CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP012706	Bacteroides fragilis strain S14 chromosome, complete genome	5 crisprs	DEDDh,cas6,cmr1gr7,cas10,cmr3gr5,cmr4gr7,cmr5gr11,cmr6gr7,cas1,cas2,PrimPol,WYL,cas3,cas9	0	20	2	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP012706_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP012706_1

234152-234297

Orphan

Consensus_repeat	Method
GAAATTCCCAATATATTGTGAATTTGA	PILER-CR

2 spacers

The CRISPR arrays of NZ_CP012706_1

>merge|NZ_CP012706|1|234152-234297|PILER-CR
ATTCCCAATATATTGTGAATTTGAAACAAAAATACTAAGTATTTGTTTGATAAGCAAGGAAATTCCCAATATATTGTGAATTTGAGCTTTTTGTGGCTTGAGTTATGTACCTTCATCATGAAATTCCCAATATATTGTGAATTTGA

>NZ_CP012706|1|1|234152-234297|PILER-CR
ATTCCCAATATATTGTGAATTTGAAAC	AAAAATACTAAGTATTTGTTTGATAAGCAAGGAA
ATTCCCAATATATTGTGAATTTGAGCT	TTTTGTGGCTTGAGTTATGTACCTTCATCATGAA
ATTCCCAATATATTGTGAATTTGA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP012706.1\|WP_010992159.1\|230424_231672_+\|mechanosensitive-ion-channel-family-protein	unknown	unknown	gnl\|CDD\|366370
NZ_CP012706.1\|WP_005784907.1\|233612_233942_-\|phosphatidylinositol-kinase	unknown	unknown	gnl\|CDD\|274416
NZ_CP012706.1\|WP_005801381.1\|237605_238094_+\|transcriptional-regulator	unknown	unknown	gnl\|CDD\|336454
NZ_CP012706.1\|WP_032560798.1\|235655_236003_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|371293
NZ_CP012706.1\|WP_005775503.1\|231713_232607_+\|AraC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225117
NZ_CP012706.1\|WP_005784891.1\|226462_227554_+\|methylmalonyl-Co-A-mutase-associated-GTPase-MeaB	unknown	unknown	gnl\|CDD\|236515
NZ_CP012706.1\|WP_014298564.1\|239839_241177_+\|nucleotide-sugar-dehydrogenase	unknown	unknown	gnl\|CDD\|185017
NZ_CP012706.1\|WP_005795239.1\|242704_243229_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|224584
NZ_CP012706.1\|WP_032573616.1\|236102_236333_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP012706.1\|WP_005796193.1\|225365_226454_+\|DUF1573-domain-containing-protein	unknown	unknown	gnl\|CDD\|377880
NZ_CP012706.1\|WP_025813667.1\|241181_242240_+\|NAD-dependent-epimerase/dehydratase-family-protein	unknown	unknown	gnl\|CDD\|187563
NZ_CP012706.1\|WP_011202139.1\|236346_236538_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP012706.1\|WP_080689815.1\|232609_233449_-\|HipA-domain-containing-protein	unknown	unknown	gnl\|CDD\|377920
NZ_CP012706.1\|WP_005784896.1\|228587_229415_+\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|379114
NZ_CP012706.1\|WP_005784914.1\|237049_237586_+\|capsular-polysaccharide-transcription-antiterminator-UpgY	unknown	unknown	gnl\|CDD\|193584
NZ_CP012706.1\|WP_065344287.1\|238258_239149_+\|glucose-1-phosphate-thymidylyltransferase-RfbA	unknown	unknown	gnl\|CDD\|130274
NZ_CP012706.1\|WP_005818358.1\|233938_234151_-\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|213767
NZ_CP012706.1\|WP_005784898.1\|229436_230453_+\|DUF4435-domain-containing-protein	unknown	unknown	gnl\|CDD\|373095
NZ_CP012706.1\|WP_005801389.1\|227585_228494_-\|DMT-family-transporter	unknown	unknown	gnl\|CDD\|223769
NZ_CP012706.1\|WP_065344286.1\|234640_235513_-\|DUF4373-domain-containing-protein	unknown	unknown	gnl\|CDD\|379546

Protein	Function_ID	Function_description	E-value
NZ_CP012706.1\|WP_010992159.1\|230424_231672_+\|mechanosensitive-ion-channel-family-protein	gnl\|CDD\|366370	pfam00924, MS_channel, Mechanosensitive ion channel. Two members of this protein family of M. jannaschii have been functionally characterized. Both proteins form mechanosensitive (MS) ion channels upon reconstitution into liposomes and functional examination by the patch-clamp technique. Therefore this family are likely to also be MS channel proteins.	4.024e-25
NZ_CP012706.1\|WP_005784907.1\|233612_233942_-\|phosphatidylinositol-kinase	gnl\|CDD\|274416	TIGR03071, couple_hipA, HipA N-terminal domain. Although Pfam models pfam07805 and pfam07804 currently are called HipA-like N-terminal domain and HipA-like C-terminal domain, respectively, those models hit the central and C-terminal regions of E. coli HipA but not the N-terminal region. This model hits the N-terminal region of HipA and its homologs, and also identifies proteins that lack match regions for pfam07804 and pfam07805.	2.91978e-46
NZ_CP012706.1\|WP_005801381.1\|237605_238094_+\|transcriptional-regulator	gnl\|CDD\|336454	pfam06603, UpxZ, UpxZ family of transcription anti-terminator antagonists. The UpxZ family of proteins acts to inhibit transcription of heterologous capsular polysaccharide loci in Bacteroides species by interfering with the action of the UpxY family of transcription anti-terminators. As antagonists of polysaccharide locus-specific UpxY transcription anti-terminators, the UpxZ proteins exert a hierarchical level of regulation, insuring that only one of the multiple phase-variable capsular polysaccharide loci per cell characteristic of this genus is transcribed at a time.	1.90576e-60
NZ_CP012706.1\|WP_032560798.1\|235655_236003_-\|hypothetical-protein	gnl\|CDD\|371293	pfam10902, WYL_2, WYL_2, Sm-like SH3 beta-barrel fold. WYL_2 is a family of Sm-like SH3 beta-barrel fold containing domains. WYL is named for three conserved amino acids found in a subset of domains of this superfamily. These residues are not strongly conserved throughout the family. Rather, the conservation pattern includes four basic residues and a position often occupied by a cysteine, which are predicted to line a ligand-binding groove typical of the Sm-like SH3 beta-barrels. It is predicted to be a ligand-sensing domain that could bind negatively charged ligands, such as nucleotides or nucleic acid fragments, to regulate CRISPR-Cas and other defense systems such as the abortive infection AbiG system.	2.77436e-28
NZ_CP012706.1\|WP_005775503.1\|231713_232607_+\|AraC-family-transcriptional-regulator	gnl\|CDD\|225117	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription].	1.24557e-30
NZ_CP012706.1\|WP_005784891.1\|226462_227554_+\|methylmalonyl-Co-A-mutase-associated-GTPase-MeaB	gnl\|CDD\|236515	PRK09435, PRK09435, methylmalonyl Co-A mutase-associated GTPase MeaB.	0
NZ_CP012706.1\|WP_014298564.1\|239839_241177_+\|nucleotide-sugar-dehydrogenase	gnl\|CDD\|185017	PRK15057, PRK15057, UDP-glucose 6-dehydrogenase; Provisional.	1.44687e-172
NZ_CP012706.1\|WP_005795239.1\|242704_243229_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|224584	COG1670, RimL, Acetyltransferases, including N-acetylases of ribosomal proteins [Translation, ribosomal structure and biogenesis].	1.57484e-07
NZ_CP012706.1\|WP_005796193.1\|225365_226454_+\|DUF1573-domain-containing-protein	gnl\|CDD\|377880	pfam07610, DUF1573, Protein of unknown function (DUF1573). These hypothetical proteins, from bacteria such as Rhodopirellula baltica, Bacteroides thetaiotaomicron, and Porphyromonas gingivalis, share a region of conserved sequence towards their N-termini.	2.33736e-42
NZ_CP012706.1\|WP_025813667.1\|241181_242240_+\|NAD-dependent-epimerase/dehydratase-family-protein	gnl\|CDD\|187563	cd05253, UDP_GE_SDE_e, UDP glucuronic acid epimerase, extended (e) SDRs. This subgroup contains UDP-D-glucuronic acid 4-epimerase, an extended SDR, which catalyzes the conversion of UDP-alpha-D-glucuronic acid to UDP-alpha-D-galacturonic acid. This group has the SDR's canonical catalytic tetrad and the TGxxGxxG NAD-binding motif of the extended SDRs. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.	5.96909e-164
NZ_CP012706.1\|WP_080689815.1\|232609_233449_-\|HipA-domain-containing-protein	gnl\|CDD\|377920	pfam07804, HipA_C, HipA-like C-terminal domain. The members of this family are similar to a region close to the C-terminus of the HipA protein expressed by various bacterial species. This protein is known to be involved in high-frequency persistence to the lethal effects of inhibition of either DNA or peptidoglycan synthesis. When expressed alone, it is toxic to bacterial cells, but it is usually tightly associated with HipB, and the HipA-HipB complex may be involved in autoregulation of the hip operon. The hip proteins may be involved in cell division control and may interact with cell division genes or their products.	1.01145e-45
NZ_CP012706.1\|WP_005784896.1\|228587_229415_+\|AAA-family-ATPase	gnl\|CDD\|379114	pfam13304, AAA_21, AAA domain, putative AbiEii toxin, Type IV TA system. Several members are annotated as being of the abortive phage resistance system, in which case the family would be acting as the toxin for a type IV toxin-antitoxin resistance system.	1.54531e-12
NZ_CP012706.1\|WP_005784914.1\|237049_237586_+\|capsular-polysaccharide-transcription-antiterminator-UpgY	gnl\|CDD\|193584	cd09895, NGN_SP_UpxY, N-Utilization Substance G (NusG) N-terminal domain in the NusG Specialized Paralog (SP), UpxY. The N-Utilization Substance G (NusG) proteins are involved in transcription elongation and termination. NusG is essential in Escherichia coli and is associated with RNA polymerase elongation and Rho-termination. Paralogs of eubacterial NusG, NusG SP (Specialized Paralog of NusG), are more diverse and often found as the first ORF in operons encoding secreted proteins and LPS (lipopolysaccharide) biosynthesis genes. NusG SP family members are operon-specific transcriptional antitermination factors. UpxY proteins, UpxY proteins, where the x is replaced by the letter designation of the specific polysaccharide (UpaY to UphY), are a family of NusG SP factors that act specifically in transcriptional antitermination of operons from which they are encoded. UpxYs are necessary and specific for transcription regulation of the polysaccharide biosynthesis operon. Orthologs of the NusG gene exist in all bacteria, but their functions and requirements are different. The NusG N-terminal (NGN) domain is similar in all NusG orthologs, but its C-terminal domain and the linker that separate these two domains are different. The domain organization of NusG and its orthologs suggests that the common properties of NusG and its orthologs and paralogs are due to their similar NGN domains.	8.4586e-29
NZ_CP012706.1\|WP_065344287.1\|238258_239149_+\|glucose-1-phosphate-thymidylyltransferase-RfbA	gnl\|CDD\|130274	TIGR01207, Glucose-1-phosphate_thymidylyltransferase_1, glucose-1-phosphate thymidylyltransferase, short form. Alternate name: dTDP-D-glucose synthase homotetramer This model describes a tightly conserved but broadly distributed subfamily (here designated as short form) of known and putative bacterial glucose-1-phosphate thymidylyltransferases. It is well characterized in several species as the first of four enzymes involved in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme. [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides].	9.17788e-180
NZ_CP012706.1\|WP_005818358.1\|233938_234151_-\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|213767	TIGR03070, couple_hipB, transcriptional regulator, y4mF family. Members of this family belong to a clade of helix-turn-helix DNA-binding proteins, among the larger family pfam01381 (HTH_3; Helix-turn-helix). Members are similar in sequence to the HipB protein of E. coli. Genes for members of the seed alignment for this protein family were found to be closely linked to genes encoding proteins related to HipA. The HibBA operon appears to have some features in common with toxin-antitoxin post-segregational killing systems. [Regulatory functions, DNA interactions].	2.16064e-19
NZ_CP012706.1\|WP_005784898.1\|229436_230453_+\|DUF4435-domain-containing-protein	gnl\|CDD\|373095	pfam14491, DUF4435, Protein of unknown function (DUF4435). This presumed domain is functionally uncharacterized. This domain is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 285 and 362 amino acids in length. This domain is sometimes associated with AAA domains.	3.35851e-66
NZ_CP012706.1\|WP_005801389.1\|227585_228494_-\|DMT-family-transporter	gnl\|CDD\|223769	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only].	2.55403e-13
NZ_CP012706.1\|WP_065344286.1\|234640_235513_-\|DUF4373-domain-containing-protein	gnl\|CDD\|379546	pfam14297, DUF4373, Domain of unknown function (DUF4373). This domain is found in bacteria, eukaryotes and viruses, and is approximately 90 amino acids in length.	4.09312e-31

>NZ_CP012706.1|WP_005818358.1|233938_234151_-|helix-turn-helix-transcriptional-regulator
MKQIGIQIRQRRKMLGINQQTLADLAQISINTITKIENGEININFQKLYAILEVLGLELSLKIKNKEGHL
>NZ_CP012706.1|WP_005784907.1|233612_233942_-|phosphatidylinositol-kinase
MRQGVVYLNKERVGIITELSSNEYKFRYDDEYFNDPSKPSISLTLTKQQQEYTSHYLFPFFANMLSEGHNRIVQARLLQIDEKDDFGILLATAHTDTAGAVTIKPLDYD
>NZ_CP012706.1|WP_080689815.1|232609_233449_-|HipA-domain-containing-protein
MSISGAQQKYSLVVDNGQMRLSLEQEQATLLLKTKLSEYANKEISPANEHLTMQIASQVYNIPTAANGLCFFQNDEPAYITRRFDIAPNGRKFRKEDFASLAGISKGNKGPNYKYDVLSYEEMADIIKQYVSASSVEVLKFFRLVIFNFLFSNGDAHAKNFSLLETPSGDFILAPAYDLLNTRLHIFDDHVFALQRGLFKENTLNGNDGAVTGKEFIEFGIRIGIPPKRVHKELISFCQKAEQVQDLVEKSFLPNQLKKQYLLHYQMRKDSYLSVGILT
>NZ_CP012706.1|WP_005775503.1|231713_232607_+|AraC-family-transcriptional-regulator
MNALQSNIIREITPLSDKDCFYIAERYKTEFTYPIHNHAEFELNFTEKAAGVRRIVGDSAEVISDYDLVLITGKDLEHVWEQHDCHSKEIREITIQFSSDLFFKSFINKNQFDSIRDMLEKAQKGLCFPMSAILKIYPLLDTLASEKQGFYAVIKFLTILYELSLFNEEARTLSSSSFAKIGIHSDSRRVQKVQEYINAHYQEEIRLNQLADMVGMTPVSFSRFFKLRTGKNLSDYIIDIRLGFAARLLVDSTMSIAEICYECGFNNLSNFNRIFKKKKECSPKEFRENYRKKKKLV
>NZ_CP012706.1|WP_010992159.1|230424_231672_+|mechanosensitive-ion-channel-family-protein
MEQITEKINDLFVSWGFDSSEVGPIMTLVLIIGIAFLADLICRNILLRVVAKLVKKTKATWDDIVFDRKVLIYLSHLVPPIIIYVLIPLAIPNVSALDFIRRICMIYIIAVFLRFISAFLSAVYHVYSEREQFRDRPLKGLLQTAQVILFFIGGIVVISVLIDKSPMVLLTGLGASAAILMLVFKDSIMGFVSGIQLSANNMLKVGDWIAMPKYGADGTVIEVTLNTVKVRNWDNTITTIPPYLLVSDSFQNWRGMQESGGRRVKRSINIDMNSVRFCTSEMLAKYKKIQLLTDYVEQTEQVVKEYNKEHHIDNSILVNGRRQTNLGVFRAYLTNYLKSLPDVNKNLTCMVRYLQPTEQGIPVELYFFSAVKEWVPYEGIQADVFDHLLAIVPEFGLRVFQNPTGEDFREWNRRN
>NZ_CP012706.1|WP_005784898.1|229436_230453_+|DUF4435-domain-containing-protein
MAISLKDNLTSSYFNAAHKLYSKKARRRIVAYVESYDDVAFWRTLLEEFEDEEHYFQVMLPSATSLAKGKKMVLMNTLNTAELGKSLIACVDSDYDFLLQGATATSRKINRNRYIFQTYAYAIENYHCYADSLHEVCVQATLNDRHLIDFNEFMKRYSQIAYPLFLWSVWFYRRHDTYTFTMSEFNACVRLHDVSLRHPERSLEAVRRSVTSKLSELSTRFPQGIEEVDKLSVELKGLGVLPDTTYLFIQGHHIMDNVVMKVLTPVCTALRREREQEIKKLAEHDEQFHNELTCYQNSQVNVEVMLRKNSAYKDLYLYQWLKEDIKEFLYGTDNRKNK
>NZ_CP012706.1|WP_005784896.1|228587_229415_+|AAA-family-ATPase
MELSANYIKRIEIDGLWDRFNIVWDLRPDVNILSGINGVGKTTILNRSVGYLEQLSGEVKSDEKNGVHIFFDNPEATYIPYDVIRSYDRPLIMGDFTARMADKNVKSELDWQLYLLQRRYLDYQVNIGNKMIELLSSNNEEERSKAATLSIAKRRFQDMVDELFSYTRKKIDRRRNDIAFYQDGELLFPYKLSSGEKQMLVILLTVLVQDNAHCVLFMDEPEASLHIEWQQKLISMIRELNPNVQIILTTHSPAVIMEGWLDAVTEVSDIATSYK
>NZ_CP012706.1|WP_005801389.1|227585_228494_-|DMT-family-transporter
MEIDKNLKGHALAFTANMMWGLMSPIGKSALAEFSALSVTTFRMVGAAAAFWILSAFCKQEQVGHRDMVKIFFASLFALVFNQGIFIFGLSLTSPIDASIVTTTSPIITMIVAAIYLKEPVTNKKVLGIFIGAMGALILILSSQAVSAGGGSIWGDLLCMIAQLSFSIYLTVFKGLSQRYSAITINKWMFIYASICYIPFSYQDIASIKWDSISTAAIYQVLYVVLCGSFIAYICIMTAQKLMRPTVVSMYNYVQPIVASIAAILMGIGSFGWEKGVAIALVFLGVYFVTQSKSKADLEGVS
>NZ_CP012706.1|WP_005784891.1|226462_227554_+|methylmalonyl-Co-A-mutase-associated-GTPase-MeaB
MEHPENNEAYKGLVVNAGIEQPSSVNPYLKRKVKKRQLSVSEFVEGIVKGDVTILSQAVTLVESVRPEHQATAQEVIEKCLPYSGNSIRVGISGVPGAGKSTSIDVFGLHVLEKGGKLAVLAIDPSSERSKGSILGDKTRMEQLSVHPKSFIRPSPSAGSLGGVARKTRETIILCEAAGFDKIFVETVGVGQSETAVHSMVDFFLLIQLAGTGDELQGIKRGIMEMADGIVINKADGSNIDKAKLAAAQFRNALHLFPAPDSGWTPRVLTYSGFYNLGVKEIWDMVYEYIDFVKGNGYFEYRRNEQSKYWMYESINEQLRDSFYHNAKIESMLQEKEQQVLRGNLTSFVAAKSLLDTYFEDLK
>NZ_CP012706.1|WP_005796193.1|225365_226454_+|DUF1573-domain-containing-protein
MKRSLLFIFTLLTITLSAVAQPRISSNKETHHFGQIEWKRPVSVEYTITNTGDKPLVLTNVTTSCACSVANWTKTPIAPGEKGTVSATFDAKALGHFNKSIGIYSNAQPSLVYLNFDGEVVQEIKDFTKTHPYAIGQIRIDRTDIDFPDAHSGEKPVITLGVVNLSDRPYEPVLMHLPPYLKMETNPTVLLKGKKGTITLTLDTKQLMDLGLTQSSVYLARFAGDKVGEENEIPVSAVLLPDFSGMTEQDKAVAPVIRLSESKIDLSQVLAKKNKARRDIVITNTGKSPLQISKLQVFNPAVGVALKKTVLQPGESTRLRVTVLKKNLGKKKRHLRILMITNDPVQPKVEIDVKATNNESHN
>NZ_CP012706.1|WP_065344286.1|234640_235513_-|DUF4373-domain-containing-protein
MAIAYDGINYFPVGVNFMEENAMEVIEAKYGIKGSAIVLKLMCKIYKEGYYIRWDEEQCLIFANKAGREVQAEEVQGIIEILFTKGILDRNSYQENGILTSESIQKVWMEATKRRKRELSELPYLMVKPEKENGKADTPPALQEIQQPELFKKEKTPVNPKNVVHHVAVDAKNACNSGQSKVKENKAEENKEFPPSAPPKGEGEERKGDSAYLPIPGYAFNTMTHNYSGLMDTLKRLSITDTGEVNSILRLSDYGRKGTTVWKLIANTCWSDIGAKGRYLVAALNKTKRR
>NZ_CP012706.1|WP_032560798.1|235655_236003_-|hypothetical-protein
MKKLKSPASQSEAMKLRWKKRIVFEKGYTESCAEWMAERLEALLDHMQYGHATVAYRKQNGSFQLVKATLIYYEAEFRKKYDPTKIEGAVVYWNVDEQRWTTFQVENFMEWRPVV
>NZ_CP012706.1|WP_032573616.1|236102_236333_-|hypothetical-protein
MKHYECLKLLITLYQDGAMGIKKETSQIALARYIDDKKLLGNIRNGIFIPLKFSTILKETNTIWNEMLRDKSIGIK
>NZ_CP012706.1|WP_011202139.1|236346_236538_+|hypothetical-protein
MGFSFFRPLFDLRSLLSEICLLPVLFFLNSFFFFLLFVFVVHNLFNFSDFYLYKMLQRYGRKI
>NZ_CP012706.1|WP_005784914.1|237049_237586_+|capsular-polysaccharide-transcription-antiterminator-UpgY
MEVEKETEIWFAMRATYRRETDAMRLLAKENLGCFVPMQYKISIKKGKKVRVLVPIIHNLIFIHACPSEVKRVKSMVAYLQYITDTRSGKKIIIPDNEMQRFIAVAGTYSDHLLYFQPDELNLSKGTKVRITGGDFEGQEGVFLKVKGARDRRVVIAIQGVIAVAMATIHPDLIEVIK
>NZ_CP012706.1|WP_005801381.1|237605_238094_+|transcriptional-regulator
MTLSEEVASLQRAAHDLMYLGMDGSPIYSDDLSRRNNEVYRLTTTLYNSGVKGSTVEEQASVCLALLMGYNASFIDHGEKREHVQKILDRCWDILDTLPASLLKLRLLTACYGEVFDEPLADEARAIIASWDSVSLTTEQQEAINEFQTVVDNPYPWEYVEE
>NZ_CP012706.1|WP_065344287.1|238258_239149_+|glucose-1-phosphate-thymidylyltransferase-RfbA
MKGIVLAGGSGTRLYPITKGVSKQLLPIFDKPMIYYPISVLMLAGIREILIISTPYDLPGFQRLLGDGSDYGVRFEYAEQPSPDGLAQAFIIGEKFIGDDSVCLVLGDNIFHGNGFSVMLKEAVRIADEKQEATVFGYWVNDPERYGVAEFDKRGNCLSIEEKPKVPKSNYAVVGLYFYPNKVVEVAKNIKPSARGELEITTVNQYFLKKEQLKVQTLGRGFAWLDTGTHDSLSEASTYIEVLEKRQGLKIACLEGIALRQGWINSDKMKKLAQPMLKNQYGKYLLKVIDELAADQ
>NZ_CP012706.1|WP_014298564.1|239839_241177_+|nucleotide-sugar-dehydrogenase
MQEYKDLKIAVAGTGYVGLSMAVLLSQHHNVVAVDVIPEKVEKINRRVSPIQDEYIEKYFAEKDLKLTATLDGKAAYKDVDFVIIAAPTNYDPVKNFFDTHHIEDVIDLVLEVNPDAIMVIKSTIPVGYTRSLYKKYAHLFQLKPELKGKHFNLLFSPEFLRESKALYDNLYPSRIIVGYPKIIDGKEFDEENTAIKSIGNSDAEEYAKIFAKLLQEGAIKEEIDTLFMGMKEAEAVKLFANTYLALRVSYFNELDTYAEMKGLDSQAIISGVGLDPRIGTHYNNPSFGYGGYCLPKDTKQLLANYADVPQNMMSAIVESNRTRKDFIANQVLNKAGYYHESANWEAEKEKVVVIGVYRLTMKSNSDNFRQSAIQGIMKRIKAKGATTIIYEPTLVDGESFFGSKVVNDLDAFKRQSQAIIANRYDACLDDVREKVYTRDIFKRD
>NZ_CP012706.1|WP_025813667.1|241181_242240_+|NAD-dependent-epimerase/dehydratase-family-protein
MLEYNIDLKGKTILVTGAAGFIGSNLVKRLLTDFNNIKVIGIDSITDYYDVNLKYERLTEIDSLSKDWTFLKGSIADKALIENVFTENKIDVVVNLAAQAGVRYSITNPGSYIESNLIGFYNILEVCRHHEVAHLVYASSSSVYGSNKKIPYSTDDKVDNPVSLYAATKKSNELMAHAYSKLYNIPSTGLRFFTVYGPAGRPDMAYFGFTNKLVKGETIKIFNYGNCKRDFTYVDDIVEGVVRVMRHAPERRTGEDGLPVPPYIIYNIGNNQPENLLDFVTILQEELVRAGVLPAEYDFEAHKELVPMQPGDVPVTYADTTPLVQDFDFKPSTPLREGLCKFAEWYNGYYNK
>NZ_CP012706.1|WP_005795239.1|242704_243229_+|GNAT-family-N-acetyltransferase
MKIVLRPITLQDGVHLVKWRNDERVINHCLSRATITEESNKEFYENFVKTGKYKQFMVERLNEDFPIVAYPIATVYLKDMDYANKRCELCIFTSTDTEWTPDSQSMAIRMLVDKAFTEYGMHKVYSYVFYKYPDEVELLKNAGFSAEAILKDEALNAEGKYEDIVRLSIINTEK

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Crispr_ID: NZ_CP012706_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP012706_2

1984987-1986628

TypeIII

Consensus_repeat	Method
ATGTAGATGTATTCCAGTATAATAAGGATTAAGAC	PILER-CR
ATGTAGATGTATTCCAGTATAATAAGGATTAAGAC	CRISPRCasFinder
ATGTAGATGTATTCCAGTATAATAAGGATTAAGAC	CRT

23 spacers

cas2,cas1,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,cmr1gr7

The CRISPR arrays of NZ_CP012706_2

>merge|NZ_CP012706|2|1984987-1986628|PILER-CR,CRISPRCasFinder,CRT
ATGTAGATGTATTCCAGTATAATAAGGATTAAGACAATAGGCGTAGCCGTTCATAACATAACTAGCCTCTAATGTAGATGTATTCCAGTATAATAAGGATTAAGACTTGAATTCCAAGACCTAAAGCCGTACCGATTGATGTAGATGTATTCCAGTATAATAAGGATTAAGACGAAAATATTGAAGATTCTGAACGGGAGAAAAAATGTAGATGTATTCCAGTATAATAAGGATTAAGACTTTAGCAGGCGGTACAGGCTCTTCAGAAACTTCCTATGTAGATGTATTCCAGTATAATAAGGATTAAGACGCAATAAACGGAACTCCTCGAATTGTATTCATGGATGTAGATGTATTCCAGTATAATAAGGATTAAGACACACCGGCGCGGATATTTTCCTGCGCATTTATTTTATGTAGATGTATTCCAGTATAATAAGGATTAAGACAACCACTGCGCTTGGCAATGATTTCATCATTTTTGGATGTAGATGTATTCCAGTATAATAAGGATTAAGACGAAACTGAGCTTTCAAAAGAGGATGTCGGGTTTCATGTAGATGTATTCCAGTATAATAAGGATTAAGACGCTTACGCTTGCTGCTAGAGTGACGTTGTAATTTATGTAGATGTATTCCAGTATAATAAGGATTAAGACAAGTGACAATGCGTCTGGAGATGTTATACGTCTATGTAGATGTATTCCAGTATAATAAGGATTAAGACTCCAGAATTGCATTCTGATTTTCTTGTAAAAGAGGATGTAGATGTATTCCAGTATAATAAGGATTAAGACACACAAACATTTAATTCTTTTAGCGTTGCTAAAGCTATGTAGATGTATTCCAGTATAATAAGGATTAAGACGTAGAACTGTTGTTCTTCTTCATTGGCGATGTATAAATGTAGATGTATTCCAGTATAATAAGGATTAAGACGGTTTAATCGTGTGATAAATCACGGCATCAAAGAATAATGTAGATGTATTCCAGTATAATAAGGATTAAGACGTCAGTGCCATCAGATGTTCCATTTCACGGTCTTATGTAGATGTATTCCAGTATAATAAGGATTAAGACGAAACACAAGAGTATTTGACATCACGATATGCCATATATGTAGATGTATTCCAGTATAATAAGGATTAAGACCCGGGCACATAACCGTAGGGTTATCTCCCAATGTGAATGTAGATGTATTCCAGTATAATAAGGATTAAGACAAAACAGCTTTTATCAACCAAATTATTGGCAATAAAATATGTAGATGTATTCCAGTATAATAAGGATTAAGACTCTGCCAGTTTTATATCCAGCGGCGCCGTTTCCTTCATGTAGATGTATTCCAGTATAATAAGGATTAAGACAACAATGGTTGCCTTATGACGAGTGCATAACCTAATGTAGATGTATTCCAGTATAATAAGGATTAAGACTGCGGAGCATAATATATTGTTCCGTCTTTAGCAATGTAGATGTATTCCAGTATAATAAGGATTAAGACCAGAATGCCGGTACAAATTATCACTGTCTTTTTATGTAGATGTATTCCAGTATAATAAGGATTAAGACCAATGCCCAGAAATACTGCAAACTTTCCTTATTAGCATGTAGATGTATTCCAATATAAAAATTTAACTACA

>NZ_CP012706|2|2|1984987-1986557|PILER-CR
ATGTAGATGTATTCCAGTATAATAAGGATTAAGAC	AATAGGCGTAGCCGTTCATAACATAACTAGCCTCTA
ATGTAGATGTATTCCAGTATAATAAGGATTAAGAC	TTGAATTCCAAGACCTAAAGCCGTACCGATTG
ATGTAGATGTATTCCAGTATAATAAGGATTAAGAC	GAAAATATTGAAGATTCTGAACGGGAGAAAAA
ATGTAGATGTATTCCAGTATAATAAGGATTAAGAC	TTTAGCAGGCGGTACAGGCTCTTCAGAAACTTCCT
ATGTAGATGTATTCCAGTATAATAAGGATTAAGAC	GCAATAAACGGAACTCCTCGAATTGTATTCATGG
ATGTAGATGTATTCCAGTATAATAAGGATTAAGAC	ACACCGGCGCGGATATTTTCCTGCGCATTTATTTT
ATGTAGATGTATTCCAGTATAATAAGGATTAAGAC	AACCACTGCGCTTGGCAATGATTTCATCATTTTTGG
ATGTAGATGTATTCCAGTATAATAAGGATTAAGAC	GAAACTGAGCTTTCAAAAGAGGATGTCGGGTTTC
ATGTAGATGTATTCCAGTATAATAAGGATTAAGAC	GCTTACGCTTGCTGCTAGAGTGACGTTGTAATTT
ATGTAGATGTATTCCAGTATAATAAGGATTAAGAC	AAGTGACAATGCGTCTGGAGATGTTATACGTCT
ATGTAGATGTATTCCAGTATAATAAGGATTAAGAC	TCCAGAATTGCATTCTGATTTTCTTGTAAAAGAGG
ATGTAGATGTATTCCAGTATAATAAGGATTAAGAC	ACACAAACATTTAATTCTTTTAGCGTTGCTAAAGCT
ATGTAGATGTATTCCAGTATAATAAGGATTAAGAC	GTAGAACTGTTGTTCTTCTTCATTGGCGATGTATAA
ATGTAGATGTATTCCAGTATAATAAGGATTAAGAC	GGTTTAATCGTGTGATAAATCACGGCATCAAAGAATA
ATGTAGATGTATTCCAGTATAATAAGGATTAAGAC	GTCAGTGCCATCAGATGTTCCATTTCACGGTCTT
ATGTAGATGTATTCCAGTATAATAAGGATTAAGAC	GAAACACAAGAGTATTTGACATCACGATATGCCATAT
ATGTAGATGTATTCCAGTATAATAAGGATTAAGAC	CCGGGCACATAACCGTAGGGTTATCTCCCAATGTGA
ATGTAGATGTATTCCAGTATAATAAGGATTAAGAC	AAAACAGCTTTTATCAACCAAATTATTGGCAATAAAAT
ATGTAGATGTATTCCAGTATAATAAGGATTAAGAC	TCTGCCAGTTTTATATCCAGCGGCGCCGTTTCCTTC
ATGTAGATGTATTCCAGTATAATAAGGATTAAGAC	AACAATGGTTGCCTTATGACGAGTGCATAACCTA
ATGTAGATGTATTCCAGTATAATAAGGATTAAGAC	TGCGGAGCATAATATATTGTTCCGTCTTTAGCA
ATGTAGATGTATTCCAGTATAATAAGGATTAAGAC	CAGAATGCCGGTACAAATTATCACTGTCTTTTT
ATGTAGATGTATTCCAGTATAATAAGGATTAAGAC

>NZ_CP012706|2|1|1984987-1986557|CRISPRCasFinder
ATGTAGATGTATTCCAGTATAATAAGGATTAAGAC	AATAGGCGTAGCCGTTCATAACATAACTAGCCTCTA
ATGTAGATGTATTCCAGTATAATAAGGATTAAGAC	TTGAATTCCAAGACCTAAAGCCGTACCGATTG
ATGTAGATGTATTCCAGTATAATAAGGATTAAGAC	GAAAATATTGAAGATTCTGAACGGGAGAAAAA
ATGTAGATGTATTCCAGTATAATAAGGATTAAGAC	TTTAGCAGGCGGTACAGGCTCTTCAGAAACTTCCT
ATGTAGATGTATTCCAGTATAATAAGGATTAAGAC	GCAATAAACGGAACTCCTCGAATTGTATTCATGG
ATGTAGATGTATTCCAGTATAATAAGGATTAAGAC	ACACCGGCGCGGATATTTTCCTGCGCATTTATTTT
ATGTAGATGTATTCCAGTATAATAAGGATTAAGAC	AACCACTGCGCTTGGCAATGATTTCATCATTTTTGG
ATGTAGATGTATTCCAGTATAATAAGGATTAAGAC	GAAACTGAGCTTTCAAAAGAGGATGTCGGGTTTC
ATGTAGATGTATTCCAGTATAATAAGGATTAAGAC	GCTTACGCTTGCTGCTAGAGTGACGTTGTAATTT
ATGTAGATGTATTCCAGTATAATAAGGATTAAGAC	AAGTGACAATGCGTCTGGAGATGTTATACGTCT
ATGTAGATGTATTCCAGTATAATAAGGATTAAGAC	TCCAGAATTGCATTCTGATTTTCTTGTAAAAGAGG
ATGTAGATGTATTCCAGTATAATAAGGATTAAGAC	ACACAAACATTTAATTCTTTTAGCGTTGCTAAAGCT
ATGTAGATGTATTCCAGTATAATAAGGATTAAGAC	GTAGAACTGTTGTTCTTCTTCATTGGCGATGTATAA
ATGTAGATGTATTCCAGTATAATAAGGATTAAGAC	GGTTTAATCGTGTGATAAATCACGGCATCAAAGAATA
ATGTAGATGTATTCCAGTATAATAAGGATTAAGAC	GTCAGTGCCATCAGATGTTCCATTTCACGGTCTT
ATGTAGATGTATTCCAGTATAATAAGGATTAAGAC	GAAACACAAGAGTATTTGACATCACGATATGCCATAT
ATGTAGATGTATTCCAGTATAATAAGGATTAAGAC	CCGGGCACATAACCGTAGGGTTATCTCCCAATGTGA
ATGTAGATGTATTCCAGTATAATAAGGATTAAGAC	AAAACAGCTTTTATCAACCAAATTATTGGCAATAAAAT
ATGTAGATGTATTCCAGTATAATAAGGATTAAGAC	TCTGCCAGTTTTATATCCAGCGGCGCCGTTTCCTTC
ATGTAGATGTATTCCAGTATAATAAGGATTAAGAC	AACAATGGTTGCCTTATGACGAGTGCATAACCTA
ATGTAGATGTATTCCAGTATAATAAGGATTAAGAC	TGCGGAGCATAATATATTGTTCCGTCTTTAGCA
ATGTAGATGTATTCCAGTATAATAAGGATTAAGAC	CAGAATGCCGGTACAAATTATCACTGTCTTTTT
ATGTAGATGTATTCCAGTATAATAAGGATTAAGAC

>NZ_CP012706|2|1|1984987-1986628|CRT
ATGTAGATGTATTCCAGTATAATAAGGATTAAGAC	AATAGGCGTAGCCGTTCATAACATAACTAGCCTCTA
ATGTAGATGTATTCCAGTATAATAAGGATTAAGAC	TTGAATTCCAAGACCTAAAGCCGTACCGATTG
ATGTAGATGTATTCCAGTATAATAAGGATTAAGAC	GAAAATATTGAAGATTCTGAACGGGAGAAAAA
ATGTAGATGTATTCCAGTATAATAAGGATTAAGAC	TTTAGCAGGCGGTACAGGCTCTTCAGAAACTTCCT
ATGTAGATGTATTCCAGTATAATAAGGATTAAGAC	GCAATAAACGGAACTCCTCGAATTGTATTCATGG
ATGTAGATGTATTCCAGTATAATAAGGATTAAGAC	ACACCGGCGCGGATATTTTCCTGCGCATTTATTTT
ATGTAGATGTATTCCAGTATAATAAGGATTAAGAC	AACCACTGCGCTTGGCAATGATTTCATCATTTTTGG
ATGTAGATGTATTCCAGTATAATAAGGATTAAGAC	GAAACTGAGCTTTCAAAAGAGGATGTCGGGTTTC
ATGTAGATGTATTCCAGTATAATAAGGATTAAGAC	GCTTACGCTTGCTGCTAGAGTGACGTTGTAATTT
ATGTAGATGTATTCCAGTATAATAAGGATTAAGAC	AAGTGACAATGCGTCTGGAGATGTTATACGTCT
ATGTAGATGTATTCCAGTATAATAAGGATTAAGAC	TCCAGAATTGCATTCTGATTTTCTTGTAAAAGAGG
ATGTAGATGTATTCCAGTATAATAAGGATTAAGAC	ACACAAACATTTAATTCTTTTAGCGTTGCTAAAGCT
ATGTAGATGTATTCCAGTATAATAAGGATTAAGAC	GTAGAACTGTTGTTCTTCTTCATTGGCGATGTATAA
ATGTAGATGTATTCCAGTATAATAAGGATTAAGAC	GGTTTAATCGTGTGATAAATCACGGCATCAAAGAATA
ATGTAGATGTATTCCAGTATAATAAGGATTAAGAC	GTCAGTGCCATCAGATGTTCCATTTCACGGTCTT
ATGTAGATGTATTCCAGTATAATAAGGATTAAGAC	GAAACACAAGAGTATTTGACATCACGATATGCCATAT
ATGTAGATGTATTCCAGTATAATAAGGATTAAGAC	CCGGGCACATAACCGTAGGGTTATCTCCCAATGTGA
ATGTAGATGTATTCCAGTATAATAAGGATTAAGAC	AAAACAGCTTTTATCAACCAAATTATTGGCAATAAAAT
ATGTAGATGTATTCCAGTATAATAAGGATTAAGAC	TCTGCCAGTTTTATATCCAGCGGCGCCGTTTCCTTC
ATGTAGATGTATTCCAGTATAATAAGGATTAAGAC	AACAATGGTTGCCTTATGACGAGTGCATAACCTA
ATGTAGATGTATTCCAGTATAATAAGGATTAAGAC	TGCGGAGCATAATATATTGTTCCGTCTTTAGCA
ATGTAGATGTATTCCAGTATAATAAGGATTAAGAC	CAGAATGCCGGTACAAATTATCACTGTCTTTTT
ATGTAGATGTATTCCAGTATAATAAGGATTAAGAC	CAATGCCCAGAAATACTGCAAACTTTCCTTATTAGC
ATGTAGATGTATTCCAATATAAAAATTTAACTACA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP012706.1\|WP_005787811.1\|1994380_1994908_-\|ferredoxin	unknown	unknown	gnl\|CDD\|227082
NZ_CP012706.1\|WP_008768885.1\|1993184_1994300_-\|agmatine-deiminase-family-protein	unknown	unknown	gnl\|CDD\|377332
NZ_CP012706.1\|WP_065344490.1\|1975387_1976797_+\|hypothetical-protein	cmr1gr7	mkCas0086_cmr1gr7_CAS-III-B	unknown
NZ_CP012706.1\|WP_005787785.1\|1980607_1981018_+\|hypothetical-protein	cmr5gr11	mkCas0098_cmr5gr11_CAS-III-B	unknown
NZ_CP012706.1\|WP_032529217.1\|1976801_1978604_+\|type-III-B-CRISPR-associated-protein-Cas10/Cmr2	cas10	cls000742_cas10_CAS-III	gnl\|CDD\|187810
NZ_CP012706.1\|WP_022348096.1\|1981984_1984255_+\|CRISPR-associated-endonuclease-Cas1	cas1	cd09634_cas1_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|275209
NZ_CP012706.1\|WP_005787783.1\|1979755_1980595_+\|type-III-B-CRISPR-module-RAMP-protein-Cmr4	cmr4gr7	cd09682_cmr4gr7_CAS-III-B	gnl\|CDD\|274210
NZ_CP012706.1\|WP_005787799.1\|1987523_1988708_-\|aminotransferase-class-I/II-fold-pyridoxal-phosphate-dependent-enzyme	unknown	unknown	gnl\|CDD\|99747
NZ_CP012706.1\|WP_065344491.1\|1992288_1993173_-\|carbon-nitrogen-hydrolase	unknown	unknown	gnl\|CDD\|143597
NZ_CP012706.1\|WP_005815846.1\|1974894_1975374_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP012706.1\|WP_005787793.1\|1984248_1984539_+\|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187856
NZ_CP012706.1\|WP_005787774.1\|1973422_1974898_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|213356
NZ_CP012706.1\|WP_005787816.1\|1995626_1996421_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|377092
NZ_CP012706.1\|WP_005787813.1\|1995002_1995623_+\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|213224
NZ_CP012706.1\|WP_005787787.1\|1981020_1981965_+\|type-III-B-CRISPR-module-RAMP-protein-Cmr6	cmr6gr7	cd09661_cmr6gr7_CAS-III-B	gnl\|CDD\|213662
NZ_CP012706.1\|WP_005787797.1\|1987312_1987468_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP012706.1\|WP_010993022.1\|1988942_1989986_+\|YegS/Rv2252/BmrU-family-lipid-kinase	unknown	unknown	gnl\|CDD\|224513
NZ_CP012706.1\|WP_005787805.1\|1991825_1992209_+\|GtrA-family-protein	unknown	unknown	gnl\|CDD\|377229
NZ_CP012706.1\|WP_005787803.1\|1990067_1991825_+\|aspartate--tRNA-ligase	unknown	unknown	gnl\|CDD\|234775
NZ_CP012706.1\|WP_005815842.1\|1978596_1979736_+\|CRISPR-associated-protein-Cmr3	cmr3gr5	pfam09700_cmr3gr5_CAS-III-B	gnl\|CDD\|273855

Protein	Function_ID	Function_description	E-value
NZ_CP012706.1\|WP_005787799.1\|1987523_1988708_-\|aminotransferase-class-I/II-fold-pyridoxal-phosphate-dependent-enzyme	gnl\|CDD\|99747	cd06454, KBL_like, KBL_like; this family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to serine palmitoyltransferase (SPT), 5-aminolevulinate synthase (ALAS), 8-amino-7-oxononanoate synthase (AONS), and 2-amino-3-ketobutyrate CoA ligase (KBL). SPT is responsible for the condensation of L-serine with palmitoyl-CoA to produce 3-ketodihydrospingosine, the reaction of the first step in sphingolipid biosynthesis. ALAS is involved in heme biosynthesis; it catalyzes the synthesis of 5-aminolevulinic acid from glycine and succinyl-coenzyme A. AONS catalyses the decarboxylative condensation of l-alanine and pimeloyl-CoA in the first committed step of biotin biosynthesis. KBL catalyzes the second reaction step of the metabolic degradation pathway for threonine converting 2-amino-3-ketobutyrate, to glycine and acetyl-CoA. The members of this CD are widely found in all three forms of life.	6.57706e-152
NZ_CP012706.1\|WP_008768885.1\|1993184_1994300_-\|agmatine-deiminase-family-protein	gnl\|CDD\|377332	pfam04371, PAD_porph, Porphyromonas-type peptidyl-arginine deiminase. Peptidyl-arginine deiminase (PAD) enzymes catalyze the deimination of the guanidino group from carboxy-terminal arginine residues of various peptides to produce ammonia. PAD from Porphyromonas gingivalis (PPAD) appears to be evolutionarily unrelated to mammalian PAD (pfam03068), which is a metalloenzyme. PPAD is thought to belong to the same superfamily as aminotransferase and arginine deiminase, and to form an alpha/beta propeller structure. This family has previously been named PPADH (Porphyromonas peptidyl-arginine deiminase homologs). The predicted catalytic residues in PPAD are Asp130, Asp187, His236, Asp238 and Cys351. These are absolutely conserved with the exception of Asp187 which is absent in two family members. PPAD is also able to catalyze the deimination of free L-arginine, but has primarily peptidyl-arginine specificity. It may have a FMN cofactor.	8.61949e-173
NZ_CP012706.1\|WP_032529217.1\|1976801_1978604_+\|type-III-B-CRISPR-associated-protein-Cas10/Cmr2	gnl\|CDD\|187810	cd09679, Cas10_III, CRISPR/Cas system-associated protein Cas10. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Multidomain protein with permuted HD nuclease domain, palm domain and Zn-ribbon; MTH326-like has inactivated polymerase catalytic domain; alr1562 and slr7011 - predicted only on the basis of size, presence of HD domain, and location with RAMPs in one operon; signature gene for type III; also known as Crm2 family.	4.61967e-19
NZ_CP012706.1\|WP_022348096.1\|1981984_1984255_+\|CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|275209	TIGR04416, hypothetical_protein, group II intron reverse transcriptase/maturase. Members of this protein family are multifunctional proteins encoded in most examples of bacterial group II introns. These group II introns are mobile selfish genetic elements, often with multiple highly identical copies per genome. Member proteins have an N-terminal reverse transcriptase (RNA-directed DNA polymerase) domain (pfam00078) followed by an RNA-binding maturase domain (pfam08388). Some members of this family may have an additional C-terminal DNA endonuclease domain that this model does not cover. A region of the group II intron ribozyme structure should be detectable nearby on the genome by Rfam model RF00029. [Mobile and extrachromosomal element functions, Other].	8.81514e-77
NZ_CP012706.1\|WP_005787783.1\|1979755_1980595_+\|type-III-B-CRISPR-module-RAMP-protein-Cmr4	gnl\|CDD\|274210	TIGR02580, putative_CRISPR-associated_protein, CRISPR type III-B/RAMP module RAMP protein Cmr4. This model represents a CRISPR-associated protein from the family that includes TM1792 of Thermotoga maritima. This family is part of the broad RAMP superfamily (pfam03787) collection of CRISPR-associated proteins. It is the fourth of a recurring set of six proteins, four of are in the RAMP superfamily, that we designate the CRISPR RAMP module.	1.13035e-40
NZ_CP012706.1\|WP_005787811.1\|1994380_1994908_-\|ferredoxin	gnl\|CDD\|227082	COG4739, COG4739, Uncharacterized protein containing a ferredoxin domain [Function unknown].	2.15583e-52
NZ_CP012706.1\|WP_065344491.1\|1992288_1993173_-\|carbon-nitrogen-hydrolase	gnl\|CDD\|143597	cd07573, CPA, N-carbamoylputrescine amidohydrolase (CPA) (class 11 nitrilases). CPA (EC 3.5.1.53, also known as N-carbamoylputrescine amidase and carbamoylputrescine hydrolase) converts N-carbamoylputrescine to putrescine, a step in polyamine biosynthesis in plants and bacteria. This subgroup includes Arabidopsis thaliana CPA, also known as nitrilase-like 1 (NLP1), and Pseudomonas aeruginosa AguB. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 11. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer; P. aeruginosa AugB is a homohexamer, Arabidopsis thaliana NLP1 is a homooctomer.	1.21431e-168
NZ_CP012706.1\|WP_005787793.1\|1984248_1984539_+\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	4.70103e-19
NZ_CP012706.1\|WP_005787774.1\|1973422_1974898_+\|hypothetical-protein	gnl\|CDD\|213356	cd12822, TmCorA-like, Thermotoga maritima CorA-like family. This family belongs to the MIT superfamily of essential membrane proteins involved in transporting divalent cations (uptake or efflux) across membranes. Members of the Thermotoga maritima CorA_like family are found in all three kingdoms of life. It is a functionally diverse family, in addition to the CorA Co2+ transporter from the hyperthermophilic Thermotoga maritima, it includes three Saccharomyces cerevisiae members: two plasma membrane proteins, the Mg2+ transporter Alr1p/Swc3p and the putative Mg2+ transporter, Alr2p, and the vacuole membrane protein Mnr2p, a putative Mg2+ transporter. Thermotoga maritima CorA forms funnel-shaped homopentamers, the tip of the funnel is formed from two C-terminal transmembrane (TM) helices from each monomer, and the large opening of the funnel from the N-terminal cytoplasmic domains. The GMN signature motif of the MIT superfamily occurs just after TM1, mutation within this motif is known to abolish Mg2+ transport by Alr1p. Natural variants in this signature sequence may be associated with the transport of different divalent cations. The functional diversity of the MIT superfamily may also be due to minor structural differences regulating gating, substrate selection, and transport.	5.01953e-07
NZ_CP012706.1\|WP_005787816.1\|1995626_1996421_+\|ABC-transporter-permease	gnl\|CDD\|377092	pfam03649, UPF0014, Uncharacterized protein family (UPF0014).	2.50282e-82
NZ_CP012706.1\|WP_005787813.1\|1995002_1995623_+\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|213224	cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of nickel/oligopeptides specific transporters. The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.	2.90813e-36
NZ_CP012706.1\|WP_005787787.1\|1981020_1981965_+\|type-III-B-CRISPR-module-RAMP-protein-Cmr6	gnl\|CDD\|213662	TIGR01898, repair_system, CRISPR type III-B/RAMP module RAMP protein Cmr6. CRISPR is a term for Clustered Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR associated) proteins. This family, represented by TM1791 of Thermotoga maritima, is designated Cmr6 [sic], for CRISPR/Cas Ramp Module protein 6. This family is both closely related to and frequently encoded next to the TM1792 family of Cas proteins described by TIGR01867. The two proteins are fused in an example from Methanopyrus kandleri.	9.08058e-20
NZ_CP012706.1\|WP_010993022.1\|1988942_1989986_+\|YegS/Rv2252/BmrU-family-lipid-kinase	gnl\|CDD\|224513	COG1597, LCB5, Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only].	1.1697e-54
NZ_CP012706.1\|WP_005787805.1\|1991825_1992209_+\|GtrA-family-protein	gnl\|CDD\|377229	pfam04138, GtrA, GtrA-like protein. Members of this family are predicted to be integral membrane proteins with three or four transmembrane spans. They are involved in the synthesis of cell surface polysaccharides. The GtrA family are a subset of this family. GtrA is predicted to be an integral membrane protein with 4 transmembrane spans. It is involved is in O antigen modification by Shigella flexneri bacteriophage X (SfX), but does not determine the specificity of glucosylation. Its function remains unknown, but it may play a role in translocation of undecaprenyl phosphate linked glucose (UndP-Glc) across the cytoplasmic membrane. Another member of this family is a DTDP-glucose-4-keto-6-deoxy-D-glucose reductase, which catalyzes the conversion of dTDP-4-keto-6-deoxy-D-glucose to dTDP-D-fucose, which is involved in the biosynthesis of the serotype-specific polysaccharide antigen of Actinobacillus actinomycetemcomitans Y4 (serotype b). This family also includes the teichoic acid glycosylation protein, GtcA, which is a serotype-specific protein in some Listeria innocua and monocytogenes strains. Its exact function is not known, but it is essential for decoration of cell wall teichoic acids with glucose and galactose.	3.57955e-18
NZ_CP012706.1\|WP_005787803.1\|1990067_1991825_+\|aspartate--tRNA-ligase	gnl\|CDD\|234775	PRK00476, aspS, aspartyl-tRNA synthetase; Validated.	0
NZ_CP012706.1\|WP_005815842.1\|1978596_1979736_+\|CRISPR-associated-protein-Cmr3	gnl\|CDD\|273855	TIGR01888, Hypothetical_protein_SSO1730, CRISPR type III-B/RAMP module-associated protein Cmr3. CRISPR is a term for Clustered Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR associated) proteins. This highly divergent family is found in at least ten different archaeal and bacterial species as part of the CRISPR RAMP modulue but is not a member of the RAMP superfamily itself. A typical example is TM1793 from Thermotoga maritima.	1.86644e-12

>NZ_CP012706.1|WP_005787793.1|1984248_1984539_+|CRISPR-associated-endonuclease-Cas2
MVKAKKIFCVVAYDIQDDRSRIQISKILEKYGTRINYSVFECMFTDRQFQKIQINLERWINRRYDTVVYYPMCINCYTRIIYQPIRKKIIKTVEIV
>NZ_CP012706.1|WP_022348096.1|1981984_1984255_+|CRISPR-associated-endonuclease-Cas1
MPDYYHSITTLHALQNAWRAVRAKNAAGGIDGFTLSHFEKRLNDNLIELQHELISQTWNPEPYLRIEITKNETEKRKLGLLCIKDKIVQQAIKTAIEPQLEKTFLNLSYGYRPNKGPERAIKRVVHDLKKLKSGYVAKLDIDNYFDTINHERLFTRLANWLKDDETLRLIRLCIQTGIVTPQLQWQEINKGVPQGAILSPLLANFYLHPFDQFAANKVPMYIRYADDFLIATSTEKQIKEAVELVKEELESQFYLQLNTPIIHNFHDGIEFLGITISDTGLSITEKKKKTLQERINSIKFIKSSLSSQSKETLQGIKNYYAKLLPESTLKELDCFLMNRLNALIIRNQNSINNKKELVSNLQKIEFYSENSNKNKSQLIQQLCSTYIVHSTKSKTRLTSTHIDNTKLITQKKKEYQKRENEGAELVISIPGSYIGATYKGITVKLQGKIINKPSPALKHITVVGKGISLSSNAITYCMNHKIPIDFFDGRGKQYGTVLNPVFLDGTLWNKQVELPLEQKIKLATQIIIGKLKNQLNLIKYYHKYHKDILGGKLSEKYVEVVLKIDKLIEKAKNYSQRNEKYTAELMAIESQAAIAYWSYIRVLTADDGIDFIRREHQGATDLLNSLLNYGYAILYARVWKNILAAKLNPSIGVLHAKQDGKPTLVFDVVELFRAQMVDRVVISLIQKKVSLKMHDGLLNESSKRVLIRYILERLNRYEKYRGEEITFSQIILRQAQEIALFISGDNLIFKPYVAKW
>NZ_CP012706.1|WP_005787787.1|1981020_1981965_+|type-III-B-CRISPR-module-RAMP-protein-Cmr6
MPKNYTLQNASNLGWLFYKDYYRQEPNVDFISTQGKESDTTADFFRKTNQRITAYQLNSESPLVAAFNNHFGTPLQLKTIYPGLITGSGLPHQTGSKGEFKLGFQFDYTTGLPYIPGSSIKGTLRSMFPFSLKDKGSTKRILPEYRKERMEYIRDLIIEVTNINEISDTEIQALEYAIFTNSTPSGKTIEFSLEEKDVFYDAFVADSKDGVMLSDDYITPHGENPLKDPKPILFLKIRPDVTINFYFKLCTTHLYKEKVCSSKQIEEIKKQNDFSSSDYKMITAHQKRNLFEKILLCIGIGAKTNIGYGQLKKL
>NZ_CP012706.1|WP_005787785.1|1980607_1981018_+|hypothetical-protein
MKISKKQIEYAIEALRANNIITNDNQYPKVFKGYISSFGAAVIQSGLIPAIIFFENEDNDANADRHKIIGVLKDIINAMRQQYTVTDATILVSSQIPANYSMAQYIIEHGNTDQLLKEITEAAVAMKLALRMYKSE
>NZ_CP012706.1|WP_005787783.1|1979755_1980595_+|type-III-B-CRISPR-module-RAMP-protein-Cmr4
MTTRMYVINTLSNMHVGSGEVNYGVIDNLIQRDSVTNLPNINSSGLKGAIREYFKENENLVRELFGSAPKDEKTLPGKVRFFEANLLSMPVRSDKVPFLMATSDEVLQELITKMKFFNCEEATQYISHLSTLLDNIKTQAQGTDFAYVFDPSLQGAIIEEVSIRATCPSHIPLQLSLKKLLGDRLVILSHKYFSILSDDNHLPVLSRNNLENGQSANLWYEQVLPRYSRLYFMLMDGNAQSEYLKKFRDTLCTPSTIIQIGANASIGYGYCQISELSPF
>NZ_CP012706.1|WP_005815842.1|1978596_1979736_+|CRISPR-associated-protein-Cmr3
MNRHYLITLTPMDWFFFGGERTLDDGKSADYISHSNKFPQQSALLGMIRYQLLKQHNLLSQFPYTENKPTEKEIMKTLIGEQSFRMTERKAKSLGLGVIKQISPLMLIECKDDTSSRSIYFPLPLDDGYKVSFNETSNEDKVFYNGIECPIPNVYPASEEQDSGNQKRKFFDHKTYNNYLFWCTQGNNQIKKLLSDEIWISKMQIGITKHVEEGEDNDKSFYKQEFLQLKKSFIYAFYITLSGESELSSDIIQLGGQRSVFRMEVESIEENSDIQEKYQTAAQFLTQSDRLLILSPTYVDNLKELSALCNFMWSDSIVFRNIQTTNASNFYGKPIKSSSKYHFLKPGSVLYFKQGKRKEVEKLLMDYTYLRLSGYNIYI
>NZ_CP012706.1|WP_032529217.1|1976801_1978604_+|type-III-B-CRISPR-associated-protein-Cas10/Cmr2
MKYIAITLGPITRTIEMAESTKELWAASYFFSYLAKKIVEPFVKKNRTFQLPLINEEMQKPHCGAGLFPDRYIFKSEPGDLELLKQHSDQVLIEIAGHIASPSLPGTAKDVSQIYHYLKSYIKIYFIEHTLESDDPHVVIPACEKYLNIIENQETFPEQEETMISHQKSDFLKFLITNVNGKIYRKDKNSIPRFTGSFLTRDAFGDMNGERLFESILEISASELNINIQQKALEVITANEKNKGEKYSDQIWDAEEIILNDNKAQLRPYHKYIAIIKSDGDSMGETIKSMGAYNIPITQLSKALLSFNIESINEIVAYGGKPIFIGGDDLLCFAPVCCNGNNVFNLVEKLSTCFDQCINQHLQQYINACSEAQRPLPSLSFGISITYHKYPMFEALHTTDYLLEMVAKDNLFKYTLSNKNILNENMKRFILKNKLAFSLQKHSGQIYHTAMSKKGKSYVKFNMLLQKYILKNKDMSKTQESEKFLSSVIQMIRAHAEILQIILQNEDKRTEMLKNYFDNNFNESCHLGYTGLFEDIQTLLCLRYQENIQDYQNRNEIIQQNTILTSDEKEILIVSPAMDAIHTIFTALQFIHFINYNKDE
>NZ_CP012706.1|WP_065344490.1|1975387_1976797_+|hypothetical-protein
MNQLTAILKQHTPMIHFQHNESGATLRASEVKPLLDKFILTKLGNGDIREGRLYAKKNNWLIDNEKNYALNYKLSISLQKKSRLEYLITSSTFPLPTERPSNFFTIQNSPYFAQEKCVGINTNSTIILKKSNSDPRKKEAEFKEKNWSQIDKKGLEWQDFTIKIFSLKGDLINKIQTYLPAFFICHNFGTRNNKGFGSFTVEYINNQKNICNVEDTLKENFAFVYKKKIALSCQSTLDFIYIYNQIFSTIKKDYQILKSGYNFRNEYIKSLLFCYFVSKYPNYRWEKRKMKQLIKARGYELKGDHSPISGIRENDNSWNDPNPNGYNYAYIRAILGLAEQYEFQLETPYQKAIVKIKSANNCISRYKSPLLFKIINNSIYLVGNEINTEILNKPFQYSYIEQTKNKNMRTGKSEITERTMHINEIEMNYNNRINYHYTPTSFSLIDFMQYAMSYKKNGKNILNYIPLKQ
>NZ_CP012706.1|WP_005815846.1|1974894_1975374_+|hypothetical-protein
MNWKLVECEIALIVSLTVIECVNMGQNSPKDITCLTVFFCIMIVLLPLIGVLQQWHLSCFQNRQKEKEYQAKQETDEKMKTWLLAREAIIKDKEKEELTNKVNGLQQKCDSLIENQENELKKFYLSILSIIGTKDDLKSIEENFKKMKDFFEEYKKITK
>NZ_CP012706.1|WP_005787774.1|1973422_1974898_+|hypothetical-protein
MIYSYHIFYFPFKWEIMGLENQAFSDQVNLDNIQYNRNSHWERSQKPDPGEEESLYNEKNYYYTFVHNILYDEEHSPLNLIHHFERKEPKLSNHIYYYIKKKGRNNPYKLIVDAMNINLYATGVGFLSFYLKNEDCTQNSPEDILAINQYGRRIMPPFFNDTRLRNEISEYIRIEGLNQTVYFEDFKSYTPYDSWQPSSSIKKLICELVTNLSIDPIIDDRMFVATWYKNNQLSQQFTNNAKAYFDSQDPFSDYWYRFLFIDGSNATCQNEKMKKELLEEHTYYRWQQWSSLYGISKYSLVYLTNNEVPDYLIEYFQTIYARMAELVLVQRASMLRFSGEITKVSQLSNQDVEAVSKRVSSLYKEYIRFVNQIYFREITAQDQGIEMYNKLHSCLQMESYIKDLDGEIEELHQYISLMEDRERNKKASLLNDIATLFLPITVITGFWGMNQISEVMEENGELSTGFIIQSLLLIIGTLCAICIIYKRKRKL
>NZ_CP012706.1|WP_005787797.1|1987312_1987468_+|hypothetical-protein
MSVWMYIAVTDPGYGNEQNDEFMKNMGIEAFVKYNYFHKEQKRTWNKDAKT
>NZ_CP012706.1|WP_005787799.1|1987523_1988708_-|aminotransferase-class-I/II-fold-pyridoxal-phosphate-dependent-enzyme
MGLLQEKLAKYDLPQQIKAKGVYPYFRCIESEQNTEVIMSGRKVLMFGSNSYLGLTNHPKVIEAAVEATRKYGTGCAGSRFLNGTLDLHLQLEKELAEFVGKEDAIIYSTGFQVNLGVVSCVTGREDYVICDELDHASIVEGRRLSFSTILKFKHNDMESLEKELQKCRPDAVKLIVVDGVFSMEGDIANLPEIVRLSKKYDANIMVDEAHGLGVLGNHGRGTCDHFGLTKEVDLIMGTFSKSLAAIGGFIAADESIINYLRHNSRSYIFSASNTPAATAAARAALQIMKNEPERIEHLWDITNYSLKCFRELGFEIGHTSTPIIPLYVRDMEKTFMVTKMLFDEGVFVNPVVPPACSPNDTLIRFSLMATHSKEQIDFAIGKLVKCFKALDLL
>NZ_CP012706.1|WP_010993022.1|1988942_1989986_+|YegS/Rv2252/BmrU-family-lipid-kinase
MSENKKKIIFIVNPISGTQSKELVLSLLDEKIDKEMYTWEVVYTERAGHAIEIAADAADKNTDIVVAVGGDGTINEIARSLVHTNTALGIIPCGSGNGLARHLQISMDPRKALEILNDGIIDIIDYGKINGTDFFCTCGVGFDAFVSLKFANAGKRGLLTYLEKTLQESLKYQPETYELETEDGTSKYKAFLIACGNASQYGNNAYIAPQATLTDGLLDVTILEPFTVLDVPALAFQLFNKTIDQNSRIKTFRCKKLCIHRSSPGVVHFDGDPMQADEDIKIELIQKGLRVVVPGDKKKDNPNVLQKAQEYVNGIKLINEAIVEDIAHKNKVILKKNKQLIQKLTKK
>NZ_CP012706.1|WP_005787803.1|1990067_1991825_+|aspartate--tRNA-ligase
MFRTHTCGELRISDVNKQVKLSGWVQRSRKMGGMTFVDLRDRYGITQLVFNEEIDAELCERANKLGREFVIQIVGTVNERFSKNSHIPTGDIEIIVSELNILNSAITPPFTIEDNTDGGDDIRMKYRYLDLRRSAVRSNLELRHKMTIEVRSYLDKLGFLEVETPVLIGSTPEGARDFVVPSRMNPGQFYALPQSPQTLKQLLMVSGFDRYFQIAKCFRDEDLRADRQPEFTQIDCEMSFVEQEDVITTFEGMAKHLFKVIRNIELTEPFPRMPWSEAMRLYGSDKPDIRFGMQFVELMDILKGHSFSVFDNATYIGGICAEGAASYTRKQLDALTEFVKKPQIGAKGMVYARIEADGTVKSSVDKFYTQEVLQQLKEAFGAKPGDLILILSGDDAMKTRKQLCELRLEMGNQLGLRDKNTFACLWVVDFPLFEWSEEEGRLMAMHHPFTSPKPEDIHLLDTNPAAVRANAYDMVINGVEVGGGSIRIHDSQLQNKMFELLGFTPERAQEQFGFLMNAFKFGAPPHGGLAYGLDRWVSLFAGLDSIRDCIAFPKNNSGRDVMLDAPAALDPSQLEELNLIVDIKE
>NZ_CP012706.1|WP_005787805.1|1991825_1992209_+|GtrA-family-protein
MKESVRIFRFAVIGTLNALITAFVIWLMMDELSYDYIPANITAYIVAQIHNFIWSKYWIFPIENKKNNIWKQMLFFCSAFGLAYSAQFLFLVTLVECGDVNEYLAQFLGLFIYGTVNFIVNKKLTFR
>NZ_CP012706.1|WP_065344491.1|1992288_1993173_-|carbon-nitrogen-hydrolase
MRKIKVGIIQQANTSDIRINLMNLAKSIEACAANGAQLVVLQELHNSLYFCQTENTDLFELAEPIPGPSTGFYSELAAANRIVLVTSLFEKRAPGLYHNTAVVFDRDGSIAGKYRKMHIPDDPAYYEKFYFTPGDIGFEPIQTSLGKLGVLVCWDQWYPEAARLMALKGAEILIYPTAIGWESTDTDDEKKRQLNAWIISQRAHAVANGLPVISVNRVGHEPDPSGQTNGILFWGNSFVAGPQGEYLAQAGNDRSENMIIEVDLERSENVRRWWPFLRDRRIDEYGNLTKRFID
>NZ_CP012706.1|WP_008768885.1|1993184_1994300_-|agmatine-deiminase-family-protein
MGIMVGLPTSGGTEKDLQLNFGLTVNDQVEMLAPFLPAEWFLQSGIQLTWPHAGTDWAYMLAEVQECFINIAREIAKRELLLIVTPYPEEVRKQIIGTVNMDNVRFLKCDTNDTWARDHGAITLMDTGGASLLDFTFNGWGEKFEARLDNQITRRAVEAGALKGQYKDCLNFVLEGGSIESDGAGTLLTTSECLLSPHRNSPMNRVDIEEYLCRVFHLQRVLWLDHGYLSGDDTDSHIDTLARFCSPDTIAYVKCTDSEDEHYEALCKMEEQLKTFRTTSGAPYRLLALPMADKIEVEGERLPATYANFLIMNDVVLYPTYNQPENDKLAKEVLCEAFPTYEVVGIDCRALIKQHGSLHCVTMQYPTGVIK
>NZ_CP012706.1|WP_005787811.1|1994380_1994908_-|ferredoxin
MILNERDSRHEHVLNVARQMMTAARTAPKGKGIDIIETAIVTGEEIQQLSDTLKAMFEEFGMKFFLRDADNILQAECILLIGTREQAQGLNCGHCGYATCSGRSEGVPCALNSIDVGIAIGSACATAADLRVDTRVMFSAGLAAQRLEWLKGCRQVMAIPVSASSKNPFFDRKPK
>NZ_CP012706.1|WP_005787813.1|1995002_1995623_+|ATP-binding-cassette-domain-containing-protein
MLQIDNACIAFGEDILFSEFCMRLNKGETACIAGQSGRGKTSLLNAIMGFVPLRKGKIKVGGILLEPTTIDAIRRHIAWIPQELALPSEWVKEMISLPFALKANRHISFSKEKLFTCFDELGLDKELYQKRVGEISGGQRQRIMIAVAAMLEKPLIIVDEPTSALDAGSTDKVLAFFRNQAEKGTAILAVSHDRTFAYGCNQLITL
>NZ_CP012706.1|WP_005787816.1|1995626_1996421_+|ABC-transporter-permease
MGTIDISYFNLLIGLLLLVIPLFYLWKFKTGLLKATLIGTARMIVQLFLIGMYLKYLFLWNNPWINFLWVIIMIFVAGQTALVRTGLKREILLIPISVGFLCSVVLVGMYFIGIVLQLDNVFSAQYFIPIFGILMGNMLSSNVIALNTYYSGLKREQQLYCYLLGNGATRQEAQAPFIREAIIKSFSPLIANIAVMGLVALPGTMIGQILGGSSPNVAIKYQMMIMVITFTASMLSLMITISLASRKSFDEYGRILQVTKESQK

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Crispr_ID: NZ_CP012706_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP012706_3

2133309-2133851

Unclear

Consensus_repeat	Method
ATTTCAATTCCATAAGGTACAATTAATAC	CRISPRCasFinder
ATTTCAATTCCATAAGGTACAATTAATAC	CRT
ATTTCAATTCCATAAGGTACAATTAATAC	PILER-CR

8 spacers

cas2,cas6

The CRISPR arrays of NZ_CP012706_3

>merge|NZ_CP012706|3|2133309-2133851|CRISPRCasFinder,CRT,PILER-CR
GTCCTAATTCCATAAGGTACAATTAATACCAGTGCAGCACATCGTAATATCTTGCATTTTGCACAAATTTCAATTCCATAAGGTACAATTAATACTAACCGGACTTACAGCTGATAATCAGTTAGAGTAATTTCAATTCCATAAGGTACAATTAATACCAATTACACAGATCGTAAAACTTGCCGAGCTATTTAATTTCAATTCCATAAGGTACAATTAATACCGTATTCGCCATCGAACCGAAGACCGGCGTGTATATTTCAATTCCATAAGGTACAATTAATACAGCAAGGGAAACTGTACGATGTACAAGTACTCGGATTTCAATTCCATAAGGTACAATTAATACCTGATGAAGCGATTAAGAAGATCAATGTGATGATTAAATTTCAATTCCATAAGGTACAATTAATACTCAGTTACCCTGACGGCCAATCCTTCCGCCATTTCCATTTCAATTCCATAAGGTACAATTAATACGAAGTCCGCTGAAATCCAGCCCGCCTTTTCGTTCATTTCAATTCCATAAGGTACAATTAATAC

>NZ_CP012706|3|2|2133309-2133851|CRISPRCasFinder
GTCCTAATTCCATAAGGTACAATTAATAC	CAGTGCAGCACATCGTAATATCTTGCATTTTGCACAA
ATTTCAATTCCATAAGGTACAATTAATAC	TAACCGGACTTACAGCTGATAATCAGTTAGAGTA
ATTTCAATTCCATAAGGTACAATTAATAC	CAATTACACAGATCGTAAAACTTGCCGAGCTATTTA
ATTTCAATTCCATAAGGTACAATTAATAC	CGTATTCGCCATCGAACCGAAGACCGGCGTGTAT
ATTTCAATTCCATAAGGTACAATTAATAC	AGCAAGGGAAACTGTACGATGTACAAGTACTCGG
ATTTCAATTCCATAAGGTACAATTAATAC	CTGATGAAGCGATTAAGAAGATCAATGTGATGATTAA
ATTTCAATTCCATAAGGTACAATTAATAC	TCAGTTACCCTGACGGCCAATCCTTCCGCCATTTCC
ATTTCAATTCCATAAGGTACAATTAATAC	GAAGTCCGCTGAAATCCAGCCCGCCTTTTCGTTC
ATTTCAATTCCATAAGGTACAATTAATAC

>NZ_CP012706|3|2|2133309-2133851|CRT
GTCCTAATTCCATAAGGTACAATTAATAC	CAGTGCAGCACATCGTAATATCTTGCATTTTGCACAA
ATTTCAATTCCATAAGGTACAATTAATAC	TAACCGGACTTACAGCTGATAATCAGTTAGAGTA
ATTTCAATTCCATAAGGTACAATTAATAC	CAATTACACAGATCGTAAAACTTGCCGAGCTATTTA
ATTTCAATTCCATAAGGTACAATTAATAC	CGTATTCGCCATCGAACCGAAGACCGGCGTGTAT
ATTTCAATTCCATAAGGTACAATTAATAC	AGCAAGGGAAACTGTACGATGTACAAGTACTCGG
ATTTCAATTCCATAAGGTACAATTAATAC	CTGATGAAGCGATTAAGAAGATCAATGTGATGATTAA
ATTTCAATTCCATAAGGTACAATTAATAC	TCAGTTACCCTGACGGCCAATCCTTCCGCCATTTCC
ATTTCAATTCCATAAGGTACAATTAATAC	GAAGTCCGCTGAAATCCAGCCCGCCTTTTCGTTC
ATTTCAATTCCATAAGGTACAATTAATAC

>NZ_CP012706|3|3|2133375-2133851|PILER-CR
ATTTCAATTCCATAAGGTACAATTAATAC	TAACCGGACTTACAGCTGATAATCAGTTAGAGTA
ATTTCAATTCCATAAGGTACAATTAATAC	CAATTACACAGATCGTAAAACTTGCCGAGCTATTTA
ATTTCAATTCCATAAGGTACAATTAATAC	CGTATTCGCCATCGAACCGAAGACCGGCGTGTAT
ATTTCAATTCCATAAGGTACAATTAATAC	AGCAAGGGAAACTGTACGATGTACAAGTACTCGG
ATTTCAATTCCATAAGGTACAATTAATAC	CTGATGAAGCGATTAAGAAGATCAATGTGATGATTAA
ATTTCAATTCCATAAGGTACAATTAATAC	TCAGTTACCCTGACGGCCAATCCTTCCGCCATTTCC
ATTTCAATTCCATAAGGTACAATTAATAC	GAAGTCCGCTGAAATCCAGCCCGCCTTTTCGTTC
ATTTCAATTCCATAAGGTACAATTAATAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP012706.1\|WP_005788091.1\|2144089_2144290_-\|winged-helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|371235
NZ_CP012706.1\|WP_014298997.1\|2123650_2125222_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP012706.1\|WP_005788073.1\|2132266_2132671_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP012706.1\|WP_005788084.1\|2139500_2140814_-\|Na+/H+-antiporter-NhaA	unknown	unknown	gnl\|CDD\|377746
NZ_CP012706.1\|WP_005788087.1\|2140858_2142037_-\|sodium:proton-antiporter	unknown	unknown	gnl\|CDD\|366411
NZ_CP012706.1\|WP_005788078.1\|2136445_2137300_+\|type-I-methionyl-aminopeptidase	unknown	unknown	gnl\|CDD\|238519
NZ_CP012706.1\|WP_005793479.1\|2144436_2144901_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|378246
NZ_CP012706.1\|WP_010993063.1\|2134063_2134327_-\|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187856
NZ_CP012706.1\|WP_014298996.1\|2122191_2123082_-\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|379213
NZ_CP012706.1\|WP_008768964.1\|2132693_2133128_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP012706.1\|WP_010993064.1\|2134953_2135625_-\|CRISPR-associated-endoribonuclease-Cas6	cas6	cd09652_cas6_CAS-I:CAS-III	gnl\|CDD\|273848
NZ_CP012706.1\|WP_005793488.1\|2137300_2138527_+\|DNA-recombination-protein-RmuC	unknown	unknown	gnl\|CDD\|224241
NZ_CP012706.1\|WP_004289510.1\|2123171_2123444_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP012706.1\|WP_008660466.1\|2138554_2139301_+\|DUF169-domain-containing-protein	unknown	unknown	gnl\|CDD\|376845
NZ_CP012706.1\|WP_014298998.1\|2125383_2126592_-\|integrase	unknown	unknown	gnl\|CDD\|271185
NZ_CP012706.1\|WP_041161383.1\|2121176_2122229_-\|DUF3871-family-protein	unknown	unknown	gnl\|CDD\|315630
NZ_CP012706.1\|WP_005788089.1\|2142182_2143964_-\|elongation-factor-4	unknown	unknown	gnl\|CDD\|235462
NZ_CP012706.1\|WP_005788070.1\|2129757_2131176_+\|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD	unknown	unknown	gnl\|CDD\|225174
NZ_CP012706.1\|WP_065344504.1\|2126770_2129491_-\|pyruvate,-phosphate-dikinase	unknown	unknown	gnl\|CDD\|236446
NZ_CP012706.1\|WP_008768963.1\|2131180_2132104_+\|RluA-family-pseudouridine-synthase	unknown	unknown	gnl\|CDD\|223638

Protein	Function_ID	Function_description	E-value
NZ_CP012706.1\|WP_005788091.1\|2144089_2144290_-\|winged-helix-turn-helix-domain-containing-protein	gnl\|CDD\|371235	pfam10771, DUF2582, Winged helix-turn-helix domain (DUF2582). This family is conserved in bacteria and archaea. The function is not known. The structure of two proteins in this family were solved using NMR and shown to adopt a winged helix-turn-helix fold. Structural analysis shows that these proteins form an unusual dimeric conformation. This dimer was shown to be similar to that found in the FadR and TubR wHTH domains. It was suggested that these proteins are not very likely to bind to DNA.	1.84664e-24
NZ_CP012706.1\|WP_008660466.1\|2138554_2139301_+\|DUF169-domain-containing-protein	gnl\|CDD\|376845	pfam02596, DUF169, Uncharacterized ArCR, COG2043.	1.54894e-26
NZ_CP012706.1\|WP_005788084.1\|2139500_2140814_-\|Na+/H+-antiporter-NhaA	gnl\|CDD\|377746	pfam06965, Na_H_antiport_1, Na+/H+ antiporter 1. This family contains a number of bacterial Na+/H+ antiporter 1 proteins. These are integral membrane proteins that catalyze the exchange of H+ for Na+ in a manner that is highly dependent on the pH.	3.16839e-165
NZ_CP012706.1\|WP_005788087.1\|2140858_2142037_-\|sodium:proton-antiporter	gnl\|CDD\|366411	pfam00999, Na_H_Exchanger, Sodium/hydrogen exchanger family. Na/H antiporters are key transporters in maintaining the pH of actively metabolising cells. The molecular mechanisms of antiport are unclear. These antiporters contain 10-12 transmembrane regions (M) at the amino-terminus and a large cytoplasmic region at the carboxyl terminus. The transmembrane regions M3-M12 share identity with other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the region that is involved in the transport of sodium and hydrogen ions. The cytoplasmic region has little similarity throughout the family.	0.00100961
NZ_CP012706.1\|WP_005793479.1\|2144436_2144901_-\|hypothetical-protein	gnl\|CDD\|378246	pfam09719, C_GCAxxG_C_C, Putative redox-active protein (C_GCAxxG_C_C). This entry represents a putative redox-active protein of about 140 residues, with four perfectly conserved Cys residues. It includes a CGAXXG motif. Most members are found within one or two loci of transporter or oxidoreductase genes. A member from Geobacter sulfurreducens, located in a molybdenum transporter operon, has a TAT (twin-arginine translocation) signal sequence for Sec-independent transport across the plasma membrane, a hallmark of bound prosthetic groups such as FeS clusters.	1.20542e-38
NZ_CP012706.1\|WP_010993063.1\|2134063_2134327_-\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	2.97832e-27
NZ_CP012706.1\|WP_014298996.1\|2122191_2123082_-\|AAA-family-ATPase	gnl\|CDD\|379213	pfam13479, AAA_24, AAA domain. This AAA domain is found in a wide variety of presumed phage proteins.	1.06286e-17
NZ_CP012706.1\|WP_005788078.1\|2136445_2137300_+\|type-I-methionyl-aminopeptidase	gnl\|CDD\|238519	cd01086, MetAP1, Methionine Aminopeptidase 1. E.C. 3.4.11.18. Also known as methionyl aminopeptidase and Peptidase M. Catalyzes release of N-terminal amino acids, preferentially methionine, from peptides and arylamides.	3.5766e-141
NZ_CP012706.1\|WP_010993064.1\|2134953_2135625_-\|CRISPR-associated-endoribonuclease-Cas6	gnl\|CDD\|273848	TIGR01877, CRISPR-associated_endoribonuclease_Cas6_1, CRISPR-associated endoribonuclease Cas6. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This broadly distributed, highly divergent Cas family is now characterized as an endoribonuclease that generates guide RNAs for host defense against phage and other invaders. The family contains a C-terminal motif GXGXXXXXGXG, where the each X between two Gly is hydrophobic and the spacer XXXXX contains (usually) one Arg or Lys. The seed alignment for the current version of this model has gappy columns removed. Members of this protein family are found associated with several different CRISPR/cas system subtypes, and consequently we designate this family Cas6.	9.8875e-25
NZ_CP012706.1\|WP_005793488.1\|2137300_2138527_+\|DNA-recombination-protein-RmuC	gnl\|CDD\|224241	COG1322, COG1322, Predicted nuclease of restriction endonuclease-like fold, RmuC family [General function prediction only].	4.76227e-92
NZ_CP012706.1\|WP_014298998.1\|2125383_2126592_-\|integrase	gnl\|CDD\|271185	cd01185, INTN1_C_like, Integrase IntN1 of Bacteroides mobilizable transposon NBU1 and similar proteins, C-terminal catalytic domain. IntN1 is a tyrosine recombinase for the integration and excision of Bacteroides mobilizable transposon NBU1 from the host chromosome. IntN1 does not require strict homology between the recombining sites seen with other tyrosine recombinases. This family belongs to the superfamily of DNA breaking-rejoining enzymes, which share the same fold in their catalytic domain and the overall reaction mechanism. The catalytic domain contains six conserved active site residues. Their overall reaction mechanism involves cleavage of a single strand of a DNA duplex by nucleophilic attack of a conserved tyrosine to give a 3' phosphotyrosyl protein-DNA adduct. In the second rejoining step, a terminal 5' hydroxyl attacks the covalent adduct to release the enzyme and generate duplex DNA.	7.58186e-11
NZ_CP012706.1\|WP_041161383.1\|2121176_2122229_-\|DUF3871-family-protein	gnl\|CDD\|315630	pfam12987, DUF3871, Domain of unknown function, B. Theta Gene description (DUF3871). Based on Bacteroides thetaiotaomicron gene BT_2984, a putative uncharacterized protein As seen in gene expression experiments (http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE2231). It appears to be upregulated in the presence of host or other bacterial species vs when in culture.	1.72571e-173
NZ_CP012706.1\|WP_005788089.1\|2142182_2143964_-\|elongation-factor-4	gnl\|CDD\|235462	PRK05433, PRK05433, GTP-binding protein LepA; Provisional.	0
NZ_CP012706.1\|WP_005788070.1\|2129757_2131176_+\|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD	gnl\|CDD\|225174	COG2265, TrmA, SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis].	4.2194e-124
NZ_CP012706.1\|WP_065344504.1\|2126770_2129491_-\|pyruvate,-phosphate-dikinase	gnl\|CDD\|236446	PRK09279, PRK09279, pyruvate phosphate dikinase; Provisional.	0
NZ_CP012706.1\|WP_008768963.1\|2131180_2132104_+\|RluA-family-pseudouridine-synthase	gnl\|CDD\|223638	COG0564, RluA, Pseudouridylate synthases, 23S RNA-specific [Translation, ribosomal structure and biogenesis].	4.55498e-67

>NZ_CP012706.1|WP_008768964.1|2132693_2133128_-|hypothetical-protein
MKTLNFMKTLFLLVAIVGLSSCGDKYYSDDYLRNSNAKLCGKTWVNDSEKNDVDEWVRHTLKFDDNGRLAETYAYYHVNESQPYRTETNNLTWSWIDDTMEGIVFDYGVNGVTYFDNVWVREHNMSGKLNGKVVVFVDSKYNRN
>NZ_CP012706.1|WP_005788073.1|2132266_2132671_-|hypothetical-protein
MKGYWKILLILMLAVGFASCEDDQGEIEYVITGRAWTGDVGMNAHNGEPLFSTFEFGNDGFGVETQFYASDGLLYDQFRFQWYWEDSYNRNLVLNYGKNGISYMDDVRIYGDRITGAFYLSDDARGFNFELRME
>NZ_CP012706.1|WP_008768963.1|2131180_2132104_+|RluA-family-pseudouridine-synthase
MNMKRIKRTPAEKARAQYTGYLVKEPMELMDFLAAKMPDASRTKLKSLLSKRIVLVDNVITTQFNFPLQPGMKVLISKDKNKKEFRHPLLKIVYEDAYIIVVEKKEGLLSVGTERQKERTAQHILSEYVGRSGRGNRIYVVHRLDRDTSGLMMFAKDEKTQYTLRDHWHDIVTDRRYVAVVTGEMEKDSDTVVSWLTDRTLYVSSSSYDDGGSKSITHYRTIKRANGYSLVELRLETGRKNQIRVHMQDLGHPLIGDGRYGIDGGPNPLGRLALHAFKLCFYHPVTDQLMEFETPYPPTFKKLFLKK
>NZ_CP012706.1|WP_005788070.1|2129757_2131176_+|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD
MARKKKELPLLEKVTITDVAAEGKAIAKVDDLVVFVPYVVPGDVVDLQVKRKKNKYAEAEAVKFHELSPVRAVPFCQHYGVCGGCKWQVLPYAEQIKYKQKQVEDNLRRIGKIELPEISPILGSAKTEFYRNKLEFTFSNKRWLTAEEVKQDVKYDQMNAVGFHIPGAFDKVLAIEKCWLQDDISNRIRNTIRDYAYEHNYSFINLRSQEGMLRNMIVRTSSTGELMVILICKITEEHEMDLFKQLLQYVADQFPEITSLLYIINNKCNDTINDLDVHVFRGNDHIFEEMEGLRFKVGPKSFYQTNSEQAYNLYKVARDFAGLTGDELVYDLYTGTGTIANFVSRQARKVIGIEYVPEAIEDAKVNAEINGIENTLFFAGDMKDILTQDFINQYGRPDVIITDPPRAGMHQDVVDVILFAEPKRIVYVSCNPATQARDLQLLDVKYRVKAVQPVDMFPHTHHVENVVLLELK
>NZ_CP012706.1|WP_065344504.1|2126770_2129491_-|pyruvate,-phosphate-dikinase
MDKKRVYTFGNGLAEGKAGMRNLLGGKGANLAEMNLIGVPVPPGFTITTDVCTEYYEMGQEKVVSLLKEEVEKAIANIENLMRSKFGDVENPLLVSVRSGARASMPGMMDTILNLGLNDEVVEGLTRKTGNARFAWDSYRRFVQMYGDVVLGMKPVNKEDQDPFEAIIEEVKHAKGVKLDNELEVEDLKELVKKFKAAVKAQTGKDFPTCAYEQLWGAICAVFNSWMNERAILYRKMEGIPDEWGTAVSVQAMVFGNMGDTSATGVCFSRDAATGEDLFNGEYLINAQGEDVVAGIRTPQQITKIGSQRWAQLAGVSEEERASKYPSMEEAMPEIYKQLDELQTKLENHYKDMQDMEFTVQEGKLWFLQTRNGKRTGAAMVKIAMDLFRQGMIDEKTALMRVEPNKLDELLHPVFDKSALKQAKVLTRGLPASPGAATGQIVFFADDAAEWHAAGKRVVMVRIETSPEDLAGMAVAEGILTARGGMTSHAAVVARGMGKCCVSGAGALNIDYKARTVEVDGVLLKEGDFISLNGSTGEVYQGKVETKAAELSGDFADLMKLADKYTRLQVRTNADTPHDAEVARNFGAVGIGLCRTEHMFFEGEKIKAMREMILAENAEGRRKALAKILPYQQADFKGIFKAMAGCPVTVRLLDPPLHEFVPHDLKGQQEMADTMGVSLQYIQQRVESLCEHNPMLGHRGCRLGNTYPEITQMQTRAILGAALELKKEGIETHPEIMVPLTGILYEFQQQESVIRAEADKLFEEVGDRIDFKVGTMIEIPRAALTADRIASSAEFFSFGTNDLTQMTFGYSRDDIASFLPVYLEKKILKVDPFQVLDQNGVGQLVRMATEKGRAIRPDLKCGICGEHGGEPSSVKFCHKVGLNYVSCSPFRVPIARLAAAQAAIEG
>NZ_CP012706.1|WP_014298998.1|2125383_2126592_-|integrase
MANFKVCVRNQRSDKLFSVYIRITHNRRIGYIKTDKVVDKSKLRKGEIKDPDILSYCSNLIRGYNDRLNAVEISTWDIHEVMFYLQSIDEDISFSQYARKYVFEMATIRNMVRNAKNYRWAYQSLERFAGTNNILFSKLTSKFIQDWMNSLSGTNRAKEMYPTCIRMIYNAALEEYNDYDKNIIRIKLQPFRKIEIPKADVPEKRALDIPILQKFFYGAIPETKLKASLPELSRDVAEMVFCLAGMNTADLFELRKGNLKGEVLCYHRQKTKKFRRDGAYLEVKIPTRLLPLFEKYKSNNDYLLNFAERYQDSNCFNINVNSGLKPYCNYNGLPKICIYNFRHSWATIAQNNCGASTAEVGFALNHSSAHRVTEGYIKKDYSPISVLNEKVIACVFGGEDLK
>NZ_CP012706.1|WP_014298997.1|2123650_2125222_-|hypothetical-protein
MYFDILFNYKWLSRLFKRVRKTANHKFNSIFMALAFKGHRRDIVLPKNFSLESHLASYPPDEYGFATSDLKFSKDKVYYFLSLLSTIPARNKDLIDENGWVPIHTKTIRDKIKDIGLYKDYLIRTGVLECDNIYIPKVKSRCYRWSRNYIKWGFQVCNVICKHEEEAYFMQEEADEELTNSPYLYYWYNSKRLSINPIVQQYAEATLNDKMGDKSKWSINVHTNQLKNPLVQYMAALTNICKIEQNKYEIHIDNTVHRLHSVITNLQKDYRNFLTYNGQELVSIDIKNSQPYLACALLNPMFWHINNELSLSLYSLPEDIQRTITTVATPLKVEKLFQNCTDEDFNQYKEIVSNGKMYETMAEVCQASLHKPIDRKEAKILMFYLLFSSNQGQHDDITINQMRKIFSSELFPKVAELFKLIKHKYKHVEEEKQHNRLACLLQSIESEIILHRCCKRIWEEGNQQIPVFTIHDSIATTTEHVEYVKRVMKEELFKAIGVFPTLSIEYWNLSQVEHRDMLPQIQA
>NZ_CP012706.1|WP_004289510.1|2123171_2123444_-|hypothetical-protein
MERNLKFLKTMSVAEFKAQHNVEKIEVKRNEHTGKCFFVYGFETGACSRKVETGELTIPVISEVCSAETGDIFLLLHQKGEGGATTLATL
>NZ_CP012706.1|WP_014298996.1|2122191_2123082_-|AAA-family-ATPase
MLNLRVSSKKQAKIKLALQGCAGSGKTYSALLLAYGLTNDWTKIAIIDSENGSADLYAHLGNYNVLPLQDNFTPETYIEAIKVCEDAKMEVIIIDSISQCWDNLLEYHANLQGNSFTNWQKITPRMNAFMQKILQSPSHVICTMRCKQDYVLSEKNGKMIPEKVGLKAVMRDGIDYEFTIVLDINMKHQAIASKDRTSLFIGKPDFTITPTTGQIILDWCNNGINLDMIKQKINQAKTIEELTSIYHQYPEWYQQLTSDFMQKKMQLQEENNKPIINYNPNFIHYGSNAVNASTQN
>NZ_CP012706.1|WP_041161383.1|2121176_2122229_-|DUF3871-family-protein
MEAMQLMPVHRTNMLIQTFNQPKFEIETPVETIEAEIISSRRENKRLPFIEANTKEVTIQHLREECVVPVFSKDNEITISHPSFIEMVWEAANQIFPNERIEEPAIRVSHVIKGRTPEAIHKPVKDLLESDKTIYYERMMFCFEIPTINEDIEGNRLNLTIGGVRSYNHENLYSKKGVEKFKVFIGFKNLVCCNMCVSTDGYKSELKVMSINDLLASSMKLFQEYNISKHLYYMGALKDSYMTESQFAQFLGKSRLYQYLPVEQKKRLPQMLMTDTQIGLVAKAYYNDDNFALPENQSAISMWNVYNLLTGANKSSYIDNFLDRSLNAIQLTEGLNKALYGENEYSWFIQ
>NZ_CP012706.1|WP_010993063.1|2134063_2134327_-|CRISPR-associated-endonuclease-Cas2
MYVIFVYDFGEKRVSKMLRLCRRYLNWIQNSVFEGELSEVRLKELLLLAKGVMNPEEDCIIIFKGATQCSLEKEIVGKELANIDNFL
>NZ_CP012706.1|WP_010993064.1|2134953_2135625_-|CRISPR-associated-endoribonuclease-Cas6
MRIRIKTTSNEKILPFDYQGKLIGVIHKWLGNNELHDKISLYSFSWLLGGVMVDKKGYVFPNGAELLISFHEDQHLKKIIDSILLDSEIFYGLCVKDITIVGSPVFTEEPQRFFLASPIFIKRRIEEIMGYKYYFYDDQESNQLMTETLKHKMREAGLPEDDTLRVEFDISYSKKKKKMVTIHGIKSIANMCPVIIHGTQTSKRFAWVVGLGNGTGSGYGALI
>NZ_CP012706.1|WP_005788078.1|2136445_2137300_+|type-I-methionyl-aminopeptidase
MKKFIKGVRFTPSNYPDEIEDKIQKYRKQGYKLPPRKVLRTPEQIEGIRESAKINTALLNHIAENIREGMSTEEIDRLVYDFTTSHGAIPAPLNYEGFPKSVCTSINDVVCHGIPSSTEILKSGDIINVDVSTIYNGYFSDASRMFMIGEVSPEKQRLVQVTKECMEIGIAAAQPWARLGDVGAAIQEHAEKNGYSVVRDLCGHGVGIKFHEEPDVEHFGRRGTGMLILPGMTFTIEPMINMGTYEVFVDSADDWTVCTDDGLPSAQWENMILITETGNEILTY
>NZ_CP012706.1|WP_005793488.1|2137300_2138527_+|DNA-recombination-protein-RmuC
MELTLLLIIAALLVALLALTLTRNNRAQSEEMQRALRQQMQENREELNRSIRELRMEMTQTLNQGLQQLQDAMHKNMMTTGELQRQKFDAMARQQETLIQSTEKRLDDMRVMVEEKLQKTLNERIGQSFEIVRSQLENVQKGLGEMKSLAQDVGGLKKVLSNVKMRGTFGEVQLGALLEQMMSPEQYEANVKTKKSGTEFVEFAIKLPGKDDANSTVYLPIDAKFPKDVYEQYYDAFEAGDAALMESCGRQLETTIKKMAKDIHDKYVDPPFTTDFAILFLPFESIYAEVIRRTSLVETLQKDYKIVVTGPTTLGAILNSLQMGFRTLAIQKRTGEVWTVLGAVKTEFGKFGGLLEKVQKNLQSAGDQLEEVMGKRTRAIERKLRQVEELPHEESRRILPIDDGGEDD
>NZ_CP012706.1|WP_008660466.1|2138554_2139301_+|DUF169-domain-containing-protein
MEITLKNQFITLWNTYFPQAGLPITFQYSADTQNLPIVEAPKGHRCIIAQLTQVQRGKTLCMQADSVGCRGGKRYTNFTDKMFPGFECFLSHNEQGEGERYKQTPELAAAALAQLPVLPVKGENLIFKRWDKLEAEDMPEVVIFFVSADILSGLFTLACFDNVAPDAVIAPFGAGCASIIYHPYREQLDGTNRAVLGSFDPSARKCMKPDLLSFAIPFNKFKSMVSQMEESFLKTATWDVIKKRMGSS
>NZ_CP012706.1|WP_005788084.1|2139500_2140814_-|Na+/H+-antiporter-NhaA
MTVLRSMKDFSSMNITASILLFVTAIAAAVIANSPAASVYQEFLSHELHFRIGGFNLLSHAGHNLTMIEFINDGLMTIFFLMVGLEIKRELLVGELSSFRKAALPFIAACGGMVVPVVIYSMVCAPGTEGGQGLAIPMATDIAFSLGVLSLLGKRVPLSLKIFLTAFAVVDDIGGILVIAIFYSSHVAYEYLLWAALLYVLLYFIGKKGATNKIFFLVVGVVIWYLFLQSGIHSTISGVILAFVIPAKPQLNVGTYIERIRRIISTFPEMGANNIVLTNQQIAKLKEVESASDRVISPLQSLEDNLHGAVNYLVLPLFAFVNAGVMFSGEGEVIGGVTLAVALGLLAGKFLGIYSFTWLAVKSGLTPMPLGMNWKNISGVALLGGIGFTVSLFIANLSFGSAHPVLLNQAKLGVLSGTVMAGILGYLVLHWVLPQRR
>NZ_CP012706.1|WP_005788087.1|2140858_2142037_-|sodium:proton-antiporter
MRKVLSFSAFLIIGLLLSQYLPLLAGEGYATVKIVSNILLYICLSFIMINVGREFEVDKTRWRSYAGDYFIAMATAAMPWFLIAIYYVFVLLPPEFWNSWEAWKENLLLSRFAAPTSAGILFTMLAAIGLKSSWIYKKIQVLAIFDDLDTILLMIPLQIMMIGLRWQLIVVVFIVFLLLSLGWKQLGRYNWRQDWKAIMGYSVLVFVATQAVYYFSKQLYGEEGSIHIEVLLPAFVLGMIMKHKEIDTPVEHKVSTGVSFLFMFLVGMSMPHFIGVNFAETHAGTHSVTGSQEMMSWGMIALHVLIVSLLSNIGKLFPVFFYRDRKFSERLALSIGMFTRGEVGAGVIFIALGYNLGGPALVISVLTIVLNLILTGIFVLWVKKLALRSYTT
>NZ_CP012706.1|WP_005788089.1|2142182_2143964_-|elongation-factor-4
MDKIRNFCIIAHIDHGKSTLADRLLEFTNTIQVTEGQMLDDMDLEKERGITIKSHAIQMEYTYKGEKYILNLIDTPGHVDFSYEVSRSIAACEGALLIVDASQGVQAQTISNLYMAIEHDLEIIPIINKCDMASAMPEEVEDEIVELLGCKRDEIIRASGKTGMGVEEILAAVIERIPHPQGDESAPLQALIFDSVFNSFRGIIAYFKITNGVIRAGDKVKFFNTGKEYVADEIGVLKMEMVPRKELRTGDVGYIISGIKTSKEVKVGDTITHVARPCDKAIAGFEEVKPMVFAGVYPIEAEEFEDLRASLEKLQLNDASLTFQPESSLALGFGFRCGFLGLLHMEIVQERLDREFDMNVITTVPNVSYHIYDKQGNMTEVHNPGGMPDPTMIDHIEEPYIKASIITTTDYIGPIMTLCLGKRGELLKQEYISGNRVELFYNMPLGEIVIDFYDRLKSISKGYASFDYHPDGFRPSKLVKLDILLNGESVDALSTLTHFDNAYDMGRRMCEKLKELIPRQQFEIAIQAAIGAKIIARETIKAVRKDVTAKCYGGDISRKRKLLEKQKKGKKRMKQIGNVEVPQKAFLAVLKLD
>NZ_CP012706.1|WP_005788091.1|2144089_2144290_-|winged-helix-turn-helix-domain-containing-protein
MLKEKAGEIAGKIWNALNGTEGLTAKQIKKATKLVDKDLFLGLGWLLREDKISTQEIEGELFVTLN
>NZ_CP012706.1|WP_005793479.1|2144436_2144901_-|hypothetical-protein
MTKEERISRATELFKSGYNCSQSVVAAFADMYGFTEEQALRMAASFGGGIGRMRETCGAACGMFLLAGLEKGAIDGADREGKAANYALVQELAAEFKKRNGSLNCGELLGLKKKAPVSSEPEARTEQYYAKRPCSKMVEEAARIWAEYLEKEKK

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Crispr_ID: NZ_CP012706_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP012706_4

2381913-2382006

Orphan

Consensus_repeat	Method
CACAGATGGAGAATTGAATTTTCCCCGGAATC	CRISPRCasFinder

1 spacers

PrimPol

The CRISPR arrays of NZ_CP012706_4

>merge|NZ_CP012706|4|2381913-2382006|CRISPRCasFinder
CACAGATGGAGAATTGAATTTTCCCCGGAATCATTCAGTTCACCACAGATTACACAGATTAACACAGATAGAGAATTGAATTTTCCCCGGAATC

>NZ_CP012706|4|3|2381913-2382006|CRISPRCasFinder
CACAGATGGAGAATTGAATTTTCCCCGGAATC	ATTCAGTTCACCACAGATTACACAGATTAA
CACAGATAGAGAATTGAATTTTCCCCGGAATC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP012706.1\|WP_005798526.1\|2380994_2381447_-\|DNA-binding-protein	unknown	unknown	gnl\|CDD\|375718
NZ_CP012706.1\|WP_065344532.1\|2386810_2387830_+\|acyltransferase	unknown	unknown	gnl\|CDD\|376607
NZ_CP012706.1\|WP_155760240.1\|2382203_2384510_-\|DUF3987-domain-containing-protein	PrimPol	pfam08800_PrimPol_CAS-I:CAS-III	gnl\|CDD\|379041
NZ_CP012706.1\|WP_065344527.1\|2377791_2380197_+\|polysaccharide-biosynthesis-tyrosine-autokinase	unknown	unknown	gnl\|CDD\|273392
NZ_CP012706.1\|WP_005788605.1\|2375429_2376833_+\|undecaprenyl-phosphate-glucose-phosphotransferase	unknown	unknown	gnl\|CDD\|274396
NZ_CP012706.1\|WP_081293138.1\|2384575_2384773_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP012706.1\|WP_065344530.1\|2385239_2385758_+\|UpxY-family-transcription-antiterminator	unknown	unknown	gnl\|CDD\|193584
NZ_CP012706.1\|WP_065344535.1\|2389805_2390975_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP012706.1\|WP_065344536.1\|2391082_2392111_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP012706.1\|WP_005788598.1\|2372535_2373117_+\|membrane-protein	unknown	unknown	gnl\|CDD\|225786
NZ_CP012706.1\|WP_005788611.1\|2376989_2377778_+\|sugar-transporter	unknown	unknown	gnl\|CDD\|224512
NZ_CP012706.1\|WP_065344537.1\|2392118_2393651_+\|oligosaccharide-flippase-family-protein	unknown	unknown	gnl\|CDD\|240533
NZ_CP012706.1\|WP_005803229.1\|2373255_2373849_-\|serine-type-multi-promoter-DNA-invertase-Mpi	unknown	unknown	gnl\|CDD\|184041
NZ_CP012706.1\|WP_005788603.1\|2373864_2375004_+\|site-specific-integrase	unknown	unknown	gnl\|CDD\|271185
NZ_CP012706.1\|WP_081293139.1\|2385813_2386806_+\|acyltransferase	unknown	unknown	gnl\|CDD\|226122
NZ_CP012706.1\|WP_005788597.1\|2371941_2372442_-\|thiol-peroxidase	unknown	unknown	gnl\|CDD\|179055
NZ_CP012706.1\|WP_081293140.1\|2388822_2389755_+\|polysaccharide-pyruvyl-transferase-family-protein	unknown	unknown	gnl\|CDD\|377253
NZ_CP012706.1\|WP_032561485.1\|2381638_2381887_+\|DUF4248-domain-containing-protein	unknown	unknown	gnl\|CDD\|372895
NZ_CP012706.1\|WP_011203000.1\|2380326_2380800_-\|N-acetylmuramoyl-L-alanine-amidase	unknown	unknown	gnl\|CDD\|177282
NZ_CP012706.1\|WP_065344533.1\|2387868_2388798_+\|glycosyltransferase-family-8-protein	unknown	unknown	gnl\|CDD\|133037

Protein	Function_ID	Function_description	E-value
NZ_CP012706.1\|WP_005798526.1\|2380994_2381447_-\|DNA-binding-protein	gnl\|CDD\|375718	pfam18291, HU-HIG, HU domain fused to wHTH, Ig, or Glycine-rich motif. Rapidly-diverging family of HU domains predominantly observed in the bacteroidetes lineage with a predicted role in recognition and possible interception of the DNA of parasitic elements, a counter-conflict strategy preventing incorporation of these elements into the host genome.	5.55006e-43
NZ_CP012706.1\|WP_065344532.1\|2386810_2387830_+\|acyltransferase	gnl\|CDD\|376607	pfam01757, Acyl_transf_3, Acyltransferase family. This family includes a range of acyltransferase enzymes. This domain is found in many as yet uncharacterized C. elegans proteins and it is approximately 300 amino acids long.	4.57193e-10
NZ_CP012706.1\|WP_155760240.1\|2382203_2384510_-\|DUF3987-domain-containing-protein	gnl\|CDD\|379041	pfam13148, DUF3987, Protein of unknown function (DUF3987). A family of uncharacterized proteins found by clustering human gut metagenomic sequences.	5.45641e-75
NZ_CP012706.1\|WP_065344527.1\|2377791_2380197_+\|polysaccharide-biosynthesis-tyrosine-autokinase	gnl\|CDD\|273392	TIGR01007, Tyrosine-protein_kinase_CpsD, capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids].	9.37431e-52
NZ_CP012706.1\|WP_005788605.1\|2375429_2376833_+\|undecaprenyl-phosphate-glucose-phosphotransferase	gnl\|CDD\|274396	TIGR03023, Sugar_transferase., Undecaprenyl-phosphate glucose phosphotransferase. This family of proteins encompasses the E. coli WcaJ protein involved in colanic acid biosynthesis, the Methylobacillus EpsB protein involved in methanolan biosynthesis, as well as the GumD protein involved in the biosynthesis of xanthan. All of these are closely related to the well-characterized WbaP (formerly RfbP) protein, which is the first enzyme in O-antigen biosynthesis in Salmonella typhimurium. The enzyme transfers galactose from UDP-galactose (NOTE: not glucose) to a polyprenyl carrier (utilizing the highly conserved C-terminal sugar transferase domain, pfam02397) a reaction which takes place at the cytoplasmic face of the inner membrane. The N-terminal hydrophobic domain is then believed to facilitate the "flippase" function of transferring the liposaccharide unit from the cytoplasmic face to the periplasmic face of the inner membrane. Most of these genes are found within large operons dedicated to the production of complex exopolysaccharides such as the enterobacterial O-antigen. Colanic acid biosynthesis utilizes a glucose-undecaprenyl carrier, knockout of EpsB abolishes incorporation of UDP-glucose into the lipid phase, and the C-terminal portion of GumD has been shown to be responsible for the glucosyl-1-transferase activity.	0
NZ_CP012706.1\|WP_065344530.1\|2385239_2385758_+\|UpxY-family-transcription-antiterminator	gnl\|CDD\|193584	cd09895, NGN_SP_UpxY, N-Utilization Substance G (NusG) N-terminal domain in the NusG Specialized Paralog (SP), UpxY. The N-Utilization Substance G (NusG) proteins are involved in transcription elongation and termination. NusG is essential in Escherichia coli and is associated with RNA polymerase elongation and Rho-termination. Paralogs of eubacterial NusG, NusG SP (Specialized Paralog of NusG), are more diverse and often found as the first ORF in operons encoding secreted proteins and LPS (lipopolysaccharide) biosynthesis genes. NusG SP family members are operon-specific transcriptional antitermination factors. UpxY proteins, UpxY proteins, where the x is replaced by the letter designation of the specific polysaccharide (UpaY to UphY), are a family of NusG SP factors that act specifically in transcriptional antitermination of operons from which they are encoded. UpxYs are necessary and specific for transcription regulation of the polysaccharide biosynthesis operon. Orthologs of the NusG gene exist in all bacteria, but their functions and requirements are different. The NusG N-terminal (NGN) domain is similar in all NusG orthologs, but its C-terminal domain and the linker that separate these two domains are different. The domain organization of NusG and its orthologs suggests that the common properties of NusG and its orthologs and paralogs are due to their similar NGN domains.	1.00098e-33
NZ_CP012706.1\|WP_005788598.1\|2372535_2373117_+\|membrane-protein	gnl\|CDD\|225786	COG3247, HdeD, Uncharacterized conserved protein [Function unknown].	2.62447e-16
NZ_CP012706.1\|WP_005788611.1\|2376989_2377778_+\|sugar-transporter	gnl\|CDD\|224512	COG1596, Wza, Periplasmic protein involved in polysaccharide export, contains SLBB domain of b-grasp fold [Cell wall/membrane/envelope biogenesis].	8.27501e-19
NZ_CP012706.1\|WP_065344537.1\|2392118_2393651_+\|oligosaccharide-flippase-family-protein	gnl\|CDD\|240533	cd13128, MATE_Wzx_like, Wzx, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins. Escherichia coli Wzx and related proteins from other gram-negative bacteria are thought to act as flippases, assisting in the membrane translocation of lipopolysaccharides including those containing O-antigens. Proteins from the MATE family are involved in exporting metabolites across the cell membrane and are often responsible for multidrug resistance (MDR).	9.60718e-15
NZ_CP012706.1\|WP_005803229.1\|2373255_2373849_-\|serine-type-multi-promoter-DNA-invertase-Mpi	gnl\|CDD\|184041	PRK13413, mpi, master DNA invertase Mpi family serine-type recombinase.	1.43067e-108
NZ_CP012706.1\|WP_005788603.1\|2373864_2375004_+\|site-specific-integrase	gnl\|CDD\|271185	cd01185, INTN1_C_like, Integrase IntN1 of Bacteroides mobilizable transposon NBU1 and similar proteins, C-terminal catalytic domain. IntN1 is a tyrosine recombinase for the integration and excision of Bacteroides mobilizable transposon NBU1 from the host chromosome. IntN1 does not require strict homology between the recombining sites seen with other tyrosine recombinases. This family belongs to the superfamily of DNA breaking-rejoining enzymes, which share the same fold in their catalytic domain and the overall reaction mechanism. The catalytic domain contains six conserved active site residues. Their overall reaction mechanism involves cleavage of a single strand of a DNA duplex by nucleophilic attack of a conserved tyrosine to give a 3' phosphotyrosyl protein-DNA adduct. In the second rejoining step, a terminal 5' hydroxyl attacks the covalent adduct to release the enzyme and generate duplex DNA.	4.54876e-26
NZ_CP012706.1\|WP_081293139.1\|2385813_2386806_+\|acyltransferase	gnl\|CDD\|226122	COG3594, NolL, Fucose 4-O-acetylase and related acetyltransferases [Carbohydrate transport and metabolism].	2.84801e-11
NZ_CP012706.1\|WP_005788597.1\|2371941_2372442_-\|thiol-peroxidase	gnl\|CDD\|179055	PRK00522, tpx, thiol peroxidase.	1.46663e-97
NZ_CP012706.1\|WP_081293140.1\|2388822_2389755_+\|polysaccharide-pyruvyl-transferase-family-protein	gnl\|CDD\|377253	pfam04230, PS_pyruv_trans, Polysaccharide pyruvyl transferase. Pyruvyl-transferases involved in peptidoglycan-associated polymer biosynthesis. CsaB in Bacillus anthracis is necessary for the non-covalent anchoring of proteins containing an SLH (S-layer homology) domain to peptidoglycan-associated pyruvylated polysaccharides. WcaK and AmsJ are involved in the biosynthesis of colanic acid in Escherichia coli and of amylovoran in Erwinia amylovora.	2.26109e-07
NZ_CP012706.1\|WP_032561485.1\|2381638_2381887_+\|DUF4248-domain-containing-protein	gnl\|CDD\|372895	pfam14053, DUF4248, Domain of unknown function (DUF4248). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 73 and 86 amino acids in length.	3.12725e-29
NZ_CP012706.1\|WP_011203000.1\|2380326_2380800_-\|N-acetylmuramoyl-L-alanine-amidase	gnl\|CDD\|177282	PHA00447, PHA00447, lysozyme.	3.17306e-37
NZ_CP012706.1\|WP_065344533.1\|2387868_2388798_+\|glycosyltransferase-family-8-protein	gnl\|CDD\|133037	cd04194, GT8_A4GalT_like, A4GalT_like proteins catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface. The members of this family of glycosyltransferases catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface. The enzymes exhibit broad substrate specificities. The known functions found in this family include: Alpha-1,4-galactosyltransferase, LOS-alpha-1,3-D-galactosyltransferase, UDP-glucose:(galactosyl) LPS alpha1,2-glucosyltransferase, UDP-galactose: (glucosyl) LPS alpha1,2-galactosyltransferase, and UDP-glucose:(glucosyl) LPS alpha1,2-glucosyltransferase. Alpha-1,4-galactosyltransferase from N. meningitidis adds an alpha-galactose from UDP-Gal (the donor) to a terminal lactose (the acceptor) of the LOS structure of outer membrane. LOSs are virulence factors that enable the organism to evade the immune system of host cells. In E. coli, the three alpha-1,2-glycosyltransferases, that are involved in the synthesis of the outer core region of the LPS, are all members of this family. The three enzymes share 40 % of sequence identity, but have different sugar donor or acceptor specificities, representing the structural diversity of LPS.	3.85839e-60

>NZ_CP012706.1|WP_032561485.1|2381638_2381887_+|DUF4248-domain-containing-protein
MNQRKEEDTTEADFIIRSYTKAELAQLYCPGLDPVLALQKLYRWMRKNTALTQALSEVNYNKYRHSFLKREVRLIVYYLGEP
>NZ_CP012706.1|WP_005798526.1|2380994_2381447_-|DNA-binding-protein
MSKEVTYSVVARKNMLKKDDPAKYYAQAQASGDVGLDEISTRVEKACTVHSADVVAVLKALEDEMVDGLSRGEIVRLGNIGTFQVGLRSRGAEKAEEFKAANISKARVNFRPGPVLADAMKTLNFSKVSTRAAQKGDGGGDGDIVDDPTA
>NZ_CP012706.1|WP_011203000.1|2380326_2380800_-|N-acetylmuramoyl-L-alanine-amidase
MSKNEGGSMRKIDLIVIHCSATREDRCFTEFDLDVCHRRRGFNGPGYHFYIRKDGRIVSTRPVEKIGAHAKGHNATSIGICYEGGLDARGRPKDTRTEWQVHSMRVLVKTLLKQYPGSRVCGHRDLSPDLNANGEIEPEEWIKQCPCFNVIEDKKLH
>NZ_CP012706.1|WP_065344527.1|2377791_2380197_+|polysaccharide-biosynthesis-tyrosine-autokinase
MKEDLYDDLYEEKEEKIDFHALLFRYVIRWPWFVASVIICLAGAWLHLRQTTPVYNISASVIIKDDKKGGNSGGNLAALEGLGLVNSVSNIDNEIEILRSKTLVKHVVSELNLYTTYSVKGSFNEVELYKSSPVLVGLTPQEADRLPGPAVFELTLSPGNRLDVKATVGETSYNKKFSKMPGLLVTPAGTFTFTLAGDSAGVSEPQTLTAVVSNPMQTAKRYAAALSVEPTSKTTSIVIVSLKNTNKRRGEDFINRLIEVYNRNTNNDKNEVAEKTEEFIAGRIRIINDELFSTEKELETFKRDAGLTDLASDAQLAVSENSAYEKQRVENGTQLNLVRYLAEYISAPDKINAVLPVNVGLTDQSLSSLIGQYNEMVLQRNRLLRNSSESNPVIVNLDSGIRAMRENILTTIHSVQKGLLITKADLDRQANKFNRRISNAPAQERQFVSISRQQEIKAGLYLMLLQKREENSIALAATANNAKIVDEAMADNGPVSPKTKTIYMIALVMGMGIPVAIIYVMGLLQFRIEGRADVEKLTSAPIIGDIPLAEEGNGKAGGIAVRENENSLMAETFRGIRTNLQFMLGEENKVILVTSTISGEGKTFVATNLAISLSLLGKKVVIVGLDIRKPGLNKVFNLSQKEKGITQFLAGPQTTDLMSMVQPSGISRTLSILPGGTVPPNPTELLARQALVEAIDILKKHFDYIVLDTAPIGMVTDTQIIARVADLSVYVCRADYTHKADYTLLEDLRLGNKLPNLCTVINGLDMKKRKYGYYYGYGKYGRYYGYGKKYGYGYGYGQKHN
>NZ_CP012706.1|WP_005788611.1|2376989_2377778_+|sugar-transporter
MTKRLLFFTLTCILLASCQSYKKVPYLQDPGEAQRAVAEAKLYDARILPKDLLTIVVSCSDPELAEPFNLTVSTPVSNTQKSLTSQPALQQYLVDNRGNIDFPVLGTLHIGGLTKGEAESLIREKLKGYIKENTIVTVRMANYKISVIGEVNRPGTFTISNEKVNLFEALAMAGDMTVYGLRDNVRLIREDADGHQHIITLNMNRADIIQSPYYYLQQNDILYVTPNKTKAKTADISASTTIWFSVVSTLVSLASLIITIAK
>NZ_CP012706.1|WP_005788605.1|2375429_2376833_+|undecaprenyl-phosphate-glucose-phosphotransferase
MKQVLRFNKVIKRIVFTGDLILLNGTFLSLYTLLGSKFFADPFIHSLPQVLVLLNLCYLVSNMSSGIILHRRVVRPEQIVWRALRNSAGHALFFSCALTFGNFGILSARFFLLFYIAFTLLLVCYRLLFRKILKSYRKHGGNSRSIILVGSNSNIIELYHQMTDDVTSGFRVIGYFDDQPGSRFPEKVNYLGKPGKIVDRLKQGGVEQVYCCLPSARSEEILPIIDYCENHLIRFFSVPNVRSYLKRRMYFELLGNVPVLCIRQEPLSFAENRFRKRVFDIAFSLLFLCTLFPIIYVIVGLTIKITSPGPIFFKQKRSGEDGREFWCYKFRSMKVNTQSDTLQATLHDPRKTRFGNFLRKSSIDELPQFINVLMGDMSVVGPRPHMLKHTEQYSQLINKYMVRHFVKPGVTGWAQVTGFRGETHELWQMEGRVQRDIWYIEHWTFMLDLYIIYKTVRNALEGEKEAY
>NZ_CP012706.1|WP_005788603.1|2373864_2375004_+|site-specific-integrase
MINTPRKNGYSFKYGTLFYVPFFSCHLGISETFIRLYIYAIDFLLISSIFSNLSLKIFFIINRVLEHTKKNKKMEIEKFIKSLARKAKLGGRYSTANTYLYTLHSFQKFAGKASLTFEEITPESIKEYEQYLILNGKRYNTISLYMRMLRSICNQASEQNIASLNTRELFENVFIGNEPTAKRAISPAIISRLLEADFSKNSRLDFARDLFLLSFYLRGIPFVDLVHLRKTDVQGNMLVYFRQKTGQQLTVIIENCAKVILRKYASLCKESVYLLPVISAAGEEGHKQYRSALRVYNKRLNQISGILKLKTPLTSYVARHSWATTALQKGVPVSVISAGMGHASEKVTYIYLASFDNKTLSNANKKVIAAVRFKKEEEE
>NZ_CP012706.1|WP_005803229.1|2373255_2373849_-|serine-type-multi-promoter-DNA-invertase-Mpi
MVIAYLRVSTEKQFLANQKEEIMRFAEKNGLSIDKWYTETVSGSVSTKDRKLSELLKRMHPGDTLIVTEISRLSRTLLEIMTILNFCIKKQVVLYSTKEGYVFQDDINSKVLGFAFGLMAEIERNLISMRTKEALARRKQEGMTLGRKKGDTPKIKLLRANKRVLTKELDKGTTYSELAEKMGVSRTTLFRFMKTMY
>NZ_CP012706.1|WP_005788598.1|2372535_2373117_+|membrane-protein
MKTLFDEMEHAVKNWWLSLILGILYIIVALCLLFAPGSSYIALSVIFSISMLISGIIEIIFSISNRRGISSWGWYLAGGIIDLILGIYLVAYPLLSMEVIPFIVAFWMMFRGFSATGYSMDLKRYGTREWGWYMGFGILAIICSLIILWQPAVGALYVIYMLAFTFLIIGFFRVMLSFELKSLHKRSTVMNGK
>NZ_CP012706.1|WP_005788597.1|2371941_2372442_-|thiol-peroxidase
MATTNFKGQPVKLIGEFIQVGKVAPDFELVKSDLSSFALKDLKGKNIVLNIFPSLDTGVCATSVRKFNKMAAGMKDTVVLAISKDLPFAQGRFCTTEGIENVIPLSDFRFSDFDESYGVRMADGPLAGLLARAVVVIGKDGKVAYTELVPEITQEPDYEKALAAVK
>NZ_CP012706.1|WP_155760240.1|2382203_2384510_-|DUF3987-domain-containing-protein
MEEFHNDLRGARWKVLAESYRRWMRTGMTEEGKRLKGALNAVVVAGKCRGGHAANQVTELNGLALFDFDHCLEMLAGMKEKAGALPYVVGAFVSISGEGLKLIVRIDAENAGQYAVAYPVVARELERVLGHPCDMSCRDLGRACYASYDPEAYYNPGAGVFPWREQVDGLLQAEGECSAQSVGKACPAGVASEAGDGFMQVFLNDFDARNPFVAGGRHAFVLKLGRVARYKGFSPEEMRLLQKAVVEKYAQADFGSGEIEKTLSSGYQYVSARRADAMTTDLGPKVQGPFYGMPEEEEEEDLEDILFGKSEGFRRSAPYFPDEVFEHLPALLAEGVRVAGSPRERDMLLAAMIVNISACLPEVRLLYDQMYYSPHLYYMVIAHAGGGKGVVGLAGMLPAEIHKFYEKQNDEVRLVYDKAFFEWELEQKKAQAEKRSPDFALRPREPLRKLLMLSPNVSKSLIISALEESGKLGCCINATELDMVSGAIRNECGKHDDVFRAAFQHEVVSADFKVNGRQVVARHPRLALCLAGTPNQLVRFIPSLENGLYSRFLIYTGQSAWEWRSAAPRAGCEDHRAVFARLSARLLELHQFLLQSPTEVTFTPGQWEEHTLRFASHLSEVVNERDDSPGAIVLRHGLMASRIACVLTALRKGECAWAMPEYACSDEDFHTAMLMTDVLLEHSLLLSTCMQKSESKPKPLKPYFRLRPVLQVLSGTFTFTQVVDKAVEMGIPKTTAKRLFRKTIELKLVVKEGDVYRKTTRSWGAGIP
>NZ_CP012706.1|WP_081293138.1|2384575_2384773_-|hypothetical-protein
MAKVGCGWVWRLSEETFTAVLTFGSVKSLLFFCIMVHCRGCAVARVLLCAIGGGSGLKTLKFNTQ
>NZ_CP012706.1|WP_065344530.1|2385239_2385758_+|UpxY-family-transcription-antiterminator
MKSWLAAYVRLYHEKKTRDRLTSMGIESFLPVQEEIHQWSDRRKKIERVVIPMMIFVHVDPAERAEVLTLSSVSRYMVLRGQSTPAVIPDEQMERFRFMLDYSEEAIEVCSSPLAPGEQVRVIKGPLAGLEGELVTIDGKSKVAVRLDMLGCAHVDMPVGFVEKVGKMEAVR
>NZ_CP012706.1|WP_081293139.1|2385813_2386806_+|acyltransferase
MQQRIEYVDYMRGIAIILVVIGHLIQFNGFPTSNPVFEFIYSFHMPLFFAISGYITQKVTRVETLHQYFIYLKKKFITIALPLITWSLLVNPYLLKEEWKIMSWEEMLMTLQHPWLWFLKMLFVILVYYGIFNLLYHKLGRANFFNTGLALIPVILLTLISVYINIQEINLILFSYAFYLGCFIAKFPSIERFILKQSVYTLSFLSLFILATHWNFEGNRIDDIYKITISTFCFIFLLNFCRKFKFNEKVKSILQLFGTQSLAIYIIQFHLCKLGDGMINVYIQSINPFILFLISLIIAIPISYTCCIVAKAIYSNHLLSFLLFGKRIKS
>NZ_CP012706.1|WP_065344532.1|2386810_2387830_+|acyltransferase
MFLSFILLLLCIIARHQRSNRRLCEKRNLTDLVKLIAAIAVVVCHLFTFYMHNPAWAAESQFGSLSVSIFFFLSGYGLMCSYSLKGKKYLEGFCIHRISKIIIPLLTAYIIYIPILRLINHREGGVIEAIQRLFSSNPLLPYSWYVTEITLLYLLFYIVMRFVPRYKLPALSLAIVFMLAGMLLAGLPHWWINASPCFIIGLWYYKYEYPIMNQMNKVKKWHFITLILLFLCTYRLDIVQDHIQMLSRWRYTYASFYLVNILFILLVLYILQRVNFGKNIKVTQNCYYEIYLMQGTVFLLLDTMIHNRPLFFILSIVLTMISSSGMHWINKRIMKALKI
>NZ_CP012706.1|WP_065344533.1|2387868_2388798_+|glycosyltransferase-family-8-protein
MNNPYYIVIVTDEGYVQHAAVMLTSLFETNRGKRFHVHVLTNGLSQESESRISALCRKYDSFLAKHICSDAKIKDLPVGQWSTMMYYKLYIPTILPQEAEHCLFLDVDMVINADIAELYNIELSDNVIAAAEDIPDCILHKQRIGLSQNDLYINSGVMVCDLKKWRMLEYSQPIFNFTRSVAAKIQNEQDVIAMYFKDRIKALPIRWNMVTFYFMRKPKIFDKQLPQLKEAKRNPGIIHFACPIKPWFRDCNHPFGYLYRQYLQLTPWYDAHHRFPIFEQLTLRQRFNKHIKNILNDFNILRYNEHLTK
>NZ_CP012706.1|WP_081293140.1|2388822_2389755_+|polysaccharide-pyruvyl-transferase-family-protein
MKDPYKHSSFNIIITKIKTLLLDLFCHPICVNACLHYSWGKLMHRNWGDDTNVFLVERLFNRKVSYLYTSSISMRRNSTNYIMIGSTAVMLGNNRSVIWGAGIIDETVSLSTPPMKILAVRGPLTRKYFINNGVECPEVYGDPAMLTKLVYTPQHTTPTYKLGIIPHYSDFNHPALNKFKNNPEILIIRMEGYKDWHEIIDQICDCEYIASSSLHGLIMSETYGIPNLWIELSGKLMGGHFKFHDFFLSIHADREKPFIMRAKTSLADILATKSLYRKGYINLQPLIDAAPFPLFPQEWDHNKFRTVHHV
>NZ_CP012706.1|WP_065344535.1|2389805_2390975_+|hypothetical-protein
MNEIRIQEIIKTEDSIQAKIFINENEEIIKTTFNKEIANDTITDRIDAFVWGFLFFAFCEGYDIVSDIPITDELYYNLEFHFINALTGCNPSLHRIQIKAPLINGIKGERRIVATGISCGVDSLYTVAQHTSQHTPENNRINTLAFFNAGSSMKAADILRTPLVEGRLQIAKAFAAEYGFDFIFIETNLHLILNKYLTYSHIENNTYMALFCIYHIQNKIKTYYYSSGYSYAEFTLKRENHNAELDSEHYDLLTLSMASINNMRFYSAGGEANRLEKTKYIISYKPTQKYLNVCVNESQNDSKCFKCIRTLLTLDALNVVDDYRAVFDVDYYKAHRQTYIRRMYLDATFKSDSFYKEIIPYYRDQLTLPFKLRVFASVIKNKILDQFKS
>NZ_CP012706.1|WP_065344536.1|2391082_2392111_+|hypothetical-protein
MNTILVILPYFGKFPAMFPFWLESCRHNNTINFLIATDQNFKSPSPNIHVLQTTLQEVKQRIEKYVGFEVNLEKPYKLCDFRPTYPYIFAEYISKYDFWGYCDCDLVFGDIRYFLTEELLNRYDYLLGMGHFHIQRVNDPKYEEVWKTARGLWREIYWEDIFKSPDNEWFDELPFGVAGRYYEMYPDKFWSGFLPQGKCYEAPNPKYLYFYDVFNHREDCYKCPDYTKHQDRLSFWHRKPSEEELHHVIYLKNNITLHAVGVTKQGKLLQRPILYAHFYKRKLSIKTSNVSAYIIRPNTFINERKITKLYLLYYSHHPSIYYHKYLQKIKNRLNRYFHLDLK
>NZ_CP012706.1|WP_065344537.1|2392118_2393651_+|oligosaccharide-flippase-family-protein
MEQNNQRILKNTIYLYIRQFIIIALSFFSTRIVLEKLGASDYGINNVVGGFVSMFTVLNSILQTGTRRFLALNLGKDNSELMKRTFSTAFVIHLIVGIVIVILLETVGTWFLNTRLNINTDRMLAANWVFQFSVLAVFLNITQSPYTSIVTAYERFNIYAIMSIFDVIAKIAVLFLLIFIPGDKLIIYAALLLIVCILNIAIYRIYCIKHFNECAFSLKIDQSLFHEMMKFSGWSVIANVFQVANNQGLSLLLNIFFNTIVNAARGLAGTVTYAISTFVNGFIIASEPQLIKYYGAGDKKHFEQLIFNITQYTLFLISILAVPVFMEMDYVLELWLGEVPEYTSGFIKITMISSIVVNSYTMIDRGIMASGHIKQLALIANTIPIIVLPLVYLVLKLGFNPLVAYIVNVIPQFLGLFATLWIIKKYLGFPSMAFLRKVVLKTYLLIGLSCAIPYFVHCNMSSGLIRFLIVCSLSIISTITIMYIFALNKETRRMIRQKIISRFKKKQKNL

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Crispr_ID: NZ_CP012706_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP012706_5

3758696-3760579

TypeII

Consensus_repeat	Method
GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC	CRISPRCasFinder
GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC	PILER-CR

24 spacers

cas2,cas1,cas9

The CRISPR arrays of NZ_CP012706_5

>merge|NZ_CP012706|5|3758696-3760579|CRISPRCasFinder,PILER-CR
GTTATGATTTACTTTCAAATTAGTATCTTTGAACCATTGGAAACAGCGATTCGAAGATATGCAAATGTAGCAAGTATGTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGCTTTAAAGAACGAAAAAAACGAGTGGATCACGTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGCAGTTCTTCGCTGGTTGCCGCACTGTCTGCCGTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGCGCTGATCATAATAAGCCTGTTGAAGAGTCGTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGCTGATTTGGCATCTGCTATTTGATCAATCAGTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGCGCAATTACCCCAATCCTTCATGCCCTGAGAGTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGCGAAATAATTAGTAGAAGAGAATATACCACTGTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGCGTGTTCAGATATTCAAGGCAAGTGTCTGAAGTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGCGGTGTACTTGACAAAGGTAGGCAGGCAGGGTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGCTCAATATAGCGGCCAAATTGTCCCTTCGGTGTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGCGTTCCCTGTCTGCGAACATGAAACGCCGTGTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGCTTTGAGATTCAGAACTCGCCCATTCATTCTGTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGCGTTTGATGATAATAAAGGATATTCATCTAGTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGCTTTTGCAAAGCCTCAGCGGCACGGAGTTGGTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGCTCTGGATTCGTCTCTCCATAACCAAGATAGTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGCTTCCATATCTTATTATTCCACGACTCGCGAGTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGCGTACTAACAGATTCTTCCACGGCTTTGATAGTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGCGAAAAAGCTAATTGGCTTATCAAAAAATAGTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGCAGTATCAGCCTGAGTATTACCAAGAGCAGGTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGCAAGCCTCAAAAAAGACAGGTTCTTGTGTAGTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGCTTTCTGCTGCTGATTGGATGCCTATTACTAGTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGCTAGAACCGTCACGAATCAAATTCCAATATTGTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGCCACATAATCCAACAAAGGGGTAGCATGATGTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGCCAAAGCGCCAACTCTTAAGAACAAACTGTCGTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC

>NZ_CP012706|5|4|3758696-3760579|CRISPRCasFinder
GTTATGATTTACTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC	GATTCGAAGATATGCAAATGTAGCAAGTAT
GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC	TTTAAAGAACGAAAAAAACGAGTGGATCAC
GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC	AGTTCTTCGCTGGTTGCCGCACTGTCTGCC
GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC	GCTGATCATAATAAGCCTGTTGAAGAGTC
GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC	TGATTTGGCATCTGCTATTTGATCAATCA
GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC	GCAATTACCCCAATCCTTCATGCCCTGAGA
GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC	GAAATAATTAGTAGAAGAGAATATACCACT
GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC	GTGTTCAGATATTCAAGGCAAGTGTCTGAA
GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC	GGTGTACTTGACAAAGGTAGGCAGGCAGG
GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC	TCAATATAGCGGCCAAATTGTCCCTTCGGT
GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC	GTTCCCTGTCTGCGAACATGAAACGCCGT
GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC	TTTGAGATTCAGAACTCGCCCATTCATTCT
GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC	GTTTGATGATAATAAAGGATATTCATCTA
GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC	TTTTGCAAAGCCTCAGCGGCACGGAGTTG
GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC	TCTGGATTCGTCTCTCCATAACCAAGATA
GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC	TTCCATATCTTATTATTCCACGACTCGCGA
GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC	GTACTAACAGATTCTTCCACGGCTTTGATA
GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC	GAAAAAGCTAATTGGCTTATCAAAAAATA
GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC	AGTATCAGCCTGAGTATTACCAAGAGCAG
GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC	AAGCCTCAAAAAAGACAGGTTCTTGTGTA
GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC	TTTCTGCTGCTGATTGGATGCCTATTACTA
GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC	TAGAACCGTCACGAATCAAATTCCAATATT
GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC	CACATAATCCAACAAAGGGGTAGCATGAT
GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC	CAAAGCGCCAACTCTTAAGAACAAACTGTC
GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC

>NZ_CP012706|5|4|3758927-3760579|PILER-CR
GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC	GCTGATCATAATAAGCCTGTTGAAGAGTC
GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC	TGATTTGGCATCTGCTATTTGATCAATCA
GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC	GCAATTACCCCAATCCTTCATGCCCTGAGA
GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC	GAAATAATTAGTAGAAGAGAATATACCACT
GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC	GTGTTCAGATATTCAAGGCAAGTGTCTGAA
GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC	GGTGTACTTGACAAAGGTAGGCAGGCAGG
GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC	TCAATATAGCGGCCAAATTGTCCCTTCGGT
GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC	GTTCCCTGTCTGCGAACATGAAACGCCGT
GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC	TTTGAGATTCAGAACTCGCCCATTCATTCT
GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC	GTTTGATGATAATAAAGGATATTCATCTA
GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC	TTTTGCAAAGCCTCAGCGGCACGGAGTTG
GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC	TCTGGATTCGTCTCTCCATAACCAAGATA
GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC	TTCCATATCTTATTATTCCACGACTCGCGA
GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC	GTACTAACAGATTCTTCCACGGCTTTGATA
GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC	GAAAAAGCTAATTGGCTTATCAAAAAATA
GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC	AGTATCAGCCTGAGTATTACCAAGAGCAG
GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC	AAGCCTCAAAAAAGACAGGTTCTTGTGTA
GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC	TTTCTGCTGCTGATTGGATGCCTATTACTA
GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC	TAGAACCGTCACGAATCAAATTCCAATATT
GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC	CACATAATCCAACAAAGGGGTAGCATGAT
GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC	CAAAGCGCCAACTCTTAAGAACAAACTGTC
GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP012706.1\|WP_008770318.1\|3751265_3751709_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP012706.1\|WP_032567169.1\|3757574_3757802_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP012706.1\|WP_005791608.1\|3770614_3771988_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|238863
NZ_CP012706.1\|WP_010993659.1\|3760687_3761020_-\|CRISPR-associated-endonuclease-Cas2	cas2	COG3512_cas2_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|226043
NZ_CP012706.1\|WP_005791999.1\|3747222_3748170_-\|phosphate-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|378974
NZ_CP012706.1\|WP_005791628.1\|3761023_3761956_-\|type-II-CRISPR-associated-endonuclease-Cas1	cas1	cd09720_cas1_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|274694
NZ_CP012706.1\|WP_005791612.1\|3768257_3769745_-\|MBOAT-family-protein	unknown	unknown	gnl\|CDD\|224610
NZ_CP012706.1\|WP_005792004.1\|3749680_3750286_-\|biopolymer-transporter-ExbD	unknown	unknown	gnl\|CDD\|376792
NZ_CP012706.1\|WP_009293010.1\|3762990_3767301_-\|type-II-CRISPR-RNA-guided-endonuclease-Cas9	cas9	cd09643_cas9_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|375967
NZ_CP012706.1\|WP_077687810.1\|3767378_3767759_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|376574
NZ_CP012706.1\|WP_010993657.1\|3745769_3747203_-\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|274350
NZ_CP012706.1\|WP_005791614.1\|3767923_3768184_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP012706.1\|WP_005792001.1\|3748172_3748988_-\|energy-transducer-TonB	unknown	unknown	gnl\|CDD\|367555
NZ_CP012706.1\|WP_005792006.1\|3750313_3751126_-\|MotA/TolQ/ExbB-proton-channel-family-protein	unknown	unknown	gnl\|CDD\|376576
NZ_CP012706.1\|WP_005792003.1\|3749017_3749668_-\|biopolymer-transporter-ExbD	unknown	unknown	gnl\|CDD\|376792
NZ_CP012706.1\|WP_010993660.1\|3767699_3767912_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP012706.1\|WP_005791995.1\|3744603_3745464_-\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|213197
NZ_CP012706.1\|WP_005791607.1\|3772104_3772398_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP012706.1\|WP_005791993.1\|3743791_3744607_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP012706.1\|WP_077687812.1\|3769731_3770661_-\|lipase	unknown	unknown	gnl\|CDD\|238863

Protein	Function_ID	Function_description	E-value
NZ_CP012706.1\|WP_077687810.1\|3767378_3767759_-\|hypothetical-protein	gnl\|CDD\|376574	pfam01610, DDE_Tnp_ISL3, Transposase. Transposase proteins are necessary for efficient DNA transposition. Contains transposases for IS204, IS1001, IS1096 and IS1165.	2.67899e-08
NZ_CP012706.1\|WP_005791608.1\|3770614_3771988_-\|hypothetical-protein	gnl\|CDD\|238863	cd01825, SGNH_hydrolase_peri1, SGNH_peri1; putative periplasmic member of the SGNH-family of hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.	2.84115e-62
NZ_CP012706.1\|WP_010993659.1\|3760687_3761020_-\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|226043	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms].	1.3546e-26
NZ_CP012706.1\|WP_005791999.1\|3747222_3748170_-\|phosphate-ABC-transporter-substrate-binding-protein	gnl\|CDD\|378974	pfam12849, PBP_like_2, PBP superfamily domain. This domain belongs to the periplasmic binding protein superfamily.	6.26613e-37
NZ_CP012706.1\|WP_005791628.1\|3761023_3761956_-\|type-II-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274694	TIGR03639, cas1_NMENI, CRISPR-associated endonuclease Cas1, subtype II/NMENI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is a prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 variant of the NMENI subtype of CRISPR/Cas system.	1.84378e-135
NZ_CP012706.1\|WP_005791612.1\|3768257_3769745_-\|MBOAT-family-protein	gnl\|CDD\|224610	COG1696, DltB, Predicted membrane protein involved in D-alanine export [Cell envelope biogenesis, outer membrane].	4.72083e-86
NZ_CP012706.1\|WP_005792004.1\|3749680_3750286_-\|biopolymer-transporter-ExbD	gnl\|CDD\|376792	pfam02472, ExbD, Biopolymer transport protein ExbD/TolR. This group of proteins are membrane bound transport proteins essential for ferric ion uptake in bacteria. The Pfam family consists of ExbD, and TolR which are involved in TonB-dependent transport of various receptor bound substrates including colicins.	1.15551e-12
NZ_CP012706.1\|WP_009293010.1\|3762990_3767301_-\|type-II-CRISPR-RNA-guided-endonuclease-Cas9	gnl\|CDD\|375967	pfam18541, RuvC_III, RuvC endonuclease subdomain 3. Cas9 proteins are abundant across the bacterial kingdom, but vary widely in both sequence and size. All known Cas9 enzymes contain an HNH domain that cleaves the DNA strand complementary to the guide RNA sequence (target strand), and a RuvC nuclease domain required for cleaving the noncomplementary strand (non-target strand), yielding double-strand DNA breaks (DSBs). The crystal structures of type II-A and II-C Cas9 proteins highlight the features in Cas9 enzymes that support their function as RNA-guided endonucleases. Cas9 enzymes adopt a bilobed architecture composed of a nuclease lobe containing juxtaposed RuvC and HNH nuclease domains and a variable alpha-helical lobe likely to be involved in nucleic acid binding. The RuvC domain forms the structural core of the nuclease lobe, a six-stranded beta sheet surrounded by four alpha helices, with all three conserved subdomains (I, II, III) contributing catalytic residues to the active site.	4.40484e-47
NZ_CP012706.1\|WP_010993657.1\|3745769_3747203_-\|tetratricopeptide-repeat-protein	gnl\|CDD\|274350	TIGR02917, TPR_domain_protein, putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.	1.11106e-06
NZ_CP012706.1\|WP_005792001.1\|3748172_3748988_-\|energy-transducer-TonB	gnl\|CDD\|367555	pfam03544, TonB_C, Gram-negative bacterial TonB protein C-terminal. The TonB_C domain is the well-characterized C-terminal region of the TonB receptor molecule. This protein is bound to an inner membrane-bound protein ExbB via a globular domain and has a flexible middle region that is likely to help in positioning the C-terminal domain into the iron-transporter barrel in the outer membrane. TonB_C interacts with the N-terminal TonB box of the outer membrane transporter that binds the Fe3+-siderophore complex. The barrel of the transporter, consisting of 22 beta-sheets and an inside plug, binds the iron complex in the barrel entrance.	9.40269e-21
NZ_CP012706.1\|WP_005792006.1\|3750313_3751126_-\|MotA/TolQ/ExbB-proton-channel-family-protein	gnl\|CDD\|376576	pfam01618, MotA_ExbB, MotA/TolQ/ExbB proton channel family. This family groups together integral membrane proteins that appear to be involved translocation of proteins across a membrane. These proteins are probably proton channels. MotA is an essential component of the flageller motor that uses a proton gradient to generate rotational motion in the flageller. ExbB is part of the TonB-dependent transduction complex. The TonB complex uses the proton gradient across the inner bacterial membrane to transport large molecules across the outer bacterial membrane.	1.71919e-31
NZ_CP012706.1\|WP_005792003.1\|3749017_3749668_-\|biopolymer-transporter-ExbD	gnl\|CDD\|376792	pfam02472, ExbD, Biopolymer transport protein ExbD/TolR. This group of proteins are membrane bound transport proteins essential for ferric ion uptake in bacteria. The Pfam family consists of ExbD, and TolR which are involved in TonB-dependent transport of various receptor bound substrates including colicins.	1.68278e-20
NZ_CP012706.1\|WP_005791995.1\|3744603_3745464_-\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|213197	cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A. This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.	1.74028e-49
NZ_CP012706.1\|WP_077687812.1\|3769731_3770661_-\|lipase	gnl\|CDD\|238863	cd01825, SGNH_hydrolase_peri1, SGNH_peri1; putative periplasmic member of the SGNH-family of hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.	4.36549e-67

>NZ_CP012706.1|WP_032567169.1|3757574_3757802_-|hypothetical-protein
MPYFCIRFPRDGQHLILTCCNGVGPALQNNKNNFLFIWIIIIKVVIFAVRFAERGSLSDTSFPFAQRGLEIKDGH
>NZ_CP012706.1|WP_008770318.1|3751265_3751709_-|hypothetical-protein
MRTSVKFILMFVLLMLSFSISGNALNITECSHKSVNSCQVSASSLDTNYSYRYGSDITGFDKSQTLSVSDVELGFKPVSETYSSNNLRLRRILEDSDLFKDTMRKWCLVRENLLVLDQSKSYYSDKDPHYASISCHYYIFALRRILI
>NZ_CP012706.1|WP_005792006.1|3750313_3751126_-|MotA/TolQ/ExbB-proton-channel-family-protein
METTQKKSTKIVGIKNAGLVIICCFIIAVCIYHFILGNPTNFMNNDPNNHPLPGNFMGTIYKGGVIVPVIQTLLLTVLALSIERYFALRSAFGRGSLVKFVSNIKEALSVGDLRKAQEICDKQRGSVANVVTSTLRKYEEMENESSLSKDQKLLAIQKELEEATALELPMMEQNLPIIGTITTLGTLMGLLGTVIGMIRSFAALAAGGSADSMALSQGISEALINTAFGILTGALAVISYNYYTNKIDKLTYSLDEVGFSIVQTFAATHK
>NZ_CP012706.1|WP_005792004.1|3749680_3750286_-|biopolymer-transporter-ExbD
MGRAKIKKKSTFIDMTAMSDVTVLLLTFFMLTSTFVKKEPVQVTTPASVSEIKIPEKNILQILVDPNGKIFMSMDKQSDLKAVLESMGQEYGVTFTPEQEKKFMLASTFGVPMKNMKTYLDLPTDKQDAVLKNEGIPCDSLDNQFKSWVRNARAVNSDLRIAIKADADTPYSVIKNVMNSLQDLRENRYNLITSLKTTSEN
>NZ_CP012706.1|WP_005792003.1|3749017_3749668_-|biopolymer-transporter-ExbD
MSAEVQESGKKKGNSKQKKMTVRVDFTPMVDMNMLLITFFMLCTSLSKPQTMEISMPSNDKNITEEQQSKVKASQAITLLLGPDDKLYYYEGEPNYKDYTSLKETTYKPDGLRGILLKKNATAVRQVNDLKQKKLELKISEDEFTKQLSEIKSGKNTPTVIIKAMDNASYKNLIDALDEMQICNIGKYVITNIAEADEFLVKNFESKGELSQNIAD
>NZ_CP012706.1|WP_005792001.1|3748172_3748988_-|energy-transducer-TonB
MAKIDLTSFEWCELIFKGKNKAYGAYKMRADSPKRHNVAMVIVLIIALVGFSLPTLIKMATPKQKEVMTEVTTLSQLEEPEVKQEEMKRVEPVAPPPPALKSSIKFTAPVIKKDEEVHEDDEIKSQEELTQTKVAISIADVKGNDEANGKDIADLKQVVTQAEPAEEQVFDMVEQMPTFPGGTTELMKYIGEHLKYPPIAAENGTQGKVICRFVIGKDGQVRDVTIARSLDPYCDKEAIRVIKSMPKWIPGKQNGKAVAVNFTVPIVFKLQ
>NZ_CP012706.1|WP_005791999.1|3747222_3748170_-|phosphate-ABC-transporter-substrate-binding-protein
MTKKQFWLIGAWSLIALSACSSKPKDGLTDTYTSGVIAITADESFQPIVQEEIDVFEGLFPLAGIVPRYTTEVDAINQLLKDSVRLAITTRTLTPEEMNSFHSRKFFPREIKLATDGLALIVNRQNADSLISVRDIRRILTGQVQKWKELYPASGLGDIQLVFDNKNSSTVRFAVDSICKGAPLSDKDVKALKTNQQVIDYVAHTPDAIGVIGVNWLGNRSDTTNLSFRDEIRVMSVSADDVATVENSYKPYQAYLYYGNYPLARPIYVLLNDPRNALPWGFASFLTSDRGQRIILKSGLVPATQPVRIVDVKDE
>NZ_CP012706.1|WP_010993657.1|3745769_3747203_-|tetratricopeptide-repeat-protein
MKRFQLFLVGAFVAAGPLFAQSADADWHSEVAKVKELIQANPAQASEEAAQLLKGKNKKNTDLLIAIGQAYLEAGKVNEAEAYAALGQKANSKSAAVSVLQGDIAVAKKDAGKACQLYEQAIYFDPNYKEAYLKFADVYKGASPQLAIEKLEQLKNLDPSCVAADKKLAEVYYLNNKFDKAAEAYAHFINTPEATEDDLTKYSFALFLNHDFEKSLQIALMGLQKNPRDAAFNRLAMYNYTDLKRYDEAMKAADAFFKESDKADFSYLDYMYFGHLLNAVKKYDQAVEAYMKAITLDPAKTDLWREVSSSYELNNEFAKAIEAYKKYSESLSADKRTPDVQFQIGKLYYEKGTQSDTLTVSLDERKAALVSADSIFTEIAKVAPDSYLGNFWRARTNSALDPETTQGLAKPYYEEVAAFLIDKNDPRYNSALIECYSYLGYYYLVANKLPESKEYWNKILAIDPANATAKRALDGIK
>NZ_CP012706.1|WP_005791995.1|3744603_3745464_-|ATP-binding-cassette-domain-containing-protein
MKMITVENLSFLYRKSKRAVLHDFSLSLEKGRVYGLLGKNGAGKSTLLYLMSGLLTPKSGKVVYHDVDVRRRLPITLQDMFLVPEEFDLPPVSLISYIELNSPFYPRFSKEDMVKYLHYFEMDINIDLGALSMGQKKKVFMSFALATNTSLLLMDEPTNGLDIPGKSQFRKFIASGMTDDKTILISTHQVRDIDKVLDHVLIMDNSRVLLNESTMSICDKLFFTESENRELLQSSLFSTPSIQGNFLLLPNESGEDSEINLELLFNATLAVPERISALFHSKQIEL
>NZ_CP012706.1|WP_005791993.1|3743791_3744607_-|hypothetical-protein
MIRDTFFSQTRFVNLCRKEMVENWKSNLLRVALMYGAMAVIMLWSGYLSYRAVGQDTDSTWEFNLVIFMWGLCVFGCLSASFTMERMKSKTGRLSVLMTPATSFEKYFSRWLVFTVVFLIVFLITYKLADYTKVLVYSLVYPENNAIAITPLSHLFGENTDYYTVFKHTHTFVLMIASYFFCQSCFVLGSSVWPKNSFIKTFSAGMIIFIAYVLIVVGFAKLIWPDQISYNPDMSEETAFACLSAIAVLFTLTNWTLAYFRFKESEIINRM
>NZ_CP012706.1|WP_010993659.1|3760687_3761020_-|CRISPR-associated-endonuclease-Cas2
MDRFNEYRIMWVLVLFDLPTETKKEKKAYADFRKNLQKDGFTMFQFSIYVRHCGSSENAAVHIKRVKSFLPEFGHVGIMCITDKQFGDIELFYGKKVQDVNTPGQQLELF
>NZ_CP012706.1|WP_005791628.1|3761023_3761956_-|type-II-CRISPR-associated-endonuclease-Cas1
MIKKTLYFGNPVYLSLRNAQLVIKLPDVEKATVLPETLKKQAEVTKPIEDIGIVVLDNKQITITSGVLEALLENNCSVITCDSRSMPVGLMLPLYGNTTQNERFRKQLDTSLPLKKQLWQQTIQAKINNQASVLKDCMDEEVKCMRIWATNVRSGDPDNLEARAAAYYWKSLFSDVDSFTREREGIPPNNLLNYGYAILRAVVARGLVISGLLPTLGIHHHNRYNAYCLADDIMEPYRPYVDELVFSLIQEYGKNAELTKEMKTRLLTVPTLEVIIGGKRSPLMVAVGQTTASLYKCFNGELRRISYPER
>NZ_CP012706.1|WP_009293010.1|3762990_3767301_-|type-II-CRISPR-RNA-guided-endonuclease-Cas9
MKRILGLDLGTNSIGWALVNEAENKDERSSIVKLGVRVNPLTVDELTNFEKGKSITTNADRTLKRGMRRNLQRYKLRRETLTEVLKEHKLITEDTILSENGNRTTFETYRLRAKAVTEEISLEEFARVLLMINKKRGYKSSRKAKGVEEGTLIDGMDIARELYNNNLTPGELCLQLLDAGKKFLPDFYRSDLQNELDRIWEKQKEYYPEILTDVLKEELRGKKRDAVWAICAKYFVWKENYTEWNKEKGKTEQQEREHKLEGIYSKRKRDEAKRENLQWRVNGLKEKLSLEQLVIVFQEMNTQINNSSGYLGAISDRSKELYFNKQTVGQYQMEMLDKNPNASLRNMVFYRQDYLDEFNMLWEKQAVYHKELTEELKKEIRDIIIFYQRRLKSQKGLIGFCEFESRQIEVDIDGKKKIKTVGNRVISRSSPLFQEFKIWQILNNIEVTVVGKKRKRRKLKENYSALFEELNDAEQLELNGSRRLCQEEKELLAQELFIRDKMTKSEVLKLLFDNPQELDLNFKTIDGNKTGYALFQAYSKMIEMSGHEPVDFKKPVEKVVEYIKAVFDLLNWNTDILGFNSNEELDNQPYYKLWHLLYSFEGDNTPTGNGRLIQKMTELYGFEKEYATILANVSFQDDYGSLSAKAIHKILPHLKEGNRYDVACVYAGYRHSESSLTREEIANKVLKDRLMLLPKNSLHNPVVEKILNQMVNVINVIIDIYGKPDEIRVELARELKKNAKEREELTKSIAQTTKAHEEYKTLLQTEFGLTNVSRTDILRYKLYKELESCGYKTLYSNTYISREKLFSKEFDIEHIIPQARLFDDSFSNKTLEARSVNIEKGNKTAYDFVKEKFGESGADNSLEHYLNNIEDLFKSGKISKTKYNKLKMAEQDIPDGFIERDLRNTQYIAKKALSMLNEISHRVVATSGSVTDKLREDWQLIDVMKELNWEKYKALGLVEYFEDRDGRQIGRIKDWTKRNDHRHHAMDALTVAFTKDVFIQYFNNKNASLDPNANEHAIKNKYFQNGRAIAPMPLREFRAEAKKHLENTLISIKAKNKVITGNINKTRKKGGVNKNMQQTPRGQLHLETIYGSGKQYLTKEEKVNASFDMRKIGTVSKSAYRDALLKRLYENDNDPKKAFAGKNSLDKQPIWLDKEQMRKVPEKVKIVTLEAIYTIRKEISPDLKVDKVIDVGVRKILIDRLNEYGNDAKKAFSNLDKNPIWLNKEKGISIKRVTISGISNAQSLHVKKDKDGKPILDENGRNIPVDFVNTGNNHHVAVYYRPVIDKRGQLVVDEAGNPKYELEEVVVSFFEAVTRANLGLPIIDKDYKTTEGWQFLFSMKQNEYFVFPNEKTGFNPKEIDLLDVENYGLISPNLFRVQKFSLKNYVFRHHLETTIKDTSSILRGITWIDFRSSKGLDTIVKVRVNHIGQIVSVGEY
>NZ_CP012706.1|WP_077687810.1|3767378_3767759_-|hypothetical-protein
MDKVALSRGELSILSNKASHGGKGSIVAIIRGMDIYMVSSVLFRLSRRRYQVRDIKLDMTPNMEQIVRSCFPTAKRVIDRFHKKLAYEAVLETLVAQKRTRQMPHPKCFHNGIVLIVICFKLVTQR
>NZ_CP012706.1|WP_010993660.1|3767699_3767912_+|hypothetical-protein
MGSLVAEYGEFTARKGNFINTDVSTDILFKKQLILCMGKLIPVKITTNDCGITASEEHRQRYTKSSITYN
>NZ_CP012706.1|WP_005791614.1|3767923_3768184_-|hypothetical-protein
MLLFILNRRMLFLSNILDGKPATRDSMILSLFKISLFAVKKTLNIRCRHRILKQSNQYINRNWRMVAEGIRMAQYLFCVFFIKELY
>NZ_CP012706.1|WP_005791612.1|3768257_3769745_-|MBOAT-family-protein
MFPIDIDFSRLLEAFKYNPDAPMIFSSGIFLWLFAAFMVIYTLLQHRNTARILFVALFSYYFYYKSSGTYFFLLAIVTVTDFVIAWLMDRTDVRWKRKFCVVLSVSVNLGLLCYFKYTNFLGGVIASLMGGEFTALDIFLPVGISFFTFQSLSYTIDVYRKEIKPLTSLLDYAFYVSFFPQLVAGPIVRARDFIPQIRKPLYVSQEMFGRGIFLIVAGLFKKAVISDYISINFVERIFDNPTLYSGVENLMGLYGYALQIYCDFSGYSDMAIGIALLLGFHFNLNFNSPYKSASITEFWRRWHISLSSWLRDYLYISLGGNRHGKFRQYLNLIITMFLGGLWHGASWNFVLWGTFHGVALALHKAWMSIIGRKKGETSHGIRRVLGVIITFHFVCFCWIFFRNADFHNSMDMLNQIFTAFRPQLFPQLIEGYWRVFALMAVGFLLHFAPDSWENAVCRGVIKLPFLGKAIVMVAMIYLVIQMKSSEIQPFIYFQF
>NZ_CP012706.1|WP_077687812.1|3769731_3770661_-|lipase
MEKNSMKGERPMRLNRWLGVLILLLSGVWSVRAQDLLPACPQVDKGTKACKPMREPGSLGDTVSVKIVFPVAFKGVGRNEVVDSLGILAPVLEHLRLVQNGSSEDTVRIVHIGDSHIRGHIFPRTTGARLTETFGAISYTDMGVNGATCLTFTHPDRIAAIAALKPELLILSFGTNESHNRKYNSNVHYRQMEELLELLHDSLPDVPILMTTPPGSYESFRQRRRRRTYAINPRTVTAVNTIHDFARRHKLVVWDMYNVVGGSLRACKNWSDAQLMRPDHVHYLPEGYTLQGELLYEAIIKAYNEYVSH
>NZ_CP012706.1|WP_005791608.1|3770614_3771988_-|hypothetical-protein
MKNYLKYSLWLTLIVLFALIGMHWLPAITIDGHTMRRVDLLSDVRMPEPDKDEVVADSLPPVPVVKPAFVDTCRSGMTCIEDYSDSTMRGMTPFYRALDEIQSKGRLVRIAVFGDSFIEADIFTADLREMLQKRFGGCGVGFVTITSMTSGYRPTVRHSFGGWSSHAVTDSVYFDKKKQGISGHYFVPRERAYVELRGQNKYASLLDTCQIASIFFYNKGEVNLSVCVNRGEAEARDFSTTGRLQQMKVNGRIGSVRWDINRADSTLFYGVAMDGTQGVVVDNFSLRGSSGLSLRSIPSKMLQEFNAQRPYDLIILEYGLNVATERGRNYDPYKKGLLTAINHLKECFPQAGFLLLSVGDRDYKTDTGELRTMPGVKNLIRYQQNIAAESGIAFWNMFEAMGGEGSMAELVHAKPSLANYDYTHINFRGGRHLAGLLYETLIYGKEQYERRKAYEAE
>NZ_CP012706.1|WP_005791607.1|3772104_3772398_-|hypothetical-protein
MKSVLITFDQAYYERIIALLDRLGCRGFTYLERVQGRGSKTGDPHFGSHAWPSMCSAIITVVDDKKVDPLLDALHRMDMQTEQLGLRAFVTNVERSI

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Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP012706_5	5.2\|3758820\|30\|NZ_CP012706\|CRISPRCasFinder	3758820-3758849	30	FJ008913	Bacteroides phage B40-8 culture-collection ATCC:51477-B1, complete genome	39038-39067	0	1.0
NZ_CP012706_5	5.2\|3758820\|30\|NZ_CP012706\|CRISPRCasFinder	3758820-3758849	30	NC_011222	Bacteroides phage B40-8, complete genome	39038-39067	0	1.0
NZ_CP012706_5	5.2\|3758820\|30\|NZ_CP012706\|CRISPRCasFinder	3758820-3758849	30	MT630433	Bacteroides phage vB_BfrS_23, complete genome	33693-33722	0	1.0
NZ_CP012706_3	3.6\|2133658\|37\|NZ_CP012706\|CRISPRCasFinder,CRT,PILER-CR	2133658-2133694	37	NZ_CP043609	Bacteroides fragilis strain GUT04 plasmid unnamed1, complete sequence	75133-75169	1	0.973
NZ_CP012706_3	3.6\|2133658\|37\|NZ_CP012706\|CRISPRCasFinder,CRT,PILER-CR	2133658-2133694	37	NZ_CP036540	Bacteroides fragilis strain DCMOUH0017B plasmid pBFO17_1, complete sequence	32928-32964	1	0.973
NZ_CP012706_3	3.6\|2133658\|37\|NZ_CP012706\|CRISPRCasFinder,CRT,PILER-CR	2133658-2133694	37	NZ_CP036547	Bacteroides fragilis strain DCMSKEJBY0001B plasmid pBFS01_1, complete sequence	49999-50035	1	0.973
NZ_CP012706_5	5.2\|3758820\|30\|NZ_CP012706\|CRISPRCasFinder	3758820-3758849	30	MN078104	Bacteroides phage Barc2635, complete genome	34678-34707	1	0.967
NZ_CP012706_5	5.2\|3758820\|30\|NZ_CP012706\|CRISPRCasFinder	3758820-3758849	30	NC_016770	Bacteroides phage B124-14, complete genome	30451-30480	1	0.967
NZ_CP012706_5	5.2\|3758820\|30\|NZ_CP012706\|CRISPRCasFinder	3758820-3758849	30	HE608841	Bacteroides phage B124-14 complete genome	30451-30480	1	0.967
NZ_CP012706_5	5.18\|3760045\|29\|NZ_CP012706\|CRISPRCasFinder,PILER-CR	3760045-3760073	29	NC_016770	Bacteroides phage B124-14, complete genome	25267-25295	1	0.966
NZ_CP012706_5	5.18\|3760045\|29\|NZ_CP012706\|CRISPRCasFinder,PILER-CR	3760045-3760073	29	HE608841	Bacteroides phage B124-14 complete genome	25267-25295	1	0.966
NZ_CP012706_5	5.18\|3760045\|29\|NZ_CP012706\|CRISPRCasFinder,PILER-CR	3760045-3760073	29	MT630433	Bacteroides phage vB_BfrS_23, complete genome	28508-28536	1	0.966
NZ_CP012706_5	5.18\|3760045\|29\|NZ_CP012706\|CRISPRCasFinder,PILER-CR	3760045-3760073	29	MN078104	Bacteroides phage Barc2635, complete genome	39864-39892	1	0.966
NZ_CP012706_5	5.18\|3760045\|29\|NZ_CP012706\|CRISPRCasFinder,PILER-CR	3760045-3760073	29	FJ008913	Bacteroides phage B40-8 culture-collection ATCC:51477-B1, complete genome	44223-44251	1	0.966
NZ_CP012706_5	5.18\|3760045\|29\|NZ_CP012706\|CRISPRCasFinder,PILER-CR	3760045-3760073	29	NC_011222	Bacteroides phage B40-8, complete genome	44223-44251	1	0.966
NZ_CP012706_5	5.9\|3759357\|29\|NZ_CP012706\|CRISPRCasFinder,PILER-CR	3759357-3759385	29	FJ008913	Bacteroides phage B40-8 culture-collection ATCC:51477-B1, complete genome	40935-40963	2	0.931
NZ_CP012706_5	5.9\|3759357\|29\|NZ_CP012706\|CRISPRCasFinder,PILER-CR	3759357-3759385	29	NC_011222	Bacteroides phage B40-8, complete genome	40935-40963	2	0.931
NZ_CP012706_5	5.13\|3759663\|29\|NZ_CP012706\|CRISPRCasFinder,PILER-CR	3759663-3759691	29	NC_019401	Cronobacter phage vB_CsaM_GAP32, complete genome	111156-111184	5	0.828
NZ_CP012706_5	5.16\|3759891\|30\|NZ_CP012706\|CRISPRCasFinder,PILER-CR	3759891-3759920	30	MH617627	Microviridae sp. isolate ctci6, complete genome	5970-5999	5	0.833
NZ_CP012706_4	4.1\|2381945\|30\|NZ_CP012706\|CRISPRCasFinder	2381945-2381974	30	NC_015512	Haliscomenobacter hydrossis DSM 1100 plasmid pHALHY02, complete sequence	54056-54085	6	0.8
NZ_CP012706_5	5.1\|3758743\|30\|NZ_CP012706\|CRISPRCasFinder	3758743-3758772	30	MN694251	Marine virus AFVG_250M445, complete genome	2134-2163	6	0.8
NZ_CP012706_5	5.2\|3758820\|30\|NZ_CP012706\|CRISPRCasFinder	3758820-3758849	30	NZ_KM583817	Helicobacter pylori strain UM157 plasmid pUM157, complete sequence	6906-6935	6	0.8
NZ_CP012706_5	5.4\|3758974\|29\|NZ_CP012706\|CRISPRCasFinder,PILER-CR	3758974-3759002	29	NZ_CP013139	Pseudoalteromonas sp. Bsw20308 plasmid pPBSW1, complete sequence	172045-172073	6	0.793
NZ_CP012706_5	5.5\|3759050\|29\|NZ_CP012706\|CRISPRCasFinder,PILER-CR	3759050-3759078	29	CP011075	Brevibacillus laterosporus strain B9 plasmid unnamed1, complete sequence	516998-517026	6	0.793
NZ_CP012706_5	5.7\|3759203\|30\|NZ_CP012706\|CRISPRCasFinder,PILER-CR	3759203-3759232	30	KC821624	Cellulophaga phage phi14:2, complete genome	73836-73865	6	0.8
NZ_CP012706_5	5.7\|3759203\|30\|NZ_CP012706\|CRISPRCasFinder,PILER-CR	3759203-3759232	30	MT446416	UNVERIFIED: Escherichia virus TH47, complete genome	327630-327659	6	0.8
NZ_CP012706_5	5.17\|3759968\|30\|NZ_CP012706\|CRISPRCasFinder,PILER-CR	3759968-3759997	30	KX911187	Rathayibacter phage NCPPB3778, complete genome	27092-27121	6	0.8
NZ_CP012706_5	5.18\|3760045\|29\|NZ_CP012706\|CRISPRCasFinder,PILER-CR	3760045-3760073	29	NZ_CP017244	Rhizobium etli 8C-3 plasmid pRsp8C3c, complete sequence	466834-466862	6	0.793
NZ_CP012706_2	2.8\|1985507\|34\|NZ_CP012706\|PILER-CR,CRISPRCasFinder,CRT	1985507-1985540	34	KP790010	Gordonia phage GordDuk1, complete genome	1584-1617	7	0.794
NZ_CP012706_2	2.8\|1985507\|34\|NZ_CP012706\|PILER-CR,CRISPRCasFinder,CRT	1985507-1985540	34	KP790008	Gordonia phage GordTnk2, complete genome	1584-1617	7	0.794
NZ_CP012706_5	5.4\|3758974\|29\|NZ_CP012706\|CRISPRCasFinder,PILER-CR	3758974-3759002	29	NZ_CP018030	Alteromonas mediterranea strain RG65 plasmid MRG65-300, complete sequence	249438-249466	7	0.759
NZ_CP012706_5	5.13\|3759663\|29\|NZ_CP012706\|CRISPRCasFinder,PILER-CR	3759663-3759691	29	NC_021183	Clostridium pasteurianum BC1 plasmid pCLOPA01, complete sequence	15328-15356	7	0.759
NZ_CP012706_5	5.21\|3760273\|30\|NZ_CP012706\|CRISPRCasFinder,PILER-CR	3760273-3760302	30	NZ_CP050089	Rhizobium leguminosarum bv. trifolii strain 23B plasmid pRL23b2, complete sequence	47758-47787	7	0.767
NZ_CP012706_5	5.21\|3760273\|30\|NZ_CP012706\|CRISPRCasFinder,PILER-CR	3760273-3760302	30	MH552526	Siphoviridae sp. isolate ctfj46, complete genome	67787-67816	7	0.767
NZ_CP012706_2	2.8\|1985507\|34\|NZ_CP012706\|PILER-CR,CRISPRCasFinder,CRT	1985507-1985540	34	KP790009	Gordonia phage Gmala1, complete genome	1581-1614	8	0.765
NZ_CP012706_5	5.4\|3758974\|29\|NZ_CP012706\|CRISPRCasFinder,PILER-CR	3758974-3759002	29	LR745207	uncultured phage genome assembly, chromosome: 1	298727-298755	8	0.724
NZ_CP012706_5	5.7\|3759203\|30\|NZ_CP012706\|CRISPRCasFinder,PILER-CR	3759203-3759232	30	KP836356	Marinitoga camini virus 2, complete genome	34939-34968	8	0.733
NZ_CP012706_5	5.7\|3759203\|30\|NZ_CP012706\|CRISPRCasFinder,PILER-CR	3759203-3759232	30	KT997860	Uncultured Mediterranean phage uvDeep-CGR2-KM19-C269, complete genome	12890-12919	8	0.733
NZ_CP012706_5	5.11\|3759510\|29\|NZ_CP012706\|CRISPRCasFinder,PILER-CR	3759510-3759538	29	NZ_CP022416	Sulfitobacter pseudonitzschiae strain SMR1 plasmid pSMR1-1, complete sequence	133555-133583	8	0.724
NZ_CP012706_5	5.11\|3759510\|29\|NZ_CP012706\|CRISPRCasFinder,PILER-CR	3759510-3759538	29	NZ_CP021914	Sagittula sp. P11 plasmid unnamed1, complete sequence	272145-272173	8	0.724
NZ_CP012706_5	5.13\|3759663\|29\|NZ_CP012706\|CRISPRCasFinder,PILER-CR	3759663-3759691	29	NZ_KT901798	Clostridium botulinum strain GA0702E1CS plasmid pGA0702E1CS, complete sequence	35464-35492	8	0.724
NZ_CP012706_5	5.13\|3759663\|29\|NZ_CP012706\|CRISPRCasFinder,PILER-CR	3759663-3759691	29	NZ_KJ776578	Clostridium botulinum strain CDC3875 plasmid pCDC3875, complete sequence	35384-35412	8	0.724
NZ_CP012706_5	5.13\|3759663\|29\|NZ_CP012706\|CRISPRCasFinder,PILER-CR	3759663-3759691	29	NZ_KJ776581	Clostridium botulinum strain IFR_05/025 plasmid p05/025, complete sequence	37783-37811	8	0.724
NZ_CP012706_5	5.13\|3759663\|29\|NZ_CP012706\|CRISPRCasFinder,PILER-CR	3759663-3759691	29	NZ_KJ776580	Clostridium botulinum strain CDC5900 plasmid pCDC5900, complete sequence	40195-40223	8	0.724
NZ_CP012706_5	5.24\|3760503\|30\|NZ_CP012706\|CRISPRCasFinder,PILER-CR	3760503-3760532	30	AP013940	Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C5B-MedDCM-OCT-S25-C20, * SEQUENCING IN PROGRESS *	11838-11867	8	0.733
NZ_CP012706_5	5.24\|3760503\|30\|NZ_CP012706\|CRISPRCasFinder,PILER-CR	3760503-3760532	30	AP013941	Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C5B-MedDCM-OCT-S32-C20, * SEQUENCING IN PROGRESS *	11830-11859	8	0.733
NZ_CP012706_2	2.3\|1985160\|32\|NZ_CP012706\|PILER-CR,CRISPRCasFinder,CRT	1985160-1985191	32	NZ_CP045273	Bacillus megaterium strain FDU301 plasmid pFDU301A, complete sequence	811099-811130	9	0.719
NZ_CP012706_2	2.13\|1985854\|36\|NZ_CP012706\|PILER-CR,CRISPRCasFinder,CRT	1985854-1985889	36	HE806280	Acinetobacter bacteriophage AP22, complete genome	6707-6742	9	0.75
NZ_CP012706_5	5.7\|3759203\|30\|NZ_CP012706\|CRISPRCasFinder,PILER-CR	3759203-3759232	30	NC_047948	Staphylococcus phage phiSA_BS2, complete genome	86881-86910	9	0.7
NZ_CP012706_5	5.7\|3759203\|30\|NZ_CP012706\|CRISPRCasFinder,PILER-CR	3759203-3759232	30	MH078572	Staphylococcus phage phiSA_BS1, complete genome	41734-41763	9	0.7
NZ_CP012706_5	5.10\|3759433\|30\|NZ_CP012706\|CRISPRCasFinder,PILER-CR	3759433-3759462	30	NZ_CP021071	Mesorhizobium sp. WSM1497 plasmid pWSM1497, complete sequence	340689-340718	9	0.7
NZ_CP012706_1	1.1\|234179\|34\|NZ_CP012706\|PILER-CR	234179-234212	34	NC_023559	Oenococcus phage phi9805, complete genome	36716-36749	12	0.647

1. spacer 5.2|3758820|30|NZ_CP012706|CRISPRCasFinder matches to FJ008913 (Bacteroides phage B40-8 culture-collection ATCC:51477-B1, complete genome) position: , mismatch: 0, identity: 1.0

tttaaagaacgaaaaaaacgagtggatcac	CRISPR spacer
tttaaagaacgaaaaaaacgagtggatcac	Protospacer
******************************

2. spacer 5.2|3758820|30|NZ_CP012706|CRISPRCasFinder matches to NC_011222 (Bacteroides phage B40-8, complete genome) position: , mismatch: 0, identity: 1.0

tttaaagaacgaaaaaaacgagtggatcac	CRISPR spacer
tttaaagaacgaaaaaaacgagtggatcac	Protospacer
******************************

3. spacer 5.2|3758820|30|NZ_CP012706|CRISPRCasFinder matches to MT630433 (Bacteroides phage vB_BfrS_23, complete genome) position: , mismatch: 0, identity: 1.0

tttaaagaacgaaaaaaacgagtggatcac	CRISPR spacer
tttaaagaacgaaaaaaacgagtggatcac	Protospacer
******************************

4. spacer 3.6|2133658|37|NZ_CP012706|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP043609 (Bacteroides fragilis strain GUT04 plasmid unnamed1, complete sequence) position: , mismatch: 1, identity: 0.973

ctgatgaagcgattaagaagatcaatgtgatgattaa	CRISPR spacer
ctgatgaagcgattaagaaaatcaatgtgatgattaa	Protospacer
*******************.*****************

5. spacer 3.6|2133658|37|NZ_CP012706|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP036540 (Bacteroides fragilis strain DCMOUH0017B plasmid pBFO17_1, complete sequence) position: , mismatch: 1, identity: 0.973

ctgatgaagcgattaagaagatcaatgtgatgattaa	CRISPR spacer
ctgatgaagcgattaagaaaatcaatgtgatgattaa	Protospacer
*******************.*****************

6. spacer 3.6|2133658|37|NZ_CP012706|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP036547 (Bacteroides fragilis strain DCMSKEJBY0001B plasmid pBFS01_1, complete sequence) position: , mismatch: 1, identity: 0.973

ctgatgaagcgattaagaagatcaatgtgatgattaa	CRISPR spacer
ctgatgaagcgattaagaaaatcaatgtgatgattaa	Protospacer
*******************.*****************

7. spacer 5.2|3758820|30|NZ_CP012706|CRISPRCasFinder matches to MN078104 (Bacteroides phage Barc2635, complete genome) position: , mismatch: 1, identity: 0.967

tttaaagaacgaaaaaaacgagtggatcac	CRISPR spacer
tttaaagaacgaaaaaaacgagtggataac	Protospacer
*************************** **

8. spacer 5.2|3758820|30|NZ_CP012706|CRISPRCasFinder matches to NC_016770 (Bacteroides phage B124-14, complete genome) position: , mismatch: 1, identity: 0.967

tttaaagaacgaaaaaaacgagtggatcac	CRISPR spacer
tttaaagaacgaaaaaaacgagtggataac	Protospacer
*************************** **

9. spacer 5.2|3758820|30|NZ_CP012706|CRISPRCasFinder matches to HE608841 (Bacteroides phage B124-14 complete genome) position: , mismatch: 1, identity: 0.967

tttaaagaacgaaaaaaacgagtggatcac	CRISPR spacer
tttaaagaacgaaaaaaacgagtggataac	Protospacer
*************************** **

10. spacer 5.18|3760045|29|NZ_CP012706|CRISPRCasFinder,PILER-CR matches to NC_016770 (Bacteroides phage B124-14, complete genome) position: , mismatch: 1, identity: 0.966

gaaaaagctaattggcttatcaaaaaata	CRISPR spacer
gaaaaaactaattggcttatcaaaaaata	Protospacer
******.**********************

11. spacer 5.18|3760045|29|NZ_CP012706|CRISPRCasFinder,PILER-CR matches to HE608841 (Bacteroides phage B124-14 complete genome) position: , mismatch: 1, identity: 0.966

gaaaaagctaattggcttatcaaaaaata	CRISPR spacer
gaaaaaactaattggcttatcaaaaaata	Protospacer
******.**********************

12. spacer 5.18|3760045|29|NZ_CP012706|CRISPRCasFinder,PILER-CR matches to MT630433 (Bacteroides phage vB_BfrS_23, complete genome) position: , mismatch: 1, identity: 0.966

gaaaaagctaattggcttatcaaaaaata	CRISPR spacer
gaaaaaactaattggcttatcaaaaaata	Protospacer
******.**********************

13. spacer 5.18|3760045|29|NZ_CP012706|CRISPRCasFinder,PILER-CR matches to MN078104 (Bacteroides phage Barc2635, complete genome) position: , mismatch: 1, identity: 0.966

gaaaaagctaattggcttatcaaaaaata	CRISPR spacer
gaaaaaactaattggcttatcaaaaaata	Protospacer
******.**********************

14. spacer 5.18|3760045|29|NZ_CP012706|CRISPRCasFinder,PILER-CR matches to FJ008913 (Bacteroides phage B40-8 culture-collection ATCC:51477-B1, complete genome) position: , mismatch: 1, identity: 0.966

gaaaaagctaattggcttatcaaaaaata	CRISPR spacer
gaaaaaactaattggcttatcaaaaaata	Protospacer
******.**********************

15. spacer 5.18|3760045|29|NZ_CP012706|CRISPRCasFinder,PILER-CR matches to NC_011222 (Bacteroides phage B40-8, complete genome) position: , mismatch: 1, identity: 0.966

gaaaaagctaattggcttatcaaaaaata	CRISPR spacer
gaaaaaactaattggcttatcaaaaaata	Protospacer
******.**********************

16. spacer 5.9|3759357|29|NZ_CP012706|CRISPRCasFinder,PILER-CR matches to FJ008913 (Bacteroides phage B40-8 culture-collection ATCC:51477-B1, complete genome) position: , mismatch: 2, identity: 0.931

ggtgtacttgacaaaggtaggcaggcagg	CRISPR spacer
ggtgttcttgacaaaggtagacaggcagg	Protospacer
***** **************.********

17. spacer 5.9|3759357|29|NZ_CP012706|CRISPRCasFinder,PILER-CR matches to NC_011222 (Bacteroides phage B40-8, complete genome) position: , mismatch: 2, identity: 0.931

ggtgtacttgacaaaggtaggcaggcagg	CRISPR spacer
ggtgttcttgacaaaggtagacaggcagg	Protospacer
***** **************.********

18. spacer 5.13|3759663|29|NZ_CP012706|CRISPRCasFinder,PILER-CR matches to NC_019401 (Cronobacter phage vB_CsaM_GAP32, complete genome) position: , mismatch: 5, identity: 0.828

gtttgatgataataaaggatattcatcta-	CRISPR spacer
gttcgatgataatacaggatatt-attgat	Protospacer
***.********** ******** **. *

19. spacer 5.16|3759891|30|NZ_CP012706|CRISPRCasFinder,PILER-CR matches to MH617627 (Microviridae sp. isolate ctci6, complete genome) position: , mismatch: 5, identity: 0.833

ttccatatcttattattccacgactcgcga	CRISPR spacer
tatcatatcttactattccacgactcgcct	Protospacer
* .*********.***************

20. spacer 4.1|2381945|30|NZ_CP012706|CRISPRCasFinder matches to NC_015512 (Haliscomenobacter hydrossis DSM 1100 plasmid pHALHY02, complete sequence) position: , mismatch: 6, identity: 0.8

attcagttcaccacagattacacagattaa	CRISPR spacer
ttttttttcaccacagattccacagattca	Protospacer
 **.  ************* ******** *

21. spacer 5.1|3758743|30|NZ_CP012706|CRISPRCasFinder matches to MN694251 (Marine virus AFVG_250M445, complete genome) position: , mismatch: 6, identity: 0.8

gattcgaagatatgcaaatgtagcaagtat	CRISPR spacer
aattgacagataagcaaatggagcaagtat	Protospacer
.*** . ***** ******* *********

22. spacer 5.2|3758820|30|NZ_CP012706|CRISPRCasFinder matches to NZ_KM583817 (Helicobacter pylori strain UM157 plasmid pUM157, complete sequence) position: , mismatch: 6, identity: 0.8

tttaaagaacgaaaaaaacgagtggatcac	CRISPR spacer
tttagagaacgacaaaaacgagttattaac	Protospacer
****.******* ********** . * **

23. spacer 5.4|3758974|29|NZ_CP012706|CRISPRCasFinder,PILER-CR matches to NZ_CP013139 (Pseudoalteromonas sp. Bsw20308 plasmid pPBSW1, complete sequence) position: , mismatch: 6, identity: 0.793

gctgatcataataagcctgttgaagagtc	CRISPR spacer
cctgagcataataagcatgttgaatacta	Protospacer
 **** ********** ******* * *

24. spacer 5.5|3759050|29|NZ_CP012706|CRISPRCasFinder,PILER-CR matches to CP011075 (Brevibacillus laterosporus strain B9 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.793

tgatttggcatctgctatttgatcaatca	CRISPR spacer
taagctttcatcggctatttgatcaatca	Protospacer
*.* .*  **** ****************

25. spacer 5.7|3759203|30|NZ_CP012706|CRISPRCasFinder,PILER-CR matches to KC821624 (Cellulophaga phage phi14:2, complete genome) position: , mismatch: 6, identity: 0.8

gaaataattagtagaagagaatataccact	CRISPR spacer
agaagaattagtagaagagattataccttt	Protospacer
..** *************** ****** .*

26. spacer 5.7|3759203|30|NZ_CP012706|CRISPRCasFinder,PILER-CR matches to MT446416 (UNVERIFIED: Escherichia virus TH47, complete genome) position: , mismatch: 6, identity: 0.8

gaaataattagtagaagagaatataccact	CRISPR spacer
gataatattaatagaagagaatataccatg	Protospacer
** *  ****.*****************.

27. spacer 5.17|3759968|30|NZ_CP012706|CRISPRCasFinder,PILER-CR matches to KX911187 (Rathayibacter phage NCPPB3778, complete genome) position: , mismatch: 6, identity: 0.8

gtactaacagattcttccacggctttgata	CRISPR spacer
gtcatgacagattctgccatggctttgatt	Protospacer
**  *.********* ***.*********

28. spacer 5.18|3760045|29|NZ_CP012706|CRISPRCasFinder,PILER-CR matches to NZ_CP017244 (Rhizobium etli 8C-3 plasmid pRsp8C3c, complete sequence) position: , mismatch: 6, identity: 0.793

gaaaaagctaattggcttatcaaaaaata	CRISPR spacer
ggtcaagcggattggcttatcaaaaaaaa	Protospacer
*.  **** .***************** *

29. spacer 2.8|1985507|34|NZ_CP012706|PILER-CR,CRISPRCasFinder,CRT matches to KP790010 (Gordonia phage GordDuk1, complete genome) position: , mismatch: 7, identity: 0.794

gaaactgagctttcaaaagaggatgtcgggtttc---	CRISPR spacer
gaaactgagccctcaaaagaggattt---gtctctga	Protospacer
**********..************ *   **.**

30. spacer 2.8|1985507|34|NZ_CP012706|PILER-CR,CRISPRCasFinder,CRT matches to KP790008 (Gordonia phage GordTnk2, complete genome) position: , mismatch: 7, identity: 0.794

gaaactgagctttcaaaagaggatgtcgggtttc---	CRISPR spacer
gaaactgagccctcaaaagaggattt---gtctctga	Protospacer
**********..************ *   **.**

31. spacer 5.4|3758974|29|NZ_CP012706|CRISPRCasFinder,PILER-CR matches to NZ_CP018030 (Alteromonas mediterranea strain RG65 plasmid MRG65-300, complete sequence) position: , mismatch: 7, identity: 0.759

gctgatcataataagcctgttgaagagtc	CRISPR spacer
gctgatcataattagcttgttgatagatt	Protospacer
************ ***.****** ...*.

32. spacer 5.13|3759663|29|NZ_CP012706|CRISPRCasFinder,PILER-CR matches to NC_021183 (Clostridium pasteurianum BC1 plasmid pCLOPA01, complete sequence) position: , mismatch: 7, identity: 0.759

gtttgatgataataaaggatattcatcta	CRISPR spacer
atttgatgataaaaaaagatattctattc	Protospacer
.*********** ***.*******  .*

33. spacer 5.21|3760273|30|NZ_CP012706|CRISPRCasFinder,PILER-CR matches to NZ_CP050089 (Rhizobium leguminosarum bv. trifolii strain 23B plasmid pRL23b2, complete sequence) position: , mismatch: 7, identity: 0.767

tttctgctgctgattggatgcctattacta-	CRISPR spacer
cgtctgctgctcattgaatgccta-tgcgat	Protospacer
. ********* ****.******* *.* *

34. spacer 5.21|3760273|30|NZ_CP012706|CRISPRCasFinder,PILER-CR matches to MH552526 (Siphoviridae sp. isolate ctfj46, complete genome) position: , mismatch: 7, identity: 0.767

tttctgctgctgattggatgcctattacta	CRISPR spacer
taccttcttctgattggatgcctattcttt	Protospacer
* .** ** ***************** .*

35. spacer 2.8|1985507|34|NZ_CP012706|PILER-CR,CRISPRCasFinder,CRT matches to KP790009 (Gordonia phage Gmala1, complete genome) position: , mismatch: 8, identity: 0.765

gaaactgagctttcaaaagaggatgtcgggtttc---	CRISPR spacer
gaaactgagccctcaaaagaggattt---gtctatga	Protospacer
**********..************ *   **.*

36. spacer 5.4|3758974|29|NZ_CP012706|CRISPRCasFinder,PILER-CR matches to LR745207 (uncultured phage genome assembly, chromosome: 1) position: , mismatch: 8, identity: 0.724

gctgatcataataagcctgttgaagagtc	CRISPR spacer
gctgatcaaaataggcctgttgatatcct	Protospacer
******** ****.********* .  ..

37. spacer 5.7|3759203|30|NZ_CP012706|CRISPRCasFinder,PILER-CR matches to KP836356 (Marinitoga camini virus 2, complete genome) position: , mismatch: 8, identity: 0.733

gaaataattagtagaagagaatataccact	CRISPR spacer
tattcaagtagtagaagataatataccaaa	Protospacer
 *  .** ********** *********

38. spacer 5.7|3759203|30|NZ_CP012706|CRISPRCasFinder,PILER-CR matches to KT997860 (Uncultured Mediterranean phage uvDeep-CGR2-KM19-C269, complete genome) position: , mismatch: 8, identity: 0.733

gaaataattagtagaagagaatataccact	CRISPR spacer
tgtagcattagtagaagagaatcttccacc	Protospacer
 . *  **************** * ****.

39. spacer 5.11|3759510|29|NZ_CP012706|CRISPRCasFinder,PILER-CR matches to NZ_CP022416 (Sulfitobacter pseudonitzschiae strain SMR1 plasmid pSMR1-1, complete sequence) position: , mismatch: 8, identity: 0.724

gttccctgtctgcgaacatgaaacgccgt	CRISPR spacer
tgaccctgtcaccgaacatgaaacgcgcc	Protospacer
   *******  **************  .

40. spacer 5.11|3759510|29|NZ_CP012706|CRISPRCasFinder,PILER-CR matches to NZ_CP021914 (Sagittula sp. P11 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.724

gttccctgtctgcgaacatgaaacgccgt	CRISPR spacer
tgaccctgtctcagaacatgaaacgcgcc	Protospacer
   ********  *************  .

41. spacer 5.13|3759663|29|NZ_CP012706|CRISPRCasFinder,PILER-CR matches to NZ_KT901798 (Clostridium botulinum strain GA0702E1CS plasmid pGA0702E1CS, complete sequence) position: , mismatch: 8, identity: 0.724

gtttgatgataataaaggatattcatcta	CRISPR spacer
caatgatgataataatggataatcattgt	Protospacer
   ************ ***** ****.

42. spacer 5.13|3759663|29|NZ_CP012706|CRISPRCasFinder,PILER-CR matches to NZ_KJ776578 (Clostridium botulinum strain CDC3875 plasmid pCDC3875, complete sequence) position: , mismatch: 8, identity: 0.724

gtttgatgataataaaggatattcatcta	CRISPR spacer
taatgatgataataatggatagtcattat	Protospacer
   ************ ***** ****.

43. spacer 5.13|3759663|29|NZ_CP012706|CRISPRCasFinder,PILER-CR matches to NZ_KJ776581 (Clostridium botulinum strain IFR_05/025 plasmid p05/025, complete sequence) position: , mismatch: 8, identity: 0.724

gtttgatgataataaaggatattcatcta	CRISPR spacer
taatgatgataataatggatagtcattat	Protospacer
   ************ ***** ****.

44. spacer 5.13|3759663|29|NZ_CP012706|CRISPRCasFinder,PILER-CR matches to NZ_KJ776580 (Clostridium botulinum strain CDC5900 plasmid pCDC5900, complete sequence) position: , mismatch: 8, identity: 0.724

gtttgatgataataaaggatattcatcta	CRISPR spacer
taatgatgataataatggatagtcattat	Protospacer
   ************ ***** ****.

45. spacer 5.24|3760503|30|NZ_CP012706|CRISPRCasFinder,PILER-CR matches to AP013940 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C5B-MedDCM-OCT-S25-C20, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 8, identity: 0.733

caaagcgccaactcttaagaacaaactgtc	CRISPR spacer
gagcacgcgaacttttaagaacaaactgag	Protospacer
 *. .*** ****.**************

46. spacer 5.24|3760503|30|NZ_CP012706|CRISPRCasFinder,PILER-CR matches to AP013941 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C5B-MedDCM-OCT-S32-C20, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 8, identity: 0.733

caaagcgccaactcttaagaacaaactgtc	CRISPR spacer
gagcacgcgaacttttaagaacaaactgag	Protospacer
 *. .*** ****.**************

47. spacer 2.3|1985160|32|NZ_CP012706|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP045273 (Bacillus megaterium strain FDU301 plasmid pFDU301A, complete sequence) position: , mismatch: 9, identity: 0.719

gaaaatattgaagattctgaacgggagaaaaa	CRISPR spacer
gaaaatattgaagttcctgaacgtttccttaa	Protospacer
************* *.*******       **

48. spacer 2.13|1985854|36|NZ_CP012706|PILER-CR,CRISPRCasFinder,CRT matches to HE806280 (Acinetobacter bacteriophage AP22, complete genome) position: , mismatch: 9, identity: 0.75

gtagaactgttgttcttcttcattggcgatgtataa	CRISPR spacer
tcttatttgtttttcttcttcattggctatgtatca	Protospacer
 .  * .**** *************** ****** *

49. spacer 5.7|3759203|30|NZ_CP012706|CRISPRCasFinder,PILER-CR matches to NC_047948 (Staphylococcus phage phiSA_BS2, complete genome) position: , mismatch: 9, identity: 0.7

gaaataattagtagaagagaatataccact	CRISPR spacer
gaaacaattagaagaagagaataagattag	Protospacer
****.****** *********** . .

50. spacer 5.7|3759203|30|NZ_CP012706|CRISPRCasFinder,PILER-CR matches to MH078572 (Staphylococcus phage phiSA_BS1, complete genome) position: , mismatch: 9, identity: 0.7

gaaataattagtagaagagaatataccact	CRISPR spacer
gaaacaattagaagaagagaataagattag	Protospacer
****.****** *********** . .

51. spacer 5.10|3759433|30|NZ_CP012706|CRISPRCasFinder,PILER-CR matches to NZ_CP021071 (Mesorhizobium sp. WSM1497 plasmid pWSM1497, complete sequence) position: , mismatch: 9, identity: 0.7

tcaatatagcggccaaattgtcccttcggt	CRISPR spacer
cggggatagcggccgaactgtcccttcgcc	Protospacer
. .. *********.**.********** .

52. spacer 1.1|234179|34|NZ_CP012706|PILER-CR matches to NC_023559 (Oenococcus phage phi9805, complete genome) position: , mismatch: 12, identity: 0.647

aacaaaaatactaagtatttgtttgataagcaag	CRISPR spacer
tttaaaattattaagtatttgtttgatttctctc	Protospacer
  .**** **.****************   .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1296870 : 1355649

Bacteroides_phage(28.57%)

capsid,head,holin,integrase,tail

attL 1292910:1292925|attR 1361667:1361682

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1292910:1292925	attL	NA	NA	NA	NA
WP_008659541.1\|1296870_1298085_+\|integrase	site-specific integrase	NA	NA	NA	NA
WP_008768373.1\|1298707_1299274_+	DUF3575 domain-containing protein	NA	NA	NA	NA
WP_005786720.1\|1299287_1300400_+	DUF3868 domain-containing protein	NA	NA	NA	NA
WP_032595753.1\|1300404_1301541_+	clostripain	NA	NA	NA	NA
WP_065344389.1\|1301779_1303429_+	DUF5029 domain-containing protein	NA	NA	NA	NA
WP_032583081.1\|1303523_1304447_+	FimB/Mfa2 family fimbrial subunit	NA	NA	NA	NA
WP_022347418.1\|1304473_1306039_+	ATP/GTP-binding chaperonin	NA	NA	NA	NA
WP_065344390.1\|1306063_1307185_+	hypothetical protein	NA	NA	NA	NA
WP_049101057.1\|1307212_1308193_+	fimbrillin family protein	NA	NA	NA	NA
WP_080713762.1\|1308213_1309191_+	fimbrillin family protein	NA	NA	NA	NA
WP_065344391.1\|1309217_1310153_+	fimbrillin family protein	NA	NA	NA	NA
WP_005800512.1\|1310165_1311167_+	fimbrillin family protein	NA	NA	NA	NA
WP_065344392.1\|1311170_1312154_+	fimbrillin family protein	NA	NA	NA	NA
WP_005794899.1\|1312178_1313180_+	fimbrillin family protein	NA	NA	NA	NA
WP_081293190.1\|1313193_1314255_+	fimbrillin family protein	NA	NA	NA	NA
WP_065344393.1\|1314270_1315197_+	fimbrillin family protein	NA	NA	NA	NA
WP_065344394.1\|1315215_1316787_+	hypothetical protein	NA	NA	NA	NA
WP_065344395.1\|1316830_1317907_+	fimbrillin family protein	NA	NA	NA	NA
WP_065344396.1\|1317903_1318860_+	fimbrillin family protein	NA	NA	NA	NA
WP_081293119.1\|1318801_1320436_+	hypothetical protein	NA	NA	NA	NA
WP_081293120.1\|1320436_1321387_+	fimbrillin family protein	NA	NA	NA	NA
WP_065344398.1\|1321481_1322666_+	hypothetical protein	NA	NA	NA	NA
WP_065344399.1\|1322803_1324804_+	BACON domain-containing protein	NA	NA	NA	NA
WP_005786767.1\|1324809_1325178_+	hypothetical protein	NA	NA	NA	NA
WP_009292061.1\|1325219_1326203_+	DUF5106 domain-containing protein	NA	NA	NA	NA
WP_065344400.1\|1326336_1328460_-	RNA-binding transcriptional accessory protein	NA	NA	NA	NA
WP_081293121.1\|1328571_1330491_+	HAMP domain-containing histidine kinase	A0A1V0SGX0	Hokovirus	2.0e-23	32.5
WP_009292064.1\|1330607_1332347_+	2',3'-cyclic-nucleotide 2'-phosphodiesterase	NA	NA	NA	NA
WP_005817110.1\|1332353_1332827_+	GAF domain-containing protein	NA	NA	NA	NA
WP_005786780.1\|1332864_1333203_+	hypothetical protein	NA	NA	NA	NA
WP_065344401.1\|1333406_1335698_+	TonB-dependent receptor	A0A0P0I887	Acinetobacter_phage	3.9e-05	25.1
WP_065344402.1\|1335757_1336519_+	creatininase family protein	NA	NA	NA	NA
WP_005786786.1\|1336691_1337273_-	Crp/Fnr family transcriptional regulator	NA	NA	NA	NA
WP_065344403.1\|1337956_1339162_+	recombinase	NA	NA	NA	NA
WP_065344404.1\|1339240_1339879_-	hypothetical protein	A0A2D1GNI4	Pseudomonas_phage	5.3e-21	32.0
WP_065344405.1\|1339882_1340194_-	hypothetical protein	NA	NA	NA	NA
WP_065344406.1\|1340195_1340927_-	TIGR04255 family protein	NA	NA	NA	NA
WP_065344407.1\|1341158_1341614_-	hypothetical protein	NA	NA	NA	NA
WP_065344408.1\|1341610_1342006_-	peptidase M15	H2A0C2	Bacteroides_phage	1.9e-37	61.1
WP_009292857.1\|1342169_1342589_-\|holin	holin	NA	NA	NA	NA
WP_005821742.1\|1342743_1343076_-	hypothetical protein	NA	NA	NA	NA
WP_014299360.1\|1343079_1343364_-	hypothetical protein	NA	NA	NA	NA
WP_065344409.1\|1343414_1347878_-	hypothetical protein	H2A0C5	Bacteroides_phage	0.0e+00	46.7
WP_065344410.1\|1347858_1349922_-	hypothetical protein	NA	NA	NA	NA
WP_065344411.1\|1349923_1351792_-	hypothetical protein	R9ZYD7	Cellulophaga_phage	6.8e-08	71.4
WP_065344412.1\|1351784_1352042_-	hypothetical protein	NA	NA	NA	NA
WP_065344413.1\|1352080_1352422_-	hypothetical protein	NA	NA	NA	NA
WP_005819409.1\|1352480_1352960_-\|tail	phage tail protein	NA	NA	NA	NA
WP_065344414.1\|1352983_1353379_-	DUF3168 domain-containing protein	NA	NA	NA	NA
WP_005819406.1\|1353375_1353837_-	hypothetical protein	NA	NA	NA	NA
WP_032595096.1\|1353829_1354147_-\|head	phage head closure protein	NA	NA	NA	NA
WP_005819403.1\|1354146_1354443_-\|head,tail	phage gp6-like head-tail connector protein	NA	NA	NA	NA
WP_005819401.1\|1354506_1355649_-\|capsid	phage major capsid protein	S0A3Y1	Cellulophaga_phage	3.4e-10	23.3
1361667:1361682	attR	NA	NA	NA	NA

DBSCAN-SWA_2

1361554 : 1367708

Rhizobium_phage(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_065344420.1\|1361554_1361986_-	hypothetical protein	R9U4A4	Rhizobium_phage	9.7e-35	50.0
WP_065344421.1\|1362484_1362817_-	hypothetical protein	NA	NA	NA	NA
WP_065344422.1\|1362820_1363147_-	hypothetical protein	NA	NA	NA	NA
WP_155760237.1\|1363150_1363804_-	hypothetical protein	NA	NA	NA	NA
WP_065344424.1\|1363685_1364534_-	hypothetical protein	A0A2I7S3S2	Vibrio_phage	1.0e-19	44.5
WP_005819360.1\|1364688_1365039_-	DUF1064 domain-containing protein	B5AX30	Iodobacteriophage	5.5e-12	42.9
WP_081293123.1\|1365168_1365618_-	DUF4494 domain-containing protein	NA	NA	NA	NA
WP_065344426.1\|1365639_1366455_-	hypothetical protein	A9DEP2	Yersinia_phage	2.1e-06	32.9
WP_032566335.1\|1366441_1366927_-	hypothetical protein	A0A0F7L7F5	uncultured_marine_virus	1.8e-29	42.3
WP_005819351.1\|1366955_1367708_-	site-specific DNA-methyltransferase	X2KR14	Campylobacter_phage	6.1e-109	72.8

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP012706

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection