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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP015917 Escherichia coli strain 210205630 isolate 210205630 plasmid pSLy5, complete sequence 0 crisprs NA 0 0 0 0
NZ_CP015912 Escherichia coli strain 210205630 chromosome, complete genome 4 crisprs c2c9_V-U4,DEDDh,DinG,cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e 0 20 11 0
NZ_CP015913 Escherichia coli strain 210205630 isolate 210205630 plasmid pSLy1, complete sequence 0 crisprs c2c9_V-U4 0 0 0 0
NZ_CP015916 Escherichia coli strain 210205630 isolate 210205630 plasmid pSLy4, complete sequence 0 crisprs RT,cas14j 0 0 0 0
NZ_CP015914 Escherichia coli strain 210205630 isolate 210205630 plasmid pSLy2, complete sequence 0 crisprs NA 0 0 6 0
NZ_CP015915 Escherichia coli strain 210205630 isolate 210205630 plasmid pSLy3, complete sequence 0 crisprs RT,DEDDh 0 0 1 0

Results visualization

1. NZ_CP015912
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP015912_1 998664-998804 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP015912_2 1763932-1764204 TypeI-E I-E
4 spacers
cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP015912_3 1789904-1791152 Unclear I-E
20 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP015912_4 4205740-4205836 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP015912_2 2.1|1763961|32|NZ_CP015912|CRT 1763961-1763992 32 LC542972 Escherichia coli IOMTU792 plasmid pIOMTU792 DNA, complete sequence 246937-246968 3 0.906
NZ_CP015912_3 3.3|1790055|32|NZ_CP015912|CRISPRCasFinder,CRT 1790055-1790086 32 NZ_CP017563 Paraburkholderia sprentiae WSM5005 plasmid pl1WSM5005, complete sequence 632328-632359 5 0.844
NZ_CP015912_2 2.2|1764022|32|NZ_CP015912|CRT,PILER-CR,CRISPRCasFinder 1764022-1764053 32 NZ_CP050442 Tolypothrix sp. PCC 7910 plasmid unnamed2, complete sequence 41503-41534 6 0.812
NZ_CP015912_2 2.3|1764083|32|NZ_CP015912|CRT,PILER-CR,CRISPRCasFinder 1764083-1764114 32 CP000662 Rhodobacter sphaeroides ATCC 17025 plasmid pRSPA01, complete sequence 649166-649197 6 0.812
NZ_CP015912_2 2.1|1763961|32|NZ_CP015912|CRT 1763961-1763992 32 NZ_CP015038 Burkholderia cenocepacia strain 895 plasmid pBcp895-1, complete sequence 112768-112799 7 0.781
NZ_CP015912_3 3.1|1789933|32|NZ_CP015912|CRISPRCasFinder,CRT 1789933-1789964 32 KR080197 Mycobacterium phage FlagStaff, complete genome 15476-15507 7 0.781
NZ_CP015912_3 3.5|1790177|32|NZ_CP015912|CRISPRCasFinder,CRT 1790177-1790208 32 NC_024792 Bacillus phage Bobb, complete genome 57906-57937 7 0.781
NZ_CP015912_3 3.12|1790604|32|NZ_CP015912|CRISPRCasFinder,CRT,PILER-CR 1790604-1790635 32 NZ_CP017077 Novosphingobium resinovorum strain SA1 plasmid pSA2, complete sequence 831891-831922 7 0.781
NZ_CP015912_3 3.12|1790604|32|NZ_CP015912|CRISPRCasFinder,CRT,PILER-CR 1790604-1790635 32 NZ_CP034813 Paracoccus sp. Arc7-R13 plasmid unnamed2, complete sequence 109991-110022 7 0.781
NZ_CP015912_2 2.1|1763961|32|NZ_CP015912|CRT 1763961-1763992 32 NZ_AP014705 Methylobacterium aquaticum strain MA-22A plasmid pMaq22A_1p, complete sequence 1428097-1428128 8 0.75
NZ_CP015912_2 2.3|1764083|32|NZ_CP015912|CRT,PILER-CR,CRISPRCasFinder 1764083-1764114 32 MT889371 Microbacterium phage DelaGarza, complete genome 35549-35580 8 0.75
NZ_CP015912_3 3.1|1789933|32|NZ_CP015912|CRISPRCasFinder,CRT 1789933-1789964 32 NZ_CP014600 Yangia sp. CCB-MM3 plasmid unnamed4, complete sequence 15418-15449 8 0.75
NZ_CP015912_3 3.3|1790055|32|NZ_CP015912|CRISPRCasFinder,CRT 1790055-1790086 32 NZ_CP029830 Azospirillum ramasamyi strain M2T2B2 plasmid unnamed1, complete sequence 460575-460606 8 0.75
NZ_CP015912_3 3.5|1790177|32|NZ_CP015912|CRISPRCasFinder,CRT 1790177-1790208 32 NZ_CP016891 Pantoea agglomerans strain C410P1 plasmid unnamed2, complete sequence 114699-114730 8 0.75
NZ_CP015912_3 3.6|1790238|32|NZ_CP015912|CRISPRCasFinder,CRT,PILER-CR 1790238-1790269 32 CP000876 Herpetosiphon aurantiacus DSM 785 plasmid pHAU01, complete sequence 90670-90701 8 0.75
NZ_CP015912_3 3.7|1790299|32|NZ_CP015912|CRISPRCasFinder,CRT,PILER-CR 1790299-1790330 32 NC_014825 Ruminococcus albus 7 = DSM 20455 plasmid pRUMAL02, complete sequence 131301-131332 8 0.75
NZ_CP015912_3 3.10|1790482|32|NZ_CP015912|CRISPRCasFinder,CRT,PILER-CR 1790482-1790513 32 MK416007 Klebsiella phage ST405-OXA48phi1.2, complete genome 5007-5038 8 0.75
NZ_CP015912_3 3.12|1790604|32|NZ_CP015912|CRISPRCasFinder,CRT,PILER-CR 1790604-1790635 32 NZ_CP040764 Paracoccus sp. 2251 plasmid unnamed3, complete sequence 159957-159988 8 0.75
NZ_CP015912_3 3.18|1790970|32|NZ_CP015912|CRISPRCasFinder,CRT,PILER-CR 1790970-1791001 32 MF773750 Mycobacterium phage OKCentral2016, complete genome 32038-32069 8 0.75
NZ_CP015912_3 3.18|1790970|32|NZ_CP015912|CRISPRCasFinder,CRT,PILER-CR 1790970-1791001 32 JX307704 Mycobacterium virus Goose, complete genome 32135-32166 8 0.75
NZ_CP015912_2 2.1|1763961|32|NZ_CP015912|CRT 1763961-1763992 32 NZ_CP017563 Paraburkholderia sprentiae WSM5005 plasmid pl1WSM5005, complete sequence 141278-141309 9 0.719
NZ_CP015912_2 2.3|1764083|32|NZ_CP015912|CRT,PILER-CR,CRISPRCasFinder 1764083-1764114 32 NZ_CP044425 Paracoccus pantotrophus strain DSM 2944 plasmid pPAN2, complete sequence 203634-203665 9 0.719
NZ_CP015912_3 3.1|1789933|32|NZ_CP015912|CRISPRCasFinder,CRT 1789933-1789964 32 NZ_CP009292 Novosphingobium pentaromativorans US6-1 plasmid pLA3, complete sequence 139210-139241 9 0.719
NZ_CP015912_3 3.2|1789994|32|NZ_CP015912|CRISPRCasFinder,CRT 1789994-1790025 32 NZ_CP030074 Streptomyces sp. ZFG47 plasmid unnamed1, complete sequence 224876-224907 9 0.719
NZ_CP015912_3 3.3|1790055|32|NZ_CP015912|CRISPRCasFinder,CRT 1790055-1790086 32 NZ_CP006988 Rhizobium sp. IE4771 plasmid pRetIE4771b, complete sequence 91348-91379 9 0.719
NZ_CP015912_3 3.7|1790299|32|NZ_CP015912|CRISPRCasFinder,CRT,PILER-CR 1790299-1790330 32 NZ_CP005987 Acidithiobacillus caldus ATCC 51756 plasmid megap mpAca1.1, complete sequence 65430-65461 9 0.719
NZ_CP015912_3 3.7|1790299|32|NZ_CP015912|CRISPRCasFinder,CRT,PILER-CR 1790299-1790330 32 MN163281 Klebsiella phage KpCHEMY26, complete genome 2153-2184 9 0.719
NZ_CP015912_3 3.8|1790360|32|NZ_CP015912|CRISPRCasFinder,CRT,PILER-CR 1790360-1790391 32 NZ_CP010863 Marinovum algicola DG 898 plasmid pMaD8, complete sequence 80627-80658 9 0.719
NZ_CP015912_3 3.9|1790421|32|NZ_CP015912|CRISPRCasFinder,CRT,PILER-CR 1790421-1790452 32 NZ_CP036355 Bacillus sp. SYJ plasmid unnamed1, complete sequence 40503-40534 9 0.719
NZ_CP015912_3 3.9|1790421|32|NZ_CP015912|CRISPRCasFinder,CRT,PILER-CR 1790421-1790452 32 NZ_CP053290 Bacillus cereus strain WPySW2 plasmid unnamed, complete sequence 150072-150103 9 0.719
NZ_CP015912_3 3.9|1790421|32|NZ_CP015912|CRISPRCasFinder,CRT,PILER-CR 1790421-1790452 32 NZ_CP045534 Bacillaceae bacterium C02 plasmid unnamed1, complete sequence 2445-2476 9 0.719
NZ_CP015912_3 3.11|1790543|32|NZ_CP015912|CRISPRCasFinder,CRT,PILER-CR 1790543-1790574 32 MN698241 Pelagibacter phage HTVC027P, complete genome 53788-53819 9 0.719
NZ_CP015912_3 3.14|1790726|32|NZ_CP015912|CRISPRCasFinder,CRT,PILER-CR 1790726-1790757 32 CP034667 Proteus vulgaris strain PvSC3 plasmid pPvSC3, complete sequence 11529-11560 9 0.719
NZ_CP015912_3 3.14|1790726|32|NZ_CP015912|CRISPRCasFinder,CRT,PILER-CR 1790726-1790757 32 NZ_CP013104 Paraburkholderia caribensis strain MWAP64 plasmid 1, complete sequence 1243128-1243159 9 0.719
NZ_CP015912_3 3.23|1790054|34|NZ_CP015912|PILER-CR 1790054-1790087 34 NZ_CP029830 Azospirillum ramasamyi strain M2T2B2 plasmid unnamed1, complete sequence 460575-460608 9 0.735
NZ_CP015912_3 3.1|1789933|32|NZ_CP015912|CRISPRCasFinder,CRT 1789933-1789964 32 NZ_CP012383 Streptomyces ambofaciens ATCC 23877 plasmid pSAM1, complete sequence 14130-14161 10 0.688
NZ_CP015912_3 3.15|1790787|32|NZ_CP015912|CRISPRCasFinder,CRT,PILER-CR 1790787-1790818 32 NZ_CP043499 Rhizobium grahamii strain BG7 plasmid unnamed, complete sequence 65082-65113 10 0.688
NZ_CP015912_3 3.21|1789932|34|NZ_CP015912|PILER-CR 1789932-1789965 34 NZ_CP014600 Yangia sp. CCB-MM3 plasmid unnamed4, complete sequence 15418-15451 10 0.706
NZ_CP015912_3 3.23|1790054|34|NZ_CP015912|PILER-CR 1790054-1790087 34 NZ_CP006988 Rhizobium sp. IE4771 plasmid pRetIE4771b, complete sequence 91346-91379 10 0.706
NZ_CP015912_3 3.21|1789932|34|NZ_CP015912|PILER-CR 1789932-1789965 34 NZ_CP009292 Novosphingobium pentaromativorans US6-1 plasmid pLA3, complete sequence 139208-139241 11 0.676
NZ_CP015912_3 3.22|1789993|34|NZ_CP015912|PILER-CR 1789993-1790026 34 NZ_CP030074 Streptomyces sp. ZFG47 plasmid unnamed1, complete sequence 224874-224907 11 0.676

1. spacer 2.1|1763961|32|NZ_CP015912|CRT matches to LC542972 (Escherichia coli IOMTU792 plasmid pIOMTU792 DNA, complete sequence) position: , mismatch: 3, identity: 0.906

taagtgatatccatcatcgcatccagtgcgcc	CRISPR spacer
caagtgatgtccatcatcgcatccagtgcgtc	Protospacer
.*******.*********************.*

2. spacer 3.3|1790055|32|NZ_CP015912|CRISPRCasFinder,CRT matches to NZ_CP017563 (Paraburkholderia sprentiae WSM5005 plasmid pl1WSM5005, complete sequence) position: , mismatch: 5, identity: 0.844

gcccgcct-cgtcggtgtattccgcgagatcgc	CRISPR spacer
-ccggcctacgtcgacgtattccgcgagatcgt	Protospacer
 ** **** *****..****************.

3. spacer 2.2|1764022|32|NZ_CP015912|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP050442 (Tolypothrix sp. PCC 7910 plasmid unnamed2, complete sequence) position: , mismatch: 6, identity: 0.812

aaaaccaaacttctccataaattccatagccg	CRISPR spacer
attactaaacttctgcataaattccataggag	Protospacer
*  **.******** **************  *

4. spacer 2.3|1764083|32|NZ_CP015912|CRT,PILER-CR,CRISPRCasFinder matches to CP000662 (Rhodobacter sphaeroides ATCC 17025 plasmid pRSPA01, complete sequence) position: , mismatch: 6, identity: 0.812

acgcgcgtaccggatcgcggacaacaaattgc	CRISPR spacer
gcgggcgtaccgcatcgcggacaacaagctga	Protospacer
.** ******** **************..** 

5. spacer 2.1|1763961|32|NZ_CP015912|CRT matches to NZ_CP015038 (Burkholderia cenocepacia strain 895 plasmid pBcp895-1, complete sequence) position: , mismatch: 7, identity: 0.781

taagtgat-atccatcatcgcatccagtgcgcc	CRISPR spacer
-ggttgatcgtccttcatcgcagccagtgcgcc	Protospacer
 .. **** .*** ******** **********

6. spacer 3.1|1789933|32|NZ_CP015912|CRISPRCasFinder,CRT matches to KR080197 (Mycobacterium phage FlagStaff, complete genome) position: , mismatch: 7, identity: 0.781

aacatcggaaacggcttcgcggcggcggcgtc	CRISPR spacer
aacccggcgaacggcatcgcggcgccggcgtc	Protospacer
*** . * .****** ******** *******

7. spacer 3.5|1790177|32|NZ_CP015912|CRISPRCasFinder,CRT matches to NC_024792 (Bacillus phage Bobb, complete genome) position: , mismatch: 7, identity: 0.781

gtcgccgggttgattttccatgatgattttta	CRISPR spacer
ttcgataggtagattttccatgatggtttttg	Protospacer
 *** ..*** **************.*****.

8. spacer 3.12|1790604|32|NZ_CP015912|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP017077 (Novosphingobium resinovorum strain SA1 plasmid pSA2, complete sequence) position: , mismatch: 7, identity: 0.781

tgcgttgctatgcagatcgcgcagcgtcccga	CRISPR spacer
ttcgaagacatgcagatcgcgcagcgcaccga	Protospacer
* **  * .*****************. ****

9. spacer 3.12|1790604|32|NZ_CP015912|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP034813 (Paracoccus sp. Arc7-R13 plasmid unnamed2, complete sequence) position: , mismatch: 7, identity: 0.781

tgcgt-tgctatgcagatcgcgcagcgtcccga	CRISPR spacer
-gcgcaggctatgcagatagcgcaccgtccaca	Protospacer
 ***.  *********** ***** *****  *

10. spacer 2.1|1763961|32|NZ_CP015912|CRT matches to NZ_AP014705 (Methylobacterium aquaticum strain MA-22A plasmid pMaq22A_1p, complete sequence) position: , mismatch: 8, identity: 0.75

taagtg---atatccatcatcgcatccagtgcgcc	CRISPR spacer
---gtgcgcccctccatcaccgcttccagtgcgcc	Protospacer
   ***    . *******.*** ***********

11. spacer 2.3|1764083|32|NZ_CP015912|CRT,PILER-CR,CRISPRCasFinder matches to MT889371 (Microbacterium phage DelaGarza, complete genome) position: , mismatch: 8, identity: 0.75

acgcgcgtaccggatcgcggacaacaaattgc	CRISPR spacer
gcgcgcctaccggatcgcggacaaccgcacgg	Protospacer
.***** ****************** .  .* 

12. spacer 3.1|1789933|32|NZ_CP015912|CRISPRCasFinder,CRT matches to NZ_CP014600 (Yangia sp. CCB-MM3 plasmid unnamed4, complete sequence) position: , mismatch: 8, identity: 0.75

aacatcggaaacggcttcgcggcggcggcgtc	CRISPR spacer
ggctgtggaaagggctgcgcggcggcggcgac	Protospacer
..*  .***** **** ************* *

13. spacer 3.3|1790055|32|NZ_CP015912|CRISPRCasFinder,CRT matches to NZ_CP029830 (Azospirillum ramasamyi strain M2T2B2 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.75

gcccgcctcgtcggtgtattccgcgagatcgc	CRISPR spacer
cgtcgcctcgtcggcgtattccgccagcaggc	Protospacer
  .***********.********* **   **

14. spacer 3.5|1790177|32|NZ_CP015912|CRISPRCasFinder,CRT matches to NZ_CP016891 (Pantoea agglomerans strain C410P1 plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.75

gtcgccgggttgattttccatgatgattttta	CRISPR spacer
gtaaagagtttgattttccatgataattctta	Protospacer
** .  .* ***************.***.***

15. spacer 3.6|1790238|32|NZ_CP015912|CRISPRCasFinder,CRT,PILER-CR matches to CP000876 (Herpetosiphon aurantiacus DSM 785 plasmid pHAU01, complete sequence) position: , mismatch: 8, identity: 0.75

atataaatcgcaaagctcggaaaatgttttaa	CRISPR spacer
atataaatcgaaaagcttggaaaggaattgca	Protospacer
********** ******.*****. . **  *

16. spacer 3.7|1790299|32|NZ_CP015912|CRISPRCasFinder,CRT,PILER-CR matches to NC_014825 (Ruminococcus albus 7 = DSM 20455 plasmid pRUMAL02, complete sequence) position: , mismatch: 8, identity: 0.75

cctctcttattttttcatcgtccatattcatg-	CRISPR spacer
cctctcttagtttttcaacgtcc-cctgcgtag	Protospacer
********* ******* ***** . * *.*. 

17. spacer 3.10|1790482|32|NZ_CP015912|CRISPRCasFinder,CRT,PILER-CR matches to MK416007 (Klebsiella phage ST405-OXA48phi1.2, complete genome) position: , mismatch: 8, identity: 0.75

actgtcatctctctcccactgggagatagaaa	CRISPR spacer
ggtttcatccctttcccactgggagatcgtga	Protospacer
. * *****.**.************** * .*

18. spacer 3.12|1790604|32|NZ_CP015912|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP040764 (Paracoccus sp. 2251 plasmid unnamed3, complete sequence) position: , mismatch: 8, identity: 0.75

tgcgttgctatgcagatcgcgcagcgtcccga	CRISPR spacer
gccgctgcgatgcagatcgcgcagcgtggaca	Protospacer
  **.*** ******************    *

19. spacer 3.18|1790970|32|NZ_CP015912|CRISPRCasFinder,CRT,PILER-CR matches to MF773750 (Mycobacterium phage OKCentral2016, complete genome) position: , mismatch: 8, identity: 0.75

cgtccggatcggtttcgagaatctctacgctc	CRISPR spacer
cgccgagatcggcttcgaggatctctacgagg	Protospacer
**.* .******.******.*********   

20. spacer 3.18|1790970|32|NZ_CP015912|CRISPRCasFinder,CRT,PILER-CR matches to JX307704 (Mycobacterium virus Goose, complete genome) position: , mismatch: 8, identity: 0.75

cgtccggatcggtttcgagaatctctacgctc	CRISPR spacer
cgccgagatcggcttcgaggatctctacgagg	Protospacer
**.* .******.******.*********   

21. spacer 2.1|1763961|32|NZ_CP015912|CRT matches to NZ_CP017563 (Paraburkholderia sprentiae WSM5005 plasmid pl1WSM5005, complete sequence) position: , mismatch: 9, identity: 0.719

taagtgatatccatcatcgcatccagtgcgcc	CRISPR spacer
ctcatcgcatccatcatcggttccagtgcgcc	Protospacer
.  .* ..***********  ***********

22. spacer 2.3|1764083|32|NZ_CP015912|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP044425 (Paracoccus pantotrophus strain DSM 2944 plasmid pPAN2, complete sequence) position: , mismatch: 9, identity: 0.719

acgcgcgtaccggatcgcggacaacaaattgc------	CRISPR spacer
tcgcgcggaccggatcgcggccaa------gccccgcg	Protospacer
 ****** ************ ***      **      

23. spacer 3.1|1789933|32|NZ_CP015912|CRISPRCasFinder,CRT matches to NZ_CP009292 (Novosphingobium pentaromativorans US6-1 plasmid pLA3, complete sequence) position: , mismatch: 9, identity: 0.719

aacatcggaaacggcttcgcggcggcggcgtc	CRISPR spacer
cccgggaaaaacgggttcgcggcggcggcttc	Protospacer
  *.  ..****** ************** **

24. spacer 3.2|1789994|32|NZ_CP015912|CRISPRCasFinder,CRT matches to NZ_CP030074 (Streptomyces sp. ZFG47 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.719

ggcatagccaggctgatccggcgacggcctta	CRISPR spacer
gcagcagaccggctgatccggcgacggccccg	Protospacer
*  ..** * *******************...

25. spacer 3.3|1790055|32|NZ_CP015912|CRISPRCasFinder,CRT matches to NZ_CP006988 (Rhizobium sp. IE4771 plasmid pRetIE4771b, complete sequence) position: , mismatch: 9, identity: 0.719

gcccgcctcgtcggtgtattccgcgagatcgc	CRISPR spacer
taccgcctcgtcgatgtaatccgcgacgtgcg	Protospacer
  ***********.**** ******* .*   

26. spacer 3.7|1790299|32|NZ_CP015912|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP005987 (Acidithiobacillus caldus ATCC 51756 plasmid megap mpAca1.1, complete sequence) position: , mismatch: 9, identity: 0.719

cctctcttattttttcatcgtccatattcatg	CRISPR spacer
ttgcgattattttctcatcgtccttattcacc	Protospacer
.. *  *******.********* ******. 

27. spacer 3.7|1790299|32|NZ_CP015912|CRISPRCasFinder,CRT,PILER-CR matches to MN163281 (Klebsiella phage KpCHEMY26, complete genome) position: , mismatch: 9, identity: 0.719

-------cctctcttattttttcatcgtccatattcatg	CRISPR spacer
ggagaaacc-------ttttatcatcgtccagattcatg	Protospacer
       **       **** ********** *******

28. spacer 3.8|1790360|32|NZ_CP015912|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP010863 (Marinovum algicola DG 898 plasmid pMaD8, complete sequence) position: , mismatch: 9, identity: 0.719

ggccc---cggaacatctgccgcagtgcgataccc	CRISPR spacer
---ccaggcggaacatctgcggcagggcgatcatg	Protospacer
   **   ************ **** *****  . 

29. spacer 3.9|1790421|32|NZ_CP015912|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP036355 (Bacillus sp. SYJ plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.719

ggattgcaggcatcaggtgatatcgccaaaac	CRISPR spacer
attttatgggcatcaggtgctatcgccacaaa	Protospacer
.  **...*********** ******** ** 

30. spacer 3.9|1790421|32|NZ_CP015912|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP053290 (Bacillus cereus strain WPySW2 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

ggattgcaggcatcaggtgatatcgccaaaac	CRISPR spacer
attttatgggcatcaggtgctatcgccacaaa	Protospacer
.  **...*********** ******** ** 

31. spacer 3.9|1790421|32|NZ_CP015912|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP045534 (Bacillaceae bacterium C02 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.719

ggattgcaggcatcaggtgatatcgccaaaac	CRISPR spacer
attttatgggcatcaggtgctatcgccacaaa	Protospacer
.  **...*********** ******** ** 

32. spacer 3.11|1790543|32|NZ_CP015912|CRISPRCasFinder,CRT,PILER-CR matches to MN698241 (Pelagibacter phage HTVC027P, complete genome) position: , mismatch: 9, identity: 0.719

gaaactctctgagaatccgtcagcaaaaatac	CRISPR spacer
accactctctgataatccatcagcaatagctc	Protospacer
.  ********* *****.******* *.. *

33. spacer 3.14|1790726|32|NZ_CP015912|CRISPRCasFinder,CRT,PILER-CR matches to CP034667 (Proteus vulgaris strain PvSC3 plasmid pPvSC3, complete sequence) position: , mismatch: 9, identity: 0.719

atttgtcgccgtatgagttttacgcgccgtct	CRISPR spacer
gtaaaaaaccgtctgagtcttacgcgccgtct	Protospacer
.*  .  .**** *****.*************

34. spacer 3.14|1790726|32|NZ_CP015912|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013104 (Paraburkholderia caribensis strain MWAP64 plasmid 1, complete sequence) position: , mismatch: 9, identity: 0.719

atttgtcgccgtatgagttttacgcgccgtct	CRISPR spacer
gatggcgagcgtctgagttttgcgcgccgtct	Protospacer
. * *. . *** ********.**********

35. spacer 3.23|1790054|34|NZ_CP015912|PILER-CR matches to NZ_CP029830 (Azospirillum ramasamyi strain M2T2B2 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.735

acgcccgcctcgtcggtgtattccgcgagatcgc	CRISPR spacer
agcgtcgcctcgtcggcgtattccgccagcaggc	Protospacer
*   .***********.********* **   **

36. spacer 3.1|1789933|32|NZ_CP015912|CRISPRCasFinder,CRT matches to NZ_CP012383 (Streptomyces ambofaciens ATCC 23877 plasmid pSAM1, complete sequence) position: , mismatch: 10, identity: 0.688

aacatcggaaacggcttcgcggcggcggcgtc	CRISPR spacer
gaggacggaagcggcttcgccgcggcgggcaa	Protospacer
.* . *****.********* *******    

37. spacer 3.15|1790787|32|NZ_CP015912|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP043499 (Rhizobium grahamii strain BG7 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.688

ggcgtcccattcgatccgctggttttcgatga	CRISPR spacer
ggcgtcccattcgatcggctcgtagcgatcgc	Protospacer
**************** *** **  . . .* 

38. spacer 3.21|1789932|34|NZ_CP015912|PILER-CR matches to NZ_CP014600 (Yangia sp. CCB-MM3 plasmid unnamed4, complete sequence) position: , mismatch: 10, identity: 0.706

tcaacatcggaaacggcttcgcggcggcggcgtc	CRISPR spacer
ggggctgtggaaagggctgcgcggcggcggcgac	Protospacer
  ..*  .***** **** ************* *

39. spacer 3.23|1790054|34|NZ_CP015912|PILER-CR matches to NZ_CP006988 (Rhizobium sp. IE4771 plasmid pRetIE4771b, complete sequence) position: , mismatch: 10, identity: 0.706

acgcccgcctcgtcggtgtattccgcgagatcgc	CRISPR spacer
agtaccgcctcgtcgatgtaatccgcgacgtgcg	Protospacer
*   ***********.**** ******* .*   

40. spacer 3.21|1789932|34|NZ_CP015912|PILER-CR matches to NZ_CP009292 (Novosphingobium pentaromativorans US6-1 plasmid pLA3, complete sequence) position: , mismatch: 11, identity: 0.676

tcaacatcggaaacggcttcgcggcggcggcgtc	CRISPR spacer
ggcccgggaaaaacgggttcgcggcggcggcttc	Protospacer
    *.  ..****** ************** **

41. spacer 3.22|1789993|34|NZ_CP015912|PILER-CR matches to NZ_CP030074 (Streptomyces sp. ZFG47 plasmid unnamed1, complete sequence) position: , mismatch: 11, identity: 0.676

tcggcatagccaggctgatccggcgacggcctta	CRISPR spacer
gagcagcagaccggctgatccggcgacggccccg	Protospacer
  *  ..** * *******************...

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 897 : 9094 13 Escherichia_phage(44.44%) tail,integrase NA
DBSCAN-SWA_2 199533 : 261851 66 Escherichia_phage(36.73%) tail,tRNA,integrase,coat,lysis,transposase,terminase attL 193917:193933|attR 238724:238740
DBSCAN-SWA_3 455796 : 515672 71 Enterobacteria_phage(30.61%) tail,integrase,lysis,transposase,terminase attL 482231:482244|attR 517288:517301
DBSCAN-SWA_4 1087620 : 1097062 10 Enterobacteria_phage(85.71%) NA NA
DBSCAN-SWA_5 1300458 : 1346225 56 Enterobacteria_phage(86.36%) tail,tRNA,integrase,head,portal,plate,capsid,holin,terminase attL 1296620:1296643|attR 1342783:1342806
DBSCAN-SWA_6 1740496 : 1747636 6 Escherichia_phage(83.33%) NA NA
DBSCAN-SWA_7 3561732 : 3634488 77 Enterobacteria_phage(39.62%) tail,tRNA,integrase,portal,lysis,protease,terminase attL 3554275:3554290|attR 3578382:3578397
DBSCAN-SWA_8 3832843 : 3895169 51 Emiliania_huxleyi_virus(12.5%) plate,transposase,tRNA,protease NA
DBSCAN-SWA_9 4450096 : 4509310 80 Enterobacteria_phage(54.1%) tail,integrase,head,portal,lysis,capsid,transposase,terminase attL 4469220:4469235|attR 4483196:4483211
DBSCAN-SWA_10 4560722 : 4625708 75 Salmonella_phage(75.56%) tail,integrase,head,portal,plate,lysis,capsid,transposase,terminase attL 4578560:4578574|attR 4600161:4600175
DBSCAN-SWA_11 4831416 : 4881840 36 Acinetobacter_phage(11.11%) transposase,integrase attL 4833822:4833840|attR 4887656:4887674
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
2. NZ_CP015915
Click the left colored region to show detailed information
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 787 : 114242 114 Salmonella_phage(92.86%) integrase,terminase,transposase,capsid,tRNA,tail,portal attL 45402:45421|attR 55592:55611
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
3. NZ_CP015914
Click the left colored region to show detailed information
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 0 : 7639 5 Escherichia_phage(25.0%) transposase NA
DBSCAN-SWA_2 12091 : 12835 1 Xanthomonas_phage(100.0%) NA NA
DBSCAN-SWA_3 35496 : 35718 1 Vibrio_virus(100.0%) NA NA
DBSCAN-SWA_4 43662 : 98770 52 Escherichia_phage(36.0%) transposase,integrase attL 55433:55449|attR 88117:88133
DBSCAN-SWA_5 104643 : 120215 10 Salmonella_phage(28.57%) transposase,integrase attL 102676:102689|attR 115925:115938
DBSCAN-SWA_6 125523 : 128098 3 Enterobacteria_phage(66.67%) transposase NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage