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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP012501 Escherichia coli strain 08-00022 plasmid pCFSAN004179G, complete sequence 0 crisprs NA 0 0 1 0
NZ_CP013662 Escherichia coli strain 08-00022 chromosome, complete genome 8 crisprs DinG,PrimPol,cas3,c2c9_V-U4,DEDDh,WYL,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e 1 7 14 0

Results visualization

1. NZ_CP012501
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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 7543 : 128525 91 Escherichia_phage(23.81%) plate,transposase,integrase attL 31216:31247|attR 137983:138014

Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
2. NZ_CP013662
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP013662_1 65217-65340 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP013662_2 248679-248820 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP013662_3 574956-575052 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP013662_4 817968-818093 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP013662_5 973941-974089 Orphan I-F
2 spacers
PrimPol

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP013662_6 3187498-3187642 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP013662_7 3258942-3259581 TypeI-E I-E
10 spacers
cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP013662_8 3417713-3417802 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
NZ_CP013662_2 2.1|248720|60|NZ_CP013662|CRISPRCasFinder 248720-248779 60 NZ_CP013662.1 247978-248037 1 0.983

1. spacer 2.1|248720|60|NZ_CP013662|CRISPRCasFinder matches to position: 247978-248037, mismatch: 1, identity: 0.983 

tttacgccgcatccggcggttatgcgcagatgcctgatgcgacgctgacgcgtcttatca	CRISPR spacer
tttacgccgcatccggcggttgtgcgcagatgcctgatgcgacgctgacgcgtcttatca	Protospacer
*********************.**************************************

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP013662_1 1.1|65256|46|NZ_CP013662|CRISPRCasFinder 65256-65301 46 NZ_AP023206 Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence 165411-165456 3 0.935
NZ_CP013662_7 7.1|3258971|32|NZ_CP013662|CRT 3258971-3259002 32 LC542972 Escherichia coli IOMTU792 plasmid pIOMTU792 DNA, complete sequence 246937-246968 3 0.906
NZ_CP013662_8 8.1|3417744|28|NZ_CP013662|CRISPRCasFinder 3417744-3417771 28 MN694712 Marine virus AFVG_250M502, complete genome 31102-31129 4 0.857
NZ_CP013662_8 8.1|3417744|28|NZ_CP013662|CRISPRCasFinder 3417744-3417771 28 MN694478 Marine virus AFVG_250M504, complete genome 5065-5092 4 0.857
NZ_CP013662_8 8.1|3417744|28|NZ_CP013662|CRISPRCasFinder 3417744-3417771 28 MN694270 Marine virus AFVG_250M505, complete genome 5187-5214 4 0.857
NZ_CP013662_8 8.1|3417744|28|NZ_CP013662|CRISPRCasFinder 3417744-3417771 28 MN693238 Marine virus AFVG_25M402, complete genome 24599-24626 5 0.821
NZ_CP013662_7 7.1|3258971|32|NZ_CP013662|CRT 3258971-3259002 32 NZ_CP015038 Burkholderia cenocepacia strain 895 plasmid pBcp895-1, complete sequence 112768-112799 7 0.781
NZ_CP013662_7 7.6|3259276|32|NZ_CP013662|CRT,PILER-CR,CRISPRCasFinder 3259276-3259307 32 NZ_CP022192 Yangia pacifica strain YSBP01 plasmid unnamed2, complete sequence 200835-200866 7 0.781
NZ_CP013662_7 7.6|3259276|32|NZ_CP013662|CRT,PILER-CR,CRISPRCasFinder 3259276-3259307 32 MH576962 Streptomyces phage Satis, complete genome 156416-156447 7 0.781
NZ_CP013662_7 7.6|3259276|32|NZ_CP013662|CRT,PILER-CR,CRISPRCasFinder 3259276-3259307 32 MK620894 Streptomyces phage Kradal, complete genome 156079-156110 7 0.781
NZ_CP013662_7 7.6|3259276|32|NZ_CP013662|CRT,PILER-CR,CRISPRCasFinder 3259276-3259307 32 NZ_CP021355 Rhodococcus sp. S2-17 plasmid pRB98, complete sequence 907534-907565 7 0.781
NZ_CP013662_7 7.8|3259398|32|NZ_CP013662|CRT,PILER-CR,CRISPRCasFinder 3259398-3259429 32 NZ_AP022602 Mycobacterium gallinarum strain JCM 6399 plasmid pJCM6399 61998-62029 7 0.781
NZ_CP013662_7 7.9|3259459|33|NZ_CP013662|CRT,PILER-CR,CRISPRCasFinder 3259459-3259491 33 NC_016592 Burkholderia sp. YI23 plasmid byi_3p, complete sequence 54505-54537 7 0.788
NZ_CP013662_7 7.1|3258971|32|NZ_CP013662|CRT 3258971-3259002 32 NZ_AP014705 Methylobacterium aquaticum strain MA-22A plasmid pMaq22A_1p, complete sequence 1428097-1428128 8 0.75
NZ_CP013662_7 7.3|3259093|32|NZ_CP013662|CRT,PILER-CR,CRISPRCasFinder 3259093-3259124 32 MK448454 Streptococcus satellite phage Javan361, complete genome 9192-9223 8 0.75
NZ_CP013662_7 7.6|3259276|32|NZ_CP013662|CRT,PILER-CR,CRISPRCasFinder 3259276-3259307 32 NZ_CP016462 Blastomonas sp. RAC04 plasmid pBSY18_1, complete sequence 124180-124211 8 0.75
NZ_CP013662_7 7.6|3259276|32|NZ_CP013662|CRT,PILER-CR,CRISPRCasFinder 3259276-3259307 32 NZ_CP015523 Sphingomonas sp. NIC1 plasmid unnamed2, complete sequence 75457-75488 8 0.75
NZ_CP013662_7 7.6|3259276|32|NZ_CP013662|CRT,PILER-CR,CRISPRCasFinder 3259276-3259307 32 NZ_CP029986 Sphingomonas sp. FARSPH plasmid p01, complete sequence 87201-87232 8 0.75
NZ_CP013662_7 7.6|3259276|32|NZ_CP013662|CRT,PILER-CR,CRISPRCasFinder 3259276-3259307 32 NZ_CP022750 Sphingobium hydrophobicum strain C1 plasmid p4, complete sequence 37993-38024 8 0.75
NZ_CP013662_7 7.6|3259276|32|NZ_CP013662|CRT,PILER-CR,CRISPRCasFinder 3259276-3259307 32 NZ_CP009453 Sphingopyxis sp. 113P3 plasmid unnamed, complete sequence 212475-212506 8 0.75
NZ_CP013662_7 7.6|3259276|32|NZ_CP013662|CRT,PILER-CR,CRISPRCasFinder 3259276-3259307 32 NZ_CP023408 Streptomyces fungicidicus strain TXX3120 plasmid p1, complete sequence 271244-271275 8 0.75
NZ_CP013662_7 7.6|3259276|32|NZ_CP013662|CRT,PILER-CR,CRISPRCasFinder 3259276-3259307 32 NZ_CP016463 Bosea sp. RAC05 plasmid pBSY19_1, complete sequence 437772-437803 8 0.75
NZ_CP013662_7 7.6|3259276|32|NZ_CP013662|CRT,PILER-CR,CRISPRCasFinder 3259276-3259307 32 NZ_CP054603 Sulfitobacter pseudonitzschiae strain H46 plasmid unnamed4, complete sequence 82379-82410 8 0.75
NZ_CP013662_7 7.6|3259276|32|NZ_CP013662|CRT,PILER-CR,CRISPRCasFinder 3259276-3259307 32 NZ_CP012748 Paraburkholderia caribensis MBA4 plasmid unnamed, complete sequence 1416026-1416057 8 0.75
NZ_CP013662_7 7.1|3258971|32|NZ_CP013662|CRT 3258971-3259002 32 NZ_CP017563 Paraburkholderia sprentiae WSM5005 plasmid pl1WSM5005, complete sequence 141278-141309 9 0.719
NZ_CP013662_7 7.6|3259276|32|NZ_CP013662|CRT,PILER-CR,CRISPRCasFinder 3259276-3259307 32 NZ_CP017077 Novosphingobium resinovorum strain SA1 plasmid pSA2, complete sequence 470478-470509 9 0.719
NZ_CP013662_7 7.6|3259276|32|NZ_CP013662|CRT,PILER-CR,CRISPRCasFinder 3259276-3259307 32 NZ_CP030129 Indioceanicola profundi strain SCSIO 08040 plasmid unnamed3, complete sequence 64341-64372 9 0.719
NZ_CP013662_7 7.6|3259276|32|NZ_CP013662|CRT,PILER-CR,CRISPRCasFinder 3259276-3259307 32 NC_018022 Mycolicibacterium chubuense NBB4 plasmid pMYCCH.01, complete sequence 32175-32206 9 0.719
NZ_CP013662_7 7.6|3259276|32|NZ_CP013662|CRT,PILER-CR,CRISPRCasFinder 3259276-3259307 32 NZ_CP029358 Azospirillum sp. CFH 70021 plasmid unnamed3 247108-247139 9 0.719
NZ_CP013662_7 7.6|3259276|32|NZ_CP013662|CRT,PILER-CR,CRISPRCasFinder 3259276-3259307 32 NZ_CP030127 Indioceanicola profundi strain SCSIO 08040 plasmid unnamed1, complete sequence 353974-354005 9 0.719
NZ_CP013662_7 7.6|3259276|32|NZ_CP013662|CRT,PILER-CR,CRISPRCasFinder 3259276-3259307 32 NZ_CP022581 Gordonia rubripertincta strain CWB2 plasmid pGCWB2, complete sequence 65039-65070 9 0.719
NZ_CP013662_7 7.8|3259398|32|NZ_CP013662|CRT,PILER-CR,CRISPRCasFinder 3259398-3259429 32 NZ_CP026242 Citrobacter freundii complex sp. CFNIH9 plasmid pCFR-eb27, complete sequence 168728-168759 9 0.719
NZ_CP013662_7 7.8|3259398|32|NZ_CP013662|CRT,PILER-CR,CRISPRCasFinder 3259398-3259429 32 NZ_CP009883 Pantoea sp. PSNIH1 plasmid pPSP-a3e, complete sequence 5480-5511 9 0.719
NZ_CP013662_7 7.8|3259398|32|NZ_CP013662|CRT,PILER-CR,CRISPRCasFinder 3259398-3259429 32 NZ_CP010380 Enterobacter hormaechei subsp. hormaechei strain 34983 plasmid p34983-328.905kb, complete sequence 100871-100902 9 0.719
NZ_CP013662_7 7.8|3259398|32|NZ_CP013662|CRT,PILER-CR,CRISPRCasFinder 3259398-3259429 32 NZ_CP026171 Leclercia sp. LSNIH1 plasmid pLEC-1cb1, complete sequence 69667-69698 9 0.719
NZ_CP013662_7 7.8|3259398|32|NZ_CP013662|CRT,PILER-CR,CRISPRCasFinder 3259398-3259429 32 NZ_CP026196 Enterobacteriaceae bacterium ENNIH1 plasmid pENT-1f0b, complete sequence 140212-140243 9 0.719
NZ_CP013662_7 7.8|3259398|32|NZ_CP013662|CRT,PILER-CR,CRISPRCasFinder 3259398-3259429 32 NZ_AP021845 Azospira sp. I09 plasmid pAZI09, complete sequence 335649-335680 9 0.719
NZ_CP013662_7 7.8|3259398|32|NZ_CP013662|CRT,PILER-CR,CRISPRCasFinder 3259398-3259429 32 CP009869 Pantoea sp. PSNIH2 plasmid pPSP-75c, complete sequence 51816-51847 9 0.719
NZ_CP013662_7 7.8|3259398|32|NZ_CP013662|CRT,PILER-CR,CRISPRCasFinder 3259398-3259429 32 NZ_CP042479 Citrobacter freundii strain C50 plasmid pC50_001, complete sequence 136819-136850 9 0.719
NZ_CP013662_7 7.8|3259398|32|NZ_CP013662|CRT,PILER-CR,CRISPRCasFinder 3259398-3259429 32 NZ_CP026208 Escherichia coli strain ECONIH5 plasmid pECO-109b, complete sequence 50052-50083 9 0.719
NZ_CP013662_7 7.8|3259398|32|NZ_CP013662|CRT,PILER-CR,CRISPRCasFinder 3259398-3259429 32 NZ_CP032179 Citrobacter freundii strain AR_0116 plasmid unnamed1, complete sequence 65506-65537 9 0.719
NZ_CP013662_7 7.8|3259398|32|NZ_CP013662|CRT,PILER-CR,CRISPRCasFinder 3259398-3259429 32 NZ_CP026391 Leclercia sp. LSNIH3 plasmid pLEC-7c0d, complete sequence 6461-6492 9 0.719
NZ_CP013662_7 7.8|3259398|32|NZ_CP013662|CRT,PILER-CR,CRISPRCasFinder 3259398-3259429 32 NZ_CP029142 Klebsiella michiganensis strain AR375 plasmid unnamed2, complete sequence 256679-256710 9 0.719
NZ_CP013662_7 7.8|3259398|32|NZ_CP013662|CRT,PILER-CR,CRISPRCasFinder 3259398-3259429 32 NZ_CP031135 Escherichia coli strain CFSAN064035 plasmid pGMI17-003_1, complete sequence 47914-47945 9 0.719
NZ_CP013662_7 7.8|3259398|32|NZ_CP013662|CRT,PILER-CR,CRISPRCasFinder 3259398-3259429 32 NZ_CP011635 Klebsiella oxytoca strain CAV1374 plasmid pKPC_CAV1374, complete sequence 9471-9502 9 0.719
NZ_CP013662_7 7.8|3259398|32|NZ_CP013662|CRT,PILER-CR,CRISPRCasFinder 3259398-3259429 32 NZ_CP044111 Klebsiella michiganensis strain FDAARGOS_647 plasmid unnamed2 384417-384448 9 0.719
NZ_CP013662_7 7.6|3259276|32|NZ_CP013662|CRT,PILER-CR,CRISPRCasFinder 3259276-3259307 32 LR134122 Klebsiella aerogenes strain NCTC10006 genome assembly, plasmid: 2 358616-358647 10 0.688
NZ_CP013662_7 7.6|3259276|32|NZ_CP013662|CRT,PILER-CR,CRISPRCasFinder 3259276-3259307 32 NZ_CP054617 Azospirillum oryzae strain KACC 14407 plasmid unnamed3, complete sequence 669483-669514 10 0.688
NZ_CP013662_7 7.6|3259276|32|NZ_CP013662|CRT,PILER-CR,CRISPRCasFinder 3259276-3259307 32 NZ_CP045548 Streptomyces sp. SYP-A7193 plasmid unnamed1, complete sequence 411227-411258 10 0.688
NZ_CP013662_7 7.6|3259276|32|NZ_CP013662|CRT,PILER-CR,CRISPRCasFinder 3259276-3259307 32 MK359313 Gordonia phage Vasanti, complete genome 26718-26749 10 0.688
NZ_CP013662_7 7.6|3259276|32|NZ_CP013662|CRT,PILER-CR,CRISPRCasFinder 3259276-3259307 32 NZ_CP044550 Hydrogenophaga sp. BPS33 plasmid pBPS33-1, complete sequence 66884-66915 11 0.656
NZ_CP013662_7 7.6|3259276|32|NZ_CP013662|CRT,PILER-CR,CRISPRCasFinder 3259276-3259307 32 NZ_CP046574 Rhodococcus sp. WAY2 plasmid pRWAY02, complete sequence 383317-383348 11 0.656

1. spacer 1.1|65256|46|NZ_CP013662|CRISPRCasFinder matches to NZ_AP023206 (Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence) position: , mismatch: 3, identity: 0.935 

gaatgccggatgcggtttgcttatccggcctacaaaatcgcaacgt	CRISPR spacer
caatgccggatgcgctttgcttatccggcctacaaaatcgcagcgt	Protospacer
 ************* ***************************.***

2. spacer 7.1|3258971|32|NZ_CP013662|CRT matches to LC542972 (Escherichia coli IOMTU792 plasmid pIOMTU792 DNA, complete sequence) position: , mismatch: 3, identity: 0.906 

taagtgatatccatcatcgcatccagtgcgcc	CRISPR spacer
caagtgatgtccatcatcgcatccagtgcgtc	Protospacer
.*******.*********************.*

3. spacer 8.1|3417744|28|NZ_CP013662|CRISPRCasFinder matches to MN694712 (Marine virus AFVG_250M502, complete genome) position: , mismatch: 4, identity: 0.857 

tacacttttt-tagagatgaaaaaggtat	CRISPR spacer
-atagtttttacagagatgaaaaaggtat	Protospacer
 *.* ***** .*****************

4. spacer 8.1|3417744|28|NZ_CP013662|CRISPRCasFinder matches to MN694478 (Marine virus AFVG_250M504, complete genome) position: , mismatch: 4, identity: 0.857 

tacacttttt-tagagatgaaaaaggtat	CRISPR spacer
-atagtttttacagagatgaaaaaggtat	Protospacer
 *.* ***** .*****************

5. spacer 8.1|3417744|28|NZ_CP013662|CRISPRCasFinder matches to MN694270 (Marine virus AFVG_250M505, complete genome) position: , mismatch: 4, identity: 0.857 

tacacttttt-tagagatgaaaaaggtat	CRISPR spacer
-atagtttttacagagatgaaaaaggtat	Protospacer
 *.* ***** .*****************

6. spacer 8.1|3417744|28|NZ_CP013662|CRISPRCasFinder matches to MN693238 (Marine virus AFVG_25M402, complete genome) position: , mismatch: 5, identity: 0.821 

tacacttttttagagatgaaaaaggtat	CRISPR spacer
tagacctttttagagatgaaaaagcaaa	Protospacer
** **.******************  *

7. spacer 7.1|3258971|32|NZ_CP013662|CRT matches to NZ_CP015038 (Burkholderia cenocepacia strain 895 plasmid pBcp895-1, complete sequence) position: , mismatch: 7, identity: 0.781 

taagtgat-atccatcatcgcatccagtgcgcc	CRISPR spacer
-ggttgatcgtccttcatcgcagccagtgcgcc	Protospacer
 .. **** .*** ******** **********

8. spacer 7.6|3259276|32|NZ_CP013662|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP022192 (Yangia pacifica strain YSBP01 plasmid unnamed2, complete sequence) position: , mismatch: 7, identity: 0.781 

--gtaaattgcgacgtcctgcgccagcagctcga	CRISPR spacer
catcagat--cgacgtcctgcgccagcaactcgg	Protospacer
   .*.**  ******************.****.

9. spacer 7.6|3259276|32|NZ_CP013662|CRT,PILER-CR,CRISPRCasFinder matches to MH576962 (Streptomyces phage Satis, complete genome) position: , mismatch: 7, identity: 0.781 

-gtaaattgcgacgtcctgcgccagcagctcga	CRISPR spacer
cgtctcct-tgacggcctgcgccagcagctcga	Protospacer
 **   .* .**** ******************

10. spacer 7.6|3259276|32|NZ_CP013662|CRT,PILER-CR,CRISPRCasFinder matches to MK620894 (Streptomyces phage Kradal, complete genome) position: , mismatch: 7, identity: 0.781 

-gtaaattgcgacgtcctgcgccagcagctcga	CRISPR spacer
cgtctcct-tgacggcctgcgccagcagctcga	Protospacer
 **   .* .**** ******************

11. spacer 7.6|3259276|32|NZ_CP013662|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP021355 (Rhodococcus sp. S2-17 plasmid pRB98, complete sequence) position: , mismatch: 7, identity: 0.781 

gtaaattg-cgacgtcctgcgccagcagctcga	CRISPR spacer
-cacttcgacgacgacctgcgccagcaactcga	Protospacer
 .*  *.* ***** ************.*****

12. spacer 7.8|3259398|32|NZ_CP013662|CRT,PILER-CR,CRISPRCasFinder matches to NZ_AP022602 (Mycobacterium gallinarum strain JCM 6399 plasmid pJCM6399) position: , mismatch: 7, identity: 0.781 

tacaggaa---agaatccgccaacggcgacagggg	CRISPR spacer
---atgcacccagaatccgccaccggcgaccgggg	Protospacer
   * * *   *********** ******* ****

13. spacer 7.9|3259459|33|NZ_CP013662|CRT,PILER-CR,CRISPRCasFinder matches to NC_016592 (Burkholderia sp. YI23 plasmid byi_3p, complete sequence) position: , mismatch: 7, identity: 0.788 

gctgcgagatatcgccagccgcggattaatcca-	CRISPR spacer
gctgcgagatatcgccggctgcgg-ctgacctag	Protospacer
****************.**.**** .*.*.*.*

14. spacer 7.1|3258971|32|NZ_CP013662|CRT matches to NZ_AP014705 (Methylobacterium aquaticum strain MA-22A plasmid pMaq22A_1p, complete sequence) position: , mismatch: 8, identity: 0.75 

taagtg---atatccatcatcgcatccagtgcgcc	CRISPR spacer
---gtgcgcccctccatcaccgcttccagtgcgcc	Protospacer
   ***    . *******.*** ***********

15. spacer 7.3|3259093|32|NZ_CP013662|CRT,PILER-CR,CRISPRCasFinder matches to MK448454 (Streptococcus satellite phage Javan361, complete genome) position: , mismatch: 8, identity: 0.75 

tgaagcatcaaacatttggtggaccaaacgga	CRISPR spacer
tgaagaatcaaaaatttggtggattgataaga	Protospacer
***** ****** **********...*  .**

16. spacer 7.6|3259276|32|NZ_CP013662|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP016462 (Blastomonas sp. RAC04 plasmid pBSY18_1, complete sequence) position: , mismatch: 8, identity: 0.75 

gtaaattgcgacgtcctgcgccagcagctcga	CRISPR spacer
cgcgacagcgacgtcctgcgccagctgttcga	Protospacer
   .*. ****************** *.****

17. spacer 7.6|3259276|32|NZ_CP013662|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP015523 (Sphingomonas sp. NIC1 plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.75 

gtaaattgcgacgtcctgcgccagcagctcga	CRISPR spacer
ttcgacggcgacggccagcgccagcagctcgc	Protospacer
 * .*. ****** ** **************

18. spacer 7.6|3259276|32|NZ_CP013662|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP029986 (Sphingomonas sp. FARSPH plasmid p01, complete sequence) position: , mismatch: 8, identity: 0.75 

gtaaattgcgacgtcctgcgccagcagctcga	CRISPR spacer
ttcgacggcgacggccagcgccagcagctcgc	Protospacer
 * .*. ****** ** **************

19. spacer 7.6|3259276|32|NZ_CP013662|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP022750 (Sphingobium hydrophobicum strain C1 plasmid p4, complete sequence) position: , mismatch: 8, identity: 0.75 

gtaaattgcgacgtcctgcgccagcagctcga	CRISPR spacer
ttcgacggcgacggccagcgccagcagctcgc	Protospacer
 * .*. ****** ** **************

20. spacer 7.6|3259276|32|NZ_CP013662|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP009453 (Sphingopyxis sp. 113P3 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.75 

gtaaattgcgacgtcctgcgccagcagctcga	CRISPR spacer
ttcgacggcgacggccagcgccagcagctcgc	Protospacer
 * .*. ****** ** **************

21. spacer 7.6|3259276|32|NZ_CP013662|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP023408 (Streptomyces fungicidicus strain TXX3120 plasmid p1, complete sequence) position: , mismatch: 8, identity: 0.75 

gtaaattgcgacgtcctgcgccagcagctcga	CRISPR spacer
ggtgaagacgacgtcctcggccagcagctcga	Protospacer
*  .*  .*********  *************

22. spacer 7.6|3259276|32|NZ_CP013662|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP016463 (Bosea sp. RAC05 plasmid pBSY19_1, complete sequence) position: , mismatch: 8, identity: 0.75 

gtaaattgcgacgtcctgcgccagcagctcga	CRISPR spacer
gagcagcgcgacatcctacgccagcagctcgc	Protospacer
* . * .*****.****.*************

23. spacer 7.6|3259276|32|NZ_CP013662|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP054603 (Sulfitobacter pseudonitzschiae strain H46 plasmid unnamed4, complete sequence) position: , mismatch: 8, identity: 0.75 

gtaaat-tgcgacgtcctgcgccagcagctcga	CRISPR spacer
-tacctgcgcgatgtcctgcgccagcaggtccg	Protospacer
 **  * .****.*************** ** .

24. spacer 7.6|3259276|32|NZ_CP013662|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP012748 (Paraburkholderia caribensis MBA4 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.75 

gtaaattgcgacgtcctgcgccagcagctcga	CRISPR spacer
ggccatcacgccgtcctgcgccagcagatcgg	Protospacer
*   **..** **************** ***.

25. spacer 7.1|3258971|32|NZ_CP013662|CRT matches to NZ_CP017563 (Paraburkholderia sprentiae WSM5005 plasmid pl1WSM5005, complete sequence) position: , mismatch: 9, identity: 0.719 

taagtgatatccatcatcgcatccagtgcgcc	CRISPR spacer
ctcatcgcatccatcatcggttccagtgcgcc	Protospacer
.  .* ..***********  ***********

26. spacer 7.6|3259276|32|NZ_CP013662|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP017077 (Novosphingobium resinovorum strain SA1 plasmid pSA2, complete sequence) position: , mismatch: 9, identity: 0.719 

gtaaattgcgacgtcctgcgccagcagctcga	CRISPR spacer
cggcgcggcgatgtcctgcgccagcagctcca	Protospacer
  . .. ****.****************** *

27. spacer 7.6|3259276|32|NZ_CP013662|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP030129 (Indioceanicola profundi strain SCSIO 08040 plasmid unnamed3, complete sequence) position: , mismatch: 9, identity: 0.719 

gtaaattgcgacgtcctgcgccagcagctcga	CRISPR spacer
ggccgcggcgacgtcctgcgccacccgctcgc	Protospacer
*   .. **************** * *****

28. spacer 7.6|3259276|32|NZ_CP013662|CRT,PILER-CR,CRISPRCasFinder matches to NC_018022 (Mycolicibacterium chubuense NBB4 plasmid pMYCCH.01, complete sequence) position: , mismatch: 9, identity: 0.719 

gtaaattgcgacgtcctgcgccagcagctcga	CRISPR spacer
tttgacgtcgaagtccagcgccagcagctcgg	Protospacer
 * .*.  *** **** **************.

29. spacer 7.6|3259276|32|NZ_CP013662|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP029358 (Azospirillum sp. CFH 70021 plasmid unnamed3) position: , mismatch: 9, identity: 0.719 

gtaaattgcgacgtcctgcgccagcagctcga	CRISPR spacer
cagcgtcgggacgtcctccgccggcagctcga	Protospacer
  . .*.* ******** ****.*********

30. spacer 7.6|3259276|32|NZ_CP013662|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP030127 (Indioceanicola profundi strain SCSIO 08040 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.719 

gtaaattgcgacgtcctgcgccagcagctcga	CRISPR spacer
attgccggcgacatcccgcgccagcagctcca	Protospacer
.* . . *****.***.************* *

31. spacer 7.6|3259276|32|NZ_CP013662|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP022581 (Gordonia rubripertincta strain CWB2 plasmid pGCWB2, complete sequence) position: , mismatch: 9, identity: 0.719 

gtaaattgcgacgtcctgcgccagcagctcga	CRISPR spacer
gcccagatcgaggtgctgcgccagcagctcgc	Protospacer
*.  *   *** ** ****************

32. spacer 7.8|3259398|32|NZ_CP013662|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP026242 (Citrobacter freundii complex sp. CFNIH9 plasmid pCFR-eb27, complete sequence) position: , mismatch: 9, identity: 0.719 

tacaggaaagaatccgccaacggcgacagggg	CRISPR spacer
gcgaggaaagaagccgccgacggcgaggacgg	Protospacer
   ********* *****.******* .. **

33. spacer 7.8|3259398|32|NZ_CP013662|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP009883 (Pantoea sp. PSNIH1 plasmid pPSP-a3e, complete sequence) position: , mismatch: 9, identity: 0.719 

tacaggaaagaatccgccaacggcgacagggg	CRISPR spacer
gcgaggaaagaagccgccgacggcgaggacgg	Protospacer
   ********* *****.******* .. **

34. spacer 7.8|3259398|32|NZ_CP013662|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP010380 (Enterobacter hormaechei subsp. hormaechei strain 34983 plasmid p34983-328.905kb, complete sequence) position: , mismatch: 9, identity: 0.719 

tacaggaaagaatccgccaacggcgacagggg	CRISPR spacer
gcgaggaaagaagccgccgacggcgaggacgg	Protospacer
   ********* *****.******* .. **

35. spacer 7.8|3259398|32|NZ_CP013662|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP026171 (Leclercia sp. LSNIH1 plasmid pLEC-1cb1, complete sequence) position: , mismatch: 9, identity: 0.719 

tacaggaaagaatccgccaacggcgacagggg	CRISPR spacer
gcgaggaaagaagccgccgacggcgaggacgg	Protospacer
   ********* *****.******* .. **

36. spacer 7.8|3259398|32|NZ_CP013662|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP026196 (Enterobacteriaceae bacterium ENNIH1 plasmid pENT-1f0b, complete sequence) position: , mismatch: 9, identity: 0.719 

tacaggaaagaatccgccaacggcgacagggg	CRISPR spacer
gcgaggaaagaagccgccgacggcgaggacgg	Protospacer
   ********* *****.******* .. **

37. spacer 7.8|3259398|32|NZ_CP013662|CRT,PILER-CR,CRISPRCasFinder matches to NZ_AP021845 (Azospira sp. I09 plasmid pAZI09, complete sequence) position: , mismatch: 9, identity: 0.719 

tacaggaaagaatccgccaacggcgacagggg	CRISPR spacer
gcgaggaaagaagccgccgacggcgaggacgg	Protospacer
   ********* *****.******* .. **

38. spacer 7.8|3259398|32|NZ_CP013662|CRT,PILER-CR,CRISPRCasFinder matches to CP009869 (Pantoea sp. PSNIH2 plasmid pPSP-75c, complete sequence) position: , mismatch: 9, identity: 0.719 

tacaggaaagaatccgccaacggcgacagggg	CRISPR spacer
gcgaggaaagaagccgccgacggcgaggacgg	Protospacer
   ********* *****.******* .. **

39. spacer 7.8|3259398|32|NZ_CP013662|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP042479 (Citrobacter freundii strain C50 plasmid pC50_001, complete sequence) position: , mismatch: 9, identity: 0.719 

tacaggaaagaatccgccaacggcgacagggg	CRISPR spacer
gcgaggaaagaagccgccgacggcgaggacgg	Protospacer
   ********* *****.******* .. **

40. spacer 7.8|3259398|32|NZ_CP013662|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP026208 (Escherichia coli strain ECONIH5 plasmid pECO-109b, complete sequence) position: , mismatch: 9, identity: 0.719 

tacaggaaagaatccgccaacggcgacagggg	CRISPR spacer
gcgaggaaagaagccgccgacggcgaggacgg	Protospacer
   ********* *****.******* .. **

41. spacer 7.8|3259398|32|NZ_CP013662|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP032179 (Citrobacter freundii strain AR_0116 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.719 

tacaggaaagaatccgccaacggcgacagggg	CRISPR spacer
gcgaggaaagaagccgccgacggcgaggacgg	Protospacer
   ********* *****.******* .. **

42. spacer 7.8|3259398|32|NZ_CP013662|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP026391 (Leclercia sp. LSNIH3 plasmid pLEC-7c0d, complete sequence) position: , mismatch: 9, identity: 0.719 

tacaggaaagaatccgccaacggcgacagggg	CRISPR spacer
gcgaggaaagaagccgccgacggcgaggacgg	Protospacer
   ********* *****.******* .. **

43. spacer 7.8|3259398|32|NZ_CP013662|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP029142 (Klebsiella michiganensis strain AR375 plasmid unnamed2, complete sequence) position: , mismatch: 9, identity: 0.719 

tacaggaaagaatccgccaacggcgacagggg	CRISPR spacer
gcgaggaaagaagccgccgacggcgaggacgg	Protospacer
   ********* *****.******* .. **

44. spacer 7.8|3259398|32|NZ_CP013662|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP031135 (Escherichia coli strain CFSAN064035 plasmid pGMI17-003_1, complete sequence) position: , mismatch: 9, identity: 0.719 

tacaggaaagaatccgccaacggcgacagggg	CRISPR spacer
gcgaggaaagaagccgccgacggcgaggacgg	Protospacer
   ********* *****.******* .. **

45. spacer 7.8|3259398|32|NZ_CP013662|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP011635 (Klebsiella oxytoca strain CAV1374 plasmid pKPC_CAV1374, complete sequence) position: , mismatch: 9, identity: 0.719 

tacaggaaagaatccgccaacggcgacagggg	CRISPR spacer
gcgaggaaagaagccgccgacggcgaggacgg	Protospacer
   ********* *****.******* .. **

46. spacer 7.8|3259398|32|NZ_CP013662|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP044111 (Klebsiella michiganensis strain FDAARGOS_647 plasmid unnamed2) position: , mismatch: 9, identity: 0.719 

tacaggaaagaatccgccaacggcgacagggg	CRISPR spacer
gcgaggaaagaagccgccgacggcgaggacgg	Protospacer
   ********* *****.******* .. **

47. spacer 7.6|3259276|32|NZ_CP013662|CRT,PILER-CR,CRISPRCasFinder matches to LR134122 (Klebsiella aerogenes strain NCTC10006 genome assembly, plasmid: 2) position: , mismatch: 10, identity: 0.688 

gtaaattgcgacgtcctgcgccagcagctcga	CRISPR spacer
ccggcaggcgacgtgctgcgccagcaggtcaa	Protospacer
 ...   ******* ************ **.*

48. spacer 7.6|3259276|32|NZ_CP013662|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP054617 (Azospirillum oryzae strain KACC 14407 plasmid unnamed3, complete sequence) position: , mismatch: 10, identity: 0.688 

gtaaattgcgacgtcctgcgccagcagctcga	CRISPR spacer
ttcgccatcgacgacctgcgccggcagctcgc	Protospacer
 * . .  ***** ********.********

49. spacer 7.6|3259276|32|NZ_CP013662|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP045548 (Streptomyces sp. SYP-A7193 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.688 

gtaaattgcgacgtcctgcgccagcagctcga	CRISPR spacer
gccgcggccgacgtcctgcgccggcacctcgt	Protospacer
*. .    **************.*** ****

50. spacer 7.6|3259276|32|NZ_CP013662|CRT,PILER-CR,CRISPRCasFinder matches to MK359313 (Gordonia phage Vasanti, complete genome) position: , mismatch: 10, identity: 0.688 

gtaaattgcgacgtcctgcgccagcagctcga	CRISPR spacer
ctcgcactcgacggccagcgccagcagctcgg	Protospacer
 * .  . ***** ** **************.

51. spacer 7.6|3259276|32|NZ_CP013662|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP044550 (Hydrogenophaga sp. BPS33 plasmid pBPS33-1, complete sequence) position: , mismatch: 11, identity: 0.656 

gtaaattgcgacgtcctgcgccagcagctcga	CRISPR spacer
caggtccacgacgtcctgcgccagcatcacgt	Protospacer
  .. ...****************** * **

52. spacer 7.6|3259276|32|NZ_CP013662|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP046574 (Rhodococcus sp. WAY2 plasmid pRWAY02, complete sequence) position: , mismatch: 11, identity: 0.656 

gtaaattgcgacgtcctgcgccagcagctcga	CRISPR spacer
acgctgcccgacgtcctgcgccaagagctcgg	Protospacer
...   . ***************. ******.

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 248139 : 325241 88 Enterobacteria_phage(36.67%) integrase,transposase,holin,capsid,head,terminase,protease,portal,tail attL 312662:312681|attR 325384:325403
DBSCAN-SWA_2 901663 : 975862 82 Salmonella_phage(64.71%) integrase,plate,capsid,head,terminase,protease,lysis,portal,tail attL 904060:904076|attR 976561:976577
DBSCAN-SWA_3 1328223 : 1381492 66 Escherichia_phage(38.0%) integrase,holin,tRNA,terminase,protease,portal,tail attL 1319708:1319723|attR 1352449:1352464
DBSCAN-SWA_4 1484043 : 1546744 83 Escherichia_phage(42.0%) integrase,transposase,holin,plate,capsid,head,terminase,protease,lysis,portal,tail attL 1477008:1477022|attR 1489866:1489880
DBSCAN-SWA_5 1835801 : 1851256 12 Enterobacteria_phage(66.67%) tail NA
DBSCAN-SWA_6 1854291 : 1895532 59 Enterobacteria_phage(36.84%) integrase,transposase,terminase,lysis,portal,tail attL 1854403:1854418|attR 1895623:1895638
DBSCAN-SWA_7 2148225 : 2243892 106 Enterobacteria_phage(42.62%) integrase,tRNA,holin,capsid,head,terminase,protease,portal,tail attL 2168098:2168113|attR 2239583:2239598
DBSCAN-SWA_8 2330241 : 2413532 104 Escherichia_phage(37.5%) integrase,transposase,plate,holin,capsid,head,terminase,portal,tail attL 2331046:2331061|attR 2422019:2422034
DBSCAN-SWA_9 2621504 : 2630949 10 Enterobacteria_phage(85.71%) NA NA
DBSCAN-SWA_10 3238477 : 3251577 12 Escherichia_phage(50.0%) NA NA
DBSCAN-SWA_11 3395205 : 3401590 9 Escherichia_phage(66.67%) NA NA
DBSCAN-SWA_12 3504563 : 3548103 42 Stx2-converting_phage(50.0%) protease,integrase,transposase,tRNA attL 3493942:3493957|attR 3557752:3557767
DBSCAN-SWA_13 4337477 : 4347489 10 Enterobacteria_phage(87.5%) integrase attL 4332694:4332707|attR 4347419:4347432
DBSCAN-SWA_14 5046708 : 5183829 153 Enterobacteria_phage(22.68%) integrase,transposase,plate,holin,capsid,head,terminase,protease,tail attL 5058835:5058852|attR 5145845:5145862

Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage