CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number
NZ_CP003562	Flammeovirga sp. MY04 plasmid unnamed, complete sequence	1 crisprs	DEDDh,cas6,cas5,cas3,cas8b6,cas7,cas4,cas1,cas2	0	36	0
NZ_CP003560	Flammeovirga sp. MY04 chromosome 1, complete sequence	3 crisprs	cas3,PD-DExK,DEDDh,WYL,csa3	1	1	2
NZ_CP003561	Flammeovirga sp. MY04 chromosome 2, complete sequence	0 crisprs	PD-DExK,DEDDh,cas3	0	0	1

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP003562_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP003562_1

74674-77069

Unclear

Consensus_repeat	Method
GTTTTACACTGAACTATATTGAATTGAAAT	PILER-CR
GTTTTACACTGAACTATATTGAATTGAAAT	CRISPRCasFinder
GTTTTACACTGAACTATATTGAATTGAAAT	CRT

36 spacers

cas2,cas1,cas4,cas7,cas8b6,cas3,cas5,cas6

The CRISPR arrays of NZ_CP003562_1

>merge|NZ_CP003562|1|74674-77069|PILER-CR,CRISPRCasFinder,CRT
GTTTTACACTGAACTATATTGAATTGAAATAGATTAATTAGTGAGCTAAATTCTAAAGGACACAATAGTTTTACACTGAACTATATTGAATTGAAATGCGAAAAGATAAATCTAAATTTTCTTTCGGGGCAGCGTTTTACACTGAACTATATTGAATTGAAATTTTGCAGGCGATACAGCTATTAGAAGTAGTGGCGGGTTTTACACTGAACTATATTGAATTGAAATACAAAAGCAACTCTTAATTTATCGCTGTTTTGTTCGTTTTACACTGAACTATATTGAATTGAAATATGATTAGAAGGCGATTCTTCACGATTGTAAAACAGTTTTACACTGAACTATATTGAATTGAAATAAAAGAAAAACAAAAGATAGAAAGTACATTTATCTTGTTTTACACTGAACTATATTGAATTGAAATTCACTATACGTTTCACTCGTTGGGTCTGCTCTTTCAGTTTTACACTGAACTATATTGAATTGAAATAGGTAAGCTCAGTTAAAGTAATATTGGTTTCGTTATTGTTTTACACTGAACTATATTGAATTGAAATCCAACGGAGCCTTTGAAGTTTCATTGCAAGAATAATGTTTTACACTGAACTATATTGAATTGAAATATAAGTTCGTCATCTTCATCGTGATAGCAGCGACAAGTTTTACACTGAACTATATTGAATTGAAATATCATCATACGGGCAAAATAATTGATTGACACACGGTTTTACACTGAACTATATTGAATTGAAATGAAGGTACTTATTTAGTAACTTATACGGCCCCTGGTTTTACACTGAACTATATTGAATTGAAATTTGGATAATAAAGGAGGTCGTTTAGCTATACTTCATGTTTTACACTGAACTATATTGAATTGAAATCACACAAGCACTCCCCCGAATCGCCCCGATACAGAGTTTTACACTGAACTATATTGAATTGAAATTTGACGACGTGACGCAGGAGTGGACAACAAAGCAACTGTTTTACACTGAACTATATTGAATTGAAATAGTACCAGGTTCTCTTCTTAAGGTTTACGTTAAGAGTTTTACACTGAACTATATTGAATTGAAATCTTGATCTTTCACAGAAGAGGTGTAGACAGATGATAGTTTTACACTGAACTATATTGAATTGAAATAATACTGCTGAAGTTCCTGAGCTTGGATTAAAAGTAAGTTTTACACTGAACTATATTGAATTGAAATTTCTCGCGAAATAATAACTAGGGGAGTTAAACTAGTTTTACACTGAACTATATTGAATTGAAATAATGAAATACTGGGTATAATTGTTTGCATGTTAAGTTTTACACTGAACTATATTGAATTGAAATGTAACAGTACGGCCAAGATCATCAACGCCTGTTAATGTTTTACACTGAACTATATTGAATTGAAATAGAGTCATAGACACCCAGCAGGACATTGACGACTGGAGTTTTACACTGAACTATATTGAATTGAAATAGCAATCCCTCTAACGTAGCATCCCCTTCTAAATGTTTTACACTGAACTATATTGAATTGAAATATAAGTTCGTCATCTTCATCGTGATAGCAGCGACAAGTTTTACACTGAACTATATTGAATTGAAATACTGCAGGGTTTTGGATTCATAGTGGAGGCATATCAGTTTTACACTGAACTATATTGAATTGAAATTTTCTCTAGAGGAACGACTGCTTCTGTGCCTGCTTCGTTTTACACTGAACTATATTGAATTGAAATACTGTATATGAGTTACGCCATCATAATTTCGACATGTGTTTTACACTGAACTATATTGAATTGAAATTTGATTAAGATAAGTTGTTAACTCTTCCATAAATGGAGTTTTACACTGAACTATATTGAATTGAAATATGGAAATGATGGAAGATTCAGAAGGGTTATTAATGTTTTACACTGAACTATATTGAATTGAAATATCATTTTCTTTCTTTAATATTCTTCCCGCTAAATCGTTTTACACTGAACTATATTGAATTGAAATAAACAAGGTGATATGATTGCAAGATCATCAACTGATAGTTTTACACTGAACTATATTGAATTGAAATTGTTGTTTTTACATGGGTTTGATGCTACACGTTTTCGTTTTACACTGAACTATATTGAATTGAAATATACCTTTCAATCGATCAGGATCAACAACCCCGCTTTGTTTTACACTGAACTATATTGAATTGAAATTTCTTTCTTCTTTTAAAATTGGTTCAGCCACCGTTTTACACTGAACTATATTGAATTGAAATATGATATTGTCTGGCTGTGCTTCGCCTTCCCAATTGGTTTTACACTAAACTATATTGAATTGAAATGATGATGAGGTTATTGGTGATATGTCTGAATATCTTGTTTTACACTGAACTATATTGAAATTTAGA

>NZ_CP003562|1|1|74674-77003|PILER-CR
GTTTTACACTGAACTATATTGAATTGAAAT	AGATTAATTAGTGAGCTAAATTCTAAAGGACACAATA
GTTTTACACTGAACTATATTGAATTGAAAT	GCGAAAAGATAAATCTAAATTTTCTTTCGGGGCAGC
GTTTTACACTGAACTATATTGAATTGAAAT	TTTGCAGGCGATACAGCTATTAGAAGTAGTGGCGG
GTTTTACACTGAACTATATTGAATTGAAAT	ACAAAAGCAACTCTTAATTTATCGCTGTTTTGTTC
GTTTTACACTGAACTATATTGAATTGAAAT	ATGATTAGAAGGCGATTCTTCACGATTGTAAAACA
GTTTTACACTGAACTATATTGAATTGAAAT	AAAAGAAAAACAAAAGATAGAAAGTACATTTATCTT
GTTTTACACTGAACTATATTGAATTGAAAT	TCACTATACGTTTCACTCGTTGGGTCTGCTCTTTCA
GTTTTACACTGAACTATATTGAATTGAAAT	AGGTAAGCTCAGTTAAAGTAATATTGGTTTCGTTATT
GTTTTACACTGAACTATATTGAATTGAAAT	CCAACGGAGCCTTTGAAGTTTCATTGCAAGAATAAT
GTTTTACACTGAACTATATTGAATTGAAAT	ATAAGTTCGTCATCTTCATCGTGATAGCAGCGACAA
GTTTTACACTGAACTATATTGAATTGAAAT	ATCATCATACGGGCAAAATAATTGATTGACACACG
GTTTTACACTGAACTATATTGAATTGAAAT	GAAGGTACTTATTTAGTAACTTATACGGCCCCTG
GTTTTACACTGAACTATATTGAATTGAAAT	TTGGATAATAAAGGAGGTCGTTTAGCTATACTTCAT
GTTTTACACTGAACTATATTGAATTGAAAT	CACACAAGCACTCCCCCGAATCGCCCCGATACAGA
GTTTTACACTGAACTATATTGAATTGAAAT	TTGACGACGTGACGCAGGAGTGGACAACAAAGCAACT
GTTTTACACTGAACTATATTGAATTGAAAT	AGTACCAGGTTCTCTTCTTAAGGTTTACGTTAAGA
GTTTTACACTGAACTATATTGAATTGAAAT	CTTGATCTTTCACAGAAGAGGTGTAGACAGATGATA
GTTTTACACTGAACTATATTGAATTGAAAT	AATACTGCTGAAGTTCCTGAGCTTGGATTAAAAGTAA
GTTTTACACTGAACTATATTGAATTGAAAT	TTCTCGCGAAATAATAACTAGGGGAGTTAAACTA
GTTTTACACTGAACTATATTGAATTGAAAT	AATGAAATACTGGGTATAATTGTTTGCATGTTAA
GTTTTACACTGAACTATATTGAATTGAAAT	GTAACAGTACGGCCAAGATCATCAACGCCTGTTAAT
GTTTTACACTGAACTATATTGAATTGAAAT	AGAGTCATAGACACCCAGCAGGACATTGACGACTGGA
GTTTTACACTGAACTATATTGAATTGAAAT	AGCAATCCCTCTAACGTAGCATCCCCTTCTAAAT
GTTTTACACTGAACTATATTGAATTGAAAT	ATAAGTTCGTCATCTTCATCGTGATAGCAGCGACAA
GTTTTACACTGAACTATATTGAATTGAAAT	ACTGCAGGGTTTTGGATTCATAGTGGAGGCATATCA
GTTTTACACTGAACTATATTGAATTGAAAT	TTTCTCTAGAGGAACGACTGCTTCTGTGCCTGCTTC
GTTTTACACTGAACTATATTGAATTGAAAT	ACTGTATATGAGTTACGCCATCATAATTTCGACATGT
GTTTTACACTGAACTATATTGAATTGAAAT	TTGATTAAGATAAGTTGTTAACTCTTCCATAAATGGA
GTTTTACACTGAACTATATTGAATTGAAAT	ATGGAAATGATGGAAGATTCAGAAGGGTTATTAAT
GTTTTACACTGAACTATATTGAATTGAAAT	ATCATTTTCTTTCTTTAATATTCTTCCCGCTAAATC
GTTTTACACTGAACTATATTGAATTGAAAT	AAACAAGGTGATATGATTGCAAGATCATCAACTGATA
GTTTTACACTGAACTATATTGAATTGAAAT	TGTTGTTTTTACATGGGTTTGATGCTACACGTTTTC
GTTTTACACTGAACTATATTGAATTGAAAT	ATACCTTTCAATCGATCAGGATCAACAACCCCGCTTT
GTTTTACACTGAACTATATTGAATTGAAAT	TTCTTTCTTCTTTTAAAATTGGTTCAGCCACC
GTTTTACACTGAACTATATTGAATTGAAAT	ATGATATTGTCTGGCTGTGCTTCGCCTTCCCAATTG
GTTTTACACTAAACTATATTGAATTGAAAT

>NZ_CP003562|1|1|74674-77069|CRISPRCasFinder
GTTTTACACTGAACTATATTGAATTGAAAT	AGATTAATTAGTGAGCTAAATTCTAAAGGACACAATA
GTTTTACACTGAACTATATTGAATTGAAAT	GCGAAAAGATAAATCTAAATTTTCTTTCGGGGCAGC
GTTTTACACTGAACTATATTGAATTGAAAT	TTTGCAGGCGATACAGCTATTAGAAGTAGTGGCGG
GTTTTACACTGAACTATATTGAATTGAAAT	ACAAAAGCAACTCTTAATTTATCGCTGTTTTGTTC
GTTTTACACTGAACTATATTGAATTGAAAT	ATGATTAGAAGGCGATTCTTCACGATTGTAAAACA
GTTTTACACTGAACTATATTGAATTGAAAT	AAAAGAAAAACAAAAGATAGAAAGTACATTTATCTT
GTTTTACACTGAACTATATTGAATTGAAAT	TCACTATACGTTTCACTCGTTGGGTCTGCTCTTTCA
GTTTTACACTGAACTATATTGAATTGAAAT	AGGTAAGCTCAGTTAAAGTAATATTGGTTTCGTTATT
GTTTTACACTGAACTATATTGAATTGAAAT	CCAACGGAGCCTTTGAAGTTTCATTGCAAGAATAAT
GTTTTACACTGAACTATATTGAATTGAAAT	ATAAGTTCGTCATCTTCATCGTGATAGCAGCGACAA
GTTTTACACTGAACTATATTGAATTGAAAT	ATCATCATACGGGCAAAATAATTGATTGACACACG
GTTTTACACTGAACTATATTGAATTGAAAT	GAAGGTACTTATTTAGTAACTTATACGGCCCCTG
GTTTTACACTGAACTATATTGAATTGAAAT	TTGGATAATAAAGGAGGTCGTTTAGCTATACTTCAT
GTTTTACACTGAACTATATTGAATTGAAAT	CACACAAGCACTCCCCCGAATCGCCCCGATACAGA
GTTTTACACTGAACTATATTGAATTGAAAT	TTGACGACGTGACGCAGGAGTGGACAACAAAGCAACT
GTTTTACACTGAACTATATTGAATTGAAAT	AGTACCAGGTTCTCTTCTTAAGGTTTACGTTAAGA
GTTTTACACTGAACTATATTGAATTGAAAT	CTTGATCTTTCACAGAAGAGGTGTAGACAGATGATA
GTTTTACACTGAACTATATTGAATTGAAAT	AATACTGCTGAAGTTCCTGAGCTTGGATTAAAAGTAA
GTTTTACACTGAACTATATTGAATTGAAAT	TTCTCGCGAAATAATAACTAGGGGAGTTAAACTA
GTTTTACACTGAACTATATTGAATTGAAAT	AATGAAATACTGGGTATAATTGTTTGCATGTTAA
GTTTTACACTGAACTATATTGAATTGAAAT	GTAACAGTACGGCCAAGATCATCAACGCCTGTTAAT
GTTTTACACTGAACTATATTGAATTGAAAT	AGAGTCATAGACACCCAGCAGGACATTGACGACTGGA
GTTTTACACTGAACTATATTGAATTGAAAT	AGCAATCCCTCTAACGTAGCATCCCCTTCTAAAT
GTTTTACACTGAACTATATTGAATTGAAAT	ATAAGTTCGTCATCTTCATCGTGATAGCAGCGACAA
GTTTTACACTGAACTATATTGAATTGAAAT	ACTGCAGGGTTTTGGATTCATAGTGGAGGCATATCA
GTTTTACACTGAACTATATTGAATTGAAAT	TTTCTCTAGAGGAACGACTGCTTCTGTGCCTGCTTC
GTTTTACACTGAACTATATTGAATTGAAAT	ACTGTATATGAGTTACGCCATCATAATTTCGACATGT
GTTTTACACTGAACTATATTGAATTGAAAT	TTGATTAAGATAAGTTGTTAACTCTTCCATAAATGGA
GTTTTACACTGAACTATATTGAATTGAAAT	ATGGAAATGATGGAAGATTCAGAAGGGTTATTAAT
GTTTTACACTGAACTATATTGAATTGAAAT	ATCATTTTCTTTCTTTAATATTCTTCCCGCTAAATC
GTTTTACACTGAACTATATTGAATTGAAAT	AAACAAGGTGATATGATTGCAAGATCATCAACTGATA
GTTTTACACTGAACTATATTGAATTGAAAT	TGTTGTTTTTACATGGGTTTGATGCTACACGTTTTC
GTTTTACACTGAACTATATTGAATTGAAAT	ATACCTTTCAATCGATCAGGATCAACAACCCCGCTTT
GTTTTACACTGAACTATATTGAATTGAAAT	TTCTTTCTTCTTTTAAAATTGGTTCAGCCACC
GTTTTACACTGAACTATATTGAATTGAAAT	ATGATATTGTCTGGCTGTGCTTCGCCTTCCCAATTG
GTTTTACACTAAACTATATTGAATTGAAAT	GATGATGAGGTTATTGGTGATATGTCTGAATATCTT
GTTTTACACTGAACTATATTGAAATTTAGA

>NZ_CP003562|1|1|74674-77069|CRT
GTTTTACACTGAACTATATTGAATTGAAAT	AGATTAATTAGTGAGCTAAATTCTAAAGGACACAATA
GTTTTACACTGAACTATATTGAATTGAAAT	GCGAAAAGATAAATCTAAATTTTCTTTCGGGGCAGC
GTTTTACACTGAACTATATTGAATTGAAAT	TTTGCAGGCGATACAGCTATTAGAAGTAGTGGCGG
GTTTTACACTGAACTATATTGAATTGAAAT	ACAAAAGCAACTCTTAATTTATCGCTGTTTTGTTC
GTTTTACACTGAACTATATTGAATTGAAAT	ATGATTAGAAGGCGATTCTTCACGATTGTAAAACA
GTTTTACACTGAACTATATTGAATTGAAAT	AAAAGAAAAACAAAAGATAGAAAGTACATTTATCTT
GTTTTACACTGAACTATATTGAATTGAAAT	TCACTATACGTTTCACTCGTTGGGTCTGCTCTTTCA
GTTTTACACTGAACTATATTGAATTGAAAT	AGGTAAGCTCAGTTAAAGTAATATTGGTTTCGTTATT
GTTTTACACTGAACTATATTGAATTGAAAT	CCAACGGAGCCTTTGAAGTTTCATTGCAAGAATAAT
GTTTTACACTGAACTATATTGAATTGAAAT	ATAAGTTCGTCATCTTCATCGTGATAGCAGCGACAA
GTTTTACACTGAACTATATTGAATTGAAAT	ATCATCATACGGGCAAAATAATTGATTGACACACG
GTTTTACACTGAACTATATTGAATTGAAAT	GAAGGTACTTATTTAGTAACTTATACGGCCCCTG
GTTTTACACTGAACTATATTGAATTGAAAT	TTGGATAATAAAGGAGGTCGTTTAGCTATACTTCAT
GTTTTACACTGAACTATATTGAATTGAAAT	CACACAAGCACTCCCCCGAATCGCCCCGATACAGA
GTTTTACACTGAACTATATTGAATTGAAAT	TTGACGACGTGACGCAGGAGTGGACAACAAAGCAACT
GTTTTACACTGAACTATATTGAATTGAAAT	AGTACCAGGTTCTCTTCTTAAGGTTTACGTTAAGA
GTTTTACACTGAACTATATTGAATTGAAAT	CTTGATCTTTCACAGAAGAGGTGTAGACAGATGATA
GTTTTACACTGAACTATATTGAATTGAAAT	AATACTGCTGAAGTTCCTGAGCTTGGATTAAAAGTAA
GTTTTACACTGAACTATATTGAATTGAAAT	TTCTCGCGAAATAATAACTAGGGGAGTTAAACTA
GTTTTACACTGAACTATATTGAATTGAAAT	AATGAAATACTGGGTATAATTGTTTGCATGTTAA
GTTTTACACTGAACTATATTGAATTGAAAT	GTAACAGTACGGCCAAGATCATCAACGCCTGTTAAT
GTTTTACACTGAACTATATTGAATTGAAAT	AGAGTCATAGACACCCAGCAGGACATTGACGACTGGA
GTTTTACACTGAACTATATTGAATTGAAAT	AGCAATCCCTCTAACGTAGCATCCCCTTCTAAAT
GTTTTACACTGAACTATATTGAATTGAAAT	ATAAGTTCGTCATCTTCATCGTGATAGCAGCGACAA
GTTTTACACTGAACTATATTGAATTGAAAT	ACTGCAGGGTTTTGGATTCATAGTGGAGGCATATCA
GTTTTACACTGAACTATATTGAATTGAAAT	TTTCTCTAGAGGAACGACTGCTTCTGTGCCTGCTTC
GTTTTACACTGAACTATATTGAATTGAAAT	ACTGTATATGAGTTACGCCATCATAATTTCGACATGT
GTTTTACACTGAACTATATTGAATTGAAAT	TTGATTAAGATAAGTTGTTAACTCTTCCATAAATGGA
GTTTTACACTGAACTATATTGAATTGAAAT	ATGGAAATGATGGAAGATTCAGAAGGGTTATTAAT
GTTTTACACTGAACTATATTGAATTGAAAT	ATCATTTTCTTTCTTTAATATTCTTCCCGCTAAATC
GTTTTACACTGAACTATATTGAATTGAAAT	AAACAAGGTGATATGATTGCAAGATCATCAACTGATA
GTTTTACACTGAACTATATTGAATTGAAAT	TGTTGTTTTTACATGGGTTTGATGCTACACGTTTTC
GTTTTACACTGAACTATATTGAATTGAAAT	ATACCTTTCAATCGATCAGGATCAACAACCCCGCTTT
GTTTTACACTGAACTATATTGAATTGAAAT	TTCTTTCTTCTTTTAAAATTGGTTCAGCCACC
GTTTTACACTGAACTATATTGAATTGAAAT	ATGATATTGTCTGGCTGTGCTTCGCCTTCCCAATTG
GTTTTACACTAAACTATATTGAATTGAAAT	GATGATGAGGTTATTGGTGATATGTCTGAATATCTT
GTTTTACACTGAACTATATTGAAATTTAGA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP003562.2\|WP_066217047.1\|73170_74175_+\|type-I-B-CRISPR-associated-endonuclease-Cas1	cas1	cd09722_cas1_CAS-I-B	gnl\|CDD\|274695
NZ_CP003562.2\|WP_066217028.1\|67016_67670_+\|CRISPR-associated-endoribonuclease-Cas6	cas6	cd09652_cas6_CAS-I:CAS-III	gnl\|CDD\|187783
NZ_CP003562.2\|WP_066217036.1\|68180_70319_+\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|224124
NZ_CP003562.2\|WP_169055558.1\|80755_82183_-\|IS66-family-transposase	unknown	unknown	gnl\|CDD\|376980
NZ_CP003562.2\|WP_066217056.1\|78032_78464_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP003562.2\|WP_066217071.1\|74204_74465_+\|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187856
NZ_CP003562.2\|WP_158297973.1\|79163_79898_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379276
NZ_CP003562.2\|WP_066217039.1\|70284_71547_+\|hypothetical-protein	cas8b6	mkCas0111_cas8b6_CAS-I-B	unknown
NZ_CP003562.2\|WP_066217032.1\|67672_68197_+\|hypothetical-protein	cas5	mkCas0069_cas5_CAS-I-B	unknown
NZ_CP003562.2\|WP_066207001.1\|82548_82836_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP003562.2\|WP_066207775.1\|82207_82549_-\|IS66-family-insertion-sequence-element-accessory-protein-TnpB	unknown	unknown	gnl\|CDD\|377551
NZ_CP003562.2\|WP_066217044.1\|72659_73163_+\|CRISPR-associated-protein-Cas4	cas4	pfam01930_cas4_CAS-I	gnl\|CDD\|366863
NZ_CP003562.2\|WP_066217022.1\|65017_65353_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP003562.2\|WP_066217067.1\|71572_72601_+\|hypothetical-protein	cas7	mkCas0088_cas7_CAS-I-B	gnl\|CDD\|273846
NZ_CP003562.2\|WP_066217051.1\|77532_77790_+\|DDE-type-integrase/transposase/recombinase	unknown	unknown	gnl\|CDD\|366234
NZ_CP003562.2\|WP_066217024.1\|65584_66655_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP003562.2\|WP_066217047.1\|73170_74175_+\|type-I-B-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274695	TIGR03641, cas1_HMARI, CRISPR-associated endonuclease Cas1, subtype I-B/HMARI/TNEAP. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes Cas1 subgroup that includes Cas1 proteins of the related HMARI and TNEAP subtypes of CRISPR/Cas system.	5.4282e-155
NZ_CP003562.2\|WP_066217028.1\|67016_67670_+\|CRISPR-associated-endoribonuclease-Cas6	gnl\|CDD\|187783	cd09652, Cas6-I-III, CRISPR/Cas system-associated RAMP superfamily protein Cas6. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas6 is an endoribonuclease that generates crRNAs, predicted subunit of Cascade complex; RAMP superfamily protein; Possesses double RRM/ferredoxin fold.	3.25335e-12
NZ_CP003562.2\|WP_066217036.1\|68180_70319_+\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	6.69184e-54
NZ_CP003562.2\|WP_066217051.1\|77532_77790_+\|DDE-type-integrase/transposase/recombinase	gnl\|CDD\|366234	pfam00665, rve, Integrase core domain. Integrase mediates integration of a DNA copy of the viral genome into the host chromosome. Integrase is composed of three domains. The amino-terminal domain is a zinc binding domain pfam02022. This domain is the central catalytic domain. The carboxyl terminal domain that is a non-specific DNA binding domain pfam00552. The catalytic domain acts as an endonuclease when two nucleotides are removed from the 3' ends of the blunt-ended viral DNA made by reverse transcription. This domain also catalyzes the DNA strand transfer reaction of the 3' ends of the viral DNA to the 5' ends of the integration site.	3.24997e-07
NZ_CP003562.2\|WP_066207775.1\|82207_82549_-\|IS66-family-insertion-sequence-element-accessory-protein-TnpB	gnl\|CDD\|377551	pfam05717, TnpB_IS66, IS66 Orf2 like protein. This protein is found in insertion sequences related to IS66. The function of these proteins is uncertain, but they are probably essential for transposition.	7.13771e-39
NZ_CP003562.2\|WP_066217044.1\|72659_73163_+\|CRISPR-associated-protein-Cas4	gnl\|CDD\|366863	pfam01930, Cas_Cas4, Domain of unknown function DUF83. This domain has no known function. The domain contains three conserved cysteines at its C-terminus.	1.21392e-46
NZ_CP003562.2\|WP_169055558.1\|80755_82183_-\|IS66-family-transposase	gnl\|CDD\|376980	pfam03050, DDE_Tnp_IS66, Transposase IS66 family. Transposase proteins are necessary for efficient DNA transposition. This family includes IS66 from Agrobacterium tumefaciens.	1.95965e-90
NZ_CP003562.2\|WP_066217067.1\|71572_72601_+\|hypothetical-protein	gnl\|CDD\|273846	TIGR01875, CRISPR-associated_protein_Cas7/Cst2/DevR, CRISPR-associated autoregulator DevR family. CRISPR is a term for Clustered Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR associated) proteins. This model represents one such family, represented by MJ0381 of Methanococcus jannaschii. This family includes the DevR protein of Myxococcus xanthus, a protein whose expression appears to regulated through a number of means, including both location and autorepression; DevR mutants are incapable of fruiting body development. [Regulatory functions, DNA interactions, , ].	5.91669e-07
NZ_CP003562.2\|WP_066217071.1\|74204_74465_+\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	6.11821e-28
NZ_CP003562.2\|WP_158297973.1\|79163_79898_-\|hypothetical-protein	gnl\|CDD\|379276	pfam13578, Methyltransf_24, Methyltransferase domain. This family appears to be a methyltransferase domain.	2.46787e-09

>NZ_CP003562.2|WP_066217071.1|74204_74465_+|CRISPR-associated-endonuclease-Cas2
MYIILVYDINTKRVGKMLRLCRKYLNWIQNSVFEGELTNSQLSSLKADANEIMQEGDSLIIFNNKSKKWLNKEIIGQEKSSIDNFL
>NZ_CP003562.2|WP_066217047.1|73170_74175_+|type-I-B-CRISPR-associated-endonuclease-Cas1
MKKSFYLFNPGRLSRKDNTLKFVPVDENENEGQTRYLPIEQVANLYVFGSLDANSALYNFLGKNGIGVHFFDYYEHYTGSFYPKEYLHAGQLHVQQSLHYSDPKKRITLAQEFINVGAFNMLKNLKYYQNRNKNTSEEILIIEELIKQIKHTTRVDELMGIEGNIRQVYYSAFNKIIPTFPFNGRERQPPTDPINALISFCNMICYTACIDMIYHTQLDPTISFLHEPGVRRYSLALDIAEIFKPILVDRLIFSLVNKKHIQVKHFKSEINACLLKESGRKIIMKAWDDKLTDTIKHRKIGRHVSYKHLIKLECYKLSKHLMSIEQYQGFKAWW
>NZ_CP003562.2|WP_066217044.1|72659_73163_+|CRISPR-associated-protein-Cas4
MTITPTIVSYLYICHRKLWLHAHHLRMESTSELVAEGKLIGKTTYPQRALKWQELDLGIAKIDFFDPKSNTIHEIKKSNKKSFAHNAQVKYYLYLLHKIGILEPTAIIEYPKLRITETVEWDKEEDQDLVESWINQADTIIQGACPDKLPISKCKKCSYFDFCWSGE
>NZ_CP003562.2|WP_066217067.1|71572_72601_+|hypothetical-protein
MNTLYISIAKKVDHTIFNVADGQKTYWDPTFNKRLPYSSGQQVKRCIIEEIANSGNFQLAPTTFESVVSKKKGKTEVSEGAVSTPCDPTYVDQLLGGWMNINKSSNIKRRSPLSISAMRPIHPLLAGVNETTGTFDRRDRNNNVVVFKEGDNILDEEAVDQLLEEFSSRSFTSKFLQEQRSATGIFIFDVAIDLNRLFSVKFSKIDSELTEEVKDKLLEQGWEQKDDQLILPKEKREMLIPHIVDGILNWRITSNQSRNFSMMEILAVATSTNVHEVSGAIRAELDQEEHAQLILSDDAFITESAAAYSNSFNASPTAINDAKSKIIELLSKHNPAQEKVTL
>NZ_CP003562.2|WP_066217039.1|70284_71547_+|hypothetical-protein
MITTDTGRILYNTQKKSLEDFFKECVHILFDDGVNNNLIYCINSPFSNAAFKNRSLADHIADYESKDFEVLDDAIAPGFPASDAKALKATSFGVSNILMRNGKEDSMLAFIGYSLEVGMAGGQNLYFSEPEILTIVFEGWKIYRQLLNDESTNLQPNKLASWNGQWLNYRLSNRYKGQTDFQTLDREGFFKPDKKGVMIEPIYWSELYFTLNKYYGKKLNKVTPSMGAIGQMKSTMGFLVLDFKYCRSLSKMYEHLTGKKLDSKEFRALFGLSSMRIVDTMRVSMRTLQPPSLEKMLEMQKAYKYDEKNYFQLKTYLLVMLGTQLEKAQKLIEETAKMLVEYRNSTKKTDRKNKVEKDLFGNNTKANYIDTLCEIIPDLEGDYKNLITEIQSVLLKLNKSDFKMFALLVKLEYAKLEKFN
>NZ_CP003562.2|WP_066217036.1|68180_70319_+|CRISPR-associated-helicase/endonuclease-Cas3
MKEQLNKLKAKSEDYKGHQLSLFEHTEDVYHSIIKFAQYLNVDVEICKKGAVLHDMGKAHPWFQEYLKGIRPERAYRHELGALFFLPLFPEEEWDILIELVVSHHKSIQNDPSNRGILDLLKEDEEFIDWHLEGWEIWSKETAPIWKAFGIEYRDISEDEAREAFDYVLDFCESIDFGVSTWKGILMGADHIASAMVDNTELSLERMFKTPDLRFYNTTHPLYPISEIPPSEKKHTLCVAPTGAGKTNFMMKRTKGRVFYTLPFQASINAMLHRIGKDLRADNPELDLRVQHSASKVVRRGTDFETELQGKVGASITILTPHQLAGLIFGLKGYEAQLLDVKGCDIILDEVHTYNRASQAIVLKLIEVLKDLGCRIHVGTATIPTKLYKEILKRLGEDTYEVSFDDETLSTYDRHTIHKVDDFESTLPVLQKAIQKKQKVLVICNRVANAQQMYTTLSELYPDVDTMLVHSKFKKGERNQKEQDLIDHYNTMEEACIVVSTQIVEVSLDISFDIMVTEVAPLDALIQRLGRVHRKRVASSLDAKTRIHKPIYVIAPPEDEKEALPYELEILDRTYEMLPNDAILHQTSMQEKIDYVYPEVDLMDIDTHCIFKNDQSINIEKLCSNTKSTFIELLEIDSVKVILESEVSQYERANYEEKMLMEIPASTYHVRNCAQLETGARPFVIPNRAYSELGLNTKMINDDNNRHGSNFI
>NZ_CP003562.2|WP_066217032.1|67672_68197_+|hypothetical-protein
MFAVKYKGDFGFIKPWDAVRNDKIASQQFLTPSMVTGMEIMLFGEANGAIKRHRIKFDILTPQQETVQGRGFFVKNKMNQKETGIATRYTMLNPELSLLFETKEEAEVAFNSHLFLARNEDIIFPIHIEEITEEEFDLQYEGFELVKGDTIVVGYNRYTGDKMTGNLEYFERTT
>NZ_CP003562.2|WP_066217028.1|67016_67670_+|CRISPR-associated-endoribonuclease-Cas6
MRLHLSCTTNTGKIPRYYKPKLKGTLHKWLGNYQSHDGKYSTYSISNIDGIKFNGDFGTAKKSGLKFFISSIDKEFIKKIILGIKKDNTMFSGITVEQVSIESDPVFDKKIEHFFVDSPVLVKRDNKYFFAGDKKADEYMTDLMNKKLKAAGYDDEVQIMFDPHYKKSSTTEVKYRDIRNICSICPVYIKGTPETIAFAWNVGIGNSTGIGLGAISK
>NZ_CP003562.2|WP_066217024.1|65584_66655_+|hypothetical-protein
MNTLISIESEIKTLLSTEERSWKKIGELMLIVKKEQLFKGSFKNFTAWVNHISFDTKVTSGYIWRIFKASRTFLGIIASDNPKDIHEAKTTPYQLETFSKIEKLAPDDVTYKYAQQIIDGTSNHTDIKLTWEALKSEHDQQFQLEDNEVKKALELKEENAVMLVGEEQSKMNAAEVYEAISIKQDWMKTLCEREFSFIKKMSTPPECHTYKEVTVRIPTEEKTRFGKLKPQRRRFDAIFTLKPYYSAYGDDLLTAGIEIKVSKSDLMGDDKYLDYLGWTNFFFFAVPSHLVEVAQQKIAESGYKELLGIIDAETSEVVQWPERQEPTAENSMKLYRELLFNRVEPKVVVENSYRIK
>NZ_CP003562.2|WP_066217022.1|65017_65353_-|hypothetical-protein
MNLFSKYNLEINSSKTVVTVDEDKQILSHFIDYWNNVDEIKEDLLPEIESVLNGLKDYNDIGGDVVSLAYVKKDNTSLEMSDLGFVDYILPTSDFKGLMLEWIEFLESQRS
>NZ_CP003562.2|WP_066217051.1|77532_77790_+|DDE-type-integrase/transposase/recombinase
MLHLYIEIYHIHQDALYKRFSESEIKEMQQSSEEDRLQFLHDNGPEYIENKLVKSLNEWGVQNCNTPTYSPQSNGMCESFIYWDI
>NZ_CP003562.2|WP_066217056.1|78032_78464_-|hypothetical-protein
MKNSIFYLFNLLLLISFPLLADDEDEKNKNISYNEVNAPEIKTDPFSEGLINETSLDLFIQGERIMLIDIETDNVLFHSLKEGKDFVRVYTDVTDGNKVLLIWEIKGDDKTGNIKWKIFSYKKFPSTGWRPVNNNTTKVLSFK
>NZ_CP003562.2|WP_158297973.1|79163_79898_-|hypothetical-protein
MDTIKFILFRQINKIKYFLFKYGIHKLLPYSKLYFWSHFFILSKWISDNNRNISYSMFPSKKYLYDKRYSLYQYIIDTEIQNIEIDYFEFGVANGKSFEWWLDNIKNKNASFFGFDTFTGLPENWGYFFRKGDMSCHNILPTINDTRHQFIQGLFQETLLTFLKSHKINKKKIIHLDADLYSSTLFVLTTISSYLKKGDIIIFDEFNVPLGEFKAFKDWIESYYIKYSVIGEVNNFHQIAIKLI
>NZ_CP003562.2|WP_169055558.1|80755_82183_-|IS66-family-transposase
MSKDDKIANLEQENAQLKTQLSMLQSMLYGSKSEKRKQADIPDNQLSIFAQDKEQKTEPSQEITVPAHKRKKKKPVRTALPEHLERVEEVIEPDHDLDGWHKVGEDVTEVLECEPARLFVRRIIRPRYVRDTHQENSEFSQANLPSDLPFPKSSTSASLAAQMVVSKFIDHIPIHRFIKQFERQGVYLKNTTLIDLQKRTADKLSILYDTLTQKIQQSNYLQIDESTIKVMGTGKKGKPHQGYMWYYLDPKAKLLSIHYASGRDRKYLKEHLHNFSGYAQTDGYKAYDYFDQTTTITQLNCWAHARRYFFEAHKGGDKRALEAVNLIGQLYELEKSLKEESNPKIIYQQRQKYALPVINTLFEWAKKLTVLPKSQLGKAIHYLLNREKGLRMYLTDGKLLIDNNPIENKIRPLAIGRKNYMFAGNEEGAKQAAMFYAFFATAKMNDIEPFEWLKSTLEKIDDQPINKIEELLPVK
>NZ_CP003562.2|WP_066207775.1|82207_82549_-|IS66-family-insertion-sequence-element-accessory-protein-TnpB
MLSLRNTDRIYLYSKFTDMRKGFNGLSNIVISLMELDVTNGDIFVFINRSKDKLKLLRFEKGGFSLYYKRLEKGRFELPKGFDKQKNISLSSTEIMMIIEGVSLEKRGQKVRF
>NZ_CP003562.2|WP_066207001.1|82548_82836_-|hypothetical-protein
MSKKAEMYAHIASWKISGLQQKAYCQLHSIKLSTFHYWVVKQRKENTNPAKGSFIPVKVPKKVEQTVKTVTLEYPNGVKLHLSDRELLKEAIHFF

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP003562_1	1.1\|74704\|37\|NZ_CP003562\|PILER-CR,CRISPRCasFinder,CRT	74704-74740	37	NZ_CP003562	Flammeovirga sp. MY04 plasmid unnamed, complete sequence	74704-74740	0	1.0
NZ_CP003562_1	1.2\|74771\|36\|NZ_CP003562\|PILER-CR,CRISPRCasFinder,CRT	74771-74806	36	NZ_CP003562	Flammeovirga sp. MY04 plasmid unnamed, complete sequence	74771-74806	0	1.0
NZ_CP003562_1	1.3\|74837\|35\|NZ_CP003562\|PILER-CR,CRISPRCasFinder,CRT	74837-74871	35	NZ_CP003562	Flammeovirga sp. MY04 plasmid unnamed, complete sequence	74837-74871	0	1.0
NZ_CP003562_1	1.4\|74902\|35\|NZ_CP003562\|PILER-CR,CRISPRCasFinder,CRT	74902-74936	35	NZ_CP003562	Flammeovirga sp. MY04 plasmid unnamed, complete sequence	74902-74936	0	1.0
NZ_CP003562_1	1.5\|74967\|35\|NZ_CP003562\|PILER-CR,CRISPRCasFinder,CRT	74967-75001	35	NZ_CP003562	Flammeovirga sp. MY04 plasmid unnamed, complete sequence	74967-75001	0	1.0
NZ_CP003562_1	1.6\|75032\|36\|NZ_CP003562\|PILER-CR,CRISPRCasFinder,CRT	75032-75067	36	NZ_CP003562	Flammeovirga sp. MY04 plasmid unnamed, complete sequence	75032-75067	0	1.0
NZ_CP003562_1	1.7\|75098\|36\|NZ_CP003562\|PILER-CR,CRISPRCasFinder,CRT	75098-75133	36	NZ_CP003562	Flammeovirga sp. MY04 plasmid unnamed, complete sequence	75098-75133	0	1.0
NZ_CP003562_1	1.8\|75164\|37\|NZ_CP003562\|PILER-CR,CRISPRCasFinder,CRT	75164-75200	37	NZ_CP003562	Flammeovirga sp. MY04 plasmid unnamed, complete sequence	75164-75200	0	1.0
NZ_CP003562_1	1.9\|75231\|36\|NZ_CP003562\|PILER-CR,CRISPRCasFinder,CRT	75231-75266	36	NZ_CP003562	Flammeovirga sp. MY04 plasmid unnamed, complete sequence	75231-75266	0	1.0
NZ_CP003562_1	1.10\|75297\|36\|NZ_CP003562\|PILER-CR,CRISPRCasFinder,CRT	75297-75332	36	NZ_CP003562	Flammeovirga sp. MY04 plasmid unnamed, complete sequence	75297-75332	0	1.0
NZ_CP003562_1	1.10\|75297\|36\|NZ_CP003562\|PILER-CR,CRISPRCasFinder,CRT	75297-75332	36	NZ_CP003562	Flammeovirga sp. MY04 plasmid unnamed, complete sequence	76213-76248	0	1.0
NZ_CP003562_1	1.11\|75363\|35\|NZ_CP003562\|PILER-CR,CRISPRCasFinder,CRT	75363-75397	35	NZ_CP003562	Flammeovirga sp. MY04 plasmid unnamed, complete sequence	75363-75397	0	1.0
NZ_CP003562_1	1.12\|75428\|34\|NZ_CP003562\|PILER-CR,CRISPRCasFinder,CRT	75428-75461	34	NZ_CP003562	Flammeovirga sp. MY04 plasmid unnamed, complete sequence	75428-75461	0	1.0
NZ_CP003562_1	1.13\|75492\|36\|NZ_CP003562\|PILER-CR,CRISPRCasFinder,CRT	75492-75527	36	NZ_CP003562	Flammeovirga sp. MY04 plasmid unnamed, complete sequence	75492-75527	0	1.0
NZ_CP003562_1	1.14\|75558\|35\|NZ_CP003562\|PILER-CR,CRISPRCasFinder,CRT	75558-75592	35	NZ_CP003562	Flammeovirga sp. MY04 plasmid unnamed, complete sequence	75558-75592	0	1.0
NZ_CP003562_1	1.15\|75623\|37\|NZ_CP003562\|PILER-CR,CRISPRCasFinder,CRT	75623-75659	37	NZ_CP003562	Flammeovirga sp. MY04 plasmid unnamed, complete sequence	75623-75659	0	1.0
NZ_CP003562_1	1.16\|75690\|35\|NZ_CP003562\|PILER-CR,CRISPRCasFinder,CRT	75690-75724	35	NZ_CP003562	Flammeovirga sp. MY04 plasmid unnamed, complete sequence	75690-75724	0	1.0
NZ_CP003562_1	1.17\|75755\|36\|NZ_CP003562\|PILER-CR,CRISPRCasFinder,CRT	75755-75790	36	NZ_CP003562	Flammeovirga sp. MY04 plasmid unnamed, complete sequence	75755-75790	0	1.0
NZ_CP003562_1	1.18\|75821\|37\|NZ_CP003562\|PILER-CR,CRISPRCasFinder,CRT	75821-75857	37	NZ_CP003562	Flammeovirga sp. MY04 plasmid unnamed, complete sequence	75821-75857	0	1.0
NZ_CP003562_1	1.19\|75888\|34\|NZ_CP003562\|PILER-CR,CRISPRCasFinder,CRT	75888-75921	34	NZ_CP003562	Flammeovirga sp. MY04 plasmid unnamed, complete sequence	75888-75921	0	1.0
NZ_CP003562_1	1.20\|75952\|34\|NZ_CP003562\|PILER-CR,CRISPRCasFinder,CRT	75952-75985	34	NZ_CP003562	Flammeovirga sp. MY04 plasmid unnamed, complete sequence	75952-75985	0	1.0
NZ_CP003562_1	1.21\|76016\|36\|NZ_CP003562\|PILER-CR,CRISPRCasFinder,CRT	76016-76051	36	NZ_CP003562	Flammeovirga sp. MY04 plasmid unnamed, complete sequence	76016-76051	0	1.0
NZ_CP003562_1	1.22\|76082\|37\|NZ_CP003562\|PILER-CR,CRISPRCasFinder,CRT	76082-76118	37	NZ_CP003562	Flammeovirga sp. MY04 plasmid unnamed, complete sequence	76082-76118	0	1.0
NZ_CP003562_1	1.23\|76149\|34\|NZ_CP003562\|PILER-CR,CRISPRCasFinder,CRT	76149-76182	34	NZ_CP003562	Flammeovirga sp. MY04 plasmid unnamed, complete sequence	76149-76182	0	1.0
NZ_CP003562_1	1.24\|76213\|36\|NZ_CP003562\|PILER-CR,CRISPRCasFinder,CRT	76213-76248	36	NZ_CP003562	Flammeovirga sp. MY04 plasmid unnamed, complete sequence	75297-75332	0	1.0
NZ_CP003562_1	1.24\|76213\|36\|NZ_CP003562\|PILER-CR,CRISPRCasFinder,CRT	76213-76248	36	NZ_CP003562	Flammeovirga sp. MY04 plasmid unnamed, complete sequence	76213-76248	0	1.0
NZ_CP003562_1	1.25\|76279\|36\|NZ_CP003562\|PILER-CR,CRISPRCasFinder,CRT	76279-76314	36	NZ_CP003562	Flammeovirga sp. MY04 plasmid unnamed, complete sequence	76279-76314	0	1.0
NZ_CP003562_1	1.26\|76345\|36\|NZ_CP003562\|PILER-CR,CRISPRCasFinder,CRT	76345-76380	36	NZ_CP003562	Flammeovirga sp. MY04 plasmid unnamed, complete sequence	76345-76380	0	1.0
NZ_CP003562_1	1.27\|76411\|37\|NZ_CP003562\|PILER-CR,CRISPRCasFinder,CRT	76411-76447	37	NZ_CP003562	Flammeovirga sp. MY04 plasmid unnamed, complete sequence	76411-76447	0	1.0
NZ_CP003562_1	1.28\|76478\|37\|NZ_CP003562\|PILER-CR,CRISPRCasFinder,CRT	76478-76514	37	NZ_CP003562	Flammeovirga sp. MY04 plasmid unnamed, complete sequence	76478-76514	0	1.0
NZ_CP003562_1	1.29\|76545\|35\|NZ_CP003562\|PILER-CR,CRISPRCasFinder,CRT	76545-76579	35	NZ_CP003562	Flammeovirga sp. MY04 plasmid unnamed, complete sequence	76545-76579	0	1.0
NZ_CP003562_1	1.30\|76610\|36\|NZ_CP003562\|PILER-CR,CRISPRCasFinder,CRT	76610-76645	36	NZ_CP003562	Flammeovirga sp. MY04 plasmid unnamed, complete sequence	76610-76645	0	1.0
NZ_CP003562_1	1.31\|76676\|37\|NZ_CP003562\|PILER-CR,CRISPRCasFinder,CRT	76676-76712	37	NZ_CP003562	Flammeovirga sp. MY04 plasmid unnamed, complete sequence	76676-76712	0	1.0
NZ_CP003562_1	1.32\|76743\|36\|NZ_CP003562\|PILER-CR,CRISPRCasFinder,CRT	76743-76778	36	NZ_CP003562	Flammeovirga sp. MY04 plasmid unnamed, complete sequence	76743-76778	0	1.0
NZ_CP003562_1	1.33\|76809\|37\|NZ_CP003562\|PILER-CR,CRISPRCasFinder,CRT	76809-76845	37	NZ_CP003562	Flammeovirga sp. MY04 plasmid unnamed, complete sequence	76809-76845	0	1.0
NZ_CP003562_1	1.34\|76876\|32\|NZ_CP003562\|PILER-CR,CRISPRCasFinder,CRT	76876-76907	32	NZ_CP003562	Flammeovirga sp. MY04 plasmid unnamed, complete sequence	76876-76907	0	1.0
NZ_CP003562_1	1.35\|76938\|36\|NZ_CP003562\|PILER-CR,CRISPRCasFinder,CRT	76938-76973	36	NZ_CP003562	Flammeovirga sp. MY04 plasmid unnamed, complete sequence	76938-76973	0	1.0
NZ_CP003562_1	1.36\|77004\|36\|NZ_CP003562\|CRISPRCasFinder,CRT	77004-77039	36	NZ_CP003562	Flammeovirga sp. MY04 plasmid unnamed, complete sequence	77004-77039	0	1.0
NZ_CP003562_1	1.2\|74771\|36\|NZ_CP003562\|PILER-CR,CRISPRCasFinder,CRT	74771-74806	36	NZ_CP019793	Chlamydia gallinacea strain JX-1 plasmid pJX1, complete sequence	2362-2397	9	0.75
NZ_CP003562_1	1.2\|74771\|36\|NZ_CP003562\|PILER-CR,CRISPRCasFinder,CRT	74771-74806	36	NZ_CP015841	Chlamydia gallinacea 08-1274/3 plasmid p1274, complete sequence	6371-6406	9	0.75
NZ_CP003562_1	1.12\|75428\|34\|NZ_CP003562\|PILER-CR,CRISPRCasFinder,CRT	75428-75461	34	NZ_LR699116	Aquicella lusitana strain SGT-39 plasmid 3	64650-64683	9	0.735
NZ_CP003562_1	1.34\|76876\|32\|NZ_CP003562\|PILER-CR,CRISPRCasFinder,CRT	76876-76907	32	NZ_LT604075	Lactobacillus salivarius isolate LPM01 plasmid II	194885-194916	9	0.719
NZ_CP003562_1	1.34\|76876\|32\|NZ_CP003562\|PILER-CR,CRISPRCasFinder,CRT	76876-76907	32	MK903282	Escherichia phage Mansfield, complete genome	32617-32648	9	0.719
NZ_CP003562_1	1.34\|76876\|32\|NZ_CP003562\|PILER-CR,CRISPRCasFinder,CRT	76876-76907	32	NC_048194	Escherichia phage vB_EcoM_WFH, complete genome	32590-32621	9	0.719
NZ_CP003562_1	1.34\|76876\|32\|NZ_CP003562\|PILER-CR,CRISPRCasFinder,CRT	76876-76907	32	MT446405	UNVERIFIED: Escherichia virus TH32, complete genome	62799-62830	9	0.719
NZ_CP003562_1	1.34\|76876\|32\|NZ_CP003562\|PILER-CR,CRISPRCasFinder,CRT	76876-76907	32	MT446408	UNVERIFIED: Escherichia virus TH35, complete genome	23359-23390	9	0.719
NZ_CP003562_1	1.28\|76478\|37\|NZ_CP003562\|PILER-CR,CRISPRCasFinder,CRT	76478-76514	37	MT080584	UNVERIFIED: Staphylococcus phage vB_SauM_EW15, complete genome	27476-27512	10	0.73
NZ_CP003562_1	1.28\|76478\|37\|NZ_CP003562\|PILER-CR,CRISPRCasFinder,CRT	76478-76514	37	MT080590	UNVERIFIED: Staphylococcus phage vB_SauM_EW27, complete genome	108389-108425	10	0.73
NZ_CP003562_1	1.28\|76478\|37\|NZ_CP003562\|PILER-CR,CRISPRCasFinder,CRT	76478-76514	37	KY779848	Staphylococcus phage qdsa001, complete genome	35579-35615	10	0.73
NZ_CP003562_1	1.28\|76478\|37\|NZ_CP003562\|PILER-CR,CRISPRCasFinder,CRT	76478-76514	37	KX532239	Staphylococcus phage StAP1, complete genome	17219-17255	10	0.73
NZ_CP003562_1	1.28\|76478\|37\|NZ_CP003562\|PILER-CR,CRISPRCasFinder,CRT	76478-76514	37	LC492751	Staphylococcus phage KSAP7 genomic DNA, compelete genome	3828-3864	10	0.73
NZ_CP003562_1	1.28\|76478\|37\|NZ_CP003562\|PILER-CR,CRISPRCasFinder,CRT	76478-76514	37	LC492752	Staphylococcus phage KSAP11 genomic DNA, compelete genome	3828-3864	10	0.73
NZ_CP003562_1	1.28\|76478\|37\|NZ_CP003562\|PILER-CR,CRISPRCasFinder,CRT	76478-76514	37	MT080587	UNVERIFIED: Staphylococcus phage vB_SauM_EW20, complete genome	36351-36387	10	0.73
NZ_CP003562_1	1.28\|76478\|37\|NZ_CP003562\|PILER-CR,CRISPRCasFinder,CRT	76478-76514	37	NC_022090	Staphylococcus phage vB_SauM_Remus, complete genome	3641-3677	10	0.73
NZ_CP003562_1	1.28\|76478\|37\|NZ_CP003562\|PILER-CR,CRISPRCasFinder,CRT	76478-76514	37	MT080588	UNVERIFIED: Staphylococcus phage vB_SauM_EW22, complete genome	12538-12574	10	0.73
NZ_CP003562_1	1.28\|76478\|37\|NZ_CP003562\|PILER-CR,CRISPRCasFinder,CRT	76478-76514	37	MT080595	UNVERIFIED: Staphylococcus phage vB_SauM_EW41, partial genome	129335-129371	10	0.73
NZ_CP003562_1	1.28\|76478\|37\|NZ_CP003562\|PILER-CR,CRISPRCasFinder,CRT	76478-76514	37	NC_020877	Staphylococcus phage vB_SauM_Romulus, complete genome	3641-3677	10	0.73
NZ_CP003562_1	1.29\|76545\|35\|NZ_CP003562\|PILER-CR,CRISPRCasFinder,CRT	76545-76579	35	MN694808	Marine virus AFVG_250M14, complete genome	33593-33627	10	0.714
NZ_CP003562_1	1.34\|76876\|32\|NZ_CP003562\|PILER-CR,CRISPRCasFinder,CRT	76876-76907	32	NZ_CP019656	Paenibacillus larvae subsp. larvae strain Eric_III plasmid unnamed1, complete sequence	41657-41688	10	0.688
NZ_CP003562_1	1.34\|76876\|32\|NZ_CP003562\|PILER-CR,CRISPRCasFinder,CRT	76876-76907	32	NZ_KU525621	Bacillus anthracis strain P.NO2 plasmid pXO2, complete sequence	7614-7645	10	0.688
NZ_CP003562_1	1.34\|76876\|32\|NZ_CP003562\|PILER-CR,CRISPRCasFinder,CRT	76876-76907	32	NC_014332	Bacillus cereus biovar anthracis str. CI plasmid pCI-XO2, complete sequence	8735-8766	10	0.688
NZ_CP003562_1	1.34\|76876\|32\|NZ_CP003562\|PILER-CR,CRISPRCasFinder,CRT	76876-76907	32	NC_012577	Bacillus anthracis str. CDC 684 plasmid pX02, complete sequence	6266-6297	10	0.688
NZ_CP003562_1	1.34\|76876\|32\|NZ_CP003562\|PILER-CR,CRISPRCasFinder,CRT	76876-76907	32	NZ_CP015778	Bacillus anthracis strain Tangail-1 plasmid pXO2, complete sequence	7830-7861	10	0.688
NZ_CP003562_1	1.34\|76876\|32\|NZ_CP003562\|PILER-CR,CRISPRCasFinder,CRT	76876-76907	32	NZ_CP018905	Bacillus anthracis strain Tyrol 4675 plasmid pXO2, complete sequence	7828-7859	10	0.688
NZ_CP003562_1	1.34\|76876\|32\|NZ_CP003562\|PILER-CR,CRISPRCasFinder,CRT	76876-76907	32	NZ_CP023003	Bacillus anthracis strain 14RA5914 plasmid pX02, complete sequence	38039-38070	10	0.688
NZ_CP003562_1	1.34\|76876\|32\|NZ_CP003562\|PILER-CR,CRISPRCasFinder,CRT	76876-76907	32	NZ_AP019733	Bacillus anthracis strain PCr plasmid PCr-pXO2	43885-43916	10	0.688
NZ_CP003562_1	1.34\|76876\|32\|NZ_CP003562\|PILER-CR,CRISPRCasFinder,CRT	76876-76907	32	NZ_AP018445	Bacillus anthracis strain CZC5 plasmid pXO2, complete sequence	7830-7861	10	0.688
NZ_CP003562_1	1.34\|76876\|32\|NZ_CP003562\|PILER-CR,CRISPRCasFinder,CRT	76876-76907	32	NZ_CP029325	Bacillus anthracis strain 17OD930 plasmid pXO2, complete sequence	90927-90958	10	0.688
NZ_CP003562_1	1.34\|76876\|32\|NZ_CP003562\|PILER-CR,CRISPRCasFinder,CRT	76876-76907	32	NC_012655	Bacillus anthracis str. A0248 plasmid pXO2, complete sequence	8873-8904	10	0.688
NZ_CP003562_1	1.34\|76876\|32\|NZ_CP003562\|PILER-CR,CRISPRCasFinder,CRT	76876-76907	32	NC_007323	Bacillus anthracis str. 'Ames Ancestor' plasmid pXO2, complete sequence	7830-7861	10	0.688
NZ_CP003562_1	1.34\|76876\|32\|NZ_CP003562\|PILER-CR,CRISPRCasFinder,CRT	76876-76907	32	NZ_CP010854	Bacillus anthracis strain A1144 plasmid pXO2, complete sequence	7998-8029	10	0.688
NZ_CP003562_1	1.34\|76876\|32\|NZ_CP003562\|PILER-CR,CRISPRCasFinder,CRT	76876-76907	32	NZ_CP007617	Bacillus anthracis strain 2000031021 plasmid pXO2, complete sequence	78250-78281	10	0.688
NZ_CP003562_1	1.34\|76876\|32\|NZ_CP003562\|PILER-CR,CRISPRCasFinder,CRT	76876-76907	32	NZ_CP008848	Bacillus anthracis strain HYU01 plasmid pX02, complete sequence	7828-7859	10	0.688
NZ_CP003562_1	1.34\|76876\|32\|NZ_CP003562\|PILER-CR,CRISPRCasFinder,CRT	76876-76907	32	NZ_CP006744	Bacillus anthracis str. SVA11 plasmid pXO2, complete sequence	7828-7859	10	0.688
NZ_CP003562_1	1.34\|76876\|32\|NZ_CP003562\|PILER-CR,CRISPRCasFinder,CRT	76876-76907	32	NZ_AP014835	Bacillus anthracis strain Shikan-NIID plasmid pXO2	7827-7858	10	0.688
NZ_CP003562_1	1.34\|76876\|32\|NZ_CP003562\|PILER-CR,CRISPRCasFinder,CRT	76876-76907	32	NZ_CP029807	Bacillus anthracis strain London_499 plasmid pX02, complete sequence	7830-7861	10	0.688
NZ_CP003562_1	1.34\|76876\|32\|NZ_CP003562\|PILER-CR,CRISPRCasFinder,CRT	76876-76907	32	NC_002146	Bacillus anthracis plasmid pXO2, complete sequence	8324-8355	10	0.688
NZ_CP003562_1	1.34\|76876\|32\|NZ_CP003562\|PILER-CR,CRISPRCasFinder,CRT	76876-76907	32	NC_017727	Bacillus anthracis str. H9401 plasmid BAP2, complete sequence	7830-7861	10	0.688
NZ_CP003562_1	1.34\|76876\|32\|NZ_CP003562\|PILER-CR,CRISPRCasFinder,CRT	76876-76907	32	NZ_CP009314	Bacillus anthracis str. Turkey32 strain 35 plasmid unnamed, complete sequence	14678-14709	10	0.688
NZ_CP003562_1	1.34\|76876\|32\|NZ_CP003562\|PILER-CR,CRISPRCasFinder,CRT	76876-76907	32	NZ_CP014178	Bacillus anthracis strain Stendal plasmid pXO2, complete sequence	7830-7861	10	0.688
NZ_CP003562_1	1.34\|76876\|32\|NZ_CP003562\|PILER-CR,CRISPRCasFinder,CRT	76876-76907	32	NZ_CP009475	Bacillus anthracis strain Pasteur plasmid pXO2, complete sequence	30425-30456	10	0.688
NZ_CP003562_1	1.34\|76876\|32\|NZ_CP003562\|PILER-CR,CRISPRCasFinder,CRT	76876-76907	32	NZ_CP009900	Bacillus anthracis strain 2002013094 plasmid pXO2, complete sequence	87702-87733	10	0.688
NZ_CP003562_1	1.34\|76876\|32\|NZ_CP003562\|PILER-CR,CRISPRCasFinder,CRT	76876-76907	32	NZ_CP009339	Bacillus anthracis strain Ohio ACB plasmid 2, complete sequence	27121-27152	10	0.688
NZ_CP003562_1	1.34\|76876\|32\|NZ_CP003562\|PILER-CR,CRISPRCasFinder,CRT	76876-76907	32	NZ_CP009695	Bacillus anthracis strain RA3 plasmid pXO2, complete sequence	1154-1185	10	0.688
NZ_CP003562_1	1.34\|76876\|32\|NZ_CP003562\|PILER-CR,CRISPRCasFinder,CRT	76876-76907	32	NZ_CP009462	Bacillus anthracis strain SK-102 plasmid pXO2, complete sequence	35430-35461	10	0.688
NZ_CP003562_1	1.34\|76876\|32\|NZ_CP003562\|PILER-CR,CRISPRCasFinder,CRT	76876-76907	32	NZ_CP009698	Bacillus anthracis strain BA1035 plasmid pXO2, complete sequence	5071-5102	10	0.688
NZ_CP003562_1	1.34\|76876\|32\|NZ_CP003562\|PILER-CR,CRISPRCasFinder,CRT	76876-76907	32	NZ_CP009542	Bacillus anthracis strain BA1015 plasmid pXO2, complete sequence	26698-26729	10	0.688
NZ_CP003562_1	1.34\|76876\|32\|NZ_CP003562\|PILER-CR,CRISPRCasFinder,CRT	76876-76907	32	NZ_CP010320	Bacillus anthracis strain Canadian Bison isolate A0369 plasmid 2, complete sequence	92689-92720	10	0.688
NZ_CP003562_1	1.34\|76876\|32\|NZ_CP003562\|PILER-CR,CRISPRCasFinder,CRT	76876-76907	32	NZ_CP009329	Bacillus anthracis strain K3 plasmid 2, complete sequence	42106-42137	10	0.688
NZ_CP003562_1	1.34\|76876\|32\|NZ_CP003562\|PILER-CR,CRISPRCasFinder,CRT	76876-76907	32	NZ_CP009326	Bacillus anthracis strain Vollum 1B plasmid 2, complete sequence	26583-26614	10	0.688
NZ_CP003562_1	1.34\|76876\|32\|NZ_CP003562\|PILER-CR,CRISPRCasFinder,CRT	76876-76907	32	NZ_CP009979	Bacillus anthracis strain Ames isolate BACI008 plasmid unnamed2, complete sequence	65649-65680	10	0.688
NZ_CP003562_1	1.34\|76876\|32\|NZ_CP003562\|PILER-CR,CRISPRCasFinder,CRT	76876-76907	32	NZ_CP001972	Bacillus anthracis str. A16 plasmid pXO2, complete sequence	7830-7861	10	0.688
NZ_CP003562_1	1.34\|76876\|32\|NZ_CP003562\|PILER-CR,CRISPRCasFinder,CRT	76876-76907	32	NZ_CP047133	Bacillus anthracis str. BF1 plasmid pXO2, complete sequence	7828-7859	10	0.688

1. spacer 1.1|74704|37|NZ_CP003562|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP003562 (Flammeovirga sp. MY04 plasmid unnamed, complete sequence) position: , mismatch: 0, identity: 1.0

agattaattagtgagctaaattctaaaggacacaata	CRISPR spacer
agattaattagtgagctaaattctaaaggacacaata	Protospacer
*************************************

2. spacer 1.2|74771|36|NZ_CP003562|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP003562 (Flammeovirga sp. MY04 plasmid unnamed, complete sequence) position: , mismatch: 0, identity: 1.0

gcgaaaagataaatctaaattttctttcggggcagc	CRISPR spacer
gcgaaaagataaatctaaattttctttcggggcagc	Protospacer
************************************

3. spacer 1.3|74837|35|NZ_CP003562|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP003562 (Flammeovirga sp. MY04 plasmid unnamed, complete sequence) position: , mismatch: 0, identity: 1.0

tttgcaggcgatacagctattagaagtagtggcgg	CRISPR spacer
tttgcaggcgatacagctattagaagtagtggcgg	Protospacer
***********************************

4. spacer 1.4|74902|35|NZ_CP003562|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP003562 (Flammeovirga sp. MY04 plasmid unnamed, complete sequence) position: , mismatch: 0, identity: 1.0

acaaaagcaactcttaatttatcgctgttttgttc	CRISPR spacer
acaaaagcaactcttaatttatcgctgttttgttc	Protospacer
***********************************

5. spacer 1.5|74967|35|NZ_CP003562|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP003562 (Flammeovirga sp. MY04 plasmid unnamed, complete sequence) position: , mismatch: 0, identity: 1.0

atgattagaaggcgattcttcacgattgtaaaaca	CRISPR spacer
atgattagaaggcgattcttcacgattgtaaaaca	Protospacer
***********************************

6. spacer 1.6|75032|36|NZ_CP003562|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP003562 (Flammeovirga sp. MY04 plasmid unnamed, complete sequence) position: , mismatch: 0, identity: 1.0

aaaagaaaaacaaaagatagaaagtacatttatctt	CRISPR spacer
aaaagaaaaacaaaagatagaaagtacatttatctt	Protospacer
************************************

7. spacer 1.7|75098|36|NZ_CP003562|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP003562 (Flammeovirga sp. MY04 plasmid unnamed, complete sequence) position: , mismatch: 0, identity: 1.0

tcactatacgtttcactcgttgggtctgctctttca	CRISPR spacer
tcactatacgtttcactcgttgggtctgctctttca	Protospacer
************************************

8. spacer 1.8|75164|37|NZ_CP003562|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP003562 (Flammeovirga sp. MY04 plasmid unnamed, complete sequence) position: , mismatch: 0, identity: 1.0

aggtaagctcagttaaagtaatattggtttcgttatt	CRISPR spacer
aggtaagctcagttaaagtaatattggtttcgttatt	Protospacer
*************************************

9. spacer 1.9|75231|36|NZ_CP003562|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP003562 (Flammeovirga sp. MY04 plasmid unnamed, complete sequence) position: , mismatch: 0, identity: 1.0

ccaacggagcctttgaagtttcattgcaagaataat	CRISPR spacer
ccaacggagcctttgaagtttcattgcaagaataat	Protospacer
************************************

10. spacer 1.10|75297|36|NZ_CP003562|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP003562 (Flammeovirga sp. MY04 plasmid unnamed, complete sequence) position: , mismatch: 0, identity: 1.0

ataagttcgtcatcttcatcgtgatagcagcgacaa	CRISPR spacer
ataagttcgtcatcttcatcgtgatagcagcgacaa	Protospacer
************************************

11. spacer 1.10|75297|36|NZ_CP003562|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP003562 (Flammeovirga sp. MY04 plasmid unnamed, complete sequence) position: , mismatch: 0, identity: 1.0

ataagttcgtcatcttcatcgtgatagcagcgacaa	CRISPR spacer
ataagttcgtcatcttcatcgtgatagcagcgacaa	Protospacer
************************************

12. spacer 1.11|75363|35|NZ_CP003562|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP003562 (Flammeovirga sp. MY04 plasmid unnamed, complete sequence) position: , mismatch: 0, identity: 1.0

atcatcatacgggcaaaataattgattgacacacg	CRISPR spacer
atcatcatacgggcaaaataattgattgacacacg	Protospacer
***********************************

13. spacer 1.12|75428|34|NZ_CP003562|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP003562 (Flammeovirga sp. MY04 plasmid unnamed, complete sequence) position: , mismatch: 0, identity: 1.0

gaaggtacttatttagtaacttatacggcccctg	CRISPR spacer
gaaggtacttatttagtaacttatacggcccctg	Protospacer
**********************************

14. spacer 1.13|75492|36|NZ_CP003562|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP003562 (Flammeovirga sp. MY04 plasmid unnamed, complete sequence) position: , mismatch: 0, identity: 1.0

ttggataataaaggaggtcgtttagctatacttcat	CRISPR spacer
ttggataataaaggaggtcgtttagctatacttcat	Protospacer
************************************

15. spacer 1.14|75558|35|NZ_CP003562|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP003562 (Flammeovirga sp. MY04 plasmid unnamed, complete sequence) position: , mismatch: 0, identity: 1.0

cacacaagcactcccccgaatcgccccgatacaga	CRISPR spacer
cacacaagcactcccccgaatcgccccgatacaga	Protospacer
***********************************

16. spacer 1.15|75623|37|NZ_CP003562|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP003562 (Flammeovirga sp. MY04 plasmid unnamed, complete sequence) position: , mismatch: 0, identity: 1.0

ttgacgacgtgacgcaggagtggacaacaaagcaact	CRISPR spacer
ttgacgacgtgacgcaggagtggacaacaaagcaact	Protospacer
*************************************

17. spacer 1.16|75690|35|NZ_CP003562|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP003562 (Flammeovirga sp. MY04 plasmid unnamed, complete sequence) position: , mismatch: 0, identity: 1.0

agtaccaggttctcttcttaaggtttacgttaaga	CRISPR spacer
agtaccaggttctcttcttaaggtttacgttaaga	Protospacer
***********************************

18. spacer 1.17|75755|36|NZ_CP003562|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP003562 (Flammeovirga sp. MY04 plasmid unnamed, complete sequence) position: , mismatch: 0, identity: 1.0

cttgatctttcacagaagaggtgtagacagatgata	CRISPR spacer
cttgatctttcacagaagaggtgtagacagatgata	Protospacer
************************************

19. spacer 1.18|75821|37|NZ_CP003562|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP003562 (Flammeovirga sp. MY04 plasmid unnamed, complete sequence) position: , mismatch: 0, identity: 1.0

aatactgctgaagttcctgagcttggattaaaagtaa	CRISPR spacer
aatactgctgaagttcctgagcttggattaaaagtaa	Protospacer
*************************************

20. spacer 1.19|75888|34|NZ_CP003562|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP003562 (Flammeovirga sp. MY04 plasmid unnamed, complete sequence) position: , mismatch: 0, identity: 1.0

ttctcgcgaaataataactaggggagttaaacta	CRISPR spacer
ttctcgcgaaataataactaggggagttaaacta	Protospacer
**********************************

21. spacer 1.20|75952|34|NZ_CP003562|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP003562 (Flammeovirga sp. MY04 plasmid unnamed, complete sequence) position: , mismatch: 0, identity: 1.0

aatgaaatactgggtataattgtttgcatgttaa	CRISPR spacer
aatgaaatactgggtataattgtttgcatgttaa	Protospacer
**********************************

22. spacer 1.21|76016|36|NZ_CP003562|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP003562 (Flammeovirga sp. MY04 plasmid unnamed, complete sequence) position: , mismatch: 0, identity: 1.0

gtaacagtacggccaagatcatcaacgcctgttaat	CRISPR spacer
gtaacagtacggccaagatcatcaacgcctgttaat	Protospacer
************************************

23. spacer 1.22|76082|37|NZ_CP003562|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP003562 (Flammeovirga sp. MY04 plasmid unnamed, complete sequence) position: , mismatch: 0, identity: 1.0

agagtcatagacacccagcaggacattgacgactgga	CRISPR spacer
agagtcatagacacccagcaggacattgacgactgga	Protospacer
*************************************

24. spacer 1.23|76149|34|NZ_CP003562|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP003562 (Flammeovirga sp. MY04 plasmid unnamed, complete sequence) position: , mismatch: 0, identity: 1.0

agcaatccctctaacgtagcatccccttctaaat	CRISPR spacer
agcaatccctctaacgtagcatccccttctaaat	Protospacer
**********************************

25. spacer 1.24|76213|36|NZ_CP003562|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP003562 (Flammeovirga sp. MY04 plasmid unnamed, complete sequence) position: , mismatch: 0, identity: 1.0

ataagttcgtcatcttcatcgtgatagcagcgacaa	CRISPR spacer
ataagttcgtcatcttcatcgtgatagcagcgacaa	Protospacer
************************************

26. spacer 1.24|76213|36|NZ_CP003562|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP003562 (Flammeovirga sp. MY04 plasmid unnamed, complete sequence) position: , mismatch: 0, identity: 1.0

ataagttcgtcatcttcatcgtgatagcagcgacaa	CRISPR spacer
ataagttcgtcatcttcatcgtgatagcagcgacaa	Protospacer
************************************

27. spacer 1.25|76279|36|NZ_CP003562|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP003562 (Flammeovirga sp. MY04 plasmid unnamed, complete sequence) position: , mismatch: 0, identity: 1.0

actgcagggttttggattcatagtggaggcatatca	CRISPR spacer
actgcagggttttggattcatagtggaggcatatca	Protospacer
************************************

28. spacer 1.26|76345|36|NZ_CP003562|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP003562 (Flammeovirga sp. MY04 plasmid unnamed, complete sequence) position: , mismatch: 0, identity: 1.0

tttctctagaggaacgactgcttctgtgcctgcttc	CRISPR spacer
tttctctagaggaacgactgcttctgtgcctgcttc	Protospacer
************************************

29. spacer 1.27|76411|37|NZ_CP003562|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP003562 (Flammeovirga sp. MY04 plasmid unnamed, complete sequence) position: , mismatch: 0, identity: 1.0

actgtatatgagttacgccatcataatttcgacatgt	CRISPR spacer
actgtatatgagttacgccatcataatttcgacatgt	Protospacer
*************************************

30. spacer 1.28|76478|37|NZ_CP003562|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP003562 (Flammeovirga sp. MY04 plasmid unnamed, complete sequence) position: , mismatch: 0, identity: 1.0

ttgattaagataagttgttaactcttccataaatgga	CRISPR spacer
ttgattaagataagttgttaactcttccataaatgga	Protospacer
*************************************

31. spacer 1.29|76545|35|NZ_CP003562|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP003562 (Flammeovirga sp. MY04 plasmid unnamed, complete sequence) position: , mismatch: 0, identity: 1.0

atggaaatgatggaagattcagaagggttattaat	CRISPR spacer
atggaaatgatggaagattcagaagggttattaat	Protospacer
***********************************

32. spacer 1.30|76610|36|NZ_CP003562|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP003562 (Flammeovirga sp. MY04 plasmid unnamed, complete sequence) position: , mismatch: 0, identity: 1.0

atcattttctttctttaatattcttcccgctaaatc	CRISPR spacer
atcattttctttctttaatattcttcccgctaaatc	Protospacer
************************************

33. spacer 1.31|76676|37|NZ_CP003562|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP003562 (Flammeovirga sp. MY04 plasmid unnamed, complete sequence) position: , mismatch: 0, identity: 1.0

aaacaaggtgatatgattgcaagatcatcaactgata	CRISPR spacer
aaacaaggtgatatgattgcaagatcatcaactgata	Protospacer
*************************************

34. spacer 1.32|76743|36|NZ_CP003562|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP003562 (Flammeovirga sp. MY04 plasmid unnamed, complete sequence) position: , mismatch: 0, identity: 1.0

tgttgtttttacatgggtttgatgctacacgttttc	CRISPR spacer
tgttgtttttacatgggtttgatgctacacgttttc	Protospacer
************************************

35. spacer 1.33|76809|37|NZ_CP003562|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP003562 (Flammeovirga sp. MY04 plasmid unnamed, complete sequence) position: , mismatch: 0, identity: 1.0

atacctttcaatcgatcaggatcaacaaccccgcttt	CRISPR spacer
atacctttcaatcgatcaggatcaacaaccccgcttt	Protospacer
*************************************

36. spacer 1.34|76876|32|NZ_CP003562|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP003562 (Flammeovirga sp. MY04 plasmid unnamed, complete sequence) position: , mismatch: 0, identity: 1.0

ttctttcttcttttaaaattggttcagccacc	CRISPR spacer
ttctttcttcttttaaaattggttcagccacc	Protospacer
********************************

37. spacer 1.35|76938|36|NZ_CP003562|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP003562 (Flammeovirga sp. MY04 plasmid unnamed, complete sequence) position: , mismatch: 0, identity: 1.0

atgatattgtctggctgtgcttcgccttcccaattg	CRISPR spacer
atgatattgtctggctgtgcttcgccttcccaattg	Protospacer
************************************

38. spacer 1.36|77004|36|NZ_CP003562|CRISPRCasFinder,CRT matches to NZ_CP003562 (Flammeovirga sp. MY04 plasmid unnamed, complete sequence) position: , mismatch: 0, identity: 1.0

gatgatgaggttattggtgatatgtctgaatatctt	CRISPR spacer
gatgatgaggttattggtgatatgtctgaatatctt	Protospacer
************************************

39. spacer 1.2|74771|36|NZ_CP003562|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP019793 (Chlamydia gallinacea strain JX-1 plasmid pJX1, complete sequence) position: , mismatch: 9, identity: 0.75

gcgaaaagataaatctaaattttctttcggggcagc	CRISPR spacer
ttgaaaagataaatctaaaaattctttcagtaaacc	Protospacer
 .*****************  *******.* . * *

40. spacer 1.2|74771|36|NZ_CP003562|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP015841 (Chlamydia gallinacea 08-1274/3 plasmid p1274, complete sequence) position: , mismatch: 9, identity: 0.75

gcgaaaagataaatctaaattttctttcggggcagc	CRISPR spacer
ttgaaaagataaatctaaaaattctttcagtaaacc	Protospacer
 .*****************  *******.* . * *

41. spacer 1.12|75428|34|NZ_CP003562|PILER-CR,CRISPRCasFinder,CRT matches to NZ_LR699116 (Aquicella lusitana strain SGT-39 plasmid 3) position: , mismatch: 9, identity: 0.735

gaaggtacttatttagtaacttatacggcccctg	CRISPR spacer
gaaggtacttatttggtaactgatgaaggcctac	Protospacer
**************.****** **. .* **.

42. spacer 1.34|76876|32|NZ_CP003562|PILER-CR,CRISPRCasFinder,CRT matches to NZ_LT604075 (Lactobacillus salivarius isolate LPM01 plasmid II) position: , mismatch: 9, identity: 0.719

ttctttcttcttttaaaattggttcagccacc	CRISPR spacer
catcttcttctgttaaaattggtgcagaatcc	Protospacer
. ..******* *********** ***   **

43. spacer 1.34|76876|32|NZ_CP003562|PILER-CR,CRISPRCasFinder,CRT matches to MK903282 (Escherichia phage Mansfield, complete genome) position: , mismatch: 9, identity: 0.719

ttctttcttcttttaaaattggttcagccacc	CRISPR spacer
ctcaatcttcttttgaaattgcttcagcagta	Protospacer
.**  *********.****** ****** ..

44. spacer 1.34|76876|32|NZ_CP003562|PILER-CR,CRISPRCasFinder,CRT matches to NC_048194 (Escherichia phage vB_EcoM_WFH, complete genome) position: , mismatch: 9, identity: 0.719

ttctttcttcttttaaaattggttcagccacc	CRISPR spacer
ctcaatcttcttttgaaattgcttcagcagta	Protospacer
.**  *********.****** ****** ..

45. spacer 1.34|76876|32|NZ_CP003562|PILER-CR,CRISPRCasFinder,CRT matches to MT446405 (UNVERIFIED: Escherichia virus TH32, complete genome) position: , mismatch: 9, identity: 0.719

ttctttcttcttttaaaattggttcagccacc	CRISPR spacer
ctcaatcttcttttgaaattgcttcagcagtg	Protospacer
.**  *********.****** ****** ..

46. spacer 1.34|76876|32|NZ_CP003562|PILER-CR,CRISPRCasFinder,CRT matches to MT446408 (UNVERIFIED: Escherichia virus TH35, complete genome) position: , mismatch: 9, identity: 0.719

ttctttcttcttttaaaattggttcagccacc	CRISPR spacer
ctcaatcttcttttgaaattgcttcagcagta	Protospacer
.**  *********.****** ****** ..

47. spacer 1.28|76478|37|NZ_CP003562|PILER-CR,CRISPRCasFinder,CRT matches to MT080584 (UNVERIFIED: Staphylococcus phage vB_SauM_EW15, complete genome) position: , mismatch: 10, identity: 0.73

ttgattaagataagttgttaactcttccataaatgga	CRISPR spacer
atgtttaagataagtttttaactcttcatctacttgt	Protospacer
 ** ************ **********  . * * *

48. spacer 1.28|76478|37|NZ_CP003562|PILER-CR,CRISPRCasFinder,CRT matches to MT080590 (UNVERIFIED: Staphylococcus phage vB_SauM_EW27, complete genome) position: , mismatch: 10, identity: 0.73

ttgattaagataagttgttaactcttccataaatgga	CRISPR spacer
atgtttaagataagtttttaactcttcatctacttgt	Protospacer
 ** ************ **********  . * * *

49. spacer 1.28|76478|37|NZ_CP003562|PILER-CR,CRISPRCasFinder,CRT matches to KY779848 (Staphylococcus phage qdsa001, complete genome) position: , mismatch: 10, identity: 0.73

ttgattaagataagttgttaactcttccataaatgga	CRISPR spacer
atgtttaagataagtttttaactcttcatctacttgt	Protospacer
 ** ************ **********  . * * *

50. spacer 1.28|76478|37|NZ_CP003562|PILER-CR,CRISPRCasFinder,CRT matches to KX532239 (Staphylococcus phage StAP1, complete genome) position: , mismatch: 10, identity: 0.73

ttgattaagataagttgttaactcttccataaatgga	CRISPR spacer
atgtttaagataagtttttaactcttcatctacttgt	Protospacer
 ** ************ **********  . * * *

51. spacer 1.28|76478|37|NZ_CP003562|PILER-CR,CRISPRCasFinder,CRT matches to LC492751 (Staphylococcus phage KSAP7 genomic DNA, compelete genome) position: , mismatch: 10, identity: 0.73

ttgattaagataagttgttaactcttccataaatgga	CRISPR spacer
atgtttaagataagtttttaactcttcatctacttgt	Protospacer
 ** ************ **********  . * * *

52. spacer 1.28|76478|37|NZ_CP003562|PILER-CR,CRISPRCasFinder,CRT matches to LC492752 (Staphylococcus phage KSAP11 genomic DNA, compelete genome) position: , mismatch: 10, identity: 0.73

ttgattaagataagttgttaactcttccataaatgga	CRISPR spacer
atgtttaagataagtttttaactcttcatctacttgt	Protospacer
 ** ************ **********  . * * *

53. spacer 1.28|76478|37|NZ_CP003562|PILER-CR,CRISPRCasFinder,CRT matches to MT080587 (UNVERIFIED: Staphylococcus phage vB_SauM_EW20, complete genome) position: , mismatch: 10, identity: 0.73

ttgattaagataagttgttaactcttccataaatgga	CRISPR spacer
atgtttaagataagtttttaactcttcatctacttgt	Protospacer
 ** ************ **********  . * * *

54. spacer 1.28|76478|37|NZ_CP003562|PILER-CR,CRISPRCasFinder,CRT matches to NC_022090 (Staphylococcus phage vB_SauM_Remus, complete genome) position: , mismatch: 10, identity: 0.73

ttgattaagataagttgttaactcttccataaatgga	CRISPR spacer
atgtttaagataagtttttaactcttcatctacttgt	Protospacer
 ** ************ **********  . * * *

55. spacer 1.28|76478|37|NZ_CP003562|PILER-CR,CRISPRCasFinder,CRT matches to MT080588 (UNVERIFIED: Staphylococcus phage vB_SauM_EW22, complete genome) position: , mismatch: 10, identity: 0.73

ttgattaagataagttgttaactcttccataaatgga	CRISPR spacer
atgtttaagataagtttttaactcttcatctacttgt	Protospacer
 ** ************ **********  . * * *

56. spacer 1.28|76478|37|NZ_CP003562|PILER-CR,CRISPRCasFinder,CRT matches to MT080595 (UNVERIFIED: Staphylococcus phage vB_SauM_EW41, partial genome) position: , mismatch: 10, identity: 0.73

ttgattaagataagttgttaactcttccataaatgga	CRISPR spacer
atgtttaagataagtttttaactcttcatctacttgt	Protospacer
 ** ************ **********  . * * *

57. spacer 1.28|76478|37|NZ_CP003562|PILER-CR,CRISPRCasFinder,CRT matches to NC_020877 (Staphylococcus phage vB_SauM_Romulus, complete genome) position: , mismatch: 10, identity: 0.73

ttgattaagataagttgttaactcttccataaatgga	CRISPR spacer
atgtttaagataagtttttaactcttcatctacttgt	Protospacer
 ** ************ **********  . * * *

58. spacer 1.29|76545|35|NZ_CP003562|PILER-CR,CRISPRCasFinder,CRT matches to MN694808 (Marine virus AFVG_250M14, complete genome) position: , mismatch: 10, identity: 0.714

atggaaatgatggaagattcagaagggttattaat	CRISPR spacer
gaaaaagggatggaagatccagaagggttcttatc	Protospacer
. ..**. **********.********** *** .

59. spacer 1.34|76876|32|NZ_CP003562|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP019656 (Paenibacillus larvae subsp. larvae strain Eric_III plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.688

ttctttcttcttttaaaattggttcagccacc	CRISPR spacer
cgtccacttcttttaaaatttgttgagccata	Protospacer
. ... ************** *** *****.

60. spacer 1.34|76876|32|NZ_CP003562|PILER-CR,CRISPRCasFinder,CRT matches to NZ_KU525621 (Bacillus anthracis strain P.NO2 plasmid pXO2, complete sequence) position: , mismatch: 10, identity: 0.688

ttctttcttcttttaaaattggttcagccacc	CRISPR spacer
ttctttcttcttttaaaaatcgtaaaaatctg	Protospacer
****************** * **  *. . .

61. spacer 1.34|76876|32|NZ_CP003562|PILER-CR,CRISPRCasFinder,CRT matches to NC_014332 (Bacillus cereus biovar anthracis str. CI plasmid pCI-XO2, complete sequence) position: , mismatch: 10, identity: 0.688

ttctttcttcttttaaaattggttcagccacc	CRISPR spacer
ttctttcttcttttaaaaatcgtaaaaatctg	Protospacer
****************** * **  *. . .

62. spacer 1.34|76876|32|NZ_CP003562|PILER-CR,CRISPRCasFinder,CRT matches to NC_012577 (Bacillus anthracis str. CDC 684 plasmid pX02, complete sequence) position: , mismatch: 10, identity: 0.688

ttctttcttcttttaaaattggttcagccacc	CRISPR spacer
ttctttcttcttttaaaaatcgtaaaaatctg	Protospacer
****************** * **  *. . .

63. spacer 1.34|76876|32|NZ_CP003562|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP015778 (Bacillus anthracis strain Tangail-1 plasmid pXO2, complete sequence) position: , mismatch: 10, identity: 0.688

ttctttcttcttttaaaattggttcagccacc	CRISPR spacer
ttctttcttcttttaaaaatcgtaaaaatctg	Protospacer
****************** * **  *. . .

64. spacer 1.34|76876|32|NZ_CP003562|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP018905 (Bacillus anthracis strain Tyrol 4675 plasmid pXO2, complete sequence) position: , mismatch: 10, identity: 0.688

ttctttcttcttttaaaattggttcagccacc	CRISPR spacer
ttctttcttcttttaaaaatcgtaaaaatctg	Protospacer
****************** * **  *. . .

65. spacer 1.34|76876|32|NZ_CP003562|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP023003 (Bacillus anthracis strain 14RA5914 plasmid pX02, complete sequence) position: , mismatch: 10, identity: 0.688

ttctttcttcttttaaaattggttcagccacc	CRISPR spacer
ttctttcttcttttaaaaatcgtaaaaatctg	Protospacer
****************** * **  *. . .

66. spacer 1.34|76876|32|NZ_CP003562|PILER-CR,CRISPRCasFinder,CRT matches to NZ_AP019733 (Bacillus anthracis strain PCr plasmid PCr-pXO2) position: , mismatch: 10, identity: 0.688

ttctttcttcttttaaaattggttcagccacc	CRISPR spacer
ttctttcttcttttaaaaatcgtaaaaatctg	Protospacer
****************** * **  *. . .

67. spacer 1.34|76876|32|NZ_CP003562|PILER-CR,CRISPRCasFinder,CRT matches to NZ_AP018445 (Bacillus anthracis strain CZC5 plasmid pXO2, complete sequence) position: , mismatch: 10, identity: 0.688

ttctttcttcttttaaaattggttcagccacc	CRISPR spacer
ttctttcttcttttaaaaatcgtaaaaatctg	Protospacer
****************** * **  *. . .

68. spacer 1.34|76876|32|NZ_CP003562|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP029325 (Bacillus anthracis strain 17OD930 plasmid pXO2, complete sequence) position: , mismatch: 10, identity: 0.688

ttctttcttcttttaaaattggttcagccacc	CRISPR spacer
ttctttcttcttttaaaaatcgtaaaaatctg	Protospacer
****************** * **  *. . .

69. spacer 1.34|76876|32|NZ_CP003562|PILER-CR,CRISPRCasFinder,CRT matches to NC_012655 (Bacillus anthracis str. A0248 plasmid pXO2, complete sequence) position: , mismatch: 10, identity: 0.688

ttctttcttcttttaaaattggttcagccacc	CRISPR spacer
ttctttcttcttttaaaaatcgtaaaaatctg	Protospacer
****************** * **  *. . .

70. spacer 1.34|76876|32|NZ_CP003562|PILER-CR,CRISPRCasFinder,CRT matches to NC_007323 (Bacillus anthracis str. 'Ames Ancestor' plasmid pXO2, complete sequence) position: , mismatch: 10, identity: 0.688

ttctttcttcttttaaaattggttcagccacc	CRISPR spacer
ttctttcttcttttaaaaatcgtaaaaatctg	Protospacer
****************** * **  *. . .

71. spacer 1.34|76876|32|NZ_CP003562|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP010854 (Bacillus anthracis strain A1144 plasmid pXO2, complete sequence) position: , mismatch: 10, identity: 0.688

ttctttcttcttttaaaattggttcagccacc	CRISPR spacer
ttctttcttcttttaaaaatcgtaaaaatctg	Protospacer
****************** * **  *. . .

72. spacer 1.34|76876|32|NZ_CP003562|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP007617 (Bacillus anthracis strain 2000031021 plasmid pXO2, complete sequence) position: , mismatch: 10, identity: 0.688

ttctttcttcttttaaaattggttcagccacc	CRISPR spacer
ttctttcttcttttaaaaatcgtaaaaatctg	Protospacer
****************** * **  *. . .

73. spacer 1.34|76876|32|NZ_CP003562|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP008848 (Bacillus anthracis strain HYU01 plasmid pX02, complete sequence) position: , mismatch: 10, identity: 0.688

ttctttcttcttttaaaattggttcagccacc	CRISPR spacer
ttctttcttcttttaaaaatcgtaaaaatctg	Protospacer
****************** * **  *. . .

74. spacer 1.34|76876|32|NZ_CP003562|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP006744 (Bacillus anthracis str. SVA11 plasmid pXO2, complete sequence) position: , mismatch: 10, identity: 0.688

ttctttcttcttttaaaattggttcagccacc	CRISPR spacer
ttctttcttcttttaaaaatcgtaaaaatctg	Protospacer
****************** * **  *. . .

75. spacer 1.34|76876|32|NZ_CP003562|PILER-CR,CRISPRCasFinder,CRT matches to NZ_AP014835 (Bacillus anthracis strain Shikan-NIID plasmid pXO2) position: , mismatch: 10, identity: 0.688

ttctttcttcttttaaaattggttcagccacc	CRISPR spacer
ttctttcttcttttaaaaatcgtaaaaatctg	Protospacer
****************** * **  *. . .

76. spacer 1.34|76876|32|NZ_CP003562|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP029807 (Bacillus anthracis strain London_499 plasmid pX02, complete sequence) position: , mismatch: 10, identity: 0.688

ttctttcttcttttaaaattggttcagccacc	CRISPR spacer
ttctttcttcttttaaaaatcgtaaaaatctg	Protospacer
****************** * **  *. . .

77. spacer 1.34|76876|32|NZ_CP003562|PILER-CR,CRISPRCasFinder,CRT matches to NC_002146 (Bacillus anthracis plasmid pXO2, complete sequence) position: , mismatch: 10, identity: 0.688

ttctttcttcttttaaaattggttcagccacc	CRISPR spacer
ttctttcttcttttaaaaatcgtaaaaatctg	Protospacer
****************** * **  *. . .

78. spacer 1.34|76876|32|NZ_CP003562|PILER-CR,CRISPRCasFinder,CRT matches to NC_017727 (Bacillus anthracis str. H9401 plasmid BAP2, complete sequence) position: , mismatch: 10, identity: 0.688

ttctttcttcttttaaaattggttcagccacc	CRISPR spacer
ttctttcttcttttaaaaatcgtaaaaatctg	Protospacer
****************** * **  *. . .

79. spacer 1.34|76876|32|NZ_CP003562|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP009314 (Bacillus anthracis str. Turkey32 strain 35 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.688

ttctttcttcttttaaaattggttcagccacc	CRISPR spacer
ttctttcttcttttaaaaatcgtaaaaatctg	Protospacer
****************** * **  *. . .

80. spacer 1.34|76876|32|NZ_CP003562|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP014178 (Bacillus anthracis strain Stendal plasmid pXO2, complete sequence) position: , mismatch: 10, identity: 0.688

ttctttcttcttttaaaattggttcagccacc	CRISPR spacer
ttctttcttcttttaaaaatcgtaaaaatctg	Protospacer
****************** * **  *. . .

81. spacer 1.34|76876|32|NZ_CP003562|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP009475 (Bacillus anthracis strain Pasteur plasmid pXO2, complete sequence) position: , mismatch: 10, identity: 0.688

ttctttcttcttttaaaattggttcagccacc	CRISPR spacer
ttctttcttcttttaaaaatcgtaaaaatctg	Protospacer
****************** * **  *. . .

82. spacer 1.34|76876|32|NZ_CP003562|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP009900 (Bacillus anthracis strain 2002013094 plasmid pXO2, complete sequence) position: , mismatch: 10, identity: 0.688

ttctttcttcttttaaaattggttcagccacc	CRISPR spacer
ttctttcttcttttaaaaatcgtaaaaatctg	Protospacer
****************** * **  *. . .

83. spacer 1.34|76876|32|NZ_CP003562|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP009339 (Bacillus anthracis strain Ohio ACB plasmid 2, complete sequence) position: , mismatch: 10, identity: 0.688

ttctttcttcttttaaaattggttcagccacc	CRISPR spacer
ttctttcttcttttaaaaatcgtaaaaatctg	Protospacer
****************** * **  *. . .

84. spacer 1.34|76876|32|NZ_CP003562|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP009695 (Bacillus anthracis strain RA3 plasmid pXO2, complete sequence) position: , mismatch: 10, identity: 0.688

ttctttcttcttttaaaattggttcagccacc	CRISPR spacer
ttctttcttcttttaaaaatcgtaaaaatctg	Protospacer
****************** * **  *. . .

85. spacer 1.34|76876|32|NZ_CP003562|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP009462 (Bacillus anthracis strain SK-102 plasmid pXO2, complete sequence) position: , mismatch: 10, identity: 0.688

ttctttcttcttttaaaattggttcagccacc	CRISPR spacer
ttctttcttcttttaaaaatcgtaaaaatctg	Protospacer
****************** * **  *. . .

86. spacer 1.34|76876|32|NZ_CP003562|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP009698 (Bacillus anthracis strain BA1035 plasmid pXO2, complete sequence) position: , mismatch: 10, identity: 0.688

ttctttcttcttttaaaattggttcagccacc	CRISPR spacer
ttctttcttcttttaaaaatcgtaaaaatctg	Protospacer
****************** * **  *. . .

87. spacer 1.34|76876|32|NZ_CP003562|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP009542 (Bacillus anthracis strain BA1015 plasmid pXO2, complete sequence) position: , mismatch: 10, identity: 0.688

ttctttcttcttttaaaattggttcagccacc	CRISPR spacer
ttctttcttcttttaaaaatcgtaaaaatctg	Protospacer
****************** * **  *. . .

88. spacer 1.34|76876|32|NZ_CP003562|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP010320 (Bacillus anthracis strain Canadian Bison isolate A0369 plasmid 2, complete sequence) position: , mismatch: 10, identity: 0.688

ttctttcttcttttaaaattggttcagccacc	CRISPR spacer
ttctttcttcttttaaaaatcgtaaaaatctg	Protospacer
****************** * **  *. . .

89. spacer 1.34|76876|32|NZ_CP003562|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP009329 (Bacillus anthracis strain K3 plasmid 2, complete sequence) position: , mismatch: 10, identity: 0.688

ttctttcttcttttaaaattggttcagccacc	CRISPR spacer
ttctttcttcttttaaaaatcgtaaaaatctg	Protospacer
****************** * **  *. . .

90. spacer 1.34|76876|32|NZ_CP003562|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP009326 (Bacillus anthracis strain Vollum 1B plasmid 2, complete sequence) position: , mismatch: 10, identity: 0.688

ttctttcttcttttaaaattggttcagccacc	CRISPR spacer
ttctttcttcttttaaaaatcgtaaaaatctg	Protospacer
****************** * **  *. . .

91. spacer 1.34|76876|32|NZ_CP003562|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP009979 (Bacillus anthracis strain Ames isolate BACI008 plasmid unnamed2, complete sequence) position: , mismatch: 10, identity: 0.688

ttctttcttcttttaaaattggttcagccacc	CRISPR spacer
ttctttcttcttttaaaaatcgtaaaaatctg	Protospacer
****************** * **  *. . .

92. spacer 1.34|76876|32|NZ_CP003562|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP001972 (Bacillus anthracis str. A16 plasmid pXO2, complete sequence) position: , mismatch: 10, identity: 0.688

ttctttcttcttttaaaattggttcagccacc	CRISPR spacer
ttctttcttcttttaaaaatcgtaaaaatctg	Protospacer
****************** * **  *. . .

93. spacer 1.34|76876|32|NZ_CP003562|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP047133 (Bacillus anthracis str. BF1 plasmid pXO2, complete sequence) position: , mismatch: 10, identity: 0.688

ttctttcttcttttaaaattggttcagccacc	CRISPR spacer
ttctttcttcttttaaaaatcgtaaaaatctg	Protospacer
****************** * **  *. . .

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP003560

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP003560_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP003560_1

835802-835973

Orphan

Consensus_repeat	Method
CCGACCCGAATACCTCAAAAACCGA	CRISPRCasFinder

3 spacers

The CRISPR arrays of NZ_CP003560_1

>merge|NZ_CP003560|1|835802-835973|CRISPRCasFinder
CCGACCCGAATTGTACAAAAAGGCAATGAAATAGGACAAAAACCGACCCGAATACCTCAAAAACCGAGGCGAATTGGATGAATCTAAGACGTTATTGGACGTCGACCGACCCGAATACCATGAATTCCGACCCGAATACCCCAAAAACCGACTCGAATTGGACAAAAAGGCA

>NZ_CP003560|1|1|835802-835973|CRISPRCasFinder
CCGACCCGAATTGTACAAAAAGGCA	ATGAAATAGGACAAAAA
CCGACCCGAATACCTCAAAAACCGA	GGCGAATTGGATGAATCTAAGACGTTATTGGACGTCGA
CCGACCCGAATACCATGAATTCCGA	CCCGAATACCCCAAAAA
CCGACTCGAATTGGACAAAAAGGCA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP003560.2\|WP_066206296.1\|839565_839997_+\|DNA-mismatch-endonuclease-Vsr	unknown	unknown	gnl\|CDD\|226250
NZ_CP003560.2\|WP_066206306.1\|843317_844475_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP003560.2\|WP_158297541.1\|847704_849342_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP003560.2\|WP_066206299.1\|840015_840741_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP003560.2\|WP_066206259.1\|815660_815915_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP003560.2\|WP_084005751.1\|836885_838385_+\|DNA-(cytosine-5-)-methyltransferase	unknown	unknown	gnl\|CDD\|273211
NZ_CP003560.2\|WP_066206308.1\|844605_846192_-\|BCCT-family-transporter	unknown	unknown	gnl\|CDD\|376718
NZ_CP003560.2\|WP_066206267.1\|820564_821953_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP003560.2\|WP_066206294.1\|838456_839548_+\|HNH-endonuclease	unknown	unknown	gnl\|CDD\|379157
NZ_CP003560.2\|WP_066206287.1\|831658_834661_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP003560.2\|WP_066206262.1\|816677_817490_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP003560.2\|WP_066206301.1\|840827_841892_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379160
NZ_CP003560.2\|WP_084005750.1\|822035_823160_+\|phosphatidylserine/phosphatidylglycerophosphate/-cardiolipin-synthase-family-protein	unknown	unknown	gnl\|CDD\|224419
NZ_CP003560.2\|WP_066206275.1\|823795_825466_+\|T9SS-type-A-sorting-domain-containing-protein	unknown	unknown	gnl\|CDD\|275036
NZ_CP003560.2\|WP_066206265.1\|817746_820533_+\|TonB-dependent-receptor	unknown	unknown	gnl\|CDD\|273804
NZ_CP003560.2\|WP_066206278.1\|826261_830131_+\|T9SS-type-A-sorting-domain-containing-protein	unknown	unknown	gnl\|CDD\|275036
NZ_CP003560.2\|WP_066206292.1\|835060_835714_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP003560.2\|WP_066206281.1\|830681_831089_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP003560.2\|WP_158297539.1\|841964_843098_+\|methyltransferase-domain-containing-protein	unknown	unknown	gnl\|CDD\|274979
NZ_CP003560.2\|WP_066206310.1\|846476_847619_-\|acyltransferase	unknown	unknown	gnl\|CDD\|224748

Protein	Function_ID	Function_description	E-value
NZ_CP003560.2\|WP_066206296.1\|839565_839997_+\|DNA-mismatch-endonuclease-Vsr	gnl\|CDD\|226250	COG3727, Vsr, DNA G:T-mismatch repair endonuclease [DNA replication, recombination, and repair].	8.13532e-51
NZ_CP003560.2\|WP_066206310.1\|846476_847619_-\|acyltransferase	gnl\|CDD\|224748	COG1835, COG1835, Predicted acyltransferases [Lipid metabolism].	8.8999e-33
NZ_CP003560.2\|WP_066206301.1\|840827_841892_+\|hypothetical-protein	gnl\|CDD\|379160	pfam13395, HNH_4, HNH endonuclease. This HNH nuclease domain is found in CRISPR-related proteins.	0.00137245
NZ_CP003560.2\|WP_158297539.1\|841964_843098_+\|methyltransferase-domain-containing-protein	gnl\|CDD\|274979	TIGR04096, conserved_hypothetical_protein, DNA phosphorothioation-associated putative methyltransferase. Members of this protein family show distant local sequence similarity to a number of S-adenosyl-methionine-dependent methyltransferases. The family is identified by Partial Phylogenetic Profiling as closely tied to the DNA phosphorothioation system (dnd), and members are found adjacent to dnd genes in at least 13 species (Streptomyces lividans TK24, Shewanella frigidimarina NCIMB 400, Mycobacterium abscessus ATCC 19977, Nostoc punctiforme PCC 73102, Vibrio fischeri MJ11, etc.). The DNA phosphorothioation enables a novel form of restriction enzyme activity. Most members of this family appear in species with the DNA phosphorothioation system. [DNA metabolism, Restriction/modification].	2.26135e-12
NZ_CP003560.2\|WP_066206275.1\|823795_825466_+\|T9SS-type-A-sorting-domain-containing-protein	gnl\|CDD\|275036	TIGR04183, hypothetical_protein, Por secretion system C-terminal sorting domain. Species that include Porphyromonas gingivalis, Fibrobacter succinogenes, Flavobacterium johnsoniae, Cytophaga hutchinsonii, Gramella forsetii, Prevotella intermedia, and Salinibacter ruber average twenty or more copies of a C-terminal domain, represented by this model, associated with sorting to the outer membrane and covalent modification.	0.000650566
NZ_CP003560.2\|WP_084005751.1\|836885_838385_+\|DNA-(cytosine-5-)-methyltransferase	gnl\|CDD\|273211	TIGR00675, Modification_methylase, DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair].	4.27591e-92
NZ_CP003560.2\|WP_066206308.1\|844605_846192_-\|BCCT-family-transporter	gnl\|CDD\|376718	pfam02028, BCCT, BCCT, betaine/carnitine/choline family transporter.	0
NZ_CP003560.2\|WP_066206278.1\|826261_830131_+\|T9SS-type-A-sorting-domain-containing-protein	gnl\|CDD\|275036	TIGR04183, hypothetical_protein, Por secretion system C-terminal sorting domain. Species that include Porphyromonas gingivalis, Fibrobacter succinogenes, Flavobacterium johnsoniae, Cytophaga hutchinsonii, Gramella forsetii, Prevotella intermedia, and Salinibacter ruber average twenty or more copies of a C-terminal domain, represented by this model, associated with sorting to the outer membrane and covalent modification.	2.41103e-08
NZ_CP003560.2\|WP_066206265.1\|817746_820533_+\|TonB-dependent-receptor	gnl\|CDD\|273804	TIGR01782, TonB-dependent_receptor, TonB-dependent receptor. This model represents a family of TonB-dependent outer-membrane receptors which are found mainly in Xanthomonas and Caulobacter. These appear to represent the expansion of a paralogous family in that the 22 X. axonopodis (21 in X. campestris) and 18 C. crescentus sequences are more closely related to each other than any of the many TonB-dependent receptors found in other species. In fact, the Crescentus and Xanthomonas sequences are inseparable on a phylogenetic tree using a PAM-weighted neighbor-joining method, indicating that one of the two genuses may have acquired this set of receptors from the other. The mechanism by which this family is shared between Xanthomonas, a gamma proteobacterial plant pathogen and Caulobacter, an alpha proteobacterial aquatic organism is unclear. [Transport and binding proteins, Porins].	3.10755e-73
NZ_CP003560.2\|WP_066206294.1\|838456_839548_+\|HNH-endonuclease	gnl\|CDD\|379157	pfam13391, HNH_2, HNH endonuclease.	8.66831e-10
NZ_CP003560.2\|WP_084005750.1\|822035_823160_+\|phosphatidylserine/phosphatidylglycerophosphate/-cardiolipin-synthase-family-protein	gnl\|CDD\|224419	COG1502, Cls, Phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthases and related enzymes [Lipid metabolism].	2.81659e-08

>NZ_CP003560.2|WP_066206292.1|835060_835714_-|hypothetical-protein
MQLSKLSEAQLLDRAQIIYTNAVTVESIRKELELSGYDAKKIEEGKTFFEEASSIKKENDQKDLEVKQLSEEYKMKSTQLSDTYKAHRDALKRMFKNEATTYKALGLDVAMKTKSIDFINETDKLYSALLANEDVLEKIKMIRLNADIINETKTLINEVALLRSRVFQLKAEAQNLTQTKKEKINSLKEKMNEIILVAEMALKGQDQMLEAFGVVVR
>NZ_CP003560.2|WP_066206287.1|831658_834661_+|hypothetical-protein
MDKLITILFSLLLITTTNADNRYWIGSGTSTWNDVNNWSDVSGGSGGFSVPSALDDIFFDNKGLADVILDANYEVSSVSIDANYTGTIDFNGFTLTVSGAGDTQILGGTLDNGSLVVNDADRDLLFRNTSINVDVVASSGKIYYSSTTFGETVSFTLTGVPVNPHSNGSSTFKKNATFIHNSSGYWEIASNQTNLFEGDVRIENNGSGTIMLVKVGTTTIKGDLTYLSTTSGAVSSSLLSVNNIDAKFTIEGNVILETQSSADDELIKFPVNGQITIDQNLTVRNSATSDQSLIYLSGNAKSKITVNGNLLIENDGLTGTKKEVRFPDKGEAFVFGTSDIRNTSTANQNLIVLGKSGDATFHQAVSITNNAVNTKSEVVVAESGQFIFNGDVHLINNASANSSWIEVSKNSGTTVAFNGNVILENTSTSSDYIRFGAQGGTSTLADTKVIQIKDNDPNNYQTDLTINNLTQNGTTAQQLSISNALLTVAASTFNGNITLEAPEILISDNHFYGETSITQSGSNNQNSAGNNQFYENTSIINSGTGIFRTGNNNGNIYHKDVTYQTTSTGTIEETSVSKTEYKGDVYLNTTSVVELARGVSGVVEFNGTSNQSIIDLSGSSSARISSLIVNTDGELTVSVPTIVRYQIDFTKGLVNTDIFNTLELSNGGVIANVSATSHVVGPFTKVGLDAFTFPLGDATALHPIGISAPPTSNSRFTAEYYSGSSGLEDKELGIENVSTCEYWKLTNTQSHAVHVDITWDGCSDIGDYTTLGVGRYVSGEWVNYGNAELSGDEAAQRVTSSLTLSNLEDGENYITFVTADPSNDLPVELIDFRASKENNSVKLSWSTATEINNDRFILSKSTDRRNWQEIGEVKGAGNSQTLLHYKFFDDAPTTETVFYQLKQIDFDGTEEIFPSIRLQSNDNDIYLYAYPNPFQHQLTIESNDIDSFQLFDMMGREVTESVVEISSSENKITFDAALLENGVFVFKTRLGKAVRVVKNR
>NZ_CP003560.2|WP_066206281.1|830681_831089_-|hypothetical-protein
MKLIQLFALLLFVGLGVSSQAQTRFKISEMEAYPRLTEIEKAHFAGLEVDAIVNKDNIELSFMTGGDDKNPFINTYDFREKIQGEKIYTENTSDGHVMVMITYKKGLFEKDELTMRQFSPNGDCIGSFVFKEERN
>NZ_CP003560.2|WP_066206278.1|826261_830131_+|T9SS-type-A-sorting-domain-containing-protein
MNFKSIVLVISCIVFFNHVNAQTTSEKPEGEGTAISPYEIKTLSHLRWMSEDFYFFQPYEGHFVLKADIDASETKTWNDGKGFKPVEKVSSFDGLNYSISNLFINRPDENDVGFIGRYIVEHVRNLQLINVDITGNVYVGGAAGSNNLTQMSNIFVSGKVTGTNHVGGIIGDVSEFQSSALINAAQVNGDEYVGGIVGRIAYLHNVGSKKLQVFHINDKNYGDVSGNDFVGPFVGHIDQVRNKDFKILYFFNSGKITNNGSENDFLQQELDQVFDESYNDSQSSGFTSTVKGVTNLTTEQLGNSSNYSSNFLENNQLTTVSEISTTTQPYSNEYFKPFKFEFQNDFDKGVLLSVEGFKNYGLNEEMKAKLNFGSGIQFKRLIIDGETFETNEISITAKKGQNTMIIVDFEYNPVFSGGKGTSDDPYQITDINQLQQIAFNKNLQKDTYFIINNDIDADNLNNKDEGFIPIENLKFLDGQGHTIHNLILKKGGVVKFNYGLIRNLKLKNAEGNINTDGPYVGILTDFNSGVIDNVHIEGNLETTRTNAGLIAGYFQYGNVKNCSVEGMVTAHNYVGGLIGNAYRTIIENCVTNVKVKGENYVGGSIGYSYNSTLSNLISYGSIESTLTEGKINAAGITTTNQNNTAEESYFDNTKIGMELNQLNDQEKGKETSFFGDENNFLNFDLENIWHIKSGVYNETDELLSLQSATAEHYIAVNILQGDNLVTNLTKSKGYKIGDTVNLSVELIIGYKLDYWLVNGERFSSENPLSITIDETTANVFNAVLIEDYEVFDEGDGSTTNPYQISTFEQLVAFSNIEALTYSSFVLTNDIDASASKTIDDGKGFNPRAEFGGEFNGQGYTISDLQIHRDMLTAGLVQHLKNSGRMENIHLKNISFKGDIMNLGGIAGTTNINVHIYGCSVTGELTSISSNTSYIGGLVGSTGSSQLSYNRTNVSISGGSYCGGLAASIHNMQINNSYASGRINTEDDTNKKAFIGIEKGFNEFSNNYYDSDNAGVSSGGGNAVGLTRDQFADKTNFPNWDFDNLFIIEDDIDSQFEFRPVIREQYVTISTDEKELIIRPIVGRYYKNVPTGMKVKTVPYRIMNSLSINDNEIDFDGTIYTAWQKFDENYHISADISWVKYQVSTEVNGDGSIEPMNPEVDHGSSQLFTFTPVNGGEILDVLIDGESIGTVDEYLMEDIIDRSSIKVIFSTVTSLETNLNKIQVYPNPSNNTVYIKTKTLGASAQLINLQGQLLKEFEIENFKQSVDISSLQKGIYLLKIGSETYKIIKE
>NZ_CP003560.2|WP_066206275.1|823795_825466_+|T9SS-type-A-sorting-domain-containing-protein
MKHLLLVATLILCGQFSFAQDYSKDVTFTANNVINATQTTNAATSDITYLADGGSYNLEIKDNSTFTIDLQSTYTLFTRGSGDPDDNTNAVELVIDEGSMLIIDGNLDVGAHTDIVLNGNMIITGDLLNSDRLTNGGYGDIDINGNGLIYIGGQANLDFVDPANAKNIFIEESYETPNDGSRLSDAERALLDRNLGSNPFSTDDGLNVDQHNYDLNLWEGAQIDPTDQGNGELTTEPFTAIKVETASGWYNQYIKLRGEGFDDGELSSSSIYFNSKITSLDELEDILQKIKWSVKNATVNDNVLLHHGGSDRDGFTDPIKTEITDYFADTRKIIVSFVDGASEIEYIASSGKMMAATVEEIIINTDDGDLPVELIFFNGIKNEDQTVTLNWATATEINNEKFDIYRSTDKIKWEKIGTVASQAGNSNYRIDYKFIDSDPSTKNYYKLVQVDYDGSSETFGPIQVISENTGILSVEVFPNPLANQQKGQLHIKGMSINTPTQVSIYTKYGKMIDTFNINEQNQTSYIQPLEYNLPSGMYFIRVVNGVEVANAKLLLK
>NZ_CP003560.2|WP_084005750.1|822035_823160_+|phosphatidylserine/phosphatidylglycerophosphate/-cardiolipin-synthase-family-protein
MRYAHADMRHKYIFFGLMFFLVIACDTTTNDEIVYVPEGPVFDTQFPITVLPTAEELQSDNTLFLQPIQAIIDATPSGEDLYINIFKFSQGTLRENILAAQRRGVKVHMILDSDEVNNYTAKVFQDSLTTFLRYNNYLDSKAINHNKYVLSSAISTSDSLRRNIVLSTSYNFTASDNSKYQDMLLVDNEFVYESFLHNFHQMIEVEEEQTLQHWNFLWVDNSEYKVGFLPKTSGADIIMDIFEETSSTAEVIIMNSKWEDDRPQLVSTLQRLLDQGTDLTIIAPPSRTDNLDKNWENRLIEWDQTYENFTIKWISSPSIHNKTIYINDGENSCVWTGAHNFRARSLRFNNESMLRVRDVEVVEAYQKWLYEMKN
>NZ_CP003560.2|WP_066206267.1|820564_821953_+|hypothetical-protein
MKNLNNFLVKGVFFLSTLFFMFSCTANEEDLLGSDDDDTETPETPGGEEEEAEDISITSTYVISEDETWESGITVNWGGHVVIEEGVTLTIEPGVKVLADKTAAPEFYIKGNLHALGTADKPIYVTVPEADRTEANIFNLQAWGGFICTSTAKTFVMDHVVMEFGNATLTDDHISIQEGVVDMEVGEPSYGFYSENPETKVIVHNSVIAYMSDDAFRPQGGQVSFYNNVFAYIGSTGGEALNIKKGTTGDIAYNLFYHIATNGPKWSNKSGVDVQTNINAYNNTIVSGGWRRNKSGRGGSVNIEETARGMIVNNMIVNCRYGVRVVGDAVEGTNVDMENTTIDNQYYYGNHARMTSEFAPSNGFLTEIAENSIAGNDPMFENYDVVNEFTISLTTEDDEFPTPNEDKTFDEWSKYDFHLKSGSPALNAGSVNVEPMYGSITVAGKTYTVPRSADYIGAFGTK
>NZ_CP003560.2|WP_066206265.1|817746_820533_+|TonB-dependent-receptor
MYKTLLLSIIFYLTYNSSLLGQTIKGTITDESGEALIGASVVIEGTTNGAMVGLNGMYLIKGGQQGSQITLMASFIGFETQRKTIQLNGNAEVNFVLKTDQQELDEVVIMAQRELDSDASARATEQHSAMVLNVVSANTIELSPDLNVADVVQRISGVSLEQSNAGVGSYAIVRGMPKRYSYTLVNGVKIPSPDNKNRYVPLDMFPSELLDRIEVTKALTPSMEGDAVGGVMDLIMKNAKDNFSFKVNASGGMSSLFMEGSGQDFLTYNQSLTNRVAPHHRAVEGYEATFKDFTTNNLVPSKKTNPIDFNIGTSISNRFFDGKLGVVVAGNYQKLHRGSDTHFYSIGFADIVNNVMSLNTYQHRQYSSEMSRGGVHNKIDYIFNNKHSISMYNALIFEREDQVRETERFRLWDGEYNPETNSGTASLITRIRTTEQKIYNSTLQGNHQLLPNWKLNWSGVYSIATRNRPDQMVFTRNASYVNGVPKQVRVEDFGGQYRQWEDNEDRDYTAYLNNIFDLNRFGELKVGGMYRDKARTNSYIRYNFKPLNDETKVDEDWYYNQVDWVLTNPRGGQTNPLNYDAHERILAYYGEYKIAPSKNTEIVGGVRAEHTDQGYELRYPRYGEEPSATQEYVDFLPSLHFRYMLNEKSNLRASYFRSVIRPGFFEIIPYEIGAEISDSEFAERGNPDLKRTITDNFDLRYEMFPGTRDNLFIGAFYKNIMDPIENGIVVDEKGNTFVQPGNYGTAVNYGLEVDATKYFRSFGIKANYTYTHSSITTTKILYTRENPEDNSSNIVPLQVDQERPLQGQARHIGNVSLLYKNQKNGLDIQLANVFTGKRIEQLMVYYEKDYWQKAMWQMDFSMEKHFDFGLTVFVKARNLLDTHRILYIEEPSTENQSKYPAQGAPGDNLVVRDDRYGRNFQIGLKYKL
>NZ_CP003560.2|WP_066206262.1|816677_817490_-|hypothetical-protein
MKTTLLFLFTFFPLFIFSQGKIDQVRKNIKKQDTKTYSKSSSSSTSHSSNSNSNNNFSVLGTLVMGIVDAIPSERELTQMYGAPLRLQKYPYYMEGGGKFSRYPEAKTSFTTEFEMNYVTEMQNLQSGNMKLRLNFAPKFSISGKGNYYQEKINENTYDHMGTLHLNASYHLLAYTGIDAWIGIGYSHLFLDDGYSGVNMNLGTELYLFKPVGLYTEWYFSGLSDDVDMREGTIGLKWYMKSFYVQGGYNSLRIVGVDFSGVMFGVGVVM
>NZ_CP003560.2|WP_066206259.1|815660_815915_+|hypothetical-protein
MMITCKKASELIDKEAEVGISFKEKLQLSFHTFICKACKQYRVMSDQLGNTLQKFIGKSHEDATLSEAKKEEILKNLKKNDDEV
>NZ_CP003560.2|WP_084005751.1|836885_838385_+|DNA-(cytosine-5-)-methyltransferase
MEDLFGNYIKNKRIEMGLPLREVATTLKIDISTLGKIERGERCISKNLIPILAKVLSIDESIMINNYLSSKVINLLEDYPDYNTVLDISKEELKNILNDGENQLEFTFENKESWVDKEVSFPDAKIKVATLFSGIGAIEYALRRLKIDTEIVFASDIDKFVKQSYFANYQISEENWYNDVQDVDGTKYKGKIDLLVGGSPCQSFSMVGKRKGFEDTRGTLFYEFARIVKETQPKVFIFENVKGLINHDKGNTFETIKATFNELGYKYYYQVLNAKNYGIPQHRERIFVVGFKDKKAVFKFPTSIKLEYKMQDFLEDYTDSKYYLKEKGVKFVTSTKNRKKRYTQINGEIALCQKANQQFNWHGDFIFEDKENQEYDEFIFNVNEVEEKYYLSDKVKNYVLSTGTKNFKTNIKTDLEVARPLLQSMHKMHRAGVDNYVTHNKGRIRKLTPTECLRLMGFRDDFKQVVSDTQLYRQAGNSIVVDVLIAILKEIDITTIAKK
>NZ_CP003560.2|WP_066206294.1|838456_839548_+|HNH-endonuclease
MADAICRWRNPYINNVRILIDILPKVELTIDEARTIVNDSSTNHFRASFYRTPYQLACQLGLYHETDGHYFPKFRSSPSQEELEKYLKNWIIHYTVPNPYTSSLPSSLTPFSIHAEICRMLAENGSNILWDETINELFGFEIGNKDILKNSFIHSPILKINNDIIGLKTGFDYDQLSEFINVDINRDSENKEYFFDLFNVENSFSSHNPNDLIQNITEEEKQVLNELEVSDEFSQTEKLQIVKARIGQGVFRRSLIEEIPFCPITSVNDVNLLIASHIKPWSTSNNIERIDHKNGFLFTPTYDKLFDKGYISFREDKRLIISPHLSLENSNRLSLQQNMMVNHLPIEGREEYLTFHRDVIFKF
>NZ_CP003560.2|WP_066206296.1|839565_839997_+|DNA-mismatch-endonuclease-Vsr
MCTLNESQRSYNMSQIKSKDTKPEIILRRYLHGQGIRFRLHGKYKKEILPGKPDVVLAKYKSVINVNGCFWHGHKGCKYYRLPKTNVDFWKWKISRNKANDILNTHKLNEKGWNVITIWECDLKDKREETLKNLLLLLSEIKP
>NZ_CP003560.2|WP_066206299.1|840015_840741_+|hypothetical-protein
MKNLLQLFTTSINSISTKSNVPFINPTEIYNEGWMTRFLVHYSMQENLNIEGLIDFGKIKNATSEGLISSPFINVDKNREGYTHADMAMGDFKIDYETRGEIKVEDGASIFGIIEAKMKSNLSKGTTNASNYNQASRNIACIAHNCQHPEIENFFIVTAPEAMVIHHKIKDQLDKEVIKSQIRNRFQISEVKEDTILLDRVDRCNIRILTYEDWIDQFEEGDLKEELNGFYNECLKWNRLN
>NZ_CP003560.2|WP_066206301.1|840827_841892_+|hypothetical-protein
MKNRFQNTFTKVTNSYKFYWCLSLINCSNEFYNGKIKFEDLAIEIICLVWYPINYFRLNFGKTDQYEKIILEIKQIYGLADDIKEKDLKAFLKSRSNDNEMKEFIHLICTYVPYRFLSPWFDFRGVKDHHRHKHILENQYRATDLPYTIDIVNKEITLSESFKNWITTDRVFIENYTLFHLLQYLQQRNPNVPGIINKLFKPQTRNLTTQTKIWKEFIIDYPTKKTIFSNVELSLIHDLSVDHYLPWSFVTHDQIWNLHPIEKSVNSAKNNILPSDGYNIPFISMQYDLTRFLLHKKKQNKVLEDYYTVFSLSQEDLLNIDLDNFISIYKKVYNPLFEIAMNMGFQKDWRYIKK
>NZ_CP003560.2|WP_158297539.1|841964_843098_+|methyltransferase-domain-containing-protein
MNKTITHYPELTAIQRDKMSYPTRILMQRGRLNKDILDFGCGHGRDTLELQKSGYCVDKYDKYHHPQFPQKKYDTILCHYVLNVLEKADQSKVLAEVSLLLKQGGKAYFTVRRDVFRPGVRIHKYHQKPTYQCNVVLPFTSFLRTEHCEIYEYTKPSDSWLIAETISVAAIWKNNKVQYQKKEAVNARTDKAIALLKEVLGEERSQCFIPKQNTNLYERKNSLRLRKYDYAQEGVYFITINVYQFKSVFGRIINGEMHLNPLGEMVKREWLNSDNIRDNIKLEAFIIMPNHFHGIIIIKHPARKLSLEDRKSLSPSEDIPAIIRGFKGATTKQAWAMGYDKNKSLWQRNFYDIIIRDQDHLKNTIAYINNNPSNYKK
>NZ_CP003560.2|WP_066206306.1|843317_844475_-|hypothetical-protein
MKKYLLLSFLFLLSTPLFSQDKPEFHFGGALRFNYNYSTWKEGHQQRGGDFGYDMFSLQPTLKYKGIGLKTDIRIYSEAFGGYFMKFGWFDYNFTDENQIQLGLTQVPFGITTFNSHNWFFSLNYYLGLEDDHDMGGKFTHSGEGWEYSIAFFKNAEELSFGSYSDASNSRYSYDVGSIDENGDGTLQYRNKETNQFNVNLLKKLKTGEMAHKLGISGMFGGLYNLDTEKMGKHYAAALHYEFDIKKWNLKAQASYYKKDAHAPDGERKDVVALTAYGAPYLVAAEAMTYTLGVSFTQPVEWGPVSSLMFYNDFGYMDKTEESFYDSYQNVTGCMITAGPMYIYVDGALGKNQPWLGPNYNTALAYGDEDADWHLRFNINFGLYF
>NZ_CP003560.2|WP_066206308.1|844605_846192_-|BCCT-family-transporter
MSRHVRSDQKTFMGIKANATVSLTSIFIIFVLVVSTLVVGEPMEKWFKETQNAVANNVGWLFILLLNCMLFFALFLGFSKFGKIKIGGQGAEPEFSQTAWFAMLFSAGMGIGLLFWSVAEPIFHFNSNPFMKDGGSPAVAAEKAMGITFLHWGVHAWALYAVVGLALAFFTFNLKLPLTIRSIFFPLLGKRIYGLMGDIIDIIAVIATLFGLATSLGFGVQQVNAGLTYLFGIETSNSVELILIVIITGFATLSLVLGLDKGIRMLSEWNIRLALGLMLLVLCIGPTLFILKSFVQNIGYYIYEFFELSFWTNSYKGVASEKNWQNSWTVFYWAWWISWSPFVGIFIARISKGRTIKEFVLGVLIVPALLTFLWLTVFGGSALYQELIGNHSITEAVNKNVATAIFYLLEQYPFTTFSSILTIILVTSFFVTSSDSGSFVVDTLTSGGRHDAPVGQKIFWASMEGLIAGVLLMGGGLAALQTASILTGLPFAILIIIMCFSFYKALSDYYDEHFKSHREVHRREKKKK
>NZ_CP003560.2|WP_066206310.1|846476_847619_-|acyltransferase
MITLVVRQQDIKVNMKPTNYLTSLTPLRGIAALWVIIFHIDVSTYYRDLGSLFDRSSTGIFSKGYLWVDFFFLLSGFIIYHVYGQEFKEGFSFPKMKRFLWTRFSRLYPLHLFTLMVTIIGALIFGQLYPQLIDGSWELYFSPKALLPEFTMMNAMNFYHFLSWNMPSWSIGAEFWTYFIAIFILGALGKQTKVGWIISSVLSFSLLVMLVHFHPNHNLDITWDFGWLRCLFQFILGVNIYQLFDKKIGASFLSKDIIFIVLMMSIGIGFHFMWNDLIFVPLFALLLLATAYNNNKVSSFLESPSLKFLGDISYSLYLMHGLVFFFFWFQFPIWKEQFGWETLPKWMHLLYMITFIGITILISAWSYKYVEVKGRKWLRK
>NZ_CP003560.2|WP_158297541.1|847704_849342_+|hypothetical-protein
MKRLLYLVLLLLVGLTANAQTPIGLQFDLYGQPIHGYYDPLSFSSSASVSKNLGEFLPGKVYDKEGNPRKTLTKFSVAKISKKSADGISEAVYPSRYSAVTVGQDSFFVAQNIHFRGRTRNRESFVQYIAEFDSTVFAKVYNMNFNGSVMHQTYIAKKYDEETWEEINPNKKSIEPMIEHFFSKYDNVITQGKTMETGAVNYFAFLGFEYEKNLELNDQSIAGLINIAKITSKFSKDEKTYLNKFFIETRDTSKAKYYTKIKGIYQDYYTKQYFNLYDELMYEVDFKNTKMNELHGNYTMYYNGKLALKKTIEDGEVKKGEVYKDGLLVYSYTNEKVKPEYGSEYTECVFNFGQGDQKTGTFDFYDPFDNLKKFITLDNGVPTSITFNDHGELKSYFVQSGNPFKLKKINRLFQSHIKDQFFVFHDVYKPLLVRMKIDTEGYVKEYQLLNEVNDKFDVKVDEFIKAHVLNGGGKKLRLRPKDKKIDSPLVVIVPFELLIGGQFWFINNNADWMMHQQMMWHNNFMHQQMMHQQNLHHIQTMAPTF

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Crispr_ID: NZ_CP003560_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP003560_2

1623332-1623482

Orphan

Consensus_repeat	Method
TTGGGCGGATGATGGGATTCGAACCCACGGCCCCTGGAACCACAAACC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP003560_2

>merge|NZ_CP003560|2|1623332-1623482|CRISPRCasFinder
TTGGGCGGATGATGGGATTCGAACCCACGGCCCCTGGAACCACAAACCAGTGCTCTAACCAACTGAGCTACAACCGCCATAATTATATAACGAAAAACAAAACTTGGGCGGATGATGGGATTCGAACCCACGGCCCCCGGAACCACAAACC

>NZ_CP003560|2|2|1623332-1623482|CRISPRCasFinder
TTGGGCGGATGATGGGATTCGAACCCACGGCCCCTGGAACCACAAACC	AGTGCTCTAACCAACTGAGCTACAACCGCCATAATTATATAACGAAAAACAAAAC
TTGGGCGGATGATGGGATTCGAACCCACGGCCCCCGGAACCACAAACC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP003560.2\|WP_084005794.1\|1633061_1634141_-\|imelysin-family-protein	unknown	unknown	gnl\|CDD\|271142
NZ_CP003560.2\|WP_066207880.1\|1637838_1638381_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP003560.2\|WP_066207869.1\|1631722_1633072_-\|HTTM-domain-containing-protein	unknown	unknown	gnl\|CDD\|377454
NZ_CP003560.2\|WP_066207854.1\|1612399_1614136_-\|SusD/RagB-family-nutrient-binding-outer-membrane-lipoprotein	unknown	unknown	gnl\|CDD\|378943
NZ_CP003560.2\|WP_066207846.1\|1607795_1609064_-\|aspartate-kinase	unknown	unknown	gnl\|CDD\|239776
NZ_CP003560.2\|WP_066207844.1\|1607247_1607667_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP003560.2\|WP_158297601.1\|1634235_1635294_-\|DUF4856-domain-containing-protein	unknown	unknown	gnl\|CDD\|374396
NZ_CP003560.2\|WP_066207855.1\|1614166_1617238_-\|SusC/RagA-family-TonB-linked-outer-membrane-protein	unknown	unknown	gnl\|CDD\|274948
NZ_CP003560.2\|WP_066207878.1\|1637114_1637705_-\|beta-phosphoglucomutase-family-hydrolase	unknown	unknown	gnl\|CDD\|182679
NZ_CP003560.2\|WP_066207864.1\|1625381_1628381_-\|N-acetylmuramoyl-L-alanine-amidase	unknown	unknown	gnl\|CDD\|271154
NZ_CP003560.2\|WP_066207875.1\|1635515_1636814_-\|phosphopyruvate-hydratase	unknown	unknown	gnl\|CDD\|234617
NZ_CP003560.2\|WP_066207861.1\|1619646_1622724_-\|SusC/RagA-family-TonB-linked-outer-membrane-protein	unknown	unknown	gnl\|CDD\|274948
NZ_CP003560.2\|WP_066207863.1\|1623660_1624995_-\|dihydroorotase	unknown	unknown	gnl\|CDD\|181716
NZ_CP003560.2\|WP_169055523.1\|1617961_1619596_-\|SusD/RagB-family-nutrient-binding-outer-membrane-lipoprotein	unknown	unknown	gnl\|CDD\|378943
NZ_CP003560.2\|WP_066207852.1\|1610215_1612243_+\|alpha-amylase-C-terminal-domain-containing-protein	unknown	unknown	gnl\|CDD\|215246
NZ_CP003560.2\|WP_066207842.1\|1605454_1607071_+\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|223669
NZ_CP003560.2\|WP_084005793.1\|1602974_1605164_-\|caspase-family-protein	unknown	unknown	gnl\|CDD\|334197
NZ_CP003560.2\|WP_066207848.1\|1609274_1609922_-\|ribulose-phosphate-3-epimerase	unknown	unknown	gnl\|CDD\|238244
NZ_CP003560.2\|WP_066207867.1\|1628565_1629147_-\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224228
NZ_CP003560.2\|WP_066207868.1\|1629323_1631717_-\|TonB-dependent-receptor	unknown	unknown	gnl\|CDD\|238657

Protein	Function_ID	Function_description	E-value
NZ_CP003560.2\|WP_084005794.1\|1633061_1634141_-\|imelysin-family-protein	gnl\|CDD\|271142	cd14659, Imelysin-like_IPPA, Imelysin-like protein. This family includes insulin-cleaving membrane protease (imelysin, ICMP)-like protein (IPPA from Psychrobacter arcticus), the Pseudomonas aeruginosa PA4372 and Vibrio cholera VC1266 Fur-regulated imelysin-like protein. They share the overall fold and a similar functional site as the insulin-cleaving membrane protease (ICMP). However, IPPA adopts a structure distinctive from the known HxxE metallopeptidases or iron-binding proteins, suggesting this protein may not be a peptidase; the histidine in the GxHxxE motif region is no longer conserved (GxxxxE), indicating a possible loss of enzymatic function or a change in substrate preference (compared to imelysin and IrpA families). A putative functional site for this non-peptidase homolog is located at the domain interface. The tertiary structure shows a fold consisting of two domains, each of which consists of a bundle of four helices that are similar to each other, implying an ancient gene duplication and fusion event.	2.68824e-69
NZ_CP003560.2\|WP_066207869.1\|1631722_1633072_-\|HTTM-domain-containing-protein	gnl\|CDD\|377454	pfam05090, VKG_Carbox, Vitamin K-dependent gamma-carboxylase. Using reduced vitamin K, oxygen, and carbon dioxide, gamma-glutamyl carboxylase post-translationally modifies certain glutamates by adding carbon dioxide to the gamma position of those amino acids. In vertebrates, the modification of glutamate residues of target proteins is facilitated by an interaction between a propeptide present on target proteins and the gamma-glutamyl carboxylase.	0
NZ_CP003560.2\|WP_066207854.1\|1612399_1614136_-\|SusD/RagB-family-nutrient-binding-outer-membrane-lipoprotein	gnl\|CDD\|378943	pfam12771, SusD-like_2, Starch-binding associating with outer membrane. SusD is a secreted starch-binding protein with an N-terminal lipid tail that allows it to associate with the outer membrane.	1.55304e-81
NZ_CP003560.2\|WP_066207846.1\|1607795_1609064_-\|aspartate-kinase	gnl\|CDD\|239776	cd04243, AAK_AK-HSDH-like, AAK_AK-HSDH-like: Amino Acid Kinase Superfamily (AAK), AK-HSDH-like; this family includes the N-terminal catalytic domain of aspartokinase (AK) of the bifunctional enzyme AK- homoserine dehydrogenase (HSDH). These aspartokinases are found in such bacteria as E. coli (AKI-HSDHI, ThrA and AKII-HSDHII, MetL) and in higher plants (Z. mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. ThrA and MetL are involved in threonine and methionine biosynthesis, respectively. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathway end products. Maize AK-HSDH is a Thr-sensitive 180-kD enzyme. Arabidopsis AK-HSDH is an alanine-activated, threonine-sensitive enzyme whose ACT domains, located C-terminal to the AK catalytic domain, were shown to be involved in allosteric activation. Also included in this CD is the catalytic domain of the aspartokinase (AK) of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme (LysC) found in some bacteria such as E. coli. In E. coli, LysC is reported to be a homodimer of 50 kD subunits. Also included in this CD is the catalytic domain of aspartokinase (AK) of the bifunctional enzyme AK - DAP decarboxylase (DapDC) found in some bacteria. DapDC, which is the lysA gene product, catalyzes the decarboxylation of DAP to lysine.	2.89762e-99
NZ_CP003560.2\|WP_158297601.1\|1634235_1635294_-\|DUF4856-domain-containing-protein	gnl\|CDD\|374396	pfam16148, DUF4856, Domain of unknown function (DUF4856). This family consists of uncharacterized proteins around 400 residues in length and is mainly found in various Bacteroides and Prevotella species. The function of this family is unknown.	2.14482e-41
NZ_CP003560.2\|WP_066207855.1\|1614166_1617238_-\|SusC/RagA-family-TonB-linked-outer-membrane-protein	gnl\|CDD\|274948	TIGR04056, OMP_RagA_SusC, TonB-linked outer membrane protein, SusC/RagA family. This model describes a distinctive clade among the TonB-linked outer membrane proteins (OMP). Members of this family are restricted to the Bacteriodetes lineage (except for Gemmatimonas aurantiaca T-27 from the novel phylum Gemmatimonadetes) and occur in high copy numbers, with over 100 members from Bacteroides thetaiotaomicron VPI-5482 alone. Published descriptions of members of this family are available for RagA from Porphyromonas gingivalis, SusC from Bacteroides thetaiotaomicron, and OmpW from Bacteroides caccae. Members form pairs with members of the SusD/RagB family (pfam07980). Transporter complexes including these outer membrane proteins are likely to import large degradation products of proteins (e.g. RagA) or carbohydrates (e.g. SusC) as nutrients, rather than siderophores. [Transport and binding proteins, Unknown substrate].	0
NZ_CP003560.2\|WP_066207878.1\|1637114_1637705_-\|beta-phosphoglucomutase-family-hydrolase	gnl\|CDD\|182679	PRK10725, PRK10725, fructose-1-phosphate/6-phosphogluconate phosphatase.	1.37218e-54
NZ_CP003560.2\|WP_066207864.1\|1625381_1628381_-\|N-acetylmuramoyl-L-alanine-amidase	gnl\|CDD\|271154	cd14488, CBM6-CBM35-CBM36_like_2, uncharacterized members of the carbohydrate binding module 6 (CBM6) and CBM35_like superfamily. Carbohydrate binding module family 6 (CBM6, family 6 CBM), also known as cellulose binding domain family VI (CBD VI), and related CBMs (CBM35 and CBM36). These are non-catalytic carbohydrate binding domains found in a range of enzymes that display activities against a diverse range of carbohydrate targets, including mannan, xylan, beta-glucans, cellulose, agarose, and arabinans. These domains facilitate the strong binding of the appended catalytic modules to their dedicated, insoluble substrates. Many of these CBMs are associated with glycoside hydrolase (GH) domains. CBM6 is an unusual CBM as it represents a chimera of two distinct binding sites with different modes of binding: binding site I within the loop regions and binding site II on the concave face of the beta-sandwich fold. CBM36s are calcium-dependent xylan binding domains. CBM35s display conserved specificity through extensive sequence similarity, but divergent function through their appended catalytic modules.	1.21237e-17
NZ_CP003560.2\|WP_066207875.1\|1635515_1636814_-\|phosphopyruvate-hydratase	gnl\|CDD\|234617	PRK00077, eno, enolase; Provisional.	0
NZ_CP003560.2\|WP_066207861.1\|1619646_1622724_-\|SusC/RagA-family-TonB-linked-outer-membrane-protein	gnl\|CDD\|274948	TIGR04056, OMP_RagA_SusC, TonB-linked outer membrane protein, SusC/RagA family. This model describes a distinctive clade among the TonB-linked outer membrane proteins (OMP). Members of this family are restricted to the Bacteriodetes lineage (except for Gemmatimonas aurantiaca T-27 from the novel phylum Gemmatimonadetes) and occur in high copy numbers, with over 100 members from Bacteroides thetaiotaomicron VPI-5482 alone. Published descriptions of members of this family are available for RagA from Porphyromonas gingivalis, SusC from Bacteroides thetaiotaomicron, and OmpW from Bacteroides caccae. Members form pairs with members of the SusD/RagB family (pfam07980). Transporter complexes including these outer membrane proteins are likely to import large degradation products of proteins (e.g. RagA) or carbohydrates (e.g. SusC) as nutrients, rather than siderophores. [Transport and binding proteins, Unknown substrate].	0
NZ_CP003560.2\|WP_066207863.1\|1623660_1624995_-\|dihydroorotase	gnl\|CDD\|181716	PRK09236, PRK09236, dihydroorotase; Reviewed.	0
NZ_CP003560.2\|WP_169055523.1\|1617961_1619596_-\|SusD/RagB-family-nutrient-binding-outer-membrane-lipoprotein	gnl\|CDD\|378943	pfam12771, SusD-like_2, Starch-binding associating with outer membrane. SusD is a secreted starch-binding protein with an N-terminal lipid tail that allows it to associate with the outer membrane.	8.49737e-74
NZ_CP003560.2\|WP_066207852.1\|1610215_1612243_+\|alpha-amylase-C-terminal-domain-containing-protein	gnl\|CDD\|215246	PLN02447, PLN02447, 1,4-alpha-glucan-branching enzyme.	0
NZ_CP003560.2\|WP_066207842.1\|1605454_1607071_+\|alpha/beta-hydrolase	gnl\|CDD\|223669	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only].	3.06047e-15
NZ_CP003560.2\|WP_084005793.1\|1602974_1605164_-\|caspase-family-protein	gnl\|CDD\|334197	pfam00656, Peptidase_C14, Caspase domain.	3.94199e-19
NZ_CP003560.2\|WP_066207848.1\|1609274_1609922_-\|ribulose-phosphate-3-epimerase	gnl\|CDD\|238244	cd00429, RPE, Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.	2.28702e-120
NZ_CP003560.2\|WP_066207867.1\|1628565_1629147_-\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	7.70157e-11
NZ_CP003560.2\|WP_066207868.1\|1629323_1631717_-\|TonB-dependent-receptor	gnl\|CDD\|238657	cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel. Ligands apparently bind to the large extracellular loops. The N-terminal 150-200 residues form a plug from the periplasmic end of barrel. Energy (proton-motive force) and TonB-dependent conformational alteration of channel (parts of plug, and loops 7 and 8) allow passage of ligand. FepA residues 12-18 form the TonB box, which mediates the interaction with the TonB-containing inner membrane complex. TonB preferentially interacts with ligand-bound receptors. Transport thru the channel may resemble passage thru an air lock. In this model, ligand binding leads to closure of the extracellular end of pore, then a TonB-mediated signal facillitates opening of the interior side of pore, deforming the N-terminal plug and allowing passage of the ligand to the periplasm. Such a mechanism would prevent the free diffusion of small molecules thru the pore.	5.68085e-41

>NZ_CP003560.2|WP_066207861.1|1619646_1622724_-|SusC/RagA-family-TonB-linked-outer-membrane-protein
MKRILLFFSLTLCAITSLYAQDKKVSGVVSDASGESLPGATVMVVGTTVGAVTDFDGNFAIDLPEEATELEVRLIGYATQRVAIGTQSVINFTMEEDAQELEEVVVTALGMEKDKKSLGYSVTEVKGDNLKSADNDILGALNGQVAGVQVTQSSGAVGSSSRVVIRGNSSLTGDNQPLYVIDGVPVDNTYNSGNTSSGGADFGSPISDLNPDDIESMTVLKGPNAAALYGSRAVNGAIIVTTKKGKGANGLGITLSNTTTFQTPLLLPNYQNEYGQGMNGEFAFVDGRGGGTHDGFDESWGPRLDAGYKTTQYNSNGELVEMTSNPNNVRDFFETGHVSTTNLAIAHGTDNTNMRFSLMYSDQKGMVPNTGLNNISTSMAIGHKINEKLRFDAKATYSNRASDNLPSQGYGANNVMQQFVWFGRQVDTNDLKNYKQADGTPYNWNYNYHDNPYWIVNENTNSQRRDRLNGYASMKYNFTDFLSLQVKGGTDFYSENRMARTAKYSINNPTGGFVEENYFVSESNFDFLLSFSKDFGTDWNISANAGGNNMYRNYKRDAMTVTGLATAGIYTPANAVGQVGAETWFEEQVINSLYATAAVGFRDYLFLDLSIRNDWSSTLPAANDSFLYPSINLSYVFSEHFELPNFISNGKVRGGWAQVGAAANPYMLRNTYGSPLPWDGNPMFKYGDIQSNPNLRPETTNSWETGLEMSFLNNRIGFEAVYYQKNTYDQIVNADVSAASGYRYTTINAGEIENKGVEFMIYGTPVQTADLKWDVSLNLTKNVNTVKSLADGVDSFVLGEYWGLTTEARPGEAMGTLYGIKYQRSPEGDIIVNEQGIPMREEEKTALGDINPDWRGGIRNTVTYKNFVFSALIDMSFGGSIFSVTNMFGEYAGVLDVTAVNREAGRTVGVVSDGKGGYVPNEVAVDAMTYYQSLYGIHEEYVYDASYIRLAQLSIGYRLPKEWLGNSGIKGATFSLVGNDLWMMYKNAPNIDPQAGFGAGMSGQGFEFGQLPTARSFGFDIKLQF
>NZ_CP003560.2|WP_169055523.1|1617961_1619596_-|SusD/RagB-family-nutrient-binding-outer-membrane-lipoprotein
MKKYIKIISAIVIAFSLTSCFKNFEELRENPNLPSEVDPESLFANVLFTSTGSNYGIQGQYFNQTAAGIWAQHFAKIQYLDEDWYEYRPSVMDEIWKRMYAGISNSPTTPHMAGLHDLELALKGSYERLAIAEETDNAAQARDAKALIGALKTTRAYIYLSMTDAFGDIPYTEANQTIALGYEQTNFQPVYDDQKSIYEALLEELEEANNYLAENGKMDTGTDLIYRGNTSAWRRLSNSLAARIYIRMSYTDASFATQGLTTLFADANRPVFEANSDDAELRYIGSQPYMHPFYYNRYIDNRDDFAVSKTTVDMLKENDDKRLYIYALPTPNSEEDDPKYVGQENGVPRDEMPVMSAVSRIGSLYKDQPAGKSYWMSYSELLFIKAEAAFRLGVPVGAYNTLIEQGIQASFEKQYSEVEEYNATVIPEAGVSMGTANEDAQIVIDRVNSSGKDPMTMIMEQKFLALYTNGAEAYAELRRTGLPRIHFVRGATQYERGLPNRFPYPFSEQTSNYENFSRASEGIEQTVYGKKVWFAENSPEIDYK
>NZ_CP003560.2|WP_066207855.1|1614166_1617238_-|SusC/RagA-family-TonB-linked-outer-membrane-protein
MSKRVLQFLFLFLGLVFTSNAQERKIEGVVMDASANTLPGATVMIEGTTIGAVTSFDGTFHIDAPANAEKIIVRLIGYKSLTVDVGTQSKFEFVLEEDVEQLEEVVVTALGIEKDKKSLGYSVSEVKGDDLKGSDNNVLNNLNGKVAGVMVNTSSGAPGASSRITIRGNSSLTGNNQPLFIIDGVPVDNSYNSGNTSSGGTDFGSPINDINPDDIESMSVLKGPNAAALYGSRAQNGAIVITTKSGKGSEGLGVSLSNTTTFQKPLLLPNYQNEYGQGLNGQFSFEDGANGGTYDGVDESWGPKLDAGLMIPQFFSNGEAVPWVSNPNNVEDFFETGHVSTTNLSIQNATDLSHVRFSMMYSDQKGMVPNTGLENYSASLNFGHKIHENLQFDSKVTYSRRSSDNLPSQGYGENNVMQQFVWFGRQVDTNMLKDYKNPDGTPYNWNYNYHDNPYWILHENTNSQLRDRINGYASLKWNITDYLNFKVKGGTDLYNENRLSKSAMYSINDPDGGFTESNYFVNETNFDFLFSFSKDFGTDWNVNANFGGNNMYKVYSSNSMTAFGLASPGVYTPANATGQVESTTYFEEQIINSLYGTASVGYKDFLFADISVRNDWSSTLPKANNSFLYPSVNLSYVFSEHMELPNWISNGKLRGGWAEVGNGATPYSTSNVYVSGLPYNGYPMFKYETTQANPDLKPETTQSWEVGLDMGFFNNRLGFEAAYYEKSTYDQIVPADVSAASGYRYSYINAGQIDNRGVELMVFASPVQTKDVTWDVSFNFSKNKNEVVSLAEGVDSFVLGEYWGLTTEARPGEELGTFYGYAYQRDDQGNVMVDENGYAMKTDEKVKLGSINPDWRGGIRNSVTYKNFTLSALIDISVGGDIFSVTNMFGEYAGVLDVTAMNREAGRVTPGVSPDGSTNDKVVPTQDYYQSLYGIHEEYIYDATYIKLAELSIAYNIPSTFTKKYGIKGMSVAFVGNNLFMIHKNAPNIDPQAAFGAGLDGQGFEFGQLPSPQSFGFNIKMNF
>NZ_CP003560.2|WP_066207854.1|1612399_1614136_-|SusD/RagB-family-nutrient-binding-outer-membrane-lipoprotein
MKKSIIYIASIILTLSMSSCFKDFDEMQNNPNYPTDVNPGNLFANATFSRIGGIYGFQAEDFNLTASGLWSQHFAKIQYIDEDWYEYRSNAIDGYWKYAMSGSSSNGSASMYDLELALHKVRETKNALLESPAGNEKQIANYEAMEGAILVMRTYFFSIMTDVWGDVPYSEAFKTVALGYERTITQPKYDAQKDIYTDFFKQLELANDLLSNGGVVELQSDMIYGGDASKWRKLANSLSARLYIHISKIDQAIAQEGLTRIFSDPGTYPVFSSIEDDAMLTYAGTQPYEHPFFENYVRDGRDDFSSSKTMIDMLKERKDTRMYIFATPTPNSIALFDSTKNYEDIEYTGQENGVPKGEAFAIADRSRIGVLYRSTPNGVSHVMSYSELEFIKAEAAAVLGVGAAGTPQTAYENGIKASFERQYKLADQYGIKTASFGDIRGQITFSEDKVIEEDGYEVVISLANLSEHIDRTLAQASVSWDIAKAEQLIAEQKFISIYTNGPESFVEVRRTNYPQLTFVRGGTQYKGLGLPYRFPYAISEQTTNAANWAAAAEGITNTMYGKTVWWNHKAFDNYRIVE
>NZ_CP003560.2|WP_066207852.1|1610215_1612243_+|alpha-amylase-C-terminal-domain-containing-protein
MSKQLPQLVKDDMWLEPQTEQINARINSYNDLKTNLQNKYGSLQNFASAFKFLGVNYDPVNEGWWYREWAPAAHALYLEGDFNNWNRDSHPLRRIEGSNEWNGVWEIFLPKADYKDTFVHGSFIKVRVVSQAGDHERIPAYIERVVQEEGTPNFVGQLWFSEETNFDWSGDDFKTSSIKAPIIYEAHVGMSQEEEKMGTYNEFTENILPRVKALGYNCIQLMAVQEHPYYGSFGYHVSNFYAATSKFGTPEELKNLIKTAHSMGIAVIMDIVHSHAVKNHNEGINEFDGTVYQYFHSGDRGNHPDWDSKLFDYSKWEVIQFLGSNVKYWLDEYHFDGFRFDGVTSMMYHHHGHAGFGSYDDYFNMGVDVDAVRYLQLANEIAHEVKPDVISIAEDVSGMPGLSRGIQEGGVGFDYRLSMGIPDFWIKVLEEQSDEQWNLWDFWSVMLNKRANEKAIAYSESHDQALVGDKTIAMWLMDAEMYTGMDNESGSMVVDRGVALHKMIRFLTCVLGGEGYLNFMGNEFGHPEWIDFPREGNGWSHQYARRQWSLVENGFLRYQKMNNFDGAMVHLVREHHTLEPNTPVDLLNMDTENKTICFRKGDLVFVFNFSPTNSLPDYKFFVGQEGKYEMILSTDEKQFGGFGRNERGGEYFTDDDKSISIYNTNRSAMVFKIVD
>NZ_CP003560.2|WP_066207848.1|1609274_1609922_-|ribulose-phosphate-3-epimerase
MKTIIAPSVLAADFANLQRDCELINESKADWFHIDIMDGMFVPNISFGLPVCAAIKKHAKKPMDVHLMIEQPDRYLEAFKKAGADMISVHAEACPHLHRSIQNIKELGLKAGVALNPHTSLDCLEFLLHDIDYVCIMSVNPGFGGQKFIPSTYDKVRKLKAMIDAAGADVLIQIDGGVDSSNAEKLAEAGATVLVAGSYVFGAEDPKSAIEKIKF
>NZ_CP003560.2|WP_066207846.1|1607795_1609064_-|aspartate-kinase
MKVFKFGGASVKDAESVQNVKNIIKEFSDQKQLVVVVSAMGKTTNLIENIVVKFIKGDDYQQELDKLKSFHLDIAHELFKNQEASIFIQIEKIIYDLEVHLKLRYFSNDELYDQVVCYGELLSTHIISAYLNQEEVETKFLDARIYIQTDEYWREASVDWNWTTKMIKADLPDYLQNGIVVTQGFIGGTVNNKTTTLGREGSDYTAAIFAYCLDAETVCVWKDVPGIMSSDPRRIKEVEKFDELPYKYAAELTYFGASVIHPKTIRPLALKNIPLFVNSFVDPAAKGTAIGNFTDFPSTASVIFKGKQSLIRFEEKDYLNVSKGDLGVIFTECARLNLKVNMIKNSALSLSICVNHRQDKIDKLMNLFEDRFKIEMIKDLELVTIKNYKEDTINQLDLSLNDVYMRQYSKDTLQIVVNEGSL
>NZ_CP003560.2|WP_066207844.1|1607247_1607667_-|hypothetical-protein
MDTTAIDKALIAIVEKRQQLNALTYEDESYDDIEDELHDLEDDFIDEHGETLEDIIGDVHEEYKVDTEVLSPLSYIAQEYVETGANDLGKQFDCNHAQGVPVEVDELENKPTRLVIIPNPLRIILNVDSKNRKIVWQNA
>NZ_CP003560.2|WP_066207842.1|1605454_1607071_+|alpha/beta-hydrolase
MKHFFVLLLIIFSVQTSKAQWMNENLEGKWIGTIDFELYPDLVFVNIDSVIKVKLFYHQEETEKVENYKETSDSLTFQIDTPSMAATYKGEIINDSTIMGKLEVGFKTIDCNLIRIAAINIDDMGSLLGYFSFEDGRVIQIEPFYIDGTTHPLRILDYYNGKQRILYPTYKDKNKVTFAAGPKMATSYPTDFTITLFRNDAGEALRLQYDSFVEGTSLKEGKRLQELANTKEIIVKNDDVQIEGTLTYPNIDTNNHPLVIFVPGAGPQFRGNLFDEYIRTLPYYGVATYVYDKRGCGLSTGDRKSANFDDFASDLEAVIKKLKKAKHIDENRIGIVGFDQAGYVMPLALQERDDIQFIVNLSGAVTPFADQELQALQKRLTADQFTNEDIELTLKYQKLFMKFLEDDQKTPELMEVYNKIILTPMIEYITTLDQQEYIDWWKRYYKFDAKASWEKINCPVLSIYGEKDNLLDPQSNLDRIETFNNHSLFTTKVLEKSNHLLLIGGKRGDVQLTEIEGYHPFLFKTLNEWIGEKMGMLK
>NZ_CP003560.2|WP_084005793.1|1602974_1605164_-|caspase-family-protein
MKSLYCSIILFLFSFSLFAKEKHALIIGIDKYTNSKKARYAEWQDLDGAVNDATSIYDLLKFKYGFNSKNMSLLTSEKQTTKKNIIKNFEDLIKVVEKGDDVFIYYAGHGAQIKNSKFYEADKKHEALVPSDVLKTGDYLLDVEINTYFSRIIGKGGELVVVFDNCFSGSSSRGKIDLEQLRSRYVPVDDIDLDRSYPKSKNLVEKGALIVSAAQDYQLAKEYKDDRGQSHGVFTYALMKSLQMGSVHESSEDIFKRVNSIILYNSVPRQDPVIEATKERLGKPLFGEVSDSYQGVRVAVIDAENKYKIHIDGGNAIGLVEGAELINQDKDITLEVTELSGINTCFAKLVKGDDNLSEGDLLTVSKWAPFSPDRLKVKVMKMGVTDIDLEAIKSLSQTLNEAGLLAYSPLEEDVSLKVYLTDKGWMGSDIKNEEYDFGKKLPKSSKLVDILHKKVEGKKIFIEVPPSTKVAQSMYSDLNGQPKVEIVASEKDYDYRLIGRFNENNNLEYAWLRAHAHNNSNENPFPDETDWKTDQKIYVLTDYAKRLGNVKGWLVTKVPNNTVNFPYKLGLQRESDQKIITEGALTEGEKYGLVLYNDPNLYLNWKSPDRYIYVFLLESNGEMTLLFPQNHGAVENFTEQICKDDNGDYLSKVMLSDPDLLYIEPPFSTDNILMLSTEKIITDTSIFEQKGVQTRGADDSFDDFMEGDKDDEPANWFLERHTFFGESIK
>NZ_CP003560.2|WP_066207863.1|1623660_1624995_-|dihydroorotase
MSKILIKNAQMVNEGQIKQTDVLISEGKIEKIAASIPHSGEKLIDATGKYLLPGLIDDQVHFREPGLTQKANIQTESRAAVAGGVTSFMEMPNTKPPTTTIEKLEEKYAIAKETSLANYSFYIGASNDNLDEVLKADPKNVCGIKVFMGSSTGNMLVDNEQTLANLFQKAQMIIASHCEDDPMIAENYEKYKEKYGEDIPMECHPEIRSAEACYSSSSKAVALARKHGARLHILHISTAKELELFDNDIPLKDKKITAEACVHHMWFSDEDYKEKGAFIKWNPAVKTKADGAGVLAGVLNDKIDVIATDHAPHTIEEKSNKYGSAPSGGPLVQHSLQVLFDFYKQGKISLEKIVEKACHNVAILFDVEKRGYIREGYWADLVLVDDNKPQEVTKDSLHYKCGWSPFEGHTFSSSITHTIVSGHLAFENGQFNDSVKGQRLTFDR
>NZ_CP003560.2|WP_066207864.1|1625381_1628381_-|N-acetylmuramoyl-L-alanine-amidase
MKRIFFCLLLLPIFSFAQTKSDAIRKFKVYLEKAKNKEFHYVPDSSAKLETAQIQPKSKRVNFFLGKQFEYTPVRNEDVEDLYHQVRDILGKAYQSYDLKFYVGKTLEKERVRLAKKQRWPITPKCEFKDLVPNYLRSEHNVDESRNIVIAENDSIKIPLVINLGIQPTKNGLSNKTIALWNSHGWYYEHSLDRWEWQRARLFQTVEDLLPTSFVLPYLAPMLENAGANVLLPRERDIQSESLVVDNDGDRKGYKEEGVVFAGGEGFLQKNIYNDNELPFQLGTSRKFKANHHDKEVITWSTQGKVKGDYSVYVSYATLENSVNDAKYTVYHQNQKKEFLVNQTMGGGTWVYLGTFEFNGHPSEKVTLSSKTHSKTPNLMVTSDAVRFGGGVGNIQRGTSTSHRPRFMEGARYHLQYSGAPVNVFTPNENKNDYKDDYQSRGEWVNWLTGSTYALNPDIENKGLNIPIDLAVALHTDAGISESDTTKGTLMIYSSTDMDKETKFSSNQSRYTNRDLADLIQTQIVEDLRVTHDSIWNRRELWDKRYSEAVYPNVPSVLIELLSHQNFKDMQYALDPKFRFDVSRSIYKGILKYIAYQNNYEYVVSPLKPTHFSIGLEKHKAILKWKPQFDPLEKSANPTHYKVYTQVENEGWDVGTIVKDTVFEVKVTKGKLYQFKVTAANDGGESFPTEELAMANFHNDPVLIVNAFDRIGGPTYVESENYTGFTSENDGVPDGIDVSFTGKQYDYNPNSEWLDDDTPGHGGSYADAETILVRGNTHDFTKIHGKALLYYQRSFVSCNRKAVEDGIVNLNDYQIVDIMLGEQKSTLRSFDNKLEYQCFTPKFKESIHEFTKKPQSKLLISGAFVGSDLVFSQDGKHKGRKHKDVIFAHSALHFKSRGSHADRTGNLYNIHPSFNSFKDLTYAKNIDTHLYAVEAVDALDPYDSNTEVIGRYLGSNKSAGIAFKNEQNKVIVIGFPFETINLEIKRIELMGEILQFFEK
>NZ_CP003560.2|WP_066207867.1|1628565_1629147_-|TetR/AcrR-family-transcriptional-regulator
MAKSIDETKLQRIKEATIEMVVSKGYGGASVSSIAKKAQVADGYLYRHYPSKAALVQALYHSNIEYFRNLIFKYMEEHEKLEEVIYHFCNEIFTLANDNPSRAKFINMLMNDYTFLMSKEMVLKIPESSKRMVERGYNTGEINENINVEMFNAVFPAIPIQYASSRATEVFSKERLTENDAKIVAHLVINALK
>NZ_CP003560.2|WP_066207868.1|1629323_1631717_-|TonB-dependent-receptor
MLHRLLYIFGLILLSLTSAFAQYSIKGRVVDVKEQQLDAVDVFIKSKALKVSTNNKGEFIIDGLSNGNYVVGVFKYGFSPIEKTVTVKNENQTINFTLKPLETVLDEVNITDASTTAEIKRLEAVVGTSIYEGKKSEVILVDNLTANLATNNSRQVYNRVPGLNIWESDGAGIQLGIGGRGLSPNRTSNFNTRQNGYDIAADALGYPESYYTPPMEAVEEVQIVRGAASLQYGTQFGGLLNFKMKRGNTEKPFEFTTRQTVGSFGLFNSFNSIGGQKGKVNYYAMYQYKTGEGWRPNSDFNVNTVFTGVQYDVTDKFKIGVEITHMDYLAQQPGGLTDDEFYQDPRASYTEQNWFKVNWNIASVNLQYQFTPKAKIEMRNFGLLASRDALGINLNKLDPYNEPRLLVADEFRNVGTEIRYMQHYDFKGKPSVFVIGSRLYHGNDDKKQGDASDGNDANFNFSHPDSLLSDHNFRINNYAFFAENIFQINDKFSITPGIRFEYIQTTGKGYYQQTFFEPGDDGLIEEITRPIEDNINNTRNIFIAGVGFSYKPIQDLEVYANISQNYRAITYSDLRSLNTNVRIDPNLKDEKGYSADLGLRGTLPWLNYDVSTFYLRYNDKIGLANPANPIRTNIADAYTLGIESYTEIKWMDIFSPLSDYHFNLFANVAFIRGKYISEDRVYDGKNVELVPPFNIKTGINAGYKSFNLSLQYTYVEKHYTDAANTEEPLADAVYGPIPSYYVMDLSAKYSFKWFGIESGINNLTDNMYFTRRATGYPGPGIIPSDGRNYYFTLQFKI
>NZ_CP003560.2|WP_066207869.1|1631722_1633072_-|HTTM-domain-containing-protein
MVTKIDKYINQQVSIAPLVVFRIIFGLMMAGSGIRFWANGWIDSQFIQPSFFFHYYGFSWISPLGESGMYLIFILMIIAAFGVAFGAFYRISAITYFLTFTYVELIDLTNYLNHYYFVSLMAFIMVFLPAHRRFSIDVYRNPETFRREVSAWTINVVKLQLGIVYFYAGIAKINTDWLFKAQPLKLWLASRTDMWLIGPLFKYKWVAYFFSWAGCLYDLLVPFFLANKRTRVLAYLAVIFFHIITSALFPIGMFPFIMIFSTLIFFSDEFHERIILFLGRIFSTENLDFKVTRGRINSLPQHLIKIGFAAFFLLQLIFPFRYALYSDNLFWTEQGFRFSWRVMLMEKSGAATFYVENPENNHRIEITNSDYLTPLQEKMMATQPDFILQYAKFLKEEFTKKGIKSPKVFVDSYVSLNGRPSKRYIDPTVDLSQLSDNFKPKSWILPFKG
>NZ_CP003560.2|WP_084005794.1|1633061_1634141_-|imelysin-family-protein
MNKINLFLALLFCTILYSCDDSTDTMSVEFSQIEMLKNYSDNLIVPAFKAYSESAIELETATESFLADANDETLSNVRGKLNDTYQKWSKVNAFQYGDALSMNLLVNTNSFPTKFSEIESKIAAGDFNLGSISSFNVKGLPALDYLLNSGSTLDLFTTDANQANRRQYLKTVVEAVKNDADAIYNSWTSGYATEFAANEGIDPSSSISYIVNEYNKAYERCKNQRVGYALGKNSISGNSSPMSVESYYSQETLSLLKSNVESLRSIFNGGDGIGLADYLKAYYTAGAVEEDLSEKINNQFDVILAQLDKCSDSFSDHIEAKDETVETLYTEMSKLVVMIKSEMPSVLSVKITYQDSDGD
>NZ_CP003560.2|WP_158297601.1|1634235_1635294_-|DUF4856-domain-containing-protein
MNTKLFISLLALSSIFFSCSDDTDTTPATRVNYDFDNVDYSGQTARIMMLDSLESYIKSANDGATAITATHMNAIYTNESGDLFGSSKDLESKTANDPTLIANVYDQVPAYFASAEVASGNADNIIGGRLFDAEGHEPAQMVGKGLMGAVLFYQSVSYYLTAEKLNAGDNETVTEGKGTDMEHYWDEAFGYFGATTDYLTNEEGTNYYWAKYAASRSSVYDVRADIFNAFIAGRQAIADKDYEERDVQAAIIQAKWEELVAINVVHYANSVISDTELGDILHHWSEAVAFATALQYNTSKTITNENIAVILAALYSDDIKNEDKTALNAKMEAAKAVIKSTYGFSDEVMSNL
>NZ_CP003560.2|WP_066207875.1|1635515_1636814_-|phosphopyruvate-hydratase
MSLIVDVHARQILDSRGNPTVEVDVTTETGTVGRAAVPSGASTGEYEAVELRDGGSEYLGKGVLKAVENVNEIIAEELIGASVFEQNAIDQAMIALDGTPNKAKLGANAILGVSLAVAHAAAAELGLPLYRYVGGVSANTMPVPMMNIINGGSHSDAPIAFQEFMIQPVSATNFTDAIRIGCEVFHALKKVIHDRGLSTAVGDEGGFAPAFDSTEDALDSVKIAVANAGYEFGKDITIALDCAASEFFVDGKYNYEKFGDMKGGIKTSEEQAQYLAELAEKYCITSIEDGMDENDWDGFKKLTDLCGDKVQLVGDDLFVTNVEKLERGINEGIANSILIKVNQIGSLTETIAAVEMAHRAGYTSVMSHRSGETEDNTIADLAVALNCGQIKTGSASRSDRMAKYNQLLRIEEKLGSTAKYLGLKAFKQDFNF
>NZ_CP003560.2|WP_066207878.1|1637114_1637705_-|beta-phosphoglucomutase-family-hydrolase
MKKINIPAQIRGLIFDMDGTVADTMPTHYLAWKVVFDEIGYDFTEKEFYELAGVTSVEILEKIANEHGFDVDAQHYADKKDQEYLKLVAKGEVKPVEPIFNIVKEYFGKLPMAIGTGNNDEVIEHTLTGLGAYHMFDVKVGADQVENGKPDPETFLQCAIRMNIEPQYCMVFEDGNPGIEAAKRAGMRVIDVREYI
>NZ_CP003560.2|WP_066207880.1|1637838_1638381_-|hypothetical-protein
MEQAITDQVICRNCKTPHRHDIENCTVCDFPIHGTDKEQSVFIAKQITQKADVKDSFRKMQLSRNLLFGIGVFNICMALFSLIIEKSFGIELFFGIALGGLFIFFSLLTKKNPLFATGGPIVLYLIYIVALTTIDSRYLTDGVIFKIAFFMILGYGFFSTIKANSILKKNPYLVSLIDKK

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Crispr_ID: NZ_CP003560_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP003560_3

4269656-4269771

Orphan

Consensus_repeat	Method
TAATTTTACGTCATCATTAAAACGTAAATATTATG	CRISPRCasFinder

1 spacers

csa3

The CRISPR arrays of NZ_CP003560_3

>merge|NZ_CP003560|3|4269656-4269771|CRISPRCasFinder
TAATTTTACGTCATCATTAAAACGTAAATATTATGGTAAGCAGTCGCCCATCCCCATCTATTATGCCTCAAATTCCTGACTTAATTTTACGTCATCATTAAAACGTAGATATTATG

>NZ_CP003560|3|3|4269656-4269771|CRISPRCasFinder
TAATTTTACGTCATCATTAAAACGTAAATATTATG	GTAAGCAGTCGCCCATCCCCATCTATTATGCCTCAAATTCCTGACT
TAATTTTACGTCATCATTAAAACGTAGATATTATG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP003560.2\|WP_158297743.1\|4258728_4259439_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP003560.2\|WP_066211582.1\|4255858_4257949_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225936
NZ_CP003560.2\|WP_066211599.1\|4273153_4273678_-\|NADH-quinone-oxidoreductase-subunit-NuoB	unknown	unknown	gnl\|CDD\|173274
NZ_CP003560.2\|WP_066211584.1\|4258084_4258717_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP003560.2\|WP_066211591.1\|4267416_4269186_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP003560.2\|WP_066211588.1\|4259481_4267413_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|349951
NZ_CP003560.2\|WP_169055540.1\|4270421_4271849_+\|IS66-family-transposase	unknown	unknown	gnl\|CDD\|376980
NZ_CP003560.2\|WP_066211602.1\|4273759_4274686_-\|hydroxymethylbilane-synthase	unknown	unknown	gnl\|CDD\|234612
NZ_CP003560.2\|WP_066211579.1\|4251135_4255854_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP003560.2\|WP_066207775.1\|4270055_4270397_+\|IS66-family-insertion-sequence-element-accessory-protein-TnpB	unknown	unknown	gnl\|CDD\|377551
NZ_CP003560.2\|WP_066211609.1\|4277234_4277813_-\|non-canonical-purine-NTP-diphosphatase	unknown	unknown	gnl\|CDD\|237823
NZ_CP003560.2\|WP_169055539.1\|4249469_4251122_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP003560.2\|WP_066211573.1\|4248855_4249350_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP003560.2\|WP_066211604.1\|4275114_4275516_+\|metalloregulator-ArsR/SmtB-family-transcription-factor	csa3	COG0640_csa3_CAS-I-A	gnl\|CDD\|236654
NZ_CP003560.2\|WP_066211605.1\|4275529_4276057_+\|RNA-methyltransferase	unknown	unknown	gnl\|CDD\|349970
NZ_CP003560.2\|WP_158297744.1\|4269497_4269653_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP003560.2\|WP_066211571.1\|4247329_4248856_+\|type-IX-secretion-system-membrane-protein-PorP/SprF	unknown	unknown	gnl\|CDD\|143586
NZ_CP003560.2\|WP_066211597.1\|4272662_4273151_-\|NADH-quinone-oxidoreductase-subunit-C	unknown	unknown	gnl\|CDD\|376317
NZ_CP003560.2\|WP_066211607.1\|4276140_4277100_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP003560.2\|WP_066211595.1\|4272235_4272550_-\|YbjQ-family-protein	unknown	unknown	gnl\|CDD\|376657

Protein	Function_ID	Function_description	E-value
NZ_CP003560.2\|WP_066211582.1\|4255858_4257949_+\|hypothetical-protein	gnl\|CDD\|225936	COG3401, COG3401, Fibronectin type 3 domain-containing protein [General function prediction only].	3.0333e-06
NZ_CP003560.2\|WP_066211604.1\|4275114_4275516_+\|metalloregulator-ArsR/SmtB-family-transcription-factor	gnl\|CDD\|236654	PRK10141, PRK10141, DNA-binding transcriptional repressor ArsR; Provisional.	1.92973e-12
NZ_CP003560.2\|WP_169055540.1\|4270421_4271849_+\|IS66-family-transposase	gnl\|CDD\|376980	pfam03050, DDE_Tnp_IS66, Transposase IS66 family. Transposase proteins are necessary for efficient DNA transposition. This family includes IS66 from Agrobacterium tumefaciens.	6.80269e-90
NZ_CP003560.2\|WP_066211588.1\|4259481_4267413_+\|hypothetical-protein	gnl\|CDD\|349951	cd06503, ATP-synt_Fo_b, F-type ATP synthase, membrane subunit b. Membrane subunit b is a component of the Fo complex of FoF1-ATP synthase. The F-type ATP synthases (FoF1-ATPase) consist of two structural domains: the F1 (assembly factor one) complex containing the soluble catalytic core, and the Fo (oligomycin sensitive factor) complex containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. F1 is composed of alpha (or A), beta (B), gamma (C), delta (D) and epsilon (E) subunits with a stoichiometry of 3:3:1:1:1, while Fo consists of the three subunits a, b, and c (1:2:10-14). An oligomeric ring of 10-14 c subunits (c-ring) make up the Fo rotor. The flux of protons through the ATPase channel (Fo) drives the rotation of the c-ring, which in turn is coupled to the rotation of the F1 complex gamma subunit rotor due to the permanent binding between the gamma and epsilon subunits of F1 and the c-ring of Fo. The F-ATP synthases are primarily found in the inner membranes of eukaryotic mitochondria, in the thylakoid membranes of chloroplasts or in the plasma membranes of bacteria. The F-ATP synthases are the primary producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). Alternatively, under conditions of low driving force, ATP synthases function as ATPases, thus generating a transmembrane proton or Na(+) gradient at the expense of energy derived from ATP hydrolysis. This group also includes F-ATP synthase that has also been found in the archaea Candidatus Methanoperedens.	2.0973e-07
NZ_CP003560.2\|WP_066211609.1\|4277234_4277813_-\|non-canonical-purine-NTP-diphosphatase	gnl\|CDD\|237823	PRK14823, PRK14823, putative deoxyribonucleoside-triphosphatase; Provisional.	8.36638e-99
NZ_CP003560.2\|WP_066211602.1\|4273759_4274686_-\|hydroxymethylbilane-synthase	gnl\|CDD\|234612	PRK00072, hemC, porphobilinogen deaminase; Reviewed.	3.13578e-113
NZ_CP003560.2\|WP_066211595.1\|4272235_4272550_-\|YbjQ-family-protein	gnl\|CDD\|376657	pfam01906, YbjQ_1, Putative heavy-metal-binding. From comparative structural analysis, this family is likely to be a heavy-metal binding domain. The domain oligomerizes as a pentamer. The domain is about 100 amino acids long and is found in prokaryotes.	9.2141e-45
NZ_CP003560.2\|WP_066211605.1\|4275529_4276057_+\|RNA-methyltransferase	gnl\|CDD\|349970	cd18097, SpoU-like, SAM-dependent rRNA or tRNA methylase related to SpoU. RNA 2'-O ribose methyltransferase catalyzes the methyltransfer from S-adenosyl-L-methionine (AdoMet) to the 2'-OH group of ribose in tRNA or rRNA. It is part of the SpoU family of MTases, a subfamily of the SPOUT methyltransferase superfamily. The SPOUT methyltransferase superfamily is a large class of S-adenosyl-L-methionine (AdoMet or SAM)-dependent RNA MTases which are structurally characterized by a deep trefoil knot.	2.84623e-71
NZ_CP003560.2\|WP_066207775.1\|4270055_4270397_+\|IS66-family-insertion-sequence-element-accessory-protein-TnpB	gnl\|CDD\|377551	pfam05717, TnpB_IS66, IS66 Orf2 like protein. This protein is found in insertion sequences related to IS66. The function of these proteins is uncertain, but they are probably essential for transposition.	7.13771e-39
NZ_CP003560.2\|WP_066211571.1\|4247329_4248856_+\|type-IX-secretion-system-membrane-protein-PorP/SprF	gnl\|CDD\|143586	cd07185, OmpA_C-like, Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA. OmpA-like domains (named after the C-terminal domain of Escherichia coli OmpA protein) have been shown to non-covalently associate with peptidoglycan, a network of glycan chains composed of disaccharides, which are crosslinked via short peptide bridges. Well-studied members of this family include the Escherichia coli outer membrane protein OmpA, the Escherichia coli lipoprotein PAL, Neisseria meningitdis RmpM, which interact with the outer membrane, as well as the Escherichia coli motor protein MotB, and the Vibrio flagellar motor proteins PomB and MotY, which interact with the inner membrane.	5.71112e-27
NZ_CP003560.2\|WP_066211599.1\|4273153_4273678_-\|NADH-quinone-oxidoreductase-subunit-NuoB	gnl\|CDD\|173274	PRK14813, PRK14813, NADH dehydrogenase subunit B; Provisional.	2.15293e-98
NZ_CP003560.2\|WP_066211597.1\|4272662_4273151_-\|NADH-quinone-oxidoreductase-subunit-C	gnl\|CDD\|376317	pfam00329, Complex1_30kDa, Respiratory-chain NADH dehydrogenase, 30 Kd subunit.	6.86944e-56

>NZ_CP003560.2|WP_158297744.1|4269497_4269653_+|hypothetical-protein
MSKKAEMYAHIASWKTSGLQQKAYCPLHSIKLSTFHYCKQSAIPIYYASNS
>NZ_CP003560.2|WP_066211591.1|4267416_4269186_+|hypothetical-protein
MKKIKLFIFFLIINNISFGQSKYQLFGEVKKNEKVSLLWIVDEYDSNLDGVNFKKRVKGSQSWETLNKSLLKQYNQLDKSLNNVSNNQSINNDLEKKRLELVNSTNNSDRLNLITQEELTEYLVQTPGNMTLLMLMFMYDYDRGLIYGYGYEDFSISKKQKIEYGLFTVINGEESQNPVAIFEANTSENLDLDIEPISSKIKRKGKNILLTLDYDGEYLDSKTNFVGFDIYRKENGKNRNLITEKTIWLDKSSNTRVLFYKDEIIDKEINYTYEIIPVSLFKNTGKPKELIWSKSKDLSFWTPELLNEQDKNTDFIEKGVKLKWAVPEDLKENIKGFIVQRKIDNGNFESISDTLNNSVTLYQDSNLKTLEYKVTYRLVVKPVDSYEIWSDELKLYYLPKPTIENDEVNLTLQPNIVNGEVVVDMKWNSISSDKMKGYIIYCDRSGGILARERGIGYLTNSNYTYKVEGVTGKKYSFTVKYADNLEIVYDYSDTVKVILPSLELPTINIWPFSVNESSITIEWSFPEEIQDLKEFIVFINDKEFTRLDKNLRTYTFENLEAGAYKISMVATSIYEVESKKSKVRTLKVL
>NZ_CP003560.2|WP_066211588.1|4259481_4267413_+|hypothetical-protein
MKTFNSITLFILVFMTSLSVYGQRYPVQLTFMVTPPYPIRLSDYAQVGNTKVQSSIWLKDLSQPDLPVKLRLRIENSQKRLILETKPSYSPEPIHLIGGQTEILDGSVLGQYFELNNLTALSGSTSSIINNGGRLPDGYYKFSLEVLDYYTGRKISNTSVIQCFLVLSDPPLLVMPMDKQKVIVTEPQFINFSWTPRHLASPNKPQNVTYRFQIVEILRDNQPAGDAFASTNPIVDEEGISVPAYQLTALDAPLFPGNKYGWRVQAYDEDENGLIKNNGWSEPRMFQFGDACTECEDFAIANTTHSRAELIWSGKIEHSTYEVRYRRQATEDDEEEIPWKTEEFNTDQAIIKPLSDNTTYEFQVRGLCPGNQKGNWSETKTANAESKPESTYSCEGGEVIIAWENSDPLTTPMKVGEQFTAGDFDVTVVEDDVNNGTHSGVGMIRIQAFNKVFFNVEWDDITVNTDNRLIDGEALVTGSDTDIIPEDIANAIMAGLDVLDQVLEEAEKVAKFIENIFDNLPEDIKNELNKTKEELADAEEELANAKDALKGAKSIGDEDAIAASKELVDQAKENKSLAKENKKQAINKALETIKNEFKKGLVAIGKLKDNLVDISKEKDPINKQNIIDEGIANSEDILSFFQLLDGQTELPENIPTFNDVTDSLAAIEIFTILEEGGMTIDNGELTKLPIAIENVRRGIWAFKNRFKNYNSDDLITSNDTTALGDSTTSQIVANVIISKDIKKGDKVTFGPIAMTLNSDPISISKSNNLLKYKIEKTSFILPFKNSSVGEYSIEISNATITYEIDSTTESLSSADIEWSNDEGLNLDFSFIDADLKEVDLHLDNEGKLTGDLDFSAHLADDKLLLSSLRIKKGFGGDFSFSYANTENYFDGSFNFSNLSSLNAEYVKGEDVIASVSDAKLSNDGELNLKLSLATPLKHNYRGVDMTLDEFDADIDISLKDTLTFNSLKSKLKVENITGVTSTLNLNCELIGDQITTSLTNTNNIEFYGFKVNAETVEASFDKHFNFLGLEIKNTSTEIDKKITFSGQELEIKGNLDIAKISIETTEADSLLINEVDLSGSLNLNNDLATLSLSSSKYEETDSTLSLVASITFKDQNNYGSIYFDQIKINKSGEFTVKDAGIQFITNVGPVKVEFEKQLANTQNITIAKAKVTSYLYDEKEKVIDSLFIETDVEYTSNNNKLSYLKIESDSLNIDVHELYSVNSTINGYEFEYTKTENKDIYKGEVKFKVNLNEDKFLNESETVVLKKGVEGYFSLGYNSDSTKIAYLDFSNIQKLNIDLLKGDKVYAAIENASLDKKGILKTDITLKANNIEYKENGYDISLTALSGNISVDFINHDYKFNSLTATAKLNKFMDKEVPLELSCSLNDTTIIANVSGNEKIDFYGMKVTPGDLKAGFDHEFVFQGFNGQNVEGTYEKNIDGILFKGDFTIEKIDVIKDTLKNLEMKGNLQYGDLASLALSNAVYNDSNQKISLNAKVTANQSSTSNNMNLSFEKIIIDKEGNITIGAAGGEGVLAYGPIKLEFSQELQELSNPINAEAKVIFYIQDSTLTDSVVVHTDVTYQQKEGEIIYAKVELKDKSIDFPEVYDIESKVTSFDIEYKKENETKTLEGNVTFNGSLTKDISYQEDKVILKKGLEGTFKYVIDYNSSDPTNFGYFNFGGLSKINVDFKKDNKVFAKITNASVNSNGVVSSNFHTTEELNYSENNLEVTLKSLKGKVEFNWYKRDFKLLQVEGMGEVNNLPGSSAKMNFSLGINNSKIYGSLSDIDSVNIYGLNMDAKKIGVVFNDQFDLISVSGNNINASYVKSLNGKKLSGNILIDEFLYKEEEIKTFKGSGEVAYDPFAKIELISGVYNSEEKVIEFSASVDLAANENNQAKTTISGIKIHENGEYEIGEVSVDAFAQAGPVSVKFKSEPSITDNISKAEAEVTLVVKKGDIDNSITYSTEVEYTKDSQKGFTYLKINSEDLNQEFPEIYGINTKVKDVLVNYEIVDDKPVYSGSITFSASLEEDKYIYKELVQLKKGIGGTMSISFDSKVEGYFKDIDLSELSGLNIVMLKQQKEIAKFTGSIARGTLLNGRFSVTQPQSVSMNKFNATLNRFDVEATYDFSEQNFTFNTGSGDLKVDGIKGLEGDILLGIDYNEQNIAISLSSETKDLKFCKMNVENPSFTFEVDDNLNLTKIEGSFGVKPEGMSSAITLSDLLIIDGEVKSVGGKANIDYKNFRFDILSASYNSITGLDMNAKVLLGDSYVEVESFKIDNNGIVSVGKAKGDFNKSLMAIRFDATFNENRFQGSFDATISRKLSITGTVDMGTSECDNCNENNSFNYGYFKLKVGAPIPVFPGVSISQLGGQFGYNYFIDFDDRARYGTPRYNNYIAGFSFGLQDQAGMLEFAVDPAVYQWGDESAMLYLNGTIKAPKIDPVFEGNASMTLELPSYDITGELNAKVNIPAKSGLIFKADQKIDYSITSTKTTFKSNQMDAKVFKVVTFTGNFSNERNYRPDGSLISADGVLNGELSYNYKGSYSDTYLNQSFKCNFDFTLSGNLNTTFTDSNFNTQLISVGVSANASLEISTDIGDINPKVSLDANALFKPNQDNWKLETDYKLKIGEGILSYEHEGNYSMDLGEITE
>NZ_CP003560.2|WP_158297743.1|4258728_4259439_+|hypothetical-protein
MNKFLIVILLKCMIVFSSYSQITLQEGQHIFINHGISTMSCFDCNLTFDWIVDMDLNQEEYIESSGNNYMITPETDIKFEFKIMDDNQPDDNTSCSSYGQDYQKEGSCNFCYKFIYNNYSYYCPLNDYNGIYIPEVTSHSHKVKPNCLLLTYSRFLIEEDTPKVGFFENGNKGYFPPDIFKKTDQKFYWLVTKIDGGKEIIKNKEVLSIDDLVDTFSIQVISNDFQSRSLLLSNIL
>NZ_CP003560.2|WP_066211584.1|4258084_4258717_+|hypothetical-protein
MAASCFNCSNTDFGRITQLSTNVVSIASSGRTFMILPSTKIIFYFEIIDNMELQPGGGVSCSEFYGETYSRVCNGNCISVKEDSFTYDAPLSINKTVDLEGFLVTPSTNQGTNCSTLVYTRALIEEDTPRVGFLEDGQKVYFPPNIFKKINENFVWALYNKNGDQEFIENKKYIYFNNLRDIISIQAIAKNIKSKHLLIEKENTQSHLIK
>NZ_CP003560.2|WP_066211582.1|4255858_4257949_+|hypothetical-protein
MLKRIIILYVLLIGFLFSVYGQNEQINPEIKVIGKVTSRENHLRWAPNNSLSWDLLKEYGYKIERITTYRNGKLLANPEKVWLTERILPKPEEEWGRAFDADTSDMYIAVAAQALFGTSFNITSSSTNNSPLASIVHQVKEREARFSYALFGADQSKKVAELSGVSWVDKNITKGERYLYRIYSLVPDSIEVIKTGKVLLNTEDVKPLPEPWNVNAFYRDGQVHVVWNWFMLSDVYNSYWIQRSNDNGANYTDLTDVPFVQPSKDTPSPNMLFVDTLGSLTGDFLYRIKGKDSFGDWGPYSSPFKINVKNNMNFSPNIDVGEDEASGNVKISWEVKENEKIGVQSLLLVRGENDKVFKDTLSKSLPVKTGYFLDIGPGPSNYYKLGALGETGKINWSLVSFYQTIDSIPPEPPIGLIADIDSLGRVDLNWDENIENDLLGYRVYRSNEKNGQYAQVTKKEIKHTSFQDSISIKVLNKKVYYKVLAVDLRGNPSGFSEPLEVTRPDIIPPAAPLIGKTSNTSKGPSFEWYPSASNDVMYHLIYRKGASETENWELIKEYQNPLGKQTFTDSSIVTNQVHYYLMIAVDESGLESIPTKPVGLHLYDNKVRAGVESLKISRIDNGINLDWVSPISEDYYIDIYKSIDDEPIRFYKRIEGLSNKYTDVEVNDGKLYTYRLKVKYKEGGSSNYSSKVQIKF
>NZ_CP003560.2|WP_066211579.1|4251135_4255854_+|hypothetical-protein
MKKAFIILLFIIGITNVLASVDDPISPAESKSSKFKFKKFRSFDVELPKEESLENKENFFNDDKEQPVSKKIANIRGALKKVKENKLFTSVFTEADLISLPVGIPKKVGNTEFIIVIDKVRLTPRGTLIDVGLVIDFPNSDQQLVFGAFDVAFSQERGFGGLGKLALLNNFEVNLSKDIRLNFKGTTNNGQTFVNWGCDGYQDMALDFEVIFNKDLIRPCDLDGNPIPNKEIKVPVTAHIETFDELIVAVNLPRFRMGEDHDRGFIFEASDVVYDQSETRNANIQFPENYHSTDFLEGDTNLWKGFYLRYAEVTMPSDFDKVMYENHSRDKAIEEAEIELTEEQRAEMAKSDSTALANASKNRTSFQVRNLIIDDYGLTANFQGHQLLSLEKGQLGGGWGLSLIKVEVEILKGQFIFANMSGDLQVPITDDNTLLAYVAEIRHGGDFYFFASTRETMPFTPFGDQSELLLHNTMITIELTDGQFYGGIEIDGSMSVKSKDSSVELADIDFQGLLIETRAPYISVVAFSASSEALAQKLSGKNLTINEIGMTARDGNVSLNVDAIISLHSGSEGFGGGGDISIWAKYDDDGWKYNGTTVSKITIEASKKGVYKLKGTIAVLKDDETYGDVFIGVVEAQLGPTVGGSIGMEATVMFGKKGDLNYWYIDCLAILPEPGLTVGTISFQGFGGGLYYGMSKLPSDVVTASDIESATGGVYVPDESVGFGLKAIIIFAIPKKESMIAETSFEMTFNKGGGIRYAMFAGAANIMTPPLPPINPKELVASADNVAKKESDGKSQDLKNTKPEKVSYGCAYLSEENTKVFAKILVEMDFLNNSFHGELSVAINAGAVEGGGTAIVHIEEDSWYLHIGTNENPIRLSFMGGVEASSYFMFGDNLPSGFKAPKEVVQILGKDPSAEIDNSRNESLISDGRGVAFGAAIKFGVPELNFLMFYANINAGLGFDLMVKNYGAGAVCANTGRQIGINGWFAQGQIYAFIKAKIGIEVKLKFIKGRFDIIDAGFAALLQFKGPNPVYAFGIVGGNFNILGGLVKGNCSFEFTLGEQCIIQGASPLGGMEIIASMTPSDKSEDVDVFSAPQVVFNVPVNKSMELLDPNTNQKKSYKINIKKVELNSEKNGNAICNLEWNEDNTTLVLKPESMLENESNYYFQIDLDFREKRGNEWVAVNSDDVLTKALKFKSGKRPEYIDHSRVLVSYPVERMMNLYIDESDKGYLEMEQKGWDYLFEVKDPSKWEVKARFTSYSEEIAYGNISYNDNQKLVSLDIPTEMKTNQIYKMDLVHLPKTSFNVDANVVEEKQNVAIENQNGNDSSIEITKRNSTGEVLESNEEKVFYTSSFRTSQWKTFPEKMKNLNFSEGVTGVLPFSYRYQMSTSFSSKNNETLDQLELSGGKGTDPLVEITADFNDVHYENLITPLMYYEYPLNGAEITWRDNTSNYGWVKPIKGLYFSQNYEGQISLSDDELLSGILTTHVGYTVYYNIDLMIGRDFKDFQASLEDLAADGKLNYANDEIRKRLNFIRVAVMAPRLQLGDYHIISTYTLPGKKTPSSTYKIKMTNNIQ
>NZ_CP003560.2|WP_169055539.1|4249469_4251122_+|hypothetical-protein
MKISGGVSFNQTAYSAWGMESRRDPYRYILSGNLNFDVYGMAIPLSFTYSNQDFNYNQPFNQFTISPSYKWLNFQLGYGNVSFSPYTLGGHTFLGAAVSGSPNDRWDFSVMYGRLREAVIYDEENENGEPSFRRMGYGFKTEYRHKSGNIGVTLFKAKDDPSSYQSDSIPEGFLPQDNLSTSVYFGQEIVNNLTIQSEIGVSILTTNTNAEKTENKGTDWLFNSRTSTSSYWAGNFGLNYQLKTWVLGASYERIGPEYRTLGSYYANNDLETMSLNINGALFNSKVNIGGNFGTQRNNIDGENSSDMSNFNMALNLNWIVSKKVNTSFNYSNFRSYTVIRDQFEVINQSDPLHQFDTLNYTQLTDAGNLSVNWNISGSKKIIQNLNLNLNYQQTSDQQSDQAVNNANSQFWNGALGWNWGNKPLDLRLGFSANGSYSFAGNDIPSTFTAGPTISCTKGFLDKKIKARTSVSMNQSRSDNIVQSTVISWRLGTSTTLKKSHSFNLSSALMNRQRKNEAEDNSITELTVTLTYSYRFSAFNKKEEKTNLNNN
>NZ_CP003560.2|WP_066211573.1|4248855_4249350_+|hypothetical-protein
MTKYKIILFLNFLLLLTTNVFSQVITKGDYYVITKRTNIVKPSHLCVEVIRLGSLPTFHLKNGSTSASHTFDFTTRSGIWQKIPIGDNGIPGHAVPCMPEEDGCTCELNDTEFEISKSFSFTINNPNEDESGVINLVMDYSETIYVEIQLEWYYVNEDKPIAVP
>NZ_CP003560.2|WP_066211571.1|4247329_4248856_+|type-IX-secretion-system-membrane-protein-PorP/SprF
MTEIIRNKNCLGIFILLLVFFSAKTKAQISGYDALREYAPLRLSPAWGGYNTDASIGLLHKSINYGDGVHRSRSIITAALPWINKETKLVQGGGGIYFLNESPSQSIGFKTQEIGGSFAYTIRLNKNHDLAFGLGGSWTSMQLTTDGVTTGSLWHPIYGFIPDAEINEVIHSERNSYLSIYSGLLWSSLDRYNRERHRLGVNIYRMNSPENRSDLSSDNLNMGYSLTASITMWAHPSLSITPDLFYEYADERQFIQGAVWGGYHFYNENPTDPISTGCLAAALSYSNNGSFGLGFKFDQKNYEVAMFNYFGTRSNTISMPNQSSFEVAFRLKNVRGKRRRNKETYYKSTAVSDHSKHYQYRNFNEDREAIVTDSDNIDHLTPNEIEDSEPKSGSEDKPIIYTLQYRFNETRLTRDSQLQLDYTVKLLKDNPDLSIKIIGHSDDLGTPKVKAKIAWERAKQIRDYFWSNGVEKHRVQATSKSDNVPLVDNDTDENRALNRRVELLIFEK
>NZ_CP003560.2|WP_066207775.1|4270055_4270397_+|IS66-family-insertion-sequence-element-accessory-protein-TnpB
MLSLRNTDRIYLYSKFTDMRKGFNGLSNIVISLMELDVTNGDIFVFINRSKDKLKLLRFEKGGFSLYYKRLEKGRFELPKGFDKQKNISLSSTEIMMIIEGVSLEKRGQKVRF
>NZ_CP003560.2|WP_169055540.1|4270421_4271849_+|IS66-family-transposase
MSKDDKIANLEQENAQLKTQLSMLQSMLYGSKSEKRKQADIPDNQLSIFAQDKEQKTEPSQEITVPAHKRKKKKPVRTALPEHLERVEEVIEPDHDLDGWHKVGEDVTEVLECEPARLYVRRIICPRYVRDTHQENSEFSQANLPSDLPFPKSSTSASLAAQMVVSKFIDHIPIHRFIKQFERQGVYLKNTTLIDLQKRTADKLSILYDTLTQKIQQSSYLQIDESTIKVMGTGKKGKPHQGYMWYYLDPKEKLLSIHYASGRDRKYLKEHLHTFSGYAQTDGYKAYDYFDQTTTITQLNCWAHARRYFFEAHKGGDKRALEAVNLIGQLYELEKSLKEESNPKIIYQQRQKYALPVINTLFEWAKKLTALPKSQLGKAIHYLLNREKGLRMYLTDGKLLIDNNPIENKIRPLAIGRKNYMFAGNEEGAKQAAMFYAFFATAKMNDIEPFEWLKSTLEKIDDQPINKIEELLPVK
>NZ_CP003560.2|WP_066211595.1|4272235_4272550_-|YbjQ-family-protein
MIISTTETIPNREISEILGIARGSTVRARSVGSDIFAGLKNLVGGEISEYTKLQADSREQAIQRLMEDADRLGADAVVNIRLTTSTVMQGASEILAYGTAVKLR
>NZ_CP003560.2|WP_066211597.1|4272662_4273151_-|NADH-quinone-oxidoreductase-subunit-C
MTTEEIAQLIQKHVNVEVEANTKQPQHEIIVKNVDIEKVCRFLKSDNRLMFDNLSCLTGIDNGPKANTMEVVYNLYSITKSFRLTLKVMLYRETPVLPSVTSVWKAANWHEREAYDLVGMTFENHPDLRRILSPDDWEGHPLQKDYKEQEKYHGITVKYERD
>NZ_CP003560.2|WP_066211599.1|4273153_4273678_-|NADH-quinone-oxidoreductase-subunit-NuoB
MKGLMDQRFGQGEIVISKVDDLINWARLSSFWPLGFGLACCAIEMITTWSSAYDLDRFGVIPRGTPRQSDAMIISGTVTFKMADRVRRLYEQMAEPRYVISMGSCSNCGGPYWEHGYNVVKGVDRIIPVDVYVPGCPPRPEALIGGILKLREEIRKETLMAPKAVERLLKKQKA
>NZ_CP003560.2|WP_066211602.1|4273759_4274686_-|hydroxymethylbilane-synthase
MVERTIKIGTRKSKLALWQAEYVKSLLEENGLKGELVLIETKGDKILDRSLSKIGSKGVFTEELEDQLRNGDIDIAVHSAKDMQASLGDDFELIAFTEREECHDVFVSHKEDFTVDTEKEFVIGTSSVRRVAMLQKHFPKAKIVDVRGNLQTRIQKMEDGLCDVLMLAYAGVHRMGYDNMIVHSLPLDTFTPATGQGCVAIESATTLDPKVREAVRKAINNVDTETCVRSERAFLKELQGGCSIPAFCLATWTEDKQINITGGLAKPNASEIRYTYTCAPEDGEKMGTQIAKDTLANGGAEVLAELKG
>NZ_CP003560.2|WP_066211604.1|4275114_4275516_+|metalloregulator-ArsR/SmtB-family-transcription-factor
MKLKHFNLSIGTQIMKALGEESRIRIMHLLYENTEMCISDIELVLDFTQTKTSRHLIYMKNAGLLSVRKIDQWSFYSIKEELSGIIETIFKYMERDTQLLEDQETYRILSSNRELAMNKIEKRRMSHHYPEGD
>NZ_CP003560.2|WP_066211605.1|4275529_4276057_+|RNA-methyltransferase
MRKLSMDELNRVSAEEFKSQEKNNIVVVLDNIRSLNNVGSSFRTGDAFAIEKVVLCGITGKPPHRDIHKTALGAQDTVAWEHFDETVDAIKKLKEEGYKVYAVEQVEGSTMLQDLETTKDEKIALVFGNEVMGVSDEAIEEVDAALEIPQFGTKHSLNVSVTIGVVLWQVLQKKM
>NZ_CP003560.2|WP_066211607.1|4276140_4277100_-|hypothetical-protein
MLLTLQTKKQYRNFGLAFGIASLAIQILPLFYAMATKDNVQINIIGRFVISFFGAPTILFFGLALLKSYKEKALFWIGILGVWLTVMLNIYIFKWGEEVYLQNILHDLSRKVMAMILGLLAIRYFIQSKNFIHLIIGFSVIILMTVTNSVLQTYKILPIGDILEQSLLGAMFYVLTLGFGYILFKIFSSKDDAEDDLAEDLFTPFSKAHLVFYFMIIGLYFSDFWKGNIAWQTELNILFMSLFAMIGIIYFSKNIITIGMAITLISLIGRIIAFYQTNSMEATFSIVFSLMILGLFEFSRRANNEEEKALKKRGGRKTT
>NZ_CP003560.2|WP_066211609.1|4277234_4277813_-|non-canonical-purine-NTP-diphosphatase
MDKICFATNNPNKLKEIQRQLEGQYQVVSLKEIGCEEELPETQETLEGNSAQKAQYVWDNYKVSCFADDTGLEINALDGAPGVYSARYAGPQRDSDDNMDLVLKNLEDKADRSARFRTVITLVWNGEVKQVDGIAEGEIITKRTGDDGFGYDPIFRPNGYDKTFAQISADEKNKISHRGKAVEKLITLLKNL

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Identity
NZ_CP003560_3	3.1\|4269691\|46\|NZ_CP003560\|CRISPRCasFinder	4269691-4269736	46	NZ_CP003561.2	650685-650730	1.0
NZ_CP003560_3	3.1\|4269691\|46\|NZ_CP003560\|CRISPRCasFinder	4269691-4269736	46	NZ_CP003561.2	795399-795444	1.0
NZ_CP003560_3	3.1\|4269691\|46\|NZ_CP003560\|CRISPRCasFinder	4269691-4269736	46	NZ_CP003561.2	473548-473593	1.0
NZ_CP003560_3	3.1\|4269691\|46\|NZ_CP003560\|CRISPRCasFinder	4269691-4269736	46	NZ_CP003561.2	477259-477304	1.0
NZ_CP003560_3	3.1\|4269691\|46\|NZ_CP003560\|CRISPRCasFinder	4269691-4269736	46	NZ_CP003561.2	569067-569112	1.0
NZ_CP003560_3	3.1\|4269691\|46\|NZ_CP003560\|CRISPRCasFinder	4269691-4269736	46	NZ_CP003561.2	1749610-1749655	1.0
NZ_CP003560_3	3.1\|4269691\|46\|NZ_CP003560\|CRISPRCasFinder	4269691-4269736	46	NZ_CP003560.2	1490288-1490333	1.0
NZ_CP003560_3	3.1\|4269691\|46\|NZ_CP003560\|CRISPRCasFinder	4269691-4269736	46	NZ_CP003560.2	2820486-2820531	1.0
NZ_CP003560_3	3.1\|4269691\|46\|NZ_CP003560\|CRISPRCasFinder	4269691-4269736	46	NZ_CP003560.2	1149717-1149762	1.0

1. spacer 3.1|4269691|46|NZ_CP003560|CRISPRCasFinder matches to position: 650685-650730, mismatch: 0, identity: 1.0

gtaagcagtcgcccatccccatctattatgcctcaaattcctgact	CRISPR spacer
gtaagcagtcgcccatccccatctattatgcctcaaattcctgact	Protospacer
**********************************************

2. spacer 3.1|4269691|46|NZ_CP003560|CRISPRCasFinder matches to position: 795399-795444, mismatch: 0, identity: 1.0

gtaagcagtcgcccatccccatctattatgcctcaaattcctgact	CRISPR spacer
gtaagcagtcgcccatccccatctattatgcctcaaattcctgact	Protospacer
**********************************************

3. spacer 3.1|4269691|46|NZ_CP003560|CRISPRCasFinder matches to position: 473548-473593, mismatch: 0, identity: 1.0

gtaagcagtcgcccatccccatctattatgcctcaaattcctgact	CRISPR spacer
gtaagcagtcgcccatccccatctattatgcctcaaattcctgact	Protospacer
**********************************************

4. spacer 3.1|4269691|46|NZ_CP003560|CRISPRCasFinder matches to position: 477259-477304, mismatch: 0, identity: 1.0

gtaagcagtcgcccatccccatctattatgcctcaaattcctgact	CRISPR spacer
gtaagcagtcgcccatccccatctattatgcctcaaattcctgact	Protospacer
**********************************************

5. spacer 3.1|4269691|46|NZ_CP003560|CRISPRCasFinder matches to position: 569067-569112, mismatch: 0, identity: 1.0

gtaagcagtcgcccatccccatctattatgcctcaaattcctgact	CRISPR spacer
gtaagcagtcgcccatccccatctattatgcctcaaattcctgact	Protospacer
**********************************************

6. spacer 3.1|4269691|46|NZ_CP003560|CRISPRCasFinder matches to position: 1749610-1749655, mismatch: 0, identity: 1.0

gtaagcagtcgcccatccccatctattatgcctcaaattcctgact	CRISPR spacer
gtaagcagtcgcccatccccatctattatgcctcaaattcctgact	Protospacer
**********************************************

7. spacer 3.1|4269691|46|NZ_CP003560|CRISPRCasFinder matches to position: 1490288-1490333, mismatch: 0, identity: 1.0

gtaagcagtcgcccatccccatctattatgcctcaaattcctgact	CRISPR spacer
gtaagcagtcgcccatccccatctattatgcctcaaattcctgact	Protospacer
**********************************************

8. spacer 3.1|4269691|46|NZ_CP003560|CRISPRCasFinder matches to position: 2820486-2820531, mismatch: 0, identity: 1.0

gtaagcagtcgcccatccccatctattatgcctcaaattcctgact	CRISPR spacer
gtaagcagtcgcccatccccatctattatgcctcaaattcctgact	Protospacer
**********************************************

9. spacer 3.1|4269691|46|NZ_CP003560|CRISPRCasFinder matches to position: 1149717-1149762, mismatch: 0, identity: 1.0

gtaagcagtcgcccatccccatctattatgcctcaaattcctgact	CRISPR spacer
gtaagcagtcgcccatccccatctattatgcctcaaattcctgact	Protospacer
**********************************************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP003560_3	3.1\|4269691\|46\|NZ_CP003560\|CRISPRCasFinder	4269691-4269736	46	NZ_CP003562	Flammeovirga sp. MY04 plasmid unnamed, complete sequence	82869-82913	1	0.978

1. spacer 3.1|4269691|46|NZ_CP003560|CRISPRCasFinder matches to NZ_CP003562 (Flammeovirga sp. MY04 plasmid unnamed, complete sequence) position: , mismatch: 1, identity: 0.978

gtaagcagtcgcccatccccatctattatgcctcaaattcctgact	CRISPR spacer
-taagcagtcgcccatccccatctattatgcctcaaattcctgact	Protospacer
 *********************************************

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

2773194 : 2819800

unidentified_phage(14.29%)

protease,holin,transposase,terminase,tail,head

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_066209724.1\|2773194_2774691_-\|terminase	phage terminase large subunit	H7BVH1	unidentified_phage	3.2e-61	33.0
WP_066209725.1\|2774680_2775136_-	hypothetical protein	NA	NA	NA	NA
WP_084005846.1\|2775258_2776155_+\|head,protease	HK97 family phage prohead protease	NA	NA	NA	NA
WP_066209729.1\|2776157_2777021_+	hypothetical protein	NA	NA	NA	NA
WP_066209732.1\|2777242_2777485_+	hypothetical protein	NA	NA	NA	NA
WP_066209735.1\|2777490_2778702_+	hypothetical protein	NA	NA	NA	NA
WP_066209737.1\|2778706_2779120_+	hypothetical protein	NA	NA	NA	NA
WP_066209738.1\|2779122_2779677_+	hypothetical protein	NA	NA	NA	NA
WP_066209740.1\|2779843_2781766_+\|tail	phage tail tape measure protein	F8UBC8	Clostridium_phage	1.1e-16	31.2
WP_066209742.1\|2781758_2782352_+	hypothetical protein	NA	NA	NA	NA
WP_066209744.1\|2782348_2783332_+	hypothetical protein	NA	NA	NA	NA
WP_066209746.1\|2783332_2783899_+	hypothetical protein	NA	NA	NA	NA
WP_066209747.1\|2783899_2784184_+	hypothetical protein	NA	NA	NA	NA
WP_066209748.1\|2784180_2784630_+	hypothetical protein	R9ZVQ5	Cellulophaga_phage	6.6e-18	41.1
WP_066209749.1\|2784632_2785049_+	M15 family metallopeptidase	A0A173H0V8	Pseudoalteromonas_phage	3.9e-17	37.8
WP_066209751.1\|2785059_2785890_+	hypothetical protein	H7BUK7	unidentified_phage	4.3e-15	22.6
WP_066209753.1\|2785882_2786371_+	hypothetical protein	NA	NA	NA	NA
WP_066209755.1\|2786367_2787378_+	hypothetical protein	Q5ZGD2	Flavobacterium_phage	2.2e-05	41.3
WP_066209757.1\|2787381_2790159_+	hypothetical protein	NA	NA	NA	NA
WP_066209758.1\|2790200_2791370_+	hypothetical protein	NA	NA	NA	NA
WP_158297665.1\|2791900_2793739_+	anaerobic ribonucleoside-triphosphate reductase	A0A0A8WEK0	Clostridium_phage	3.0e-93	33.3
WP_066209762.1\|2793792_2795655_-	PAS domain S-box protein	A0A1V0SGX0	Hokovirus	2.2e-14	29.1
WP_066209764.1\|2795776_2796385_-	hypothetical protein	NA	NA	NA	NA
WP_066209765.1\|2796389_2798357_-	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA
WP_084005847.1\|2798599_2802133_-	caspase family protein	NA	NA	NA	NA
WP_066209769.1\|2802399_2802810_+\|holin	phage holin family protein	NA	NA	NA	NA
WP_066209770.1\|2802813_2803260_+	hypothetical protein	NA	NA	NA	NA
WP_066209772.1\|2803390_2803627_+	acyl carrier protein	B2ZXV3	Ralstonia_phage	5.5e-08	41.3
WP_066209774.1\|2803755_2805009_+	beta-ketoacyl-ACP synthase II	NA	NA	NA	NA
WP_066209776.1\|2805285_2806029_+	ribonuclease III	M1PMQ4	Moumouvirus	1.2e-29	36.9
WP_084005848.1\|2806255_2806876_+	C40 family peptidase	A0A1V0DZX6	Clostridioides_phage	1.6e-14	40.8
WP_066209779.1\|2806886_2807444_+	C40 family peptidase	NA	NA	NA	NA
WP_066209780.1\|2807834_2809700_+	type IIA DNA topoisomerase subunit B	A0A172JHT4	Bacillus_phage	6.9e-69	31.5
WP_066209782.1\|2809836_2810670_+	alpha/beta fold hydrolase	NA	NA	NA	NA
WP_084005850.1\|2810675_2811281_+	YigZ family protein	A0A1X9I5T8	Streptococcus_phage	9.1e-23	36.3
WP_066209786.1\|2811282_2812086_+	EI24 domain-containing protein	NA	NA	NA	NA
WP_066209788.1\|2812063_2812930_+	hypothetical protein	NA	NA	NA	NA
WP_084005851.1\|2812979_2813564_-	phosphatase PAP2 family protein	NA	NA	NA	NA
WP_066209790.1\|2813573_2815196_-	glycosyltransferase family 39 protein	NA	NA	NA	NA
WP_066209792.1\|2815572_2818362_-	T9SS type A sorting domain-containing protein	NA	NA	NA	NA
WP_158297804.1\|2818373_2819222_-\|transposase	IS66 family transposase	A0A218MNE7	uncultured_virus	1.6e-36	33.7
WP_066209796.1\|2819218_2819800_-\|transposase	IS66 family transposase zinc-finger binding domain-containing protein	NA	NA	NA	NA

DBSCAN-SWA_2

3599294 : 3608923

Tupanvirus(22.22%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_066210648.1\|3599294_3599972_-	pseudaminic acid cytidylyltransferase	A0A1B1IVD3	uncultured_Mediterranean_phage	2.4e-08	36.8
WP_066210650.1\|3599968_3601117_-	UDP-4-amino-4, 6-dideoxy-N-acetyl-beta-L-altrosamine transaminase	A0A2K9L0G1	Tupanvirus	4.3e-37	31.1
WP_066210652.1\|3601129_3602143_-	UDP-N-acetylglucosamine 4,6-dehydratase (inverting)	A0A1V0SAI8	Catovirus	4.1e-44	37.9
WP_066210654.1\|3602155_3603163_-	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	6.3e-77	47.6
WP_066210655.1\|3603215_3604073_-	dTDP-4-dehydrorhamnose reductase	A0A291LA50	Escherichia_phage	4.4e-47	42.8
WP_066210657.1\|3604069_3604618_-	dTDP-4-dehydrorhamnose 3,5-epimerase	A0A291LA62	Escherichia_phage	2.2e-39	46.4
WP_066210659.1\|3604627_3605488_-	glucose-1-phosphate thymidylyltransferase RfbA	H9NC64	Sphingomonas_phage	1.2e-95	61.5
WP_066210660.1\|3605566_3606598_-	hypothetical protein	NA	NA	NA	NA
WP_066210662.1\|3606673_3607651_-	SDR family oxidoreductase	A0A2K9L0I7	Tupanvirus	1.3e-82	49.2
WP_066210663.1\|3607657_3608923_-	nucleotide sugar dehydrogenase	M1I178	Paramecium_bursaria_Chlorella_virus	1.3e-23	26.7

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

3. NZ_CP003561

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1210781 : 1250914

uncultured_phage(33.33%)

plate,tail,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_066215298.1\|1210781_1211309_-\|tail	phage tail protein	NA	NA	NA	NA
WP_066215300.1\|1211311_1211695_-	GPW/gp25 family protein	NA	NA	NA	NA
WP_066215302.1\|1211706_1212441_-	hypothetical protein	NA	NA	NA	NA
WP_158297903.1\|1212443_1213529_-	hypothetical protein	NA	NA	NA	NA
WP_066215305.1\|1213540_1214164_-	hypothetical protein	NA	NA	NA	NA
WP_066215306.1\|1214168_1214672_-	hypothetical protein	NA	NA	NA	NA
WP_066215308.1\|1214676_1214946_-	hypothetical protein	NA	NA	NA	NA
WP_066215310.1\|1214954_1216736_-	hypothetical protein	NA	NA	NA	NA
WP_066215312.1\|1216748_1216952_-	hypothetical protein	NA	NA	NA	NA
WP_066215314.1\|1216953_1218807_-	hypothetical protein	NA	NA	NA	NA
WP_066215316.1\|1218821_1222364_-\|plate	baseplate J/gp47 family protein	NA	NA	NA	NA
WP_066215318.1\|1222375_1225438_-	hypothetical protein	NA	NA	NA	NA
WP_158297904.1\|1225439_1226570_-	hypothetical protein	NA	NA	NA	NA
WP_066215322.1\|1226583_1229601_-	hypothetical protein	NA	NA	NA	NA
WP_066215324.1\|1229615_1232288_-	hypothetical protein	NA	NA	NA	NA
WP_066215326.1\|1232287_1232467_-	hypothetical protein	NA	NA	NA	NA
WP_066215328.1\|1232562_1233024_-\|tail	phage tail protein	T2KTT5	uncultured_phage	1.0e-18	46.0
WP_066215332.1\|1233043_1234528_-\|tail	phage tail sheath family protein	J9PVC2	Bacillus_phage	7.2e-21	36.3
WP_066215335.1\|1234657_1235515_-	hypothetical protein	NA	NA	NA	NA
WP_066215337.1\|1235529_1236048_-	DUF4255 domain-containing protein	NA	NA	NA	NA
WP_066215339.1\|1236117_1240812_-	T9SS type A sorting domain-containing protein	NA	NA	NA	NA
WP_066215341.1\|1240859_1242671_-	hypothetical protein	NA	NA	NA	NA
WP_066215343.1\|1243238_1244927_+	AAA family ATPase	NA	NA	NA	NA
WP_066215345.1\|1245013_1246171_-	TIR-NBS-LRR class disease resistance protein	NA	NA	NA	NA
WP_066215347.1\|1246427_1247597_+\|transposase	IS4 family transposase	NA	NA	NA	NA
WP_158297905.1\|1247831_1248821_+	hypothetical protein	NA	NA	NA	NA
WP_066207778.1\|1248833_1249121_+	hypothetical protein	NA	NA	NA	NA
WP_066207003.1\|1249120_1249462_+	IS66 family insertion sequence element accessory protein TnpB	NA	NA	NA	NA
WP_066215351.1\|1249486_1250914_+\|transposase	IS66 family transposase	A0A218MNE7	uncultured_virus	7.6e-52	31.5

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP003562

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP003560

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

3. NZ_CP003561

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection