CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Prophage number
NZ_CP013718	Staphylococcus equorum strain C2014 plasmid pC2014-4, complete sequence	0 crisprs	NA	0
NZ_CP013716	Staphylococcus equorum strain C2014 plasmid pC2014-2, complete sequence	0 crisprs	NA	0
NZ_CP013717	Staphylococcus equorum strain C2014 plasmid pC2014-3, complete sequence	0 crisprs	NA	0
NZ_CP013714	Staphylococcus equorum strain C2014, complete genome	2 crisprs	WYL,cas3,csa3,DEDDh,DinG	8
NZ_CP013715	Staphylococcus equorum strain C2014 plasmid pC2014-1, complete sequence	0 crisprs	csa3	5
NZ_CP013719	Staphylococcus equorum strain C2014 plasmid pC2014-5, complete sequence	0 crisprs	NA	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP013714_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP013714_1

1757638-1757717

Orphan

Consensus_repeat	Method
ACCGTAACAACTTCGTTGAACGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP013714_1

>merge|NZ_CP013714|1|1757638-1757717|CRISPRCasFinder
ACCGTAACAACTTCGTTGAACGGATCTATGTCCGCAGTCCTCTCGACTGCATAAGCCACCGTAACAACTTCGTTGAACGG

>NZ_CP013714|1|1|1757638-1757717|CRISPRCasFinder
ACCGTAACAACTTCGTTGAACGG	ATCTATGTCCGCAGTCCTCTCGACTGCATAAGCC
ACCGTAACAACTTCGTTGAACGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP013714.1\|WP_065338378.1\|1763653_1764526_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224054
NZ_CP013714.1\|WP_065338368.1\|1753435_1754371_+\|manganese-dependent-inorganic-pyrophosphatase	unknown	unknown	gnl\|CDD\|235458
NZ_CP013714.1\|WP_065338377.1\|1762925_1763654_-\|ABC-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|378925
NZ_CP013714.1\|WP_081289101.1\|1760968_1761544_-\|DUF1700-domain-containing-protein	unknown	unknown	gnl\|CDD\|285278
NZ_CP013714.1\|WP_155759050.1\|1759799_1759970_+\|tyrosine-type-recombinase/integrase	unknown	unknown	gnl\|CDD\|274043
NZ_CP013714.1\|WP_065338375.1\|1761622_1762108_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013714.1\|WP_065338365.1\|1749012_1749825_+\|prephenate-dehydratase	unknown	unknown	gnl\|CDD\|223155
NZ_CP013714.1\|WP_065338371.1\|1757167_1757578_+\|YolD-like-family-protein	unknown	unknown	gnl\|CDD\|370161
NZ_CP013714.1\|WP_065338363.1\|1746211_1747678_-\|nicotinate-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|236426
NZ_CP013714.1\|WP_065338379.1\|1764546_1765209_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013714.1\|WP_065338370.1\|1755953_1756991_-\|beta-propeller-fold-lactonase-family-protein	unknown	unknown	gnl\|CDD\|378416
NZ_CP013714.1\|WP_065338367.1\|1752828_1753380_+\|cysteine-hydrolase-family-protein	unknown	unknown	gnl\|CDD\|224254
NZ_CP013714.1\|WP_065338372.1\|1758462_1759503_+\|choloylglycine-hydrolase	unknown	unknown	gnl\|CDD\|227264
NZ_CP013714.1\|WP_021339829.1\|1749910_1751470_-\|SLC13-family-permease	unknown	unknown	gnl\|CDD\|238535
NZ_CP013714.1\|WP_065338369.1\|1754507_1755887_+\|aldehyde-dehydrogenase	unknown	unknown	gnl\|CDD\|143454
NZ_CP013714.1\|WP_065338366.1\|1751632_1752691_-\|pectate-lyase	unknown	unknown	gnl\|CDD\|378931
NZ_CP013714.1\|WP_065338373.1\|1760120_1760972_-\|DUF4097-family-beta-strand-repeat-protein	unknown	unknown	gnl\|CDD\|372574
NZ_CP013714.1\|WP_065338364.1\|1747907_1748972_+\|nitric-oxide-synthase-oxygenase	unknown	unknown	gnl\|CDD\|238409
NZ_CP013714.1\|WP_065338376.1\|1762278_1762842_+\|thioredoxin-family-protein	unknown	unknown	gnl\|CDD\|379658
NZ_CP013714.1\|WP_002507168.1\|1757798_1757969_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP013714.1\|WP_065338368.1\|1753435_1754371_+\|manganese-dependent-inorganic-pyrophosphatase	gnl\|CDD\|235458	PRK05427, PRK05427, putative manganese-dependent inorganic pyrophosphatase; Provisional.	1.02011e-179
NZ_CP013714.1\|WP_065338377.1\|1762925_1763654_-\|ABC-transporter-permease-subunit	gnl\|CDD\|378925	pfam12698, ABC2_membrane_3, ABC-2 family transporter protein. This family is related to the ABC-2 membrane transporter family pfam01061.	0.00216777
NZ_CP013714.1\|WP_081289101.1\|1760968_1761544_-\|DUF1700-domain-containing-protein	gnl\|CDD\|285278	pfam08006, DUF1700, Protein of unknown function (DUF1700). This family contains many hypothetical bacterial proteins and putative membrane proteins.	3.32417e-46
NZ_CP013714.1\|WP_155759050.1\|1759799_1759970_+\|tyrosine-type-recombinase/integrase	gnl\|CDD\|274043	TIGR02225, Tyrosine_recombinase_XerD, tyrosine recombinase XerD. The phage integrase family describes a number of recombinases with tyrosine active sites that transiently bind covalently to DNA. Many are associated with mobile DNA elements, including phage, transposons, and phase variation loci. This model represents XerD, one of two closely related chromosomal proteins along with XerC (TIGR02224). XerC and XerD are site-specific recombinases which help resolve chromosome dimers to monomers for cell division after DNA replication. In species with a large chromosome and with homologs of XerD on other replicons, the chomosomal copy was preferred for building this model. This model does not detect all XerD, as some apparent XerD examples score below the trusted and noise cutoff scores. XerC and XerD interact with cell division protein FtsK. [DNA metabolism, DNA replication, recombination, and repair].	4.00852e-07
NZ_CP013714.1\|WP_065338365.1\|1749012_1749825_+\|prephenate-dehydratase	gnl\|CDD\|223155	COG0077, PheA, Prephenate dehydratase [Amino acid transport and metabolism].	1.22607e-82
NZ_CP013714.1\|WP_065338371.1\|1757167_1757578_+\|YolD-like-family-protein	gnl\|CDD\|370161	pfam08863, YolD, YolD-like protein. Members of this family are functionally uncharacterized. However it has been predicted that these proteins are functionally equivalent to the UmuD subunit of polymerase V from gram-negative bacteria. This family has been shown to belong to the WYL-like superfamily.	4.71777e-16
NZ_CP013714.1\|WP_065338363.1\|1746211_1747678_-\|nicotinate-phosphoribosyltransferase	gnl\|CDD\|236426	PRK09243, PRK09243, nicotinate phosphoribosyltransferase; Validated.	0
NZ_CP013714.1\|WP_065338370.1\|1755953_1756991_-\|beta-propeller-fold-lactonase-family-protein	gnl\|CDD\|378416	pfam10282, Lactonase, Lactonase, 7-bladed beta-propeller. This entry contains bacterial 6-phosphogluconolactonases (6PGL)YbhE-type (EC:3.1.1.31) which hydrolyze 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonising enzyme carboxy-cis,cis-muconate cyclase (EC:5.5.1.5) and muconate cycloisomerase (EC:5.5.1.1), which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold.	2.01678e-130
NZ_CP013714.1\|WP_065338367.1\|1752828_1753380_+\|cysteine-hydrolase-family-protein	gnl\|CDD\|224254	COG1335, PncA, Amidases related to nicotinamidase [Secondary metabolites biosynthesis, transport, and catabolism].	9.71126e-40
NZ_CP013714.1\|WP_065338372.1\|1758462_1759503_+\|choloylglycine-hydrolase	gnl\|CDD\|227264	COG4927, COG4927, Predicted choloylglycine hydrolase [General function prediction only].	6.70034e-142
NZ_CP013714.1\|WP_021339829.1\|1749910_1751470_-\|SLC13-family-permease	gnl\|CDD\|238535	cd01115, SLC13_permease, Permease SLC13 (solute carrier 13). The sodium/dicarboxylate cotransporter NaDC-1 has been shown to translocate Krebs cycle intermediates such as succinate, citrate, and alpha-ketoglutarate across plasma membranes rabbit, human, and rat kidney. It is related to renal and intestinal Na+/sulfate cotransporters and a few putative bacterial permeases. The SLC13-type proteins belong to the ArsB/NhaD superfamily of permeases that translocate sodium and various anions across biological membranes in all three kingdoms of life. A typical ArsB/NhaD permease is composed of 8-13 transmembrane helices.	1.53802e-76
NZ_CP013714.1\|WP_065338369.1\|1754507_1755887_+\|aldehyde-dehydrogenase	gnl\|CDD\|143454	cd07136, ALDH_YwdH-P39616, Bacillus subtilis aldehyde dehydrogenase ywdH-like. Uncharacterized Bacillus subtilis ywdH aldehyde dehydrogenase (locus P39616) most closely related to the ALDHs and fatty ALDHs of families 3 and 14, and similar sequences, are included in this CD.	0
NZ_CP013714.1\|WP_065338366.1\|1751632_1752691_-\|pectate-lyase	gnl\|CDD\|378931	pfam12708, Pectate_lyase_3, Pectate lyase superfamily protein. This family of proteins possesses a beta helical structure like Pectate lyase. This family is most closely related to glycosyl hydrolase family 28.	1.90194e-06
NZ_CP013714.1\|WP_065338373.1\|1760120_1760972_-\|DUF4097-family-beta-strand-repeat-protein	gnl\|CDD\|372574	pfam13349, DUF4097, Putative adhesin. This has a putative all-beta structure with a twenty-residue repeat with a highly conserved repeating GD, gly-asp, motif. It may form part of a bacterial adhesin.	1.92182e-11
NZ_CP013714.1\|WP_065338364.1\|1747907_1748972_+\|nitric-oxide-synthase-oxygenase	gnl\|CDD\|238409	cd00794, NOS_oxygenase_prok, Nitric oxide synthase (NOS) prokaryotic oxygenase domain. NOS produces nitric oxide (NO) by catalyzing a five-electron heme-based oxidation of a guanidine nitrogen of L-arginine to L-citrulline via two successive monooxygenation reactions producing N(omega)-hydroxy-L-arginine (NHA) as an intermediate. Nitric oxide synthases are homodimers. Most prokaryotes produce NO as a byproduct of denitrification, using a completely different set of enzymes than NOS. However, a few prokaryotes also have a NOS, consisting solely of the NOS oxygenase domain. Prokaryotic NOS binds to the substrate L-Arg, zinc, and to the cofactors heme and tetrahydrofolate.	0
NZ_CP013714.1\|WP_065338376.1\|1762278_1762842_+\|thioredoxin-family-protein	gnl\|CDD\|379658	pfam14595, Thioredoxin_9, Thioredoxin.	6.19139e-44
NZ_CP013714.1\|WP_065338378.1\|1763653_1764526_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224054	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms].	2.69225e-72

>NZ_CP013714.1|WP_065338371.1|1757167_1757578_+|YolD-like-family-protein
MIPKKYQNENDYRNIPREFLNANIPQGRGMVKWAPFATLPEQFETIQQYLVDQNKIDRPILSDDQLNDLNLQLHQALHTDSYIHIEYYKAGWLETTHIKIKNIDITHMFLEGYLIHTQETIKLSLFDITRITQDNS
>NZ_CP013714.1|WP_065338370.1|1755953_1756991_-|beta-propeller-fold-lactonase-family-protein
MTTTGYIGTYTKKEGKGVYRFELDEQTGSVTEVEIGYELEASTYVNQHNSFLYAVTREGDNCGVVSLKIEEDGKLKLINKCLASTEGSGCYVDVSPDGKFVFESVYGSGLARLYEANPETGEIIRLIQELEHNYPTGPHERQDQPHVHFISTTPDEKYVVAIDLGTDKIVTYKFNDHGFSEHAVSDFEPGDGPRHITFHENGKFAYVVHELSNVVSTVKYEDGKFTEVQRHSTIPENFEGDTKLAAVRQSHDQKFIYITNRGHDSIAIFKVSDDGSTISFVDIVSSGGEFPRDFNITDSDDFLVCAHQEGDYTLTVFKRDKITGQLEKVDHHESAPEGVCVQFLK
>NZ_CP013714.1|WP_065338369.1|1754507_1755887_+|aldehyde-dehydrogenase
MNSIEQTFHNSKQYFNTHETKDLKFRKKQLKLLGKSIKNHENELLDALQKDLGKNKVEAYATEIGFTLKSIKSARKELKNWAKRKQVNTPLYLFPTKSYIMKEPYGTVLIIGPFNYPFQLLIEPLIGAIAAGNTAILKPSEFTPHVADIVQQIIEDVFNPEYISVCQGDAETTQSLIHLPFDYVFFTGSEKVGRIVYRAASENLTPVTLELGGKSPAIVDESANTKVASERICFGKFTNAGQTCVSPDYILVNRKVKNQLIAALKNTITEFYGKSIQDSPDFGRIINQKHFDRLDHLLNVHKTEIAFGGQSDADDKYIAPTILDGITFDAKIMEDEIFGPILPIIPYDDFDEAIDLIRTKPKPLSLYLFSEDENATERVLHEISFGGGAINDTLMHLANPNLPFGGVGASGIGQYHGKYSFDTFSHDKSYVFKSTRLESSLIFPPYKGKFKYIKTFFNK
>NZ_CP013714.1|WP_065338368.1|1753435_1754371_+|manganese-dependent-inorganic-pyrophosphatase
MAKTYIFGHKNPDTDAIASAIIMADFEQQTGNSEAASYRLGEIGPETQFALDHFKVEAPELLNDNLADQNVILVDHNEFQQSADSIADATIQHVVDHHRISNFETTAPLYYRAEPVGCTATILYKMYKERGFEIKPEIAGLMISAIISDSLLFKSPTCTEEDVQAAEGLKAIANVDLESYGLDMLKAGASTTDKSISDILSMDAKSFNMGDYSTHIGQVNTVDIDEVFARQEELTKAMLETSANEKYDLFVLVVTDIINSDSKILVVGPETDKVGKAFNVELENNTAFLPGVVSRKKQVVPQITEALNEVV
>NZ_CP013714.1|WP_065338367.1|1752828_1753380_+|cysteine-hydrolase-family-protein
MKKSALIVVDYSNDFVADNGKLTCGIPGQQIEHYIVERIEVYNKKQQNIFFMMDLHFEENSYHPENKLFPPHNILGTSGRELYGKVNDIYQNILFNDHIHFLDKTRYDAFCGTSLDILLRERNVTHLEIVGVCTDICVLHTAITAYNLGYSISISHKGVASFNPTGHDWALDHFKNSLGAEVE
>NZ_CP013714.1|WP_065338366.1|1751632_1752691_-|pectate-lyase
MMINAKEFGLKGKSKSADTRAMQRALNYAKKHPSTTIYVPKGEFHIRKSLVIYESTTLLLDKGAVLKRCGKDALLKNGRRFKPYYSYNGNSHIYIAGGTFDMNGYDFPYNNTAMCIGHAQDIQIVDVTFKDIIGGHGLDACGVNGLYINNCKFLGFNDSDGTRTFSEAIQLDIQVPGAFPKFGTTDGTITKNVIIENCYFGNSDTPTMQSWNRAIGSHASRYNQFYQNIHIRFNTFEGIKQYALTPLKYKDTYIHHNIFKNCAGGVRFLAVKDGKNAKDLKGKQRSTQAGCNLNIYRNKFVGTIEKYAIRIQSYNNIKHKNIFIAQNEFDESQPKMYLKDIKNLFLSYDDKI
>NZ_CP013714.1|WP_021339829.1|1749910_1751470_-|SLC13-family-permease
MNNLNKGDMRRSQYLMFFSNKKEKKSYNSGQLIGLILGPLLFVLTLLFLQPEGLSSKGIFVLAITLWIATWWITEAIPIAATSLLPLILMPIGHVLSPEEVSSQYGNDIIFLFLGGFILAIAMERWNLHTRVALTIINTLGTSTGKILLGFMIATAFLSMFVSNTAAVMIMIPIGLAIIKEASELKNKGIKDSSITKFEQSIVLAIGYAGTIGGLGTLIGTPPLIILKGQYQSAFGEEISFAKWMIIGVPTVIVLLFLVWAYIRYIAFRHDMKALPGGKALIKRKLDELGKMKYEEKVVQAVFMLASFLWISREFLLKNWTYTSEIDDGTIAMFIAVLLFLIPAKNKEQHKRIIDWDVAKDLPWGVLILFGGGLALAEGISSSGLAAWLGDQLKLIEGVSPLIIVIVITVFVLFLTEITSNTATATMILPILATLSVAVNVHPLLLMAPAAMAANCAFMLPVGTPPNAIVFGTGRISIKRMASVGFWINMLSIIVIVLVVYFLVPPVLGIDVTKPLPLK
>NZ_CP013714.1|WP_065338365.1|1749012_1749825_+|prephenate-dehydratase
MKLYYLGPKGTFSYLAAKQYKSESEMDFEAKSNLYEVVQAVSNDDNSIAVVPIENSIEGTINIVADALTQQNIFAQGELHLDIQFALYGSQGATVNDISKVYSIAPAISQTSHYIQKQGFTYDYVDSTIKSLEKITDHVGAIAPLGSGEAYGYSPIEENIQDFPHNVTRFLVVSNQPSSIEDVEDASDTLLLITPQFDKPGLLASILNTFVLFNINLSWIESRPLKTQLGMYHFFVQADTPINEDLAKVIKILNTLDFQVSIIGSFNKLS
>NZ_CP013714.1|WP_065338364.1|1747907_1748972_+|nitric-oxide-synthase-oxygenase
MLNEAKSFIKTMHKELSYDEHATLDRIKEIEIAIQTNGTYEHTIEELTYGAKLAWRNSNRCIGRFFWNSLTVADARDIQTEDEFIATIENHITTATNNGKIKPYITIFSQHQPPEIYNNQLIRYAGYSDLGDPAERSITQLAEHLGWKGEHTHFDVLPLIYKMPEGNLKYHTYNPELIKEVPIAHDRYPKLKQLGLKWYAVPIISSMDLKIGGITYPTAPFNGWYMVNEIAVRNFTDSYRYNLLESVAEAFEFDTLKNNSFNKDRALVELNDAVYHSFKNEGVSIVDHLTASKQFERFEKNETKEGRDVTGKWSWLSPSLSPTLVANYHHGYKNEIREPNFFYKKSTSTGCPFH
>NZ_CP013714.1|WP_065338363.1|1746211_1747678_-|nicotinate-phosphoribosyltransferase
MYQYEDDTLVLHNDLYQINMAESYWNDGIHERLAVFDLYFRNMPFDSGYAVFNGLKRVIEYINQFHFSESDIEYLKSIGYQEDFLSYLKDLKFTGNIRSMHEGELCFGNEPLMRVEAPLIQAQLIETMLLNIVNFHTLITTKASRIRQVALDDMLMEFGTRRAQEAGAALWGARASYIGGFNSTSNVRAGKLFGIPVSGTHAHAMVQTYGDEYIAFKKYAERHKDCVFLVDTFHTLKSGVPTAIKVAKELGDKINFVGIRLDSGDIAYLSKEARRMLDEAGFTDAKIIASNDLDEQTITSLKSQGARVDSWGVGTKLITGYDQPALGAVYKLVAVEDSSGAYVDRIKLSNNAEKVTTPGKKKVYRIINKKTNKAEGDYITLDHEDPYETTPLKLFHPVHIYKMKFIKSFIAKDLHHDIYKDGKLVYDLPSEQEAQTYLKENLTYLWDENKRHLNPQEYPVDLSTACWENKHKRIFEVAEHVKEMEENE
>NZ_CP013714.1|WP_002507168.1|1757798_1757969_-|hypothetical-protein
MCNFIKGLFKFVLGTILTVSIAAGVGAVVFAYIFKKDFEDIESKTKEIVSDIETNN
>NZ_CP013714.1|WP_065338372.1|1758462_1759503_+|choloylglycine-hydrolase
MQSVKSDILTHRGSHFDLGVQTAQWMQQTPLLKNREKEWKKRMPRFDIHIKETYDIFQTYAPQIWEEIRGMQEVLNLPTRQMILNFAHYRFTPLKNSGCTVFLGQDYMIRNYDYHPATYDGRYLLFQPTDGGLAQIGPTSRVTGRMDGMNESGLSMGYNFMHRKHPGDGFVCYMVGRLILQYCKDVPEAIQLLKELPHRSSFSYIVMDKHLNHAIVEVSPRSVDVRYDRTCTNHFKLLTHENRNFTKESKERLNRLLKHAPTSLDKMSAFNLFNNPEYEIYSKLFKSWSGTIHTSMYEPQSLTAHITLGENKAPTIIDFGKWLDSESLDITSINGHLDTDLTFATY
>NZ_CP013714.1|WP_155759050.1|1759799_1759970_+|tyrosine-type-recombinase/integrase
MVQGIMGAPVKLVQQVLGHINITTTLNIYTHITEKMEFDALSNLDSYIESFDLLLL
>NZ_CP013714.1|WP_065338373.1|1760120_1760972_-|DUF4097-family-beta-strand-repeat-protein
MKKLFLSGLILFLVCFLLACVAWFGFEKQNNQLNSVDKEVNDKNIENLNIDSQNSEVQVKQGDEFSVTYKGKKNIDIMHKNKTLHVHETDNTEDHYGLNFNPFRQFDDEMVVTVPDKKLNHLNVSSKTNVINIDSINVKDAYISMKATGAARVFLSNVALDKLYYRGVNSPIDIKRSQITNANIKTKQASITSKKSLIEKSVLLADHGKIDLSRMDIASDFRASTQYGDIFMSYNEAPQDTLLRLNPSDGTSEVINNNFEDNKVGSGKHILEFYTDHGDIYIN
>NZ_CP013714.1|WP_081289101.1|1760968_1761544_-|DUF1700-domain-containing-protein
MAVDILDKITFLNELEQELDKLPRSERDKVMYEYEEYFFDQESEGKNEYQIIGALESPKKTGKELMARNAIVSAEFRPNINTIVRAIMASLGMGILSLIIILIPMIFVGIFMFILLLVALFFSLSPLLLIINGIINDNFSFAISNYLFAISYTGLGLLLFVIIAKFAQFVYRVILKYLRWNIKTIKGSAVE
>NZ_CP013714.1|WP_065338375.1|1761622_1762108_-|hypothetical-protein
MNRLHKRLIFCVFITMAFGTLLLVNYIKQEHSTDLSKLSINRVKIGSEINIDEYVEQDEVISKKYRLYLKREHPNLIFKVNKKDPRLKGITLTNDTTVQTNFNGTINNNVGKVTQTLGTHCKQKKLRKGFNAIIYKDKKNQIKLFIIYKHDKIKKVEIYKK
>NZ_CP013714.1|WP_065338376.1|1762278_1762842_+|thioredoxin-family-protein
MTSLETYFKNSQPLDQYIEAMTENKENLLSIYNSFSTPEEDDGRLEKIKASNYSKVLVITEDWCGDAMMNIPILKHISEALNLEARVFHRDENTDLIDQYLTNGTARSIPIFVFLNDDFEQQTVWGPRARQVQHFVEETRSKLPAKDDPTFEDKSTESYAIISNRFKTDSQMWKYVYDSILDKLIIN
>NZ_CP013714.1|WP_065338377.1|1762925_1763654_-|ABC-transporter-permease-subunit
MNSLQLVKYDIYSIIRSPLTYLALLLTILPLIGFTVLFVQQSDKIDGNMLLSIGSWFFSIMGLLFVIKTITRDISQGTIQLYMNKTSSRVGYVIAKVISIILIAIIITAILVGFVLIVQQIVDGENIKVDKIFELLWFFILFHLFFGLLLYLFSLVVPKTALIFTLGIFLILLVPFAEPFIPMIPKFGDNIQDALKYIPFSYLTSKTTTGDYTFSNWQWFITSASIVVLFIVNIFYASKKDI
>NZ_CP013714.1|WP_065338378.1|1763653_1764526_-|ABC-transporter-ATP-binding-protein
MELKDITKTYGNNNVLDHINFDFGQSQIVGLIGKNGVGKTTLMKVMNGNIIKYKGEVKVGNKDNIGYLIEHPKLYDNKSGLYNLKLFANVLGKGFDKKYANQIIDAFGMRPYVKKKVKKYSMGMKQKLAIAVSLMNKPKYLILDEPTNGMDPDGSIDVLKTIQSLVQELDMKILISSHKLEDIELICDRAVFLRDGNFVQDVDMKEGAPTDSTVLIVEQSNFNSALEYLNENFDVIQSKRENGEIIIKAQSSYQKVLKGLSDIDIFPEFIETRKSSLRDTYFNINQKGGQ
>NZ_CP013714.1|WP_065338379.1|1764546_1765209_-|hypothetical-protein
MKNLLIRNLKLCKWTIVIYAMLLLFSPLQLIIIPNSIFTNALYSAVAMILLFVSILDSGHVFRFNSKLGHRMAYDFFGSLPVSKKSLLNANYLTVIIFTLVGAAILSLYTMPNSHVSTSNIDFNISMPFSYIAVNFFAVPIAFKKYTEQKSDYISYIIYLLTMVILIPVIIVLLVVGICTLFNYSLGILNYFETIFNYGFLTLSIFCFVASYIIQYKKLI

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Crispr_ID: NZ_CP013714_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP013714_2

2628228-2628327

Orphan

Consensus_repeat	Method
ATCAAGCAACAGATAAAGCTAAAGA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP013714_2

>merge|NZ_CP013714|2|2628228-2628327|CRISPRCasFinder
ATCAAGCAACAGATAAAGCTAAAGATAAGGCCAACGAAATTAAAAAAGACGACGAGAAAAAAGAAGAATTGAAAAATCAAGCAACAGATAAAGCTAAAGA

>NZ_CP013714|2|2|2628228-2628327|CRISPRCasFinder
ATCAAGCAACAGATAAAGCTAAAGA	TAAGGCCAACGAAATTAAAAAAGACGACGAGAAAAAAGAAGAATTGAAAA
ATCAAGCAACAGATAAAGCTAAAGA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP013714.1\|WP_056936097.1\|2630577_2631210_+\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|224046
NZ_CP013714.1\|WP_065339061.1\|2637202_2638702_-\|sodium:pantothenate-symporter	unknown	unknown	gnl\|CDD\|271369
NZ_CP013714.1\|WP_065339045.1\|2617444_2617924_-\|glutathione-peroxidase	unknown	unknown	gnl\|CDD\|238207
NZ_CP013714.1\|WP_065339056.1\|2632413_2633433_-\|Gfo/Idh/MocA-family-oxidoreductase	unknown	unknown	gnl\|CDD\|223745
NZ_CP013714.1\|WP_002511723.1\|2628650_2628815_+\|YydF-family-exported-signaling-peptide	unknown	unknown	gnl\|CDD\|188592
NZ_CP013714.1\|WP_065339047.1\|2619152_2619527_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013714.1\|WP_065339046.1\|2617926_2618370_-\|MarR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197670
NZ_CP013714.1\|WP_065339048.1\|2619532_2620060_-\|acyl-CoA-thioesterase	unknown	unknown	gnl\|CDD\|224523
NZ_CP013714.1\|WP_065339054.1\|2628873_2629833_+\|YydG-family-peptide-radical-SAM-peptide-maturase	unknown	unknown	gnl\|CDD\|188593
NZ_CP013714.1\|WP_065339053.1\|2627310_2628135_+\|AraC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|367029
NZ_CP013714.1\|WP_065339059.1\|2635565_2636534_+\|LacI-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224525
NZ_CP013714.1\|WP_065339051.1\|2622742_2625718_-\|beta-galactosidase	unknown	unknown	gnl\|CDD\|236673
NZ_CP013714.1\|WP_065339049.1\|2620169_2621057_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176129
NZ_CP013714.1\|WP_065339052.1\|2625733_2627122_-\|melibiose:sodium-transporter-MelB	unknown	unknown	gnl\|CDD\|182453
NZ_CP013714.1\|WP_065339050.1\|2621487_2622579_+\|acyltransferase	unknown	unknown	gnl\|CDD\|376607
NZ_CP013714.1\|WP_065339058.1\|2634237_2635482_-\|DegT/DnrJ/EryC1/StrS-family-aminotransferase	unknown	unknown	gnl\|CDD\|99740
NZ_CP013714.1\|WP_065339057.1\|2633425_2634241_-\|HAD-IIB-family-hydrolase	unknown	unknown	gnl\|CDD\|319792
NZ_CP013714.1\|WP_002506314.1\|2631228_2631951_+\|peptide-ABC-transporter-permease	unknown	unknown	unknown
NZ_CP013714.1\|WP_021338994.1\|2618925_2619114_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013714.1\|WP_065339060.1\|2636685_2637075_-\|tautomerase-family-protein	unknown	unknown	gnl\|CDD\|379645

Protein	Function_ID	Function_description	E-value
NZ_CP013714.1\|WP_056936097.1\|2630577_2631210_+\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|224046	COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism].	1.61388e-14
NZ_CP013714.1\|WP_065339061.1\|2637202_2638702_-\|sodium:pantothenate-symporter	gnl\|CDD\|271369	cd11475, SLC5sbd_PutP, Na(+)/proline cotransporter PutP and related proteins; solute binding domain. Escherichia coli PutP catalyzes the Na+-coupled uptake of proline with a stoichiometry of 1:1. The putP gene is part of the put operon; this operon in addition encodes a proline dehydrogenase, allowing the use of proline as a source of nitrogen and/or carbon. This subfamily also includes the Bacillus subtilis Na+/proline cotransporter (OpuE) which has an osmoprotective instead of catabolic role. Expression of the opuE gene is under osmotic control and different sigma factors contribute to its regulation; it is also a putative CcpA-activated gene. This subfamily belongs to the solute carrier 5 (SLC5) transporter family.	6.49995e-65
NZ_CP013714.1\|WP_065339045.1\|2617444_2617924_-\|glutathione-peroxidase	gnl\|CDD\|238207	cd00340, GSH_Peroxidase, Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.	2.19132e-87
NZ_CP013714.1\|WP_065339056.1\|2632413_2633433_-\|Gfo/Idh/MocA-family-oxidoreductase	gnl\|CDD\|223745	COG0673, MviM, Predicted dehydrogenases and related proteins [General function prediction only].	2.19154e-48
NZ_CP013714.1\|WP_002511723.1\|2628650_2628815_+\|YydF-family-exported-signaling-peptide	gnl\|CDD\|188592	TIGR04077, hypothetical_protein_HMPREF0348_0872, exported signaling peptide, YydF/SAG_2028 family. This family describes a rare family of small proteins, about 50 residues in length, that includes YydF from Bacillus subtilis and SAG_2028 from Streptococcus agalactiae 2603V/R. Mutational analysis and genomic context show that members of this family likely are modified by a (variably present) radical SAM enzyme, are exported by an ABC transporter, and serve as signaling peptide. The member from Bacillus subtilis induces the LiaRS two-component system. [Regulatory functions, Protein interactions].	1.22324e-12
NZ_CP013714.1\|WP_065339057.1\|2633425_2634241_-\|HAD-IIB-family-hydrolase	gnl\|CDD\|319792	cd02605, HAD_SPP, sucrose-phosphatase, similar to Synechocystis sp PCC 6803 SPP. Sucrose-phosphatase (SPP; EC 3.1.3.24) catalyzes the dephosphorylation of sucrose-6(F)-phosphate (Suc6P)-the final step in the pathway of sucrose biosynthesis in plants and cyanobacteria. This family belongs to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	7.96986e-51
NZ_CP013714.1\|WP_065339046.1\|2617926_2618370_-\|MarR-family-transcriptional-regulator	gnl\|CDD\|197670	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein.	7.42813e-22
NZ_CP013714.1\|WP_065339048.1\|2619532_2620060_-\|acyl-CoA-thioesterase	gnl\|CDD\|224523	COG1607, COG1607, Acyl-CoA hydrolase [Lipid metabolism].	5.94601e-48
NZ_CP013714.1\|WP_065339054.1\|2628873_2629833_+\|YydG-family-peptide-radical-SAM-peptide-maturase	gnl\|CDD\|188593	TIGR04078, radical_SAM_domain_protein_protein, peptide modification radical SAM enzyme, YydG family. Members of this radical SAM protein family for peptide modification occur only in the context of members of family TIGR04077, which average about 50 amino acids in length. In Bacillus subtilis, this protein (YydG) appears to act on its cognate target peptide (YydF) prior to its export, and result in the creation of a signaling molecule that induces the LiaRS two-component system. [Regulatory functions, Protein interactions].	7.76509e-146
NZ_CP013714.1\|WP_065339053.1\|2627310_2628135_+\|AraC-family-transcriptional-regulator	gnl\|CDD\|367029	pfam02311, AraC_binding, AraC-like ligand binding domain. This family represents the arabinose-binding and dimerization domain of the bacterial gene regulatory protein AraC. The domain is found in conjunction with the helix-turn-helix (HTH) DNA-binding motif pfam00165. This domain is distantly related to the Cupin domain pfam00190.	7.47093e-29
NZ_CP013714.1\|WP_065339059.1\|2635565_2636534_+\|LacI-family-transcriptional-regulator	gnl\|CDD\|224525	COG1609, PurR, Transcriptional regulators [Transcription].	2.49859e-66
NZ_CP013714.1\|WP_065339051.1\|2622742_2625718_-\|beta-galactosidase	gnl\|CDD\|236673	PRK10340, ebgA, cryptic beta-D-galactosidase subunit alpha; Reviewed.	0
NZ_CP013714.1\|WP_065339049.1\|2620169_2621057_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|176129	cd08438, PBP2_CidR, The C-terminal substrate binding domain of LysR-like transcriptional regulator CidR, contains the type 2 periplasmic binding fold. This CD includes the substrate binding domain of CidR which positively up-regulates the expression of cidABC operon in the presence of acetic acid produced by the metabolism of excess glucose. The CidR affects the control of murein hydrolase activity by enhancing cidABC expression in the presence of acetic acid. Thus, up-regulation of cidABC expression results in increased murein hydrolase activity. This substrate binding domain has significant homology to the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	1.3227e-89
NZ_CP013714.1\|WP_065339052.1\|2625733_2627122_-\|melibiose:sodium-transporter-MelB	gnl\|CDD\|182453	PRK10429, PRK10429, melibiose:sodium transporter MelB.	0
NZ_CP013714.1\|WP_065339050.1\|2621487_2622579_+\|acyltransferase	gnl\|CDD\|376607	pfam01757, Acyl_transf_3, Acyltransferase family. This family includes a range of acyltransferase enzymes. This domain is found in many as yet uncharacterized C. elegans proteins and it is approximately 300 amino acids long.	2.4596e-20
NZ_CP013714.1\|WP_065339058.1\|2634237_2635482_-\|DegT/DnrJ/EryC1/StrS-family-aminotransferase	gnl\|CDD\|99740	cd00616, AHBA_syn, 3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn). AHBA_syn family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The members of this CD are involved in various biosynthetic pathways for secondary metabolites. Some well studied proteins in this CD are AHBA_synthase, protein product of pleiotropic regulatory gene degT, Arnb aminotransferase and pilin glycosylation protein. The prototype of this family, the AHBA_synthase, is a dimeric PLP dependent enzyme. AHBA_syn is the terminal enzyme of 3-amino-5-hydroxybenzoic acid (AHBA) formation which is involved in the biosynthesis of ansamycin antibiotics, including rifamycin B. Some members of this CD are involved in 4-amino-6-deoxy-monosaccharide D-perosamine synthesis. Perosamine is an important element in the glycosylation of several cell products, such as antibiotics and lipopolysaccharides of gram-positive and gram-negative bacteria. The pilin glycosylation protein encoded by gene pglA, is a galactosyltransferase involved in pilin glycosylation. Additionally, this CD consists of ArnB (PmrH) aminotransferase, a 4-amino-4-deoxy-L-arabinose lipopolysaccharide-modifying enzyme. This CD also consists of several predicted pyridoxal phosphate-dependent enzymes apparently involved in regulation of cell wall biogenesis. The catalytic lysine which is present in all characterized PLP dependent enzymes is replaced by histidine in some members of this CD.	4.76395e-129
NZ_CP013714.1\|WP_065339060.1\|2636685_2637075_-\|tautomerase-family-protein	gnl\|CDD\|379645	pfam14552, Tautomerase_2, Tautomerase enzyme.	1.40092e-29

>NZ_CP013714.1|WP_065339053.1|2627310_2628135_+|AraC-family-transcriptional-regulator
MQVLWKKFSKKLIDANLVECGIEVGVPNVGYNYTVFQTSVIHIVTHGEGIFKYNGKSFNLKKGDMFLLEKGMEVEYKPSFSKPWTYYWVGISGKQILDYLARSYIVDDHVIKGKDTSEIKKTIQDICNLSKTIASSNSHDILIMQHIYQLVYMLQEQFPKNFSVNVDIVNEDIQKAVEFINSNYHKNISVVDVAQYVNVTRSHLFKLFKKNLNCSPKAYLTYIRMYHASQLLIHTNNMICEVSSKVGYKDPLLFSKNFTMHFEISASEYRNNFS
>NZ_CP013714.1|WP_065339052.1|2625733_2627122_-|melibiose:sodium-transporter-MelB
MDRYLTGKQKLAFGFGAIGKDAIFNIVGLFLMFYITDIVGLPPAFVGVMLFVARIWDAINDPIMGMIVDNTKNNFGKFKTWLVIGTLANAIVTVLLFTNLDLSQTSMYIYISIMYISWGMTYTMMDIPYWSWLPNLTHNPREREEISVIPRFFASLAAFIVGTFGLFFIHKLGDVFGSGSDSVGIFVFAVICSIVFIFTIGVTVFKVPEDHEMEKQIGIKVNFKDIGRILFKNKELLAIMGVLLTFNLCLQTLNGSIIYYFKYVVNAEHLFSIFNSMILCEMLGLLLLPRFIKWVGRTRAFNTSITLIITGLVIILISGFVAPQSTILVIIGAGMLRVGSGFMIGITTVSLADVIDYGEVKFGQRNESVITSTNTFLTKASQAVAALIVGIGLSVLGYTPNEAQSEATVNGLRIMIIVAPLVFVSLTAFLYHKAFHLKGDFLNDIEKTLRYKRQREHRGNIK
>NZ_CP013714.1|WP_065339051.1|2622742_2625718_-|beta-galactosidase
MLEEQFHENMEIQHVNLMPRRAFYIPYQRREADYRLETRYNTKNVTLLNGDWHFEYFNSLEACLNQPQQIKKDILPVPSVWNLYGYDQIQYLNTQYPIPFDPPYVPKYNPCGRYKRSFELSSYDMQSDYHLNFEGVASAFYVWVNDQFVGYSQISHAISEFDISKFVLDGENTIQVLVLKYSDGTYFEDQDMFRHSGIFRDVYILKRAQSRVDDFKIETDLNDDLNKATIDVNLARKQGLDQVELHLYNPYGELVSSTQASEQCSFTVNKPQLWSAESPVLYTLAITTAQEVITQKIGIREVKIRDNQFYINGQSIKLRGTNHHDSDPKTGYTINESQFMRDLELMKQGNFNAIRTAHYPKSPLFYELTDQYGFYVMSEADLETHGVVRLYGEENTEHFNIITDDPKYQTAIIERIEASIIPLKNYSSIVSWSMGNESGFGVNVVEGLARAKELDATRPLHYEGTLHRNKSKDYDLSNVEMISRMYPSPEEIETTYLKNPNLDKPFILCEYAHAMGNSPGDLHDYQKLIEAYDSFIGGFVWEWCDHGIQTGVKGGKPIFRYGGDFGERLHDGNFCVDGIVSPDRIPHEGYYEFKHEHRPLKLIAQEEYQLTLRNQLDFTYIEDYLSFEATATYLNGKRQTFEIPFTELAPHMTQKIDLSDYININELSDVMLHYKLKYADKLRPAHFELGYDQIVYQRQSMTYQNTKTSSIAYKGDIHTIHVSIGDWIYTFNKIDASLKTVAHEGVIVMNQKTENSLWRAPTDNDINAKQEWAYAGYKDITTRVHDYRIVENKSDVSLIFDIALVNEAVPPVLLGTLTWTIQNDGTLTVNYDLAKDTLSPFLPRFGLAMTLPSNYEQVEYYGNGPYSSYQDKGVATYLDYFETTVTDNLSNDIKPQESGSHNQTTFVKVSNGRNAMVVTSGDTFSFNTTHYSLNQLTQTTHKDQLEVEGYTYLYIDYAQSGIGSNSCGPELNEAYRLNDTQIKFNFKLNFE
>NZ_CP013714.1|WP_065339050.1|2621487_2622579_+|acyltransferase
MKYFDEIPIIRAIATLLVVCVHLSVSYTNSENSQSMTIIAGYLNQIARLGTPIFAVISAFLLTNSTLRRGFDLNYFIRSRFTKIFIPYLIWTTVYLYYLGVVEVTLNSDTNFLEYYLYGTGNYHLYFILTVIEFYILFPILQKIKKGIPLLLAYGTLTLMNALWLLYNQHFTLDIPILGTFISSRSFILNWISYFMLGIVFAKYYEEINIMIKRYKAICLPIITVLFISFLLFIDLDNFVTSSHPIFLLYIPFFLVLLIYFNALIKNNKLIIKTLTHIGNYSMGIYLVHPLVKWLVHKIPVFDNRDSFFLYGLSFVLIVVISIVIIGLLIKIPNGNYIVPVPKKSKIVNNSKNNLTSEPATID
>NZ_CP013714.1|WP_065339049.1|2620169_2621057_-|LysR-family-transcriptional-regulator
MELRHMQYFVEVVKQKSMTKAAAKLFITQPTISNTIRLLEKELEVTLFNRYKNQIYLTDAGEAFFFQCKEMLKMYENIPNELSNLLELKSGHLKIGIPTIINIRRLIKLISQFHDSYPNVTFQLFENGSKKIENDIYYGDLDMGITVLPTNHKIFSTFTFLEEKLKLVVHKDHPLSHSDTIDIEDLEHQEFILFNSDFYLNDKIKNTCRNYGFNPNIIFETTQWSFIEEMLINNMGICILPEGILDLLDKDLKAISINEPSMKWELAIIWRKDIIVDSLTKNWIKFIQENYLLHH
>NZ_CP013714.1|WP_065339048.1|2619532_2620060_-|acyl-CoA-thioesterase
MENYKYPSDSKIVSTDQVLINDLNNYNTLFGGVLMKKIDNNATLSARRHARVKECVTASTDSVEFLHPITQSDSVCIESSVVYTGEKSMEIFCKVISEDMITAERKIAAIAFLTFVALDGNKKSIKVPKITAQTEDEKILYMYGEERAKMRKARRAQSKTLIKSLNLCKPWELEK
>NZ_CP013714.1|WP_065339047.1|2619152_2619527_-|hypothetical-protein
MVNEMDELTQCKLDLKSLREESPQLYEQLEYIASLTRQLSIHYKYLGLLMFSNNNEAIQNNRPILIRDSVLELYEREVEKVKQNNEFNFINEMILKFQFVAYSQIFLIVLGAEPSFVFNNTIIK
>NZ_CP013714.1|WP_021338994.1|2618925_2619114_-|hypothetical-protein
MSISECRYLCIKQDKSFEKGKLYWLFPTEVSTLDEKYFYVSNDGQLLTEAYKSSNFIKSVSN
>NZ_CP013714.1|WP_065339046.1|2617926_2618370_-|MarR-family-transcriptional-regulator
MDNEEMKLTNQLCFSAYNVNRLFGKFYEQQLKQFGLTFSQYLVLLALWEESPQTLLSIGGKLDLASNTLTPVLKRLERDGWVKRGKFESDKRQLIVTLTEKGHQEKNAVHKAISECIAGQFDLDEYLRAKAIMDNLELTLSKLLKDG
>NZ_CP013714.1|WP_065339045.1|2617444_2617924_-|glutathione-peroxidase
MNKNIYDITVKQKDGLTYQLSEYQAQVIIVVNTATKCGLSSQFEELEELYQKYKEQGLVVLGFPCNQFANQEPGTNEQVAETCKINFGVTFPIHSKINVNGKNESPLFTLLKNESSSLLGKSIKWNFTKFLIDRNGEVVKRYGPKDSPYSMEETIQSLL
>NZ_CP013714.1|WP_002511723.1|2628650_2628815_+|YydF-family-exported-signaling-peptide
MKENLKVEKQNKKEVMKDLEFKTLINDSQKLAKVNDLWYFVKSKQNRWVVGSGH
>NZ_CP013714.1|WP_065339054.1|2628873_2629833_+|YydG-family-peptide-radical-SAM-peptide-maturase
MYINSVSINLDSKCNAACDHCCFSCSPQSTIKMEDSYIRKQVLEFSKNPNIKVISFTGGEIFLNYQFLEALLKITKFYNKKITLISNGFWGASRRLLKKYFEDFQKYNVVALTISYDEYHSPYVKIKSIKNIFDYRMKYPEIEVSLNMAVTKEKMSDNILRELGSSVLGLKITKFPMITVGAAKKNIAKENIHNFYNVEKDKSILYCPGYELVYHHDGEIYPCCSPAIFDTSITLRESENQTFERTIEKLNSNLLLYIIRKEGFNWFIKILKNNNLMDSFEIPEDFPSVCSVCGSLFNSEEKIEFFKPYMEKYYENFEI
>NZ_CP013714.1|WP_056936097.1|2630577_2631210_+|ATP-binding-cassette-domain-containing-protein
MEIKNYFLKLKNKELVSNSDLYFYEGKINHIVGKNGVGKSQLAKDFILNRNGCIPKVVSQNTTLISSSSNVPNDISKDFLFDLLKCKFNNESKFKEISKMLNLESIPSKILIKNLSDGQKQKLKLLSFLLEDKSIIILDEITNALDKKTVNDIYSFLNKFISDNPSKVIINITHNLSDLSSINGAQFLFKDKRIEEYTSKDHLINDYINL
>NZ_CP013714.1|WP_002506314.1|2631228_2631951_+|peptide-ABC-transporter-permease
MLLEFKKSISNKIILTLGILFIFVFLLGYFLPVGIDKVSNLTYGQYFFSTYTVATEFGFLLFSFIIAYFINKEYSNKNTLFYKLLGDNVFKFFYKKAAILFIESLIFLTIGLTIISAVFSNFSHFLLLLTLFSLVLLQYILIIGTISVLSPNVLISIGISIIYWIGSIILVAINKTIFGIIAPFEASNNIYPLVEQVLNGNKAFLPANQILTIFIFFLILFVVNFILLIFAKKRWLKLGL
>NZ_CP013714.1|WP_065339056.1|2632413_2633433_-|Gfo/Idh/MocA-family-oxidoreductase
MIKYGIVGTGGIARIHAELINDIPNIDLFGAHDINDKSLNCFCGNYGTEPFRDLHALLSKIDVAVICSPNFCHMEHIVKSLVYNCDVLCEKPLTTSIAETNLLESFKNSKNIKAINLNYRNLLVVKKIKELIENNQIGEIISIKMSFLKNSALKRKQFTWRDDCSSKLSSGALGDLGIHLLDLSLYLTESNVEFETVKTKMMTKVSKKNDKKILVDDHSEAFYLMDNGTYINIETSKATRKEMCGLYIKITGTNGEIYFSSKKGEEINVDNGENKTIKLEERLYEDPPNEFFGWKDSFYHTHLKLLNAVKKRDNTDITTFEDGLCAQEILEYCIENYKL
>NZ_CP013714.1|WP_065339057.1|2633425_2634241_-|HAD-IIB-family-hydrolase
MKKHLILFDFDETYYKHNTMPEDIKDLRKMENTLNNLALSKRAIIAILTGSSITSVLNKMNSINMEFKPNHIFSDLSTRMFTFRQGHYEESKKFKKMVFSTPFRKKEVLEIITTMSSKHNCELKPQRTFRNQETLYNFYYFTKGNVNLDLKILNEIKDYAKTKNYTMKFNKCNPLAGDPNGAYDVDFIPNNGGKLFATKFLINLYSISTENIIGFGDSENDYEFLSFIKNSFVMCNSCDEMMRSEFNVSKYPYYKGINYHINNYLEDFYYD
>NZ_CP013714.1|WP_065339058.1|2634237_2635482_-|DegT/DnrJ/EryC1/StrS-family-aminotransferase
MNLKSINMFKHRNDLESIKKSKETHANISLLEYLSRIQNFENNKIKNEVQNVPFLPVDRIITEEEVKEILKALETFLPTGEFTSGKYIEIFENQLTEYLEIKNVITISSGTNALTIGLLALGVSKGDEVIIPSNSFAATENAVMSIGAIPVFVDIKNDFTICPEAIKKSISKKTKAILPVHLYGRYCEMDKIREVSKKYNIPLIEDACQGIGLENIAEKSDMAVLSFNPYKNLGVCGKAGAIITNNDELANTSRILSYHGFDIYEKNKKVRNFGFNAKIDNTQALIGSIRLKRLTFNNYKRLKIAEKYNQHLSQLQDIILPKFDENSVWHLYPIRIKNGKRDTIKDLLEDKGIHTEIYYPYLSHKQQTFNKKIHLKNTEKLHSELLCLPIYPNLTIDEQKYIIKNLKKSLEKSK
>NZ_CP013714.1|WP_065339059.1|2635565_2636534_+|LacI-family-transcriptional-regulator
MDIFDVAKGCGVSKSTVSRVLNNHPYVSENTRKKILEYIKKNNYTPNNIATYFRNKTTKSIAISIPYIDHPFFSRLSSEISRNFSTYGYKALIHQTFCSPIMEEEILLSLKRNEIDAVILCSVENEYTVIEEYLHYGIIISSNDAYLNENISNFHFDEIEIGYKATNYLIKKNIKHIGICLDNPFNSGQQMRLYGYKKALKEHGITHNEKLLFTSAFSIIDGIKIANKIKGNNIEIEGLFTGNDHVSAGIQKILKNEIITIGTDNHDICQITNPKLNSISLPISVMAQDICLHVIKCLNENSVIIVNKTYSTTIVENKECTL
>NZ_CP013714.1|WP_065339060.1|2636685_2637075_-|tautomerase-family-protein
MPLIKLDMIKGREKEEIKSILDITYNVMLDAFQAPKGDKYLIVNQHEDYEMEILDTGLGVERTDDVIVFTIVSRPRTKEQKTTFYKNLVNTLHDKVGIRKEDIMISLVENTDENWSFFNGEAQFLTGDL
>NZ_CP013714.1|WP_065339061.1|2637202_2638702_-|sodium:pantothenate-symporter
MDEITLYTWIGFILFMIFMVIVGYISSRKMKNIADFATGGGNIGPRVLGLSFAATYLSAATFLGYPGWSYEWGLNNLWLFLAMFIGGSTGVLMVAKKVRKLNTNQKSLSLPDWLGDFYNSDIMRVGTGIILLFNIFYIASQFVAGARIFEYLLGMSYFSGLVFIAVIVVLYVYVGGALADIYTDAIQVVIMAIAGLAVFISGIVIFWKGSITSTFAGIAKNLSNQNENLVKVFNPESVHFNSFAMVLGAIVIQWAFASAPHLFNKILGLKNEKDLGKMINTYIMVTGLCLLVLFGGIFARVALGDSVETSDLALLDYIIWAFPAVIVALFGVVILAAAMSTTDGLFVSISTVFANDIFLKFLVKRKIINISDEKANRIAFQISKISVPIVGLLSFLLVLQPPKHMSDIMWIGISGIAAGTLGPILHAIYAKRKAPARAAELSMFVGLGSYLVIYFGGIIPSTMSAGAVATFIGIATITIAAFFIKPKDNQKYNVEEGNN

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

536711 : 543201

Salmonella_phage(16.67%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_065337507.1\|536711_537776_+	glycosyltransferase family 2 protein	A0A192Y8W7	Salmonella_phage	1.3e-56	39.7
WP_021339421.1\|538280_538532_-	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA
WP_002508324.1\|538596_539190_-	hypothetical protein	NA	NA	NA	NA
WP_065337508.1\|539428_540145_-	7-carboxy-7-deazaguanine synthase QueE	A0A1U9WRB6	Streptococcus_virus	1.8e-49	43.0
WP_021339423.1\|540137_540563_-	6-carboxytetrahydropterin synthase QueD	S4U060	uncultured_phage	1.4e-06	24.4
WP_065337509.1\|540564_541236_-	7-cyano-7-deazaguanine synthase QueC	A0A2H4J8Q7	uncultured_Caudovirales_phage	4.3e-66	56.9
WP_065337510.1\|541481_542075_+	aminodeoxychorismate/anthranilate synthase component II	A0A0P0IKJ1	Acinetobacter_phage	6.4e-37	44.6
WP_065337511.1\|542058_543201_+	anthranilate synthase component I family protein	A0A0B5J984	Pandoravirus	2.9e-22	37.2

DBSCAN-SWA_2

553207 : 573700

uncultured_Caudovirales_phage(35.71%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002508312.1\|553207_554986_+	DNA helicase RecQ	M1PGQ0	Moumouvirus	2.0e-78	37.4
WP_065337518.1\|555275_556241_+	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	1.3e-26	33.8
WP_065337519.1\|556237_557752_+	ABC transporter permease/substrate-binding protein	NA	NA	NA	NA
WP_002508309.1\|557944_559000_+	histidinol-phosphate transaminase	A0A142C026	Faustovirus	2.4e-18	24.7
WP_002508308.1\|559270_559819_+	5'-3'-deoxyribonucleotidase	A0A0A0PKY7	Bacillus_phage	6.5e-28	37.2
WP_081289082.1\|560282_561230_-	diacylglycerol kinase family lipid kinase	A0A1V0SBJ0	Catovirus	1.1e-09	23.5
WP_065337521.1\|561411_562920_-	peptide MFS transporter	A0A0P0IY73	Acinetobacter_phage	1.3e-70	34.6
WP_065337522.1\|563177_564692_-	peptide MFS transporter	A0A0P0IY73	Acinetobacter_phage	1.1e-72	36.0
WP_065337523.1\|564990_565491_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	E7DN65	Pneumococcus_phage	1.6e-52	71.5
WP_065337524.1\|565505_566393_-	DMT family transporter	NA	NA	NA	NA
WP_002512096.1\|567103_567502_+	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	A0A2H4J545	uncultured_Caudovirales_phage	1.6e-52	74.2
WP_065337525.1\|567464_569570_+	class 1b ribonucleoside-diphosphate reductase subunit alpha	A0A2H4J2N6	uncultured_Caudovirales_phage	0.0e+00	89.9
WP_002508300.1\|569686_570655_+	class 1b ribonucleoside-diphosphate reductase subunit beta	A0A2H4J4P3	uncultured_Caudovirales_phage	1.9e-171	90.1
WP_065337526.1\|570985_571954_+	ABC transporter permease	A0A2H4IY97	uncultured_Caudovirales_phage	2.9e-135	77.6
WP_065337527.1\|571943_572903_+	iron chelate uptake ABC transporter family permease subunit	A0A2H4J116	uncultured_Caudovirales_phage	2.7e-05	52.0
WP_065337528.1\|572899_573700_+	ATP-binding cassette domain-containing protein	W5SAS9	Pithovirus	1.0e-13	29.8

DBSCAN-SWA_3

826188 : 834664

Synechococcus_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_037539562.1\|826188_826671_+	5-(carboxyamino)imidazole ribonucleotide mutase	A0A2P0VNU7	Tetraselmis_virus	1.3e-19	42.7
WP_065337704.1\|826657_827791_+	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA
WP_065337705.1\|827790_828492_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	G8EYA2	Synechococcus_phage	5.8e-45	39.9
WP_065337706.1\|828494_828755_+	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA
WP_065337707.1\|828754_829426_+	phosphoribosylformylglycinamidine synthase I	NA	NA	NA	NA
WP_065337708.1\|829418_831608_+	phosphoribosylformylglycinamidine synthase subunit PurL	A6N228	Microbacterium_phage	4.9e-135	38.7
WP_065337709.1\|831586_833074_+	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	3.6e-44	31.3
WP_065337710.1\|833066_834095_+	phosphoribosylformylglycinamidine cyclo-ligase	M4QRQ6	Synechococcus_phage	5.8e-62	42.5
WP_065337711.1\|834097_834664_+	phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	1.2e-29	40.3

DBSCAN-SWA_4

1118287 : 1161879

uncultured_Caudovirales_phage(42.31%)

terminase,capsid,tail,integrase,transposase

attL 1111878:1111893|attR 1126233:1126248

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1111878:1111893	attL	NA	NA	NA	NA
WP_065337211.1\|1118287_1119934_-\|transposase	IS1182 family transposase	A0ZS58	Staphylococcus_virus	5.3e-190	62.0
WP_065337906.1\|1120244_1120868_-	transcriptional repressor LexA	A0A1B2APZ1	Phage_Wrath	2.0e-17	63.8
WP_065337907.1\|1121009_1121243_+	hypothetical protein	NA	NA	NA	NA
WP_065337908.1\|1121373_1121622_+	DUF896 domain-containing protein	NA	NA	NA	NA
WP_065337909.1\|1121699_1123688_+	transketolase	NA	NA	NA	NA
WP_065337910.1\|1123899_1124139_+	hypothetical protein	NA	NA	NA	NA
WP_065337911.1\|1124223_1125309_-\|integrase	site-specific integrase	H0UST3	Bacillus_phage	4.0e-53	33.5
WP_065337912.1\|1125295_1125760_-	ImmA/IrrE family metallo-endopeptidase	NA	NA	NA	NA
WP_065337913.1\|1125818_1126175_-	helix-turn-helix transcriptional regulator	A0A2H4J6F9	uncultured_Caudovirales_phage	2.2e-08	37.4
WP_081289089.1\|1126178_1126586_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
1126233:1126248	attR	NA	NA	NA	NA
WP_065337914.1\|1126754_1126973_+	hypothetical protein	NA	NA	NA	NA
WP_065337915.1\|1126969_1127200_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_065337917.1\|1127584_1127851_+	hypothetical protein	NA	NA	NA	NA
WP_081289090.1\|1127957_1128929_+	hypothetical protein	A0A0A7S0N7	Clostridium_phage	2.0e-56	40.1
WP_065337918.1\|1129060_1129876_+	recombinase RecT	S6AVW6	Thermus_phage	5.9e-49	46.0
WP_065337919.1\|1129879_1130131_+	hypothetical protein	NA	NA	NA	NA
WP_065337920.1\|1130221_1130467_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_065337921.1\|1130683_1131427_+	DnaD domain protein	A0A2H4JAS0	uncultured_Caudovirales_phage	3.0e-23	56.0
WP_065337922.1\|1131438_1132224_+	cell division protein ZapE	A0A1J0MFK2	Staphylococcus_phage	5.2e-79	54.8
WP_065337923.1\|1132217_1132460_+	hypothetical protein	NA	NA	NA	NA
WP_065337925.1\|1133292_1133502_+	hypothetical protein	NA	NA	NA	NA
WP_065337926.1\|1133675_1134149_+	single-stranded DNA-binding protein	A0A1J0MFL8	Staphylococcus_phage	4.3e-28	47.8
WP_065337927.1\|1134189_1134681_+	hypothetical protein	NA	NA	NA	NA
WP_065337928.1\|1134692_1135085_+	hypothetical protein	NA	NA	NA	NA
WP_155759042.1\|1135087_1135237_+	hypothetical protein	NA	NA	NA	NA
WP_002507743.1\|1135345_1135552_+	hypothetical protein	NA	NA	NA	NA
WP_065337929.1\|1135556_1135808_+	hypothetical protein	NA	NA	NA	NA
WP_065337930.1\|1135820_1136048_+	hypothetical protein	NA	NA	NA	NA
WP_065337931.1\|1136064_1136322_+	hypothetical protein	NA	NA	NA	NA
WP_065337932.1\|1136322_1136535_+	hypothetical protein	NA	NA	NA	NA
WP_065337933.1\|1136552_1136843_+	hypothetical protein	NA	NA	NA	NA
WP_065337934.1\|1136839_1137373_+	dUTP pyrophosphatase	Q4ZDW8	Staphylococcus_virus	5.0e-65	66.7
WP_065337935.1\|1137409_1137613_+	hypothetical protein	NA	NA	NA	NA
WP_081289130.1\|1137596_1137857_+	hypothetical protein	A0A2H4J550	uncultured_Caudovirales_phage	1.6e-16	48.8
WP_065337937.1\|1137870_1138350_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_065337938.1\|1138370_1138583_+	DUF1381 domain-containing protein	NA	NA	NA	NA
WP_065337939.1\|1138585_1138783_+	hypothetical protein	NA	NA	NA	NA
WP_065337940.1\|1138808_1139138_+	helix-turn-helix transcriptional regulator	Q5YAA4	Bacillus_phage	1.1e-09	38.2
WP_065337941.1\|1139138_1139747_-	hypothetical protein	NA	NA	NA	NA
WP_155759043.1\|1139869_1140286_-	hypothetical protein	NA	NA	NA	NA
WP_065337943.1\|1140679_1140877_+	hypothetical protein	NA	NA	NA	NA
WP_065337944.1\|1141876_1142119_+	hypothetical protein	NA	NA	NA	NA
WP_065337945.1\|1142111_1142594_+	Holliday junction resolvase RecU	A0A2H4J2G2	uncultured_Caudovirales_phage	6.8e-29	42.9
WP_002512354.1\|1142616_1143066_+	hypothetical protein	NA	NA	NA	NA
WP_065337946.1\|1143272_1143737_+	hypothetical protein	A1EAE0	Streptococcus_phage	6.7e-34	56.6
WP_065337947.1\|1143733_1145128_+\|terminase	phage terminase large subunit	A0A2H4J7G6	uncultured_Caudovirales_phage	2.6e-161	57.8
WP_065337948.1\|1145181_1146891_+	hypothetical protein	A0A2H4J9U4	uncultured_Caudovirales_phage	1.1e-121	45.1
WP_065337949.1\|1146900_1148787_+\|capsid	capsid protein	A0A2H4J2F6	uncultured_Caudovirales_phage	5.2e-56	37.7
WP_065337950.1\|1148779_1149034_+	hypothetical protein	NA	NA	NA	NA
WP_065337951.1\|1149290_1149941_+	hypothetical protein	U3PIU5	Lactobacillus_phage	1.2e-07	32.0
WP_065337952.1\|1149944_1150313_+	hypothetical protein	A0A2H4J5H4	uncultured_Caudovirales_phage	2.3e-21	47.2
WP_065337953.1\|1150342_1151422_+\|capsid	major capsid protein E	A0A2H4J2G1	uncultured_Caudovirales_phage	3.8e-56	35.6
WP_065337954.1\|1151439_1151727_+	hypothetical protein	NA	NA	NA	NA
WP_065337955.1\|1151737_1152118_+	hypothetical protein	NA	NA	NA	NA
WP_065337956.1\|1152114_1152459_+	hypothetical protein	NA	NA	NA	NA
WP_065337957.1\|1152448_1152928_+	HK97 gp10 family phage protein	A0A1U9WQQ7	Geobacillus_phage	1.4e-21	41.3
WP_065337958.1\|1152930_1153341_+\|capsid	minor capsid protein	M4ZR34	Bacillus_phage	6.9e-06	26.8
WP_065337959.1\|1153378_1154326_+	Ig domain-containing protein	A0A1U9WQR3	Geobacillus_phage	9.6e-27	40.2
WP_065337960.1\|1154425_1154938_+	hypothetical protein	A0A2H4J2E6	uncultured_Caudovirales_phage	5.2e-11	29.8
WP_065339152.1\|1154997_1155273_+	hypothetical protein	NA	NA	NA	NA
WP_065337961.1\|1155313_1160380_+	peptidoglycan DD-metalloendopeptidase family protein	A0A1W6JQA9	Staphylococcus_phage	2.9e-146	53.4
WP_065337962.1\|1160394_1161879_+\|tail	phage tail protein	A0A2H4J1X6	uncultured_Caudovirales_phage	3.4e-111	45.7

DBSCAN-SWA_5

1338090 : 1346646

Bacillus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_065338080.1\|1338090_1339470_-	ATP-dependent DNA helicase RecQ	M1PGQ0	Moumouvirus	1.8e-58	33.9
WP_065338081.1\|1339456_1340422_-	hypothetical protein	NA	NA	NA	NA
WP_002507556.1\|1340531_1340780_+	ferredoxin	A0A127AYY7	Bacillus_phage	1.3e-15	49.3
WP_002507555.1\|1341060_1341606_-	ECF transporter S component	NA	NA	NA	NA
WP_081289095.1\|1342031_1343810_-	HAMP domain-containing protein	A0A1V0SGX0	Hokovirus	1.6e-22	26.2
WP_002507553.1\|1343790_1344516_-	response regulator transcription factor	W8CYM9	Bacillus_phage	1.6e-45	40.9
WP_002507552.1\|1344649_1345387_-	rRNA pseudouridine synthase	NA	NA	NA	NA
WP_081289096.1\|1345379_1345928_-	SMC-Scp complex subunit ScpB	A0A1B1IVT7	uncultured_Mediterranean_phage	5.6e-11	32.5
WP_065338082.1\|1345911_1346646_-	segregation protein A	A0A1B1IVW1	uncultured_Mediterranean_phage	5.9e-08	23.1

DBSCAN-SWA_6

1478359 : 1487597

uncultured_Mediterranean_phage(50.0%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_021339119.1\|1478359_1478878_-	adenine phosphoribosyltransferase	A0A1V0SKE5	Klosneuvirus	3.0e-30	47.6
WP_065338177.1\|1478890_1481170_-	single-stranded-DNA-specific exonuclease RecJ	A7KV88	Bacillus_phage	3.5e-67	28.6
WP_065338178.1\|1481487_1483764_-	protein translocase subunit SecDF	A0A1B1IVP7	uncultured_Mediterranean_phage	1.7e-29	33.3
WP_065338179.1\|1484127_1484388_-	preprotein translocase subunit YajC	A0A1B1IVR5	uncultured_Mediterranean_phage	7.4e-06	44.3
WP_065338180.1\|1484407_1485547_-\|tRNA	tRNA guanosine(34) transglycosylase Tgt	A0A1B1IVQ4	uncultured_Mediterranean_phage	2.1e-84	45.5
WP_065338181.1\|1485567_1486593_-\|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	NA	NA	NA	NA
WP_065338182.1\|1486595_1487597_-	Holliday junction branch migration DNA helicase RuvB	B3GAM6	uncultured_virus	9.9e-06	29.9

DBSCAN-SWA_7

1613418 : 1621925

Staphylococcus_phage(85.71%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_065338271.1\|1613418_1614678_+	NAD(P)/FAD-dependent oxidoreductase	A0A2H4PQX1	Staphylococcus_phage	5.9e-40	77.9
WP_081289099.1\|1614824_1615196_-	hypothetical protein	NA	NA	NA	NA
WP_081289100.1\|1615114_1615468_-	hypothetical protein	A0A1X9I5T2	Streptococcus_phage	1.7e-16	42.1
WP_065338274.1\|1615992_1616304_-	rhodanese-like domain-containing protein	A0A2H4PQR9	Staphylococcus_phage	3.1e-35	70.9
WP_065338275.1\|1616322_1618737_-\|tRNA	leucine--tRNA ligase	A0A2H4PQS0	Staphylococcus_phage	0.0e+00	85.6
WP_065338276.1\|1619134_1620304_-	MFS transporter	A0A2H4PQR6	Staphylococcus_phage	7.1e-165	75.9
WP_065338277.1\|1620414_1621368_+	TIGR01212 family radical SAM protein	A0A2H4PQV5	Staphylococcus_phage	1.2e-66	82.6
WP_065338278.1\|1621364_1621925_+	methyltransferase domain-containing protein	A0A2H4PQV0	Staphylococcus_phage	2.8e-66	62.7

DBSCAN-SWA_8

1625087 : 1648557

Staphylococcus_phage(95.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_065338280.1\|1625087_1626089_+	proline dehydrogenase	A0A2H4PQT6	Staphylococcus_phage	5.6e-126	67.9
WP_065338281.1\|1626202_1626661_-	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	3.9e-58	76.3
WP_065338282.1\|1626673_1627855_-	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	A0A2H4PQS2	Staphylococcus_phage	3.6e-164	70.5
WP_065338283.1\|1627865_1628498_-	riboflavin synthase	A0A2H4PQS5	Staphylococcus_phage	1.1e-71	64.3
WP_065338284.1\|1628504_1629548_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	A0A2H4PQS8	Staphylococcus_phage	2.4e-127	63.8
WP_065338285.1\|1630125_1631595_-	SidA/IucD/PvdA family monooxygenase	A0A2H4PQX2	Staphylococcus_phage	9.4e-13	67.3
WP_065338286.1\|1631771_1632698_+	osmoprotectant ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_065338287.1\|1633273_1634125_-	autolysin	A0A1W6JNR1	Staphylococcus_phage	5.7e-39	43.3
WP_002507285.1\|1634288_1634513_-	hypothetical protein	NA	NA	NA	NA
WP_065338288.1\|1634733_1635204_+	sigma-70 family RNA polymerase sigma factor	A0A2H4PQT5	Staphylococcus_phage	7.3e-28	47.3
WP_002507282.1\|1635216_1635639_+	hypothetical protein	NA	NA	NA	NA
WP_065338289.1\|1635649_1636099_-	hypothetical protein	A0A2H4PQT8	Staphylococcus_phage	8.8e-23	52.2
WP_065338290.1\|1637055_1637769_-	transaldolase	R9TM64	Synechococcus_phage	1.5e-19	36.0
WP_002507278.1\|1638052_1638358_+	hypothetical protein	NA	NA	NA	NA
WP_065338291.1\|1638424_1638790_+	fluoride efflux transporter CrcB	A0A2H4PQR0	Staphylococcus_phage	3.3e-36	61.2
WP_065338292.1\|1638786_1639143_+	CrcB family protein	NA	NA	NA	NA
WP_065338293.1\|1639338_1640175_-	aldo/keto reductase	A0A2H4PQR8	Staphylococcus_phage	1.2e-110	67.9
WP_065338294.1\|1640368_1641277_-	NERD domain-containing protein	A0A2H4PQQ8	Staphylococcus_phage	1.3e-100	77.4
WP_065338295.1\|1641369_1642569_-	methionine adenosyltransferase	A0A2H4PQS6	Staphylococcus_phage	9.8e-194	86.1
WP_065338296.1\|1642957_1644547_+	phosphoenolpyruvate carboxykinase (ATP)	A0A2H4PQN1	Staphylococcus_phage	8.3e-257	81.1
WP_065339162.1\|1644600_1645371_-	S9 family peptidase	A0A2H4PQM6	Staphylococcus_phage	1.1e-97	69.8
WP_065338297.1\|1645378_1645855_-	nucleoside triphosphatase YtkD	A0A2H4PQM4	Staphylococcus_phage	4.0e-42	52.9
WP_002507269.1\|1645917_1646154_+	membrane protein insertion efficiency factor YidD	A0A2H4PQM5	Staphylococcus_phage	1.9e-29	79.2
WP_065338298.1\|1646150_1647155_-	o-succinylbenzoate synthase	A0A2H4PQM0	Staphylococcus_phage	1.3e-90	50.5
WP_065338299.1\|1647168_1648557_-	o-succinylbenzoate--CoA ligase	A0A2H4PQM9	Staphylococcus_phage	1.6e-168	62.8

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP013715

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

0 : 25617

Yellowstone_lake_phycodnavirus(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_065339178.1\|479_728_+	CopG family transcriptional regulator	NA	NA	NA	NA
WP_065339179.1\|851_1034_+	hypothetical protein	NA	NA	NA	NA
WP_065339180.1\|1057_1312_+	hypothetical protein	NA	NA	NA	NA
WP_065339181.1\|1334_2684_+	hypothetical protein	NA	NA	NA	NA
WP_065339182.1\|3127_3358_+	hypothetical protein	NA	NA	NA	NA
WP_065339183.1\|3430_3940_-	cupin domain-containing protein	NA	NA	NA	NA
WP_002508631.1\|4442_4679_+	hypothetical protein	NA	NA	NA	NA
WP_065339184.1\|5008_5335_-	four-helix bundle copper-binding protein	NA	NA	NA	NA
WP_081289132.1\|5803_6157_-	hypothetical protein	NA	NA	NA	NA
WP_065339186.1\|6157_6568_-	hypothetical protein	NA	NA	NA	NA
WP_155759075.1\|7423_7612_+	hypothetical protein	NA	NA	NA	NA
WP_065339187.1\|7684_8803_+	cytochrome aa3 quinol oxidase subunit II	NA	NA	NA	NA
WP_065339188.1\|8805_10794_+	cytochrome aa3 quinol oxidase subunit I	NA	NA	NA	NA
WP_065339189.1\|10783_11389_+	cytochrome aa3 quinol oxidase subunit III	NA	NA	NA	NA
WP_002508624.1\|11385_11676_+	cytochrome aa3 quinol oxidase subunit IV	NA	NA	NA	NA
WP_002508623.1\|12246_12450_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_065339190.1\|14035_14305_+	hypothetical protein	NA	NA	NA	NA
WP_155759072.1\|14854_14992_+	hypothetical protein	NA	NA	NA	NA
WP_065339191.1\|15214_15442_+	hypothetical protein	NA	NA	NA	NA
WP_065339094.1\|15921_17013_+	Glu/Leu/Phe/Val dehydrogenase	NA	NA	NA	NA
WP_065339093.1\|17182_18829_+	alpha-keto acid decarboxylase family protein	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	2.3e-28	24.0
WP_065339192.1\|18927_20415_+	aldehyde dehydrogenase family protein	NA	NA	NA	NA
WP_065339193.1\|20935_21673_+	metal ABC transporter ATP-binding protein	A0A1V0SE00	Indivirus	1.6e-13	27.8
WP_065339194.1\|21665_22505_+	metal ABC transporter permease	NA	NA	NA	NA
WP_065339195.1\|22523_23477_+	zinc ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_065339196.1\|23733_25617_+	cadmium-translocating P-type ATPase	E4ZFI9	Streptococcus_phage	2.7e-89	33.4

DBSCAN-SWA_2

40797 : 50151

Burkholderia_phage(25.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_065339213.1\|40797_41403_+	recombinase family protein	E5FFF9	Burkholderia_phage	1.8e-15	31.1
WP_065339214.1\|41494_41809_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_065339215.1\|41827_44341_+	cadmium-translocating P-type ATPase	E4ZFI9	Streptococcus_phage	4.0e-157	45.9
WP_065339216.1\|44417_44849_-	universal stress protein	NA	NA	NA	NA
WP_155759073.1\|45048_46593_+	BCCT family transporter	A0A2I7QNT1	Vibrio_phage	1.5e-21	25.9
WP_081289133.1\|47453_47834_-	hypothetical protein	NA	NA	NA	NA
WP_065339218.1\|47847_48321_-	hypothetical protein	NA	NA	NA	NA
WP_065339219.1\|48341_49025_-	6-carboxyhexanoate--CoA ligase	NA	NA	NA	NA
WP_065339220.1\|49017_50151_-	pyridoxal phosphate-dependent aminotransferase family protein	V5LQ39	Emiliania_huxleyi_virus	9.1e-16	23.5

DBSCAN-SWA_3

60449 : 61211

Trichoplusia_ni_ascovirus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_065339228.1\|60449_61211_-	glucose 1-dehydrogenase	Q06VL0	Trichoplusia_ni_ascovirus	4.2e-17	27.6

DBSCAN-SWA_4

67097 : 67892

Staphylococcus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_155759076.1\|67097_67892_-	glycerophosphodiester phosphodiesterase	A0A076G4Q2	Staphylococcus_phage	1.7e-40	40.5

DBSCAN-SWA_5

72183 : 72876

Staphylococcus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_065339236.1\|72183_72876_+	ATP-binding cassette domain-containing protein	A0A2H4PQG7	Staphylococcus_phage	6.7e-38	42.9

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP013714

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP013715

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection