Please click to download your results

Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP016328 Gluconobacter oxydans strain 1.637, complete genome 2 crisprs csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,DinG,DEDDh 0 8 5 0

Results visualization

1. NZ_CP016328
Click the left colored region to show detailed information
CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP016328_1 1779326-1779781 TypeI-E I-E
7 spacers
cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information
CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP016328_2 1853680-1854440 Orphan I-E
12 spacers
DEDDh

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP016328_2 2.1|1853709|32|NZ_CP016328|CRT 1853709-1853740 32 NZ_CP043044 Gluconobacter thailandicus strain HD924 plasmid unnamed1, complete sequence 96863-96894 2 0.938
NZ_CP016328_1 1.7|1779721|32|NZ_CP016328|CRISPRCasFinder,CRT,PILER-CR 1779721-1779752 32 NC_048047 Caulobacter phage CcrBL9, complete genome 207713-207744 7 0.781
NZ_CP016328_2 2.1|1853709|32|NZ_CP016328|CRT 1853709-1853740 32 NZ_CP025013 Rhizobium leguminosarum strain Norway plasmid pRLN1, complete sequence 324162-324193 7 0.781
NZ_CP016328_2 2.1|1853709|32|NZ_CP016328|CRT 1853709-1853740 32 NZ_CP018229 Rhizobium leguminosarum strain Vaf-108 plasmid unnamed1, complete sequence 638599-638630 7 0.781
NZ_CP016328_2 2.1|1853709|32|NZ_CP016328|CRT 1853709-1853740 32 NZ_CP054022 Rhizobium sp. JKLM12A2 plasmid pPR12A201, complete sequence 66833-66864 7 0.781
NZ_CP016328_2 2.1|1853709|32|NZ_CP016328|CRT 1853709-1853740 32 NZ_CP054032 Rhizobium sp. JKLM13E plasmid pPR13E01, complete sequence 1027262-1027293 7 0.781
NZ_CP016328_2 2.1|1853709|32|NZ_CP016328|CRT 1853709-1853740 32 NZ_CP022565 Rhizobium leguminosarum bv. viciae strain BIHB 1148 plasmid pSK01, complete sequence 381891-381922 7 0.781
NZ_CP016328_1 1.7|1779721|32|NZ_CP016328|CRISPRCasFinder,CRT,PILER-CR 1779721-1779752 32 MH588547 Caulobacter phage CcrSC, complete genome 207772-207803 8 0.75
NZ_CP016328_2 2.1|1853709|32|NZ_CP016328|CRT 1853709-1853740 32 NZ_CP006990 Rhizobium sp. IE4771 plasmid pRetIE4771d, complete sequence 13612-13643 8 0.75
NZ_CP016328_2 2.1|1853709|32|NZ_CP016328|CRT 1853709-1853740 32 NZ_CP021127 Rhizobium sp. Kim5 plasmid pRetKim5c, complete sequence 13440-13471 8 0.75
NZ_CP016328_2 2.1|1853709|32|NZ_CP016328|CRT 1853709-1853740 32 CP007644 Rhizobium etli bv. phaseoli str. IE4803 plasmid pRetIE4803c, complete sequence 13613-13644 8 0.75
NZ_CP016328_2 2.1|1853709|32|NZ_CP016328|CRT 1853709-1853740 32 NZ_CP050098 Rhizobium leguminosarum bv. trifolii strain 9B plasmid pRL9b4, complete sequence 281989-282020 8 0.75
NZ_CP016328_2 2.1|1853709|32|NZ_CP016328|CRT 1853709-1853740 32 NZ_CP053440 Rhizobium leguminosarum bv. trifolii strain CC275e plasmid pRltCC275eF, complete sequence 287519-287550 8 0.75
NZ_CP016328_2 2.1|1853709|32|NZ_CP016328|CRT 1853709-1853740 32 NZ_CP016287 Rhizobium leguminosarum strain Vaf10 plasmid unnamed1, complete sequence 250465-250496 8 0.75
NZ_CP016328_2 2.5|1853953|32|NZ_CP016328|CRT,CRISPRCasFinder 1853953-1853984 32 NZ_AP022593 Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence 1287421-1287452 8 0.75
NZ_CP016328_2 2.10|1854258|32|NZ_CP016328|CRT,CRISPRCasFinder 1854258-1854289 32 NC_021742 Serratia liquefaciens ATCC 27592 plasmid unnamed, complete sequence 36625-36656 8 0.75
NZ_CP016328_1 1.1|1779355|32|NZ_CP016328|CRISPRCasFinder,CRT 1779355-1779386 32 NZ_CP034186 Deinococcus sp. S14-83 strain S14-83T plasmid unnamed2, complete sequence 24631-24662 9 0.719
NZ_CP016328_2 2.2|1853770|32|NZ_CP016328|CRT,CRISPRCasFinder 1853770-1853801 32 NC_014308 Ralstonia solanacearum PSI07 plasmid pRSI13, complete genome 4242-4273 9 0.719
NZ_CP016328_2 2.13|1853770|33|NZ_CP016328|PILER-CR 1853770-1853802 33 NC_014308 Ralstonia solanacearum PSI07 plasmid pRSI13, complete genome 4242-4274 9 0.727
NZ_CP016328_2 2.16|1853953|33|NZ_CP016328|PILER-CR 1853953-1853985 33 NZ_AP022593 Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence 1287421-1287453 9 0.727

1. spacer 2.1|1853709|32|NZ_CP016328|CRT matches to NZ_CP043044 (Gluconobacter thailandicus strain HD924 plasmid unnamed1, complete sequence) position: , mismatch: 2, identity: 0.938

atgatgcgcgcgtgcttctgaaaaatgccgtc	CRISPR spacer
atgatgcgcgcgtgcttctggaaaacgccgtc	Protospacer
********************.****.******

2. spacer 1.7|1779721|32|NZ_CP016328|CRISPRCasFinder,CRT,PILER-CR matches to NC_048047 (Caulobacter phage CcrBL9, complete genome) position: , mismatch: 7, identity: 0.781

aagaggttgcgcaggttgctgccgtggaagtg	CRISPR spacer
agggcgttgcgcaggttgctggcgttgacttg	Protospacer
*.*. **************** *** **  **

3. spacer 2.1|1853709|32|NZ_CP016328|CRT matches to NZ_CP025013 (Rhizobium leguminosarum strain Norway plasmid pRLN1, complete sequence) position: , mismatch: 7, identity: 0.781

atgatgcgcgcgtgcttctgaaaaatgccgtc	CRISPR spacer
aagatgcgagcgtgcttctgaaaaagcgcgag	Protospacer
* ****** ****************   **  

4. spacer 2.1|1853709|32|NZ_CP016328|CRT matches to NZ_CP018229 (Rhizobium leguminosarum strain Vaf-108 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.781

atgatgcgcgcgtgcttctgaaaaatgccgtc	CRISPR spacer
aagatgcgagcgtgcttctgaaaaagcgcgag	Protospacer
* ****** ****************   **  

5. spacer 2.1|1853709|32|NZ_CP016328|CRT matches to NZ_CP054022 (Rhizobium sp. JKLM12A2 plasmid pPR12A201, complete sequence) position: , mismatch: 7, identity: 0.781

atgatgcgcgcgtgcttctgaaaaatgccgtc	CRISPR spacer
aggatgcgagcgtgcttctgaaaaagcgcgag	Protospacer
* ****** ****************   **  

6. spacer 2.1|1853709|32|NZ_CP016328|CRT matches to NZ_CP054032 (Rhizobium sp. JKLM13E plasmid pPR13E01, complete sequence) position: , mismatch: 7, identity: 0.781

atgatgcgcgcgtgcttctgaaaaatgccgtc	CRISPR spacer
aggatgcgagcgtgcttctgaaaaagcgcgag	Protospacer
* ****** ****************   **  

7. spacer 2.1|1853709|32|NZ_CP016328|CRT matches to NZ_CP022565 (Rhizobium leguminosarum bv. viciae strain BIHB 1148 plasmid pSK01, complete sequence) position: , mismatch: 7, identity: 0.781

atgatgcgcgcgtgcttctgaaaaatgccgtc	CRISPR spacer
aagatgcgagcgtgcttctgaaaaaacgcgag	Protospacer
* ****** ****************   **  

8. spacer 1.7|1779721|32|NZ_CP016328|CRISPRCasFinder,CRT,PILER-CR matches to MH588547 (Caulobacter phage CcrSC, complete genome) position: , mismatch: 8, identity: 0.75

aagaggttgcgcaggttgctgccgtggaagtg	CRISPR spacer
agggcgttgcgcaggttgctggcgttgacttc	Protospacer
*.*. **************** *** **  * 

9. spacer 2.1|1853709|32|NZ_CP016328|CRT matches to NZ_CP006990 (Rhizobium sp. IE4771 plasmid pRetIE4771d, complete sequence) position: , mismatch: 8, identity: 0.75

atgatgcgcgcgtgcttctgaaaaatgccgtc	CRISPR spacer
cggatgcgagcgtgcttctgaaaaagcgcgag	Protospacer
  ****** ****************   **  

10. spacer 2.1|1853709|32|NZ_CP016328|CRT matches to NZ_CP021127 (Rhizobium sp. Kim5 plasmid pRetKim5c, complete sequence) position: , mismatch: 8, identity: 0.75

atgatgcgcgcgtgcttctgaaaaatgccgtc	CRISPR spacer
cggatgcgagcgtgcttctgaaaaagcgcgag	Protospacer
  ****** ****************   **  

11. spacer 2.1|1853709|32|NZ_CP016328|CRT matches to CP007644 (Rhizobium etli bv. phaseoli str. IE4803 plasmid pRetIE4803c, complete sequence) position: , mismatch: 8, identity: 0.75

atgatgcgcgcgtgcttctgaaaaatgccgtc	CRISPR spacer
cggatgcgagcgtgcttctgaaaaagcgcgag	Protospacer
  ****** ****************   **  

12. spacer 2.1|1853709|32|NZ_CP016328|CRT matches to NZ_CP050098 (Rhizobium leguminosarum bv. trifolii strain 9B plasmid pRL9b4, complete sequence) position: , mismatch: 8, identity: 0.75

atgatgcgcgcgtgcttctgaaaaatgccgtc	CRISPR spacer
aagatgcgagcgtccttctgaaaaaacgcgag	Protospacer
* ****** **** ***********   **  

13. spacer 2.1|1853709|32|NZ_CP016328|CRT matches to NZ_CP053440 (Rhizobium leguminosarum bv. trifolii strain CC275e plasmid pRltCC275eF, complete sequence) position: , mismatch: 8, identity: 0.75

atgatgcgcgcgtgcttctgaaaaatgccgtc	CRISPR spacer
aagatgcgagcgtccttctgaaaaaacgcgag	Protospacer
* ****** **** ***********   **  

14. spacer 2.1|1853709|32|NZ_CP016328|CRT matches to NZ_CP016287 (Rhizobium leguminosarum strain Vaf10 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.75

atgatgcgcgcgtgcttctgaaaaatgccgtc	CRISPR spacer
aggatgcgagcgtccttctgaaaaaacgcgag	Protospacer
* ****** **** ***********   **  

15. spacer 2.5|1853953|32|NZ_CP016328|CRT,CRISPRCasFinder matches to NZ_AP022593 (Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence) position: , mismatch: 8, identity: 0.75

ttcacgggatttggtgacggccgcgcaaatgg	CRISPR spacer
tgcacgggatttagcgacggccgcgccgagct	Protospacer
* **********.*.*********** .*   

16. spacer 2.10|1854258|32|NZ_CP016328|CRT,CRISPRCasFinder matches to NC_021742 (Serratia liquefaciens ATCC 27592 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.75

ataagcaggttgggaatgtcgccggacaacga	CRISPR spacer
taacgcaggttgggaaaggcgccggacgccaa	Protospacer
  * ************ * ********. *.*

17. spacer 1.1|1779355|32|NZ_CP016328|CRISPRCasFinder,CRT matches to NZ_CP034186 (Deinococcus sp. S14-83 strain S14-83T plasmid unnamed2, complete sequence) position: , mismatch: 9, identity: 0.719

atccaggacgtggtgaacacgttcgggccgcc	CRISPR spacer
cgactggacgtggtgaacaagttcgtgcagtt	Protospacer
   * ************** ***** ** *..

18. spacer 2.2|1853770|32|NZ_CP016328|CRT,CRISPRCasFinder matches to NC_014308 (Ralstonia solanacearum PSI07 plasmid pRSI13, complete genome) position: , mismatch: 9, identity: 0.719

attgctctgaccggctacacggctgccggcgt	CRISPR spacer
gacaacctggccggctacacgcctgccggcga	Protospacer
. .. .***.*********** ********* 

19. spacer 2.13|1853770|33|NZ_CP016328|PILER-CR matches to NC_014308 (Ralstonia solanacearum PSI07 plasmid pRSI13, complete genome) position: , mismatch: 9, identity: 0.727

attgctctgaccggctacacggctgccggcgtc	CRISPR spacer
gacaacctggccggctacacgcctgccggcgac	Protospacer
. .. .***.*********** ********* *

20. spacer 2.16|1853953|33|NZ_CP016328|PILER-CR matches to NZ_AP022593 (Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence) position: , mismatch: 9, identity: 0.727

ttcacgggatttggtgacggccgcgcaaatggc	CRISPR spacer
tgcacgggatttagcgacggccgcgccgagctg	Protospacer
* **********.*.*********** .*    

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 570163 : 582039 10 uncultured_Mediterranean_phage(50.0%) NA NA
DBSCAN-SWA_2 1148884 : 1197280 40 Streptomyces_phage(16.67%) tRNA,transposase NA
DBSCAN-SWA_3 2193586 : 2275693 55 Planktothrix_phage(28.57%) transposase NA
DBSCAN-SWA_4 2781893 : 2790680 9 Pseudomonas_phage(33.33%) NA NA
DBSCAN-SWA_5 3197044 : 3248754 49 uncultured_Caudovirales_phage(66.67%) tRNA,transposase NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage