRISPRCasFinder matches to CP030170 (Xanthomonas citri pv. punicae strain BD0025 plasmid unnamed, complete sequence) position: , mismatch: 5, identity: 0.8

gttgttccccacagcgccgagccgc	CRISPR spacer
accgttccccaccgcgccgagccgt	Protospacer
...********* ***********.

8. spacer 1.2|806422|25|NZ_CP016190|CRISPRCasFinder matches to CP030162 (Xanthomonas citri pv. punicae strain BD0023 plasmid unnamed, complete sequence) position: , mismatch: 5, identity: 0.8

gttgttccccacagcgccgagccgc	CRISPR spacer
accgttccccaccgcgccgagccgt	Protospacer
...********* ***********.

9. spacer 1.2|806422|25|NZ_CP016190|CRISPRCasFinder matches to NZ_CP030165 (Xanthomonas citri pv. punicae strain LMG7439 plasmid unnamed, complete sequence) position: , mismatch: 5, identity: 0.8

gttgttccccacagcgccgagccgc	CRISPR spacer
accgttccccaccgcgccgagccgt	Protospacer
...********* ***********.

10. spacer 1.1|806368|28|NZ_CP016190|CRISPRCasFinder matches to JQ809663 (Stenotrophomonas phage Smp131, complete genome) position: , mismatch: 6, identity: 0.786

ccagcagcgcctcgcaccgcagaagcct	CRISPR spacer
acagcagcgcatcgcaacgcagaagaac	Protospacer
 ********* ***** ********  .

11. spacer 1.1|806368|28|NZ_CP016190|CRISPRCasFinder matches to NZ_CP021083 (Deinococcus ficus strain CC-FR2-10 plasmid pDFI2, complete sequence) position: , mismatch: 6, identity: 0.786

ccagcagcgcctcgcaccgcagaagcct	CRISPR spacer
ccagcagcgcctcgcagcgcagcttctc	Protospacer
**************** *****   *..

12. spacer 2.2|819745|36|NZ_CP016190|CRISPRCasFinder,CRT matches to NZ_AP022593 (Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence) position: , mismatch: 7, identity: 0.806

accgcatctcggtgatctgcaccgtcgacgccgtga	CRISPR spacer
gctgcatctcggtgatctgcatggtcgacgccggcg	Protospacer
.*.******************. **********  .

13. spacer 2.7|820054|34|NZ_CP016190|CRT matches to NZ_CP051182 (Thalassobius gelatinovorus strain NEB572 plasmid pAge77, complete sequence) position: , mismatch: 8, identity: 0.765

ccccggccgctggctccggcacccgg---aagccgag	CRISPR spacer
tcctggccggtggctccggcacccggctttatcc---	Protospacer
.**.***** ****************    * **   

14. spacer 2.7|820054|34|NZ_CP016190|CRT matches to NZ_CP044550 (Hydrogenophaga sp. BPS33 plasmid pBPS33-1, complete sequence) position: , mismatch: 9, identity: 0.735

ccccggccgctggctccggcacccggaagccgag	CRISPR spacer
cgcccgccgctggctccagcacccggccaccctc	Protospacer
* ** ************.********  .**   

15. spacer 2.7|820054|34|NZ_CP016190|CRT matches to NZ_CP014942 (Rhodococcus sp. BH4 plasmid, complete sequence) position: , mismatch: 10, identity: 0.706

ccccggccgctggctccggcacccggaagccgag	CRISPR spacer
tcagcgccgccggcaccggcacccggaaggagcc	Protospacer
.*   *****.*** **************  *  

16. spacer 2.7|820054|34|NZ_CP016190|CRT matches to NZ_CP021767 (Ralstonia solanacearum strain RS 489 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.706

ccccggccgctggctccggcacccggaagccgag	CRISPR spacer
tcacggccgatggctccggcacctggacctacac	Protospacer
.* ****** *************.***  .  * 

17. spacer 2.7|820054|34|NZ_CP016190|CRT matches to NZ_CP042916 (Rhodococcus qingshengii strain RL1 plasmid unnamed1, complete sequence) position: , mismatch: 11, identity: 0.676

ccccggccgctggctccggcacccggaagccgag	CRISPR spacer
tcagcgccgccggcaccggcacccggaaggaacc	Protospacer
.*   *****.*** **************  .  

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 2930234 : 2938793 7 Streptococcus_phage(16.67%) NA NA
DBSCAN-SWA_2 3528922 : 3546427 19 Mycobacterium_phage(81.25%) NA NA
DBSCAN-SWA_3 3550996 : 3564114 20 Mycobacterium_phage(45.45%) NA NA
DBSCAN-SWA_4 3931109 : 3942300 19 Mycobacterium_phage(64.29%) NA NA
DBSCAN-SWA_5 3948375 : 3975775 31 Mycobacterium_phage(92.0%) terminase NA
DBSCAN-SWA_6 4287677 : 4297169 8 Burkholderia_phage(25.0%) NA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage