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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP012498 Escherichia coli strain 06-00048 isolate CFSAN004178 plasmid pCFSAN004178P_02, complete sequence 0 crisprs RT 0 0 3 0
NZ_CP015229 Escherichia coli strain 06-00048 chromosome, complete genome 5 crisprs DinG,cas3,DEDDh,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,c2c9_V-U4 0 13 14 0

Results visualization

1. NZ_CP012498
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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 22352 : 75556 39 Bacillus_phage(55.56%) transposase NA
DBSCAN-SWA_2 128416 : 189199 42 Escherichia_phage(30.0%) plate,integrase,transposase,tRNA attL 141269:141290|attR 187826:187847
DBSCAN-SWA_3 203827 : 212095 8 Stx2-converting_phage(42.86%) transposase NA

Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
2. NZ_CP015229
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP015229_1 427532-427627 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP015229_2 2160480-2160610 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP015229_3 2723902-2724035 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP015229_4 3512817-3513516 TypeI-E I-E
11 spacers
cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP015229_5 3538965-3539786 Unclear I-E
13 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP015229_2 2.1|2160521|49|NZ_CP015229|CRISPRCasFinder 2160521-2160569 49 KJ603229 Shigella phage POCJ13, complete genome 10125-10173 0 1.0
NZ_CP015229_2 2.1|2160521|49|NZ_CP015229|CRISPRCasFinder 2160521-2160569 49 NC_029120 Shigella phage 75/02 Stx, complete genome 10125-10173 0 1.0
NZ_CP015229_5 5.3|3539116|32|NZ_CP015229|CRISPRCasFinder,CRT,PILER-CR 3539116-3539147 32 KP869108 Escherichia coli O157 typing phage 10, complete genome 36800-36831 1 0.969
NZ_CP015229_5 5.3|3539116|32|NZ_CP015229|CRISPRCasFinder,CRT,PILER-CR 3539116-3539147 32 KP869107 Escherichia coli O157 typing phage 9, partial genome 36924-36955 1 0.969
NZ_CP015229_5 5.3|3539116|32|NZ_CP015229|CRISPRCasFinder,CRT,PILER-CR 3539116-3539147 32 NC_019711 Enterobacteria phage HK629, complete genome 30191-30222 1 0.969
NZ_CP015229_5 5.3|3539116|32|NZ_CP015229|CRISPRCasFinder,CRT,PILER-CR 3539116-3539147 32 NC_007804 Escherichia phage phiV10, complete genome 36126-36157 1 0.969
NZ_CP015229_5 5.3|3539116|32|NZ_CP015229|CRISPRCasFinder,CRT,PILER-CR 3539116-3539147 32 DQ126339 Enterobacteria phage phiV10, complete genome 36126-36157 1 0.969
NZ_CP015229_5 5.3|3539116|32|NZ_CP015229|CRISPRCasFinder,CRT,PILER-CR 3539116-3539147 32 MT225100 Escherichia phage Lys8385Vzw, complete genome 29685-29716 1 0.969
NZ_CP015229_4 4.1|3512846|32|NZ_CP015229|CRT 3512846-3512877 32 LC542972 Escherichia coli IOMTU792 plasmid pIOMTU792 DNA, complete sequence 246937-246968 2 0.938
NZ_CP015229_5 5.7|3539360|32|NZ_CP015229|CRISPRCasFinder,CRT,PILER-CR 3539360-3539391 32 NC_011802 Salmonella enterica bacteriophage SE1, complete genome 6610-6641 2 0.938
NZ_CP015229_5 5.7|3539360|32|NZ_CP015229|CRISPRCasFinder,CRT,PILER-CR 3539360-3539391 32 CP051272 Salmonella phage SW-70, complete genome 1755-1786 2 0.938
NZ_CP015229_5 5.7|3539360|32|NZ_CP015229|CRISPRCasFinder,CRT,PILER-CR 3539360-3539391 32 CP051278 Salmonella phage ST-87, complete genome 17533-17564 2 0.938
NZ_CP015229_5 5.7|3539360|32|NZ_CP015229|CRISPRCasFinder,CRT,PILER-CR 3539360-3539391 32 CP051288 Salmonella phage ST-29, complete genome 30329-30360 2 0.938
NZ_CP015229_5 5.7|3539360|32|NZ_CP015229|CRISPRCasFinder,CRT,PILER-CR 3539360-3539391 32 CP051285 Salmonella phage ST-32, complete genome 23470-23501 2 0.938
NZ_CP015229_5 5.7|3539360|32|NZ_CP015229|CRISPRCasFinder,CRT,PILER-CR 3539360-3539391 32 NC_014900 Salmonella phage ST160, complete genome 6628-6659 2 0.938
NZ_CP015229_3 3.1|2723940|58|NZ_CP015229|CRISPRCasFinder 2723940-2723997 58 MT230312 Escherichia coli strain DH5alpha plasmid pESBL31, complete sequence 104-161 5 0.914
NZ_CP015229_5 5.6|3539299|32|NZ_CP015229|CRISPRCasFinder,CRT,PILER-CR 3539299-3539330 32 MF417881 Uncultured Caudovirales phage clone 7AX_3, partial genome 32692-32723 6 0.812
NZ_CP015229_5 5.6|3539299|32|NZ_CP015229|CRISPRCasFinder,CRT,PILER-CR 3539299-3539330 32 MF417842 Uncultured Caudovirales phage clone 8AX_3, partial genome 2655-2686 6 0.812
NZ_CP015229_5 5.6|3539299|32|NZ_CP015229|CRISPRCasFinder,CRT,PILER-CR 3539299-3539330 32 MF417862 Uncultured Caudovirales phage clone 7F_9, partial genome 5953-5984 6 0.812
NZ_CP015229_5 5.10|3539543|32|NZ_CP015229|CRISPRCasFinder,CRT,PILER-CR 3539543-3539574 32 NZ_CP029830 Azospirillum ramasamyi strain M2T2B2 plasmid unnamed1, complete sequence 461854-461885 6 0.812
NZ_CP015229_4 4.1|3512846|32|NZ_CP015229|CRT 3512846-3512877 32 NZ_CP015038 Burkholderia cenocepacia strain 895 plasmid pBcp895-1, complete sequence 112768-112799 7 0.781
NZ_CP015229_4 4.2|3512907|32|NZ_CP015229|CRT,PILER-CR,CRISPRCasFinder 3512907-3512938 32 CP021891 Bacillus velezensis strain SRCM101413 plasmid pBV1413 sequence 3349-3380 7 0.781
NZ_CP015229_4 4.7|3513212|32|NZ_CP015229|CRT,PILER-CR,CRISPRCasFinder 3513212-3513243 32 MK448873 Streptococcus phage Javan202, complete genome 40690-40721 7 0.781
NZ_CP015229_4 4.1|3512846|32|NZ_CP015229|CRT 3512846-3512877 32 NZ_CP017563 Paraburkholderia sprentiae WSM5005 plasmid pl1WSM5005, complete sequence 141278-141309 8 0.75
NZ_CP015229_4 4.1|3512846|32|NZ_CP015229|CRT 3512846-3512877 32 NZ_AP014705 Methylobacterium aquaticum strain MA-22A plasmid pMaq22A_1p, complete sequence 1428097-1428128 8 0.75
NZ_CP015229_4 4.2|3512907|32|NZ_CP015229|CRT,PILER-CR,CRISPRCasFinder 3512907-3512938 32 NC_016585 Azospirillum lipoferum 4B plasmid AZO_p1, complete sequence 616554-616585 8 0.75
NZ_CP015229_4 4.10|3513395|32|NZ_CP015229|CRT,PILER-CR,CRISPRCasFinder 3513395-3513426 32 NC_016138 Pseudomonas aeruginosa plasmid pUM505, complete sequence 27574-27605 8 0.75
NZ_CP015229_4 4.10|3513395|32|NZ_CP015229|CRT,PILER-CR,CRISPRCasFinder 3513395-3513426 32 NZ_CP030914 Pseudomonas aeruginosa strain Y89 plasmid pY89, complete sequence 79692-79723 8 0.75
NZ_CP015229_4 4.10|3513395|32|NZ_CP015229|CRT,PILER-CR,CRISPRCasFinder 3513395-3513426 32 NC_019202 Pseudomonas aeruginosa plasmid pKLC102, complete sequence 72157-72188 8 0.75
NZ_CP015229_4 4.2|3512907|32|NZ_CP015229|CRT,PILER-CR,CRISPRCasFinder 3512907-3512938 32 MT657335 Gordonia phage Mariokart, complete genome 43305-43336 9 0.719
NZ_CP015229_5 5.7|3539360|32|NZ_CP015229|CRISPRCasFinder,CRT,PILER-CR 3539360-3539391 32 MN694480 Marine virus AFVG_250M133, complete genome 34926-34957 9 0.719
NZ_CP015229_5 5.7|3539360|32|NZ_CP015229|CRISPRCasFinder,CRT,PILER-CR 3539360-3539391 32 MN693836 Marine virus AFVG_250M487, complete genome 27368-27399 9 0.719
NZ_CP015229_5 5.7|3539360|32|NZ_CP015229|CRISPRCasFinder,CRT,PILER-CR 3539360-3539391 32 MN693891 Marine virus AFVG_250M480, complete genome 224-255 9 0.719
NZ_CP015229_5 5.7|3539360|32|NZ_CP015229|CRISPRCasFinder,CRT,PILER-CR 3539360-3539391 32 MN693891 Marine virus AFVG_250M480, complete genome 38333-38364 9 0.719
NZ_CP015229_5 5.7|3539360|32|NZ_CP015229|CRISPRCasFinder,CRT,PILER-CR 3539360-3539391 32 MN694671 Marine virus AFVG_250M145, complete genome 7063-7094 9 0.719
NZ_CP015229_5 5.7|3539360|32|NZ_CP015229|CRISPRCasFinder,CRT,PILER-CR 3539360-3539391 32 MN694753 Marine virus AFVG_250M144, complete genome 9364-9395 9 0.719
NZ_CP015229_5 5.7|3539360|32|NZ_CP015229|CRISPRCasFinder,CRT,PILER-CR 3539360-3539391 32 MN694231 Marine virus AFVG_250M143, complete genome 244-275 9 0.719
NZ_CP015229_5 5.7|3539360|32|NZ_CP015229|CRISPRCasFinder,CRT,PILER-CR 3539360-3539391 32 MN694231 Marine virus AFVG_250M143, complete genome 37260-37291 9 0.719
NZ_CP015229_5 5.7|3539360|32|NZ_CP015229|CRISPRCasFinder,CRT,PILER-CR 3539360-3539391 32 MN694071 Marine virus AFVG_250M483, complete genome 33464-33495 9 0.719
NZ_CP015229_5 5.7|3539360|32|NZ_CP015229|CRISPRCasFinder,CRT,PILER-CR 3539360-3539391 32 MN694294 Marine virus AFVG_250M486, complete genome 24950-24981 9 0.719
NZ_CP015229_5 5.7|3539360|32|NZ_CP015229|CRISPRCasFinder,CRT,PILER-CR 3539360-3539391 32 MN693751 Marine virus AFVG_250M485, complete genome 29585-29616 9 0.719
NZ_CP015229_5 5.7|3539360|32|NZ_CP015229|CRISPRCasFinder,CRT,PILER-CR 3539360-3539391 32 MN694002 Marine virus AFVG_250M481, complete genome 35273-35304 9 0.719
NZ_CP015229_5 5.7|3539360|32|NZ_CP015229|CRISPRCasFinder,CRT,PILER-CR 3539360-3539391 32 MN693981 Marine virus AFVG_250M146, complete genome 34873-34904 9 0.719
NZ_CP015229_5 5.7|3539360|32|NZ_CP015229|CRISPRCasFinder,CRT,PILER-CR 3539360-3539391 32 MN694650 Marine virus AFVG_250M482, complete genome 36689-36720 9 0.719
NZ_CP015229_5 5.7|3539360|32|NZ_CP015229|CRISPRCasFinder,CRT,PILER-CR 3539360-3539391 32 MN694711 Marine virus AFVG_250M484, complete genome 8488-8519 9 0.719
NZ_CP015229_5 5.11|3539604|32|NZ_CP015229|CRISPRCasFinder,CRT,PILER-CR 3539604-3539635 32 NZ_CP033579 Vibrio mediterranei strain 117-T6 plasmid unnamed, complete sequence 62508-62539 9 0.719
NZ_CP015229_4 4.2|3512907|32|NZ_CP015229|CRT,PILER-CR,CRISPRCasFinder 3512907-3512938 32 NZ_CP049359 Deinococcus wulumuqiensis R12 plasmid unnamed2, complete sequence 7267-7298 10 0.688
NZ_CP015229_4 4.2|3512907|32|NZ_CP015229|CRT,PILER-CR,CRISPRCasFinder 3512907-3512938 32 NZ_CP031163 Deinococcus wulumuqiensis strain NEB 479 plasmid pDrdI, complete sequence 567209-567240 10 0.688
NZ_CP015229_4 4.8|3513273|32|NZ_CP015229|CRT,PILER-CR,CRISPRCasFinder 3513273-3513304 32 NC_009444 Pseudomonas fluorescens SBW25 plasmid pQBR103, complete sequence 77345-77376 10 0.688
NZ_CP015229_4 4.8|3513273|32|NZ_CP015229|CRT,PILER-CR,CRISPRCasFinder 3513273-3513304 32 NC_022739 Pseudomonas sp. VLB120 plasmid pSTY, complete sequence 190498-190529 10 0.688
NZ_CP015229_4 4.10|3513395|32|NZ_CP015229|CRT,PILER-CR,CRISPRCasFinder 3513395-3513426 32 NZ_CP032346 Azospirillum brasilense strain MTCC4039 plasmid p1, complete sequence 201120-201151 10 0.688
NZ_CP015229_5 5.7|3539360|32|NZ_CP015229|CRISPRCasFinder,CRT,PILER-CR 3539360-3539391 32 NC_007766 Rhizobium etli CFN 42 plasmid p42f, complete sequence 614043-614074 10 0.688
NZ_CP015229_5 5.8|3539421|32|NZ_CP015229|CRISPRCasFinder,CRT,PILER-CR 3539421-3539452 32 NZ_CP020945 Pantoea ananatis strain PNA 97-1R plasmid unamed2, complete sequence 5872-5903 10 0.688
NZ_CP015229_3 3.1|2723940|58|NZ_CP015229|CRISPRCasFinder 2723940-2723997 58 NZ_CP044147 Escherichia coli O157 strain AR-0428 plasmid pAR-0428-2 7432-7489 11 0.81
NZ_CP015229_3 3.1|2723940|58|NZ_CP015229|CRISPRCasFinder 2723940-2723997 58 CP044351 Escherichia coli strain 194195 plasmid p194195_1, complete sequence 84256-84313 11 0.81

1. spacer 2.1|2160521|49|NZ_CP015229|CRISPRCasFinder matches to KJ603229 (Shigella phage POCJ13, complete genome) position: , mismatch: 0, identity: 1.0 

gactgcacattggtgtgactgcacatcttcacagacggtcccggtatct	CRISPR spacer
gactgcacattggtgtgactgcacatcttcacagacggtcccggtatct	Protospacer
*************************************************

2. spacer 2.1|2160521|49|NZ_CP015229|CRISPRCasFinder matches to NC_029120 (Shigella phage 75/02 Stx, complete genome) position: , mismatch: 0, identity: 1.0 

gactgcacattggtgtgactgcacatcttcacagacggtcccggtatct	CRISPR spacer
gactgcacattggtgtgactgcacatcttcacagacggtcccggtatct	Protospacer
*************************************************

3. spacer 5.3|3539116|32|NZ_CP015229|CRISPRCasFinder,CRT,PILER-CR matches to KP869108 (Escherichia coli O157 typing phage 10, complete genome) position: , mismatch: 1, identity: 0.969 

cagtgagcggaagaagaatgactaacagagag	CRISPR spacer
cagtgagcggaaaaagaatgactaacagagag	Protospacer
************.*******************

4. spacer 5.3|3539116|32|NZ_CP015229|CRISPRCasFinder,CRT,PILER-CR matches to KP869107 (Escherichia coli O157 typing phage 9, partial genome) position: , mismatch: 1, identity: 0.969 

cagtgagcggaagaagaatgactaacagagag	CRISPR spacer
cagtgagcggaaaaagaatgactaacagagag	Protospacer
************.*******************

5. spacer 5.3|3539116|32|NZ_CP015229|CRISPRCasFinder,CRT,PILER-CR matches to NC_019711 (Enterobacteria phage HK629, complete genome) position: , mismatch: 1, identity: 0.969 

cagtgagcggaagaagaatgactaacagagag	CRISPR spacer
cagtgagcggaaaaagaatgactaacagagag	Protospacer
************.*******************

6. spacer 5.3|3539116|32|NZ_CP015229|CRISPRCasFinder,CRT,PILER-CR matches to NC_007804 (Escherichia phage phiV10, complete genome) position: , mismatch: 1, identity: 0.969 

cagtgagcggaagaagaatgactaacagagag	CRISPR spacer
cagtgagcggaaaaagaatgactaacagagag	Protospacer
************.*******************

7. spacer 5.3|3539116|32|NZ_CP015229|CRISPRCasFinder,CRT,PILER-CR matches to DQ126339 (Enterobacteria phage phiV10, complete genome) position: , mismatch: 1, identity: 0.969 

cagtgagcggaagaagaatgactaacagagag	CRISPR spacer
cagtgagcggaaaaagaatgactaacagagag	Protospacer
************.*******************

8. spacer 5.3|3539116|32|NZ_CP015229|CRISPRCasFinder,CRT,PILER-CR matches to MT225100 (Escherichia phage Lys8385Vzw, complete genome) position: , mismatch: 1, identity: 0.969 

cagtgagcggaagaagaatgactaacagagag	CRISPR spacer
cagtgagcggaaaaagaatgactaacagagag	Protospacer
************.*******************

9. spacer 4.1|3512846|32|NZ_CP015229|CRT matches to LC542972 (Escherichia coli IOMTU792 plasmid pIOMTU792 DNA, complete sequence) position: , mismatch: 2, identity: 0.938 

caagtgatatccatcatcgcatccagtgcgcc	CRISPR spacer
caagtgatgtccatcatcgcatccagtgcgtc	Protospacer
********.*********************.*

10. spacer 5.7|3539360|32|NZ_CP015229|CRISPRCasFinder,CRT,PILER-CR matches to NC_011802 (Salmonella enterica bacteriophage SE1, complete genome) position: , mismatch: 2, identity: 0.938 

ttatgcatctcatcaagcttgtcgccaaacga	CRISPR spacer
ttatgcatctcattaagcttgtcgccaaatga	Protospacer
*************.***************.**

11. spacer 5.7|3539360|32|NZ_CP015229|CRISPRCasFinder,CRT,PILER-CR matches to CP051272 (Salmonella phage SW-70, complete genome) position: , mismatch: 2, identity: 0.938 

ttatgcatctcatcaagcttgtcgccaaacga	CRISPR spacer
ttatgcatctcattaagcttgtcgccaaatga	Protospacer
*************.***************.**

12. spacer 5.7|3539360|32|NZ_CP015229|CRISPRCasFinder,CRT,PILER-CR matches to CP051278 (Salmonella phage ST-87, complete genome) position: , mismatch: 2, identity: 0.938 

ttatgcatctcatcaagcttgtcgccaaacga	CRISPR spacer
ttatgcatctcattaagcttgtcgccaaatga	Protospacer
*************.***************.**

13. spacer 5.7|3539360|32|NZ_CP015229|CRISPRCasFinder,CRT,PILER-CR matches to CP051288 (Salmonella phage ST-29, complete genome) position: , mismatch: 2, identity: 0.938 

ttatgcatctcatcaagcttgtcgccaaacga	CRISPR spacer
ttatgcatctcattaagcttgtcgccaaatga	Protospacer
*************.***************.**

14. spacer 5.7|3539360|32|NZ_CP015229|CRISPRCasFinder,CRT,PILER-CR matches to CP051285 (Salmonella phage ST-32, complete genome) position: , mismatch: 2, identity: 0.938 

ttatgcatctcatcaagcttgtcgccaaacga	CRISPR spacer
ttatgcatctcattaagcttgtcgccaaatga	Protospacer
*************.***************.**

15. spacer 5.7|3539360|32|NZ_CP015229|CRISPRCasFinder,CRT,PILER-CR matches to NC_014900 (Salmonella phage ST160, complete genome) position: , mismatch: 2, identity: 0.938 

ttatgcatctcatcaagcttgtcgccaaacga	CRISPR spacer
ttatgcatctcattaagcttgtcgccaaatga	Protospacer
*************.***************.**

16. spacer 3.1|2723940|58|NZ_CP015229|CRISPRCasFinder matches to MT230312 (Escherichia coli strain DH5alpha plasmid pESBL31, complete sequence) position: , mismatch: 5, identity: 0.914 

agacccgagcacagaaccgtaggccggataaggcgttcacgccgcatccggcattcag	CRISPR spacer
agacccgagcacagaaccgtaggacggataaggcgttcacgccgcatccggcgatcgt	Protospacer
*********************** ****************************. **.

17. spacer 5.6|3539299|32|NZ_CP015229|CRISPRCasFinder,CRT,PILER-CR matches to MF417881 (Uncultured Caudovirales phage clone 7AX_3, partial genome) position: , mismatch: 6, identity: 0.812 

tttgcgccggaaataggaatcgtattcggtct	CRISPR spacer
tatgtatcgcaaacaggaatcgtattcggtct	Protospacer
* **...** ***.******************

18. spacer 5.6|3539299|32|NZ_CP015229|CRISPRCasFinder,CRT,PILER-CR matches to MF417842 (Uncultured Caudovirales phage clone 8AX_3, partial genome) position: , mismatch: 6, identity: 0.812 

tttgcgccggaaataggaatcgtattcggtct	CRISPR spacer
tatgtatcgcaaacaggaatcgtattcggtct	Protospacer
* **...** ***.******************

19. spacer 5.6|3539299|32|NZ_CP015229|CRISPRCasFinder,CRT,PILER-CR matches to MF417862 (Uncultured Caudovirales phage clone 7F_9, partial genome) position: , mismatch: 6, identity: 0.812 

tttgcgccggaaataggaatcgtattcggtct	CRISPR spacer
tatgtatcgcaaacaggaatcgtattcggtct	Protospacer
* **...** ***.******************

20. spacer 5.10|3539543|32|NZ_CP015229|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP029830 (Azospirillum ramasamyi strain M2T2B2 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.812 

caaacgcttcttcgtaggcagcactgtaggcc-	CRISPR spacer
caaacgcatcttcgtcggcagca-tgcgagcct	Protospacer
******* ******* ******* **...***

21. spacer 4.1|3512846|32|NZ_CP015229|CRT matches to NZ_CP015038 (Burkholderia cenocepacia strain 895 plasmid pBcp895-1, complete sequence) position: , mismatch: 7, identity: 0.781 

caagtgat-atccatcatcgcatccagtgcgcc	CRISPR spacer
-ggttgatcgtccttcatcgcagccagtgcgcc	Protospacer
 .. **** .*** ******** **********

22. spacer 4.2|3512907|32|NZ_CP015229|CRT,PILER-CR,CRISPRCasFinder matches to CP021891 (Bacillus velezensis strain SRCM101413 plasmid pBV1413 sequence) position: , mismatch: 7, identity: 0.781 

caaatccagccagccgccgacggtaatcaccc	CRISPR spacer
catgcacagcccgccgccgacggtaatcagca	Protospacer
** .. ***** ***************** *

23. spacer 4.7|3513212|32|NZ_CP015229|CRT,PILER-CR,CRISPRCasFinder matches to MK448873 (Streptococcus phage Javan202, complete genome) position: , mismatch: 7, identity: 0.781 

acttacaaccacaataataaaaaaagcctcgt	CRISPR spacer
cgttataaccacaataataaaaaaagtccgtt	Protospacer
  ***.********************.*.  *

24. spacer 4.1|3512846|32|NZ_CP015229|CRT matches to NZ_CP017563 (Paraburkholderia sprentiae WSM5005 plasmid pl1WSM5005, complete sequence) position: , mismatch: 8, identity: 0.75 

caagtgatatccatcatcgcatccagtgcgcc	CRISPR spacer
ctcatcgcatccatcatcggttccagtgcgcc	Protospacer
*  .* ..***********  ***********

25. spacer 4.1|3512846|32|NZ_CP015229|CRT matches to NZ_AP014705 (Methylobacterium aquaticum strain MA-22A plasmid pMaq22A_1p, complete sequence) position: , mismatch: 8, identity: 0.75 

caagtg---atatccatcatcgcatccagtgcgcc	CRISPR spacer
---gtgcgcccctccatcaccgcttccagtgcgcc	Protospacer
   ***    . *******.*** ***********

26. spacer 4.2|3512907|32|NZ_CP015229|CRT,PILER-CR,CRISPRCasFinder matches to NC_016585 (Azospirillum lipoferum 4B plasmid AZO_p1, complete sequence) position: , mismatch: 8, identity: 0.75 

caaatccagccagccgccgacggtaatcaccc	CRISPR spacer
ggtcttcagccagccgtcgtcggtaatcacct	Protospacer
 .  *.**********.** ***********.

27. spacer 4.10|3513395|32|NZ_CP015229|CRT,PILER-CR,CRISPRCasFinder matches to NC_016138 (Pseudomonas aeruginosa plasmid pUM505, complete sequence) position: , mismatch: 8, identity: 0.75 

---tttaaatactgccgttccagcttgttgatcgc	CRISPR spacer
gcattca---tctgccggtccagcttgttgaacgg	Protospacer
   **.*    ****** ************* **

28. spacer 4.10|3513395|32|NZ_CP015229|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP030914 (Pseudomonas aeruginosa strain Y89 plasmid pY89, complete sequence) position: , mismatch: 8, identity: 0.75 

---tttaaatactgccgttccagcttgttgatcgc	CRISPR spacer
gcattca---tctgccggtccagcttgttgaacgg	Protospacer
   **.*    ****** ************* **

29. spacer 4.10|3513395|32|NZ_CP015229|CRT,PILER-CR,CRISPRCasFinder matches to NC_019202 (Pseudomonas aeruginosa plasmid pKLC102, complete sequence) position: , mismatch: 8, identity: 0.75 

---tttaaatactgccgttccagcttgttgatcgc	CRISPR spacer
gcattca---tctgccggtccagcttgttgaacgg	Protospacer
   **.*    ****** ************* **

30. spacer 4.2|3512907|32|NZ_CP015229|CRT,PILER-CR,CRISPRCasFinder matches to MT657335 (Gordonia phage Mariokart, complete genome) position: , mismatch: 9, identity: 0.719 

caaatccagccagccgccgacggtaatcaccc	CRISPR spacer
gcccgccgacctgccgccgacggtcatcaccc	Protospacer
     **..** ************ *******

31. spacer 5.7|3539360|32|NZ_CP015229|CRISPRCasFinder,CRT,PILER-CR matches to MN694480 (Marine virus AFVG_250M133, complete genome) position: , mismatch: 9, identity: 0.719 

ttatgcatctcatcaagcttgtcgccaaacga	CRISPR spacer
ttatacatctcctcaagcttgtctggagaaag	Protospacer
****.****** ***********   *.* ..

32. spacer 5.7|3539360|32|NZ_CP015229|CRISPRCasFinder,CRT,PILER-CR matches to MN693836 (Marine virus AFVG_250M487, complete genome) position: , mismatch: 9, identity: 0.719 

ttatgcatctcatcaagcttgtcgccaaacga	CRISPR spacer
ttatacatctcctcaagcttgtctggagaaag	Protospacer
****.****** ***********   *.* ..

33. spacer 5.7|3539360|32|NZ_CP015229|CRISPRCasFinder,CRT,PILER-CR matches to MN693891 (Marine virus AFVG_250M480, complete genome) position: , mismatch: 9, identity: 0.719 

ttatgcatctcatcaagcttgtcgccaaacga	CRISPR spacer
ttatacatctcctcaagcttgtctggagaaag	Protospacer
****.****** ***********   *.* ..

34. spacer 5.7|3539360|32|NZ_CP015229|CRISPRCasFinder,CRT,PILER-CR matches to MN693891 (Marine virus AFVG_250M480, complete genome) position: , mismatch: 9, identity: 0.719 

ttatgcatctcatcaagcttgtcgccaaacga	CRISPR spacer
ttatacatctcctcaagcttgtctggagaaag	Protospacer
****.****** ***********   *.* ..

35. spacer 5.7|3539360|32|NZ_CP015229|CRISPRCasFinder,CRT,PILER-CR matches to MN694671 (Marine virus AFVG_250M145, complete genome) position: , mismatch: 9, identity: 0.719 

ttatgcatctcatcaagcttgtcgccaaacga	CRISPR spacer
ttatacatctcctcaagcttgtctggagaaag	Protospacer
****.****** ***********   *.* ..

36. spacer 5.7|3539360|32|NZ_CP015229|CRISPRCasFinder,CRT,PILER-CR matches to MN694753 (Marine virus AFVG_250M144, complete genome) position: , mismatch: 9, identity: 0.719 

ttatgcatctcatcaagcttgtcgccaaacga	CRISPR spacer
ttatacatctcctcaagcttgtctggagaaag	Protospacer
****.****** ***********   *.* ..

37. spacer 5.7|3539360|32|NZ_CP015229|CRISPRCasFinder,CRT,PILER-CR matches to MN694231 (Marine virus AFVG_250M143, complete genome) position: , mismatch: 9, identity: 0.719 

ttatgcatctcatcaagcttgtcgccaaacga	CRISPR spacer
ttatacatctcctcaagcttgtctggagaaag	Protospacer
****.****** ***********   *.* ..

38. spacer 5.7|3539360|32|NZ_CP015229|CRISPRCasFinder,CRT,PILER-CR matches to MN694231 (Marine virus AFVG_250M143, complete genome) position: , mismatch: 9, identity: 0.719 

ttatgcatctcatcaagcttgtcgccaaacga	CRISPR spacer
ttatacatctcctcaagcttgtctggagaaag	Protospacer
****.****** ***********   *.* ..

39. spacer 5.7|3539360|32|NZ_CP015229|CRISPRCasFinder,CRT,PILER-CR matches to MN694071 (Marine virus AFVG_250M483, complete genome) position: , mismatch: 9, identity: 0.719 

ttatgcatctcatcaagcttgtcgccaaacga	CRISPR spacer
ttatacatctcctcaagcttgtctggagaaag	Protospacer
****.****** ***********   *.* ..

40. spacer 5.7|3539360|32|NZ_CP015229|CRISPRCasFinder,CRT,PILER-CR matches to MN694294 (Marine virus AFVG_250M486, complete genome) position: , mismatch: 9, identity: 0.719 

ttatgcatctcatcaagcttgtcgccaaacga	CRISPR spacer
ttatacatctcctcaagcttgtctggagaaag	Protospacer
****.****** ***********   *.* ..

41. spacer 5.7|3539360|32|NZ_CP015229|CRISPRCasFinder,CRT,PILER-CR matches to MN693751 (Marine virus AFVG_250M485, complete genome) position: , mismatch: 9, identity: 0.719 

ttatgcatctcatcaagcttgtcgccaaacga	CRISPR spacer
ttatacatctcctcaagcttgtctggagaaag	Protospacer
****.****** ***********   *.* ..

42. spacer 5.7|3539360|32|NZ_CP015229|CRISPRCasFinder,CRT,PILER-CR matches to MN694002 (Marine virus AFVG_250M481, complete genome) position: , mismatch: 9, identity: 0.719 

ttatgcatctcatcaagcttgtcgccaaacga	CRISPR spacer
ttatacatctcctcaagcttgtctggagaaag	Protospacer
****.****** ***********   *.* ..

43. spacer 5.7|3539360|32|NZ_CP015229|CRISPRCasFinder,CRT,PILER-CR matches to MN693981 (Marine virus AFVG_250M146, complete genome) position: , mismatch: 9, identity: 0.719 

ttatgcatctcatcaagcttgtcgccaaacga	CRISPR spacer
ttatacatctcctcaagcttgtctggagaaag	Protospacer
****.****** ***********   *.* ..

44. spacer 5.7|3539360|32|NZ_CP015229|CRISPRCasFinder,CRT,PILER-CR matches to MN694650 (Marine virus AFVG_250M482, complete genome) position: , mismatch: 9, identity: 0.719 

ttatgcatctcatcaagcttgtcgccaaacga	CRISPR spacer
ttatacatctcctcaagcttgtctggagaaag	Protospacer
****.****** ***********   *.* ..

45. spacer 5.7|3539360|32|NZ_CP015229|CRISPRCasFinder,CRT,PILER-CR matches to MN694711 (Marine virus AFVG_250M484, complete genome) position: , mismatch: 9, identity: 0.719 

ttatgcatctcatcaagcttgtcgccaaacga	CRISPR spacer
ttatacatctcctcaagcttgtctggagaaag	Protospacer
****.****** ***********   *.* ..

46. spacer 5.11|3539604|32|NZ_CP015229|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP033579 (Vibrio mediterranei strain 117-T6 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719 

ggtgaaaagatgagtgcatactggtttgtttt	CRISPR spacer
aaacaaaagatgagtacatacttgtttgccgt	Protospacer
..  ***********.****** *****.. *

47. spacer 4.2|3512907|32|NZ_CP015229|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP049359 (Deinococcus wulumuqiensis R12 plasmid unnamed2, complete sequence) position: , mismatch: 10, identity: 0.688 

caaatccagccagccgccgacggtaatcaccc	CRISPR spacer
ggcgaccagccagccgccgacggacatccaca	Protospacer
 . . ******************  ***  *

48. spacer 4.2|3512907|32|NZ_CP015229|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP031163 (Deinococcus wulumuqiensis strain NEB 479 plasmid pDrdI, complete sequence) position: , mismatch: 10, identity: 0.688 

caaatccagccagccgccgacggtaatcaccc	CRISPR spacer
ggcgaccagccagccgccgacggacatccaca	Protospacer
 . . ******************  ***  *

49. spacer 4.8|3513273|32|NZ_CP015229|CRT,PILER-CR,CRISPRCasFinder matches to NC_009444 (Pseudomonas fluorescens SBW25 plasmid pQBR103, complete sequence) position: , mismatch: 10, identity: 0.688 

gccgctatctcaccaccagaactgttacccgt	CRISPR spacer
cgggctatctccccaccagacctgttgcgacc	Protospacer
   ******** ******** *****.*   .

50. spacer 4.8|3513273|32|NZ_CP015229|CRT,PILER-CR,CRISPRCasFinder matches to NC_022739 (Pseudomonas sp. VLB120 plasmid pSTY, complete sequence) position: , mismatch: 10, identity: 0.688 

gccgctatctcaccaccagaactgttacccgt	CRISPR spacer
cgggctatctccccaccagacctgttgcggtc	Protospacer
   ******** ******** *****.*   .

51. spacer 4.10|3513395|32|NZ_CP015229|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP032346 (Azospirillum brasilense strain MTCC4039 plasmid p1, complete sequence) position: , mismatch: 10, identity: 0.688 

tttaaatactgccgttccagcttgttgatcgc	CRISPR spacer
gcccgaagctgccgttccagcttgttcaccga	Protospacer
 .. .* .****************** *.**

52. spacer 5.7|3539360|32|NZ_CP015229|CRISPRCasFinder,CRT,PILER-CR matches to NC_007766 (Rhizobium etli CFN 42 plasmid p42f, complete sequence) position: , mismatch: 10, identity: 0.688 

ttatgcatctcatcaagcttgtcgccaaacga	CRISPR spacer
gcatggatctcatcaaggttgtcgcctccaat	Protospacer
 .*** *********** ********    .

53. spacer 5.8|3539421|32|NZ_CP015229|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP020945 (Pantoea ananatis strain PNA 97-1R plasmid unamed2, complete sequence) position: , mismatch: 10, identity: 0.688 

ttaaatcgcgctggaaaaaaatggtttttgcg	CRISPR spacer
gagtggggggctggaaaaacatggtttctgcg	Protospacer
  . .  * ********** *******.****

54. spacer 3.1|2723940|58|NZ_CP015229|CRISPRCasFinder matches to NZ_CP044147 (Escherichia coli O157 strain AR-0428 plasmid pAR-0428-2) position: , mismatch: 11, identity: 0.81 

---agacccgagcacagaaccgtaggccggataaggcgttcacgccgcatccggcattca	CRISPR spacer
acaaaact---gcactcaaccgtaggccggataaggcgttcacgccgcatccggcaattg	Protospacer
   *.**.   ****  *************************************** *..

55. spacer 3.1|2723940|58|NZ_CP015229|CRISPRCasFinder matches to CP044351 (Escherichia coli strain 194195 plasmid p194195_1, complete sequence) position: , mismatch: 11, identity: 0.81 

---agacccgagcacagaaccgtaggccggataaggcgttcacgccgcatccggcattca	CRISPR spacer
acaaaact---gcactcaaccgtaggccggataaggcgttcacgccgcatccggcaattg	Protospacer
   *.**.   ****  *************************************** *..

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 376563 : 437539 50 Escherichia_phage(23.08%) holin,portal,transposase,terminase,capsid NA
DBSCAN-SWA_2 1129493 : 1209272 104 Escherichia_phage(44.07%) integrase,tail,holin,portal,transposase,protease,terminase,head,capsid attL 1144587:1144646|attR 1204535:1204599
DBSCAN-SWA_3 1393919 : 1451854 70 Escherichia_phage(35.19%) integrase,tail,holin,portal,transposase,protease,tRNA,terminase attL 1387712:1387726|attR 1440585:1440599
DBSCAN-SWA_4 1656288 : 1709548 65 Escherichia_phage(60.34%) integrase,tail,holin,portal,transposase,protease,tRNA attL 1646538:1646553|attR 1698419:1698434
DBSCAN-SWA_5 1789352 : 1844590 73 Escherichia_phage(31.67%) plate,transposase,head,tail NA
DBSCAN-SWA_6 1849626 : 1970712 130 Escherichia_phage(45.45%) integrase,tail,holin,transposase,plate,terminase,head attL 1859949:1860008|attR 1903355:1904134
DBSCAN-SWA_7 2106975 : 2172769 79 Shigella_phage(46.05%) integrase,portal,holin,transposase,terminase,capsid,bacteriocin attL 2146539:2146556|attR 2176309:2176326
DBSCAN-SWA_8 2304277 : 2350838 63 Enterobacteria_phage(74.0%) integrase,tail,portal,holin,tRNA,plate,terminase,head,capsid attL 2306680:2306704|attR 2343479:2343503
DBSCAN-SWA_9 2553050 : 2637212 104 Escherichia_phage(34.43%) integrase,tail,portal,holin,transposase,protease,terminase attL 2589956:2590015|attR 2655430:2657841
DBSCAN-SWA_10 2715031 : 2721333 6 Enterobacteria_phage(50.0%) NA NA
DBSCAN-SWA_11 2815997 : 2825439 10 Enterobacteria_phage(85.71%) NA NA
DBSCAN-SWA_12 3313680 : 3407044 103 Enterobacteria_phage(51.67%) integrase,tail,portal,holin,transposase,protease,tRNA,terminase,head,capsid attL 3358200:3358219|attR 3407177:3407196
DBSCAN-SWA_13 3489382 : 3496522 6 Escherichia_phage(83.33%) NA NA
DBSCAN-SWA_14 5411427 : 5465179 65 Enterobacteria_phage(49.06%) integrase,tail,holin,portal,transposase,terminase,head,capsid attL 5404018:5404033|attR 5472089:5472104

Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage