CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP016072	Staphylococcus pseudintermedius strain NA45 isolate UWMNA45 chromosome, complete genome	3 crisprs	RT,WYL,PrimPol,DEDDh,cas3,DinG,csa3,c2c10_CAS-V-U3	0	0	13	3

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP016072_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP016072_1

745909-746051

Orphan

Consensus_repeat	Method
TAAAAAATCATGTGAAACCAATGATATCAAGGGTTTTGTGAGCTTTCGAGTAAA	CRISPRCasFinder

1 spacers

PrimPol

The CRISPR arrays of NZ_CP016072_1

>merge|NZ_CP016072|1|745909-746051|CRISPRCasFinder
TAAAAAATCATGTGAAACCAATGATATCAAGGGTTTTGTGAGCTTTCGAGTAAAGAGGGGAATTTTCGAGTAACTCAAAAGAAAAATATTAAAAAATCATGTGAAACCAATGATATCAAGGGTTTTGTAAGCTTTCGAGTAAA

>NZ_CP016072|1|1|745909-746051|CRISPRCasFinder
TAAAAAATCATGTGAAACCAATGATATCAAGGGTTTTGTGAGCTTTCGAGTAAA	GAGGGGAATTTTCGAGTAACTCAAAAGAAAAATAT
TAAAAAATCATGTGAAACCAATGATATCAAGGGTTTTGTAAGCTTTCGAGTAAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP016072.1\|WP_110148278.1\|746457_746547_+\|30S-ribosomal-protein-S9	unknown	unknown	gnl\|CDD\|178888
NZ_CP016072.1\|WP_014613242.1\|743162_743600_+\|50S-ribosomal-protein-L13	unknown	unknown	gnl\|CDD\|181703
NZ_CP016072.1\|WP_014613243.1\|743613_744012_+\|30S-ribosomal-protein-S9	unknown	unknown	gnl\|CDD\|178888
NZ_CP016072.1\|WP_020219634.1\|752745_753180_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP016072.1\|WP_014613253.1\|758131_758560_+\|galactose-6-phosphate-isomerase-subunit-LacA	unknown	unknown	gnl\|CDD\|181505
NZ_CP016072.1\|WP_014613239.1\|740475_741342_+\|energy-coupling-factor-transporter-ATPase	unknown	unknown	gnl\|CDD\|184205
NZ_CP016072.1\|WP_014613236.1\|737860_738805_+\|DNA-directed-RNA-polymerase-subunit-alpha	unknown	unknown	gnl\|CDD\|235359
NZ_CP016072.1\|WP_037542453.1\|750274_751195_+\|sce7725-family-protein	unknown	unknown	unknown
NZ_CP016072.1\|WP_014613237.1\|738821_739190_+\|50S-ribosomal-protein-L17	unknown	unknown	gnl\|CDD\|235522
NZ_CP016072.1\|WP_037542436.1\|739669_740479_+\|energy-coupling-factor-transporter-ATPase	unknown	unknown	gnl\|CDD\|184207
NZ_CP016072.1\|WP_065354091.1\|744435_745872_+\|winged-helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225420
NZ_CP016072.1\|WP_037542457.1\|757174_757927_+\|DeoR/GlpR-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224268
NZ_CP016072.1\|WP_037542450.1\|749427_750300_+\|sce7726-family-protein	unknown	unknown	unknown
NZ_CP016072.1\|WP_063284678.1\|742150_742954_+\|tRNA-pseudouridine(38-40)-synthase-TruA	unknown	unknown	gnl\|CDD\|234577
NZ_CP016072.1\|WP_014613248.1\|748700_749246_-\|cysteine-hydrolase	unknown	unknown	gnl\|CDD\|238496
NZ_CP016072.1\|WP_014613240.1\|741331_742135_+\|energy-coupling-factor-transporter-transmembrane-protein-EcfT	unknown	unknown	gnl\|CDD\|223692
NZ_CP016072.1\|WP_015729503.1\|751560_752280_+\|RES-family-NAD+-phosphorylase	unknown	unknown	gnl\|CDD\|378053
NZ_CP016072.1\|WP_037542455.1\|754183_757018_+\|DEAD/DEAH-box-helicase-family-protein	PrimPol	COG4951_PrimPol_CAS-I:CAS-III	gnl\|CDD\|227287
NZ_CP016072.1\|WP_015729500.1\|753368_753905_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|340863
NZ_CP016072.1\|WP_014613235.1\|737395_737785_+\|30S-ribosomal-protein-S11	unknown	unknown	gnl\|CDD\|180007

Protein	Function_ID	Function_description	E-value
NZ_CP016072.1\|WP_110148278.1\|746457_746547_+\|30S-ribosomal-protein-S9	gnl\|CDD\|178888	PRK00132, rpsI, 30S ribosomal protein S9; Reviewed.	5.01598e-09
NZ_CP016072.1\|WP_014613242.1\|743162_743600_+\|50S-ribosomal-protein-L13	gnl\|CDD\|181703	PRK09216, rplM, 50S ribosomal protein L13; Reviewed.	6.54958e-97
NZ_CP016072.1\|WP_014613243.1\|743613_744012_+\|30S-ribosomal-protein-S9	gnl\|CDD\|178888	PRK00132, rpsI, 30S ribosomal protein S9; Reviewed.	4.39067e-82
NZ_CP016072.1\|WP_014613253.1\|758131_758560_+\|galactose-6-phosphate-isomerase-subunit-LacA	gnl\|CDD\|181505	PRK08621, PRK08621, galactose-6-phosphate isomerase subunit LacA; Reviewed.	2.99243e-84
NZ_CP016072.1\|WP_014613239.1\|740475_741342_+\|energy-coupling-factor-transporter-ATPase	gnl\|CDD\|184205	PRK13646, cbiO, energy-coupling factor transporter ATPase.	3.30505e-153
NZ_CP016072.1\|WP_014613236.1\|737860_738805_+\|DNA-directed-RNA-polymerase-subunit-alpha	gnl\|CDD\|235359	PRK05182, PRK05182, DNA-directed RNA polymerase subunit alpha; Provisional.	1.08861e-174
NZ_CP016072.1\|WP_014613237.1\|738821_739190_+\|50S-ribosomal-protein-L17	gnl\|CDD\|235522	PRK05591, rplQ, 50S ribosomal protein L17; Validated.	1.01414e-60
NZ_CP016072.1\|WP_037542436.1\|739669_740479_+\|energy-coupling-factor-transporter-ATPase	gnl\|CDD\|184207	PRK13648, cbiO, cobalt transporter ATP-binding subunit; Provisional.	1.93494e-132
NZ_CP016072.1\|WP_065354091.1\|744435_745872_+\|winged-helix-turn-helix-transcriptional-regulator	gnl\|CDD\|225420	COG2865, COG2865, Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen [Transcription].	9.57997e-66
NZ_CP016072.1\|WP_037542457.1\|757174_757927_+\|DeoR/GlpR-transcriptional-regulator	gnl\|CDD\|224268	COG1349, GlpR, Transcriptional regulators of sugar metabolism [Transcription / Carbohydrate transport and metabolism].	2.40331e-76
NZ_CP016072.1\|WP_063284678.1\|742150_742954_+\|tRNA-pseudouridine(38-40)-synthase-TruA	gnl\|CDD\|234577	PRK00021, truA, tRNA pseudouridine(38-40) synthase TruA.	6.2709e-119
NZ_CP016072.1\|WP_014613248.1\|748700_749246_-\|cysteine-hydrolase	gnl\|CDD\|238496	cd01014, nicotinamidase_related, Nicotinamidase_ related amidohydrolases. Cysteine hydrolases of unknown function that share the catalytic triad with other amidohydrolases, like nicotinamidase, which converts nicotinamide to nicotinic acid and ammonia.	2.83325e-54
NZ_CP016072.1\|WP_014613240.1\|741331_742135_+\|energy-coupling-factor-transporter-transmembrane-protein-EcfT	gnl\|CDD\|223692	COG0619, CbiQ, ABC-type cobalt transport system, permease component CbiQ and related transporters [Inorganic ion transport and metabolism].	1.74087e-42
NZ_CP016072.1\|WP_015729503.1\|751560_752280_+\|RES-family-NAD+-phosphorylase	gnl\|CDD\|378053	pfam08808, RES, RES domain. This presumed domain contains 3 highly conserved polar groups that could form an active site. These are an arginine, glutamate and serine, hence the RES domain. The domain is found widely distributed in bacteria. The domain is about 150 residues in length.	7.09043e-13
NZ_CP016072.1\|WP_037542455.1\|754183_757018_+\|DEAD/DEAH-box-helicase-family-protein	gnl\|CDD\|227287	COG4951, COG4951, Uncharacterized protein conserved in bacteria [Function unknown].	5.36128e-62
NZ_CP016072.1\|WP_015729500.1\|753368_753905_+\|hypothetical-protein	gnl\|CDD\|340863	cd06173, MFS_MefA_like, Macrolide efflux protein A and similar proteins of the Major Facilitator Superfamily of transporters. This family is composed of Streptococcus pyogenes macrolide efflux protein A (MefA) and similar transporters, many of which remain uncharacterized. Some members may be multidrug resistance (MDR) transporters, which are drug/H+ antiporters (DHAs) that mediate the efflux of a variety of drugs and toxic compounds, conferring resistance to these compounds. MefA confers resistance to 14-membered macrolides including erythromycin and to 15-membered macrolides. It functions as an efflux pump to regulate intracellular macrolide levels. The MefA-like family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	4.84543e-09
NZ_CP016072.1\|WP_014613235.1\|737395_737785_+\|30S-ribosomal-protein-S11	gnl\|CDD\|180007	PRK05309, PRK05309, 30S ribosomal protein S11; Validated.	2.27958e-89

>NZ_CP016072.1|WP_065354091.1|744435_745872_+|winged-helix-turn-helix-transcriptional-regulator
MTSSKYIEYLQNEVEGQLLDRKRASINPKDVAQHISAFANAEGGKLVIGIEDNGEISGFNHSKAKNKEVYIEAPFEHLYRIPKYTHEIIEVKKRDGTMDEILIFDIEPSYDAIITLKDDSVYLRINDKSRKLTHNQITNLEYDRGSRRFEEELVEYSSIEDVDENLVSEFKQLLDTNVDNEKLLKARGFMREGKLTVAGLLLFSNNINFYLPSARIRFMRYEGTKEESGARLNVVKDITFDKALPVAIREARAFINTQLREYTFLGKEGRFVTLPEYPEFAWFEGMINAIIHRRYDNQGDHIRIKMFDDRLEISSPGVLPASVTLENIKEERYSRNPKLAAALTQYKWVRESNEGVGRIFDEMKDYFLDDPVYSEPNNSSVQLTLKNNVVARKERETGRVSNIITPELFESLNEQHELIVRHLYNQGELTASKIANIIQRSVPTARKRLKELEEMNIISTHGSSKNDPKRTYYLLGFE
>NZ_CP016072.1|WP_014613243.1|743613_744012_+|30S-ribosomal-protein-S9
MTLAQVEYRGTGRRKNSVARVRLVPGEGNIKVNDRDVREYLPFESLILDLNQPFDVTETKGNYDVLVNVHGGGFTGQAQAIRHGIARALLEADPEYRGSLKRAGLLTRDPRMKERKKPGLKKARRSPQFSKR
>NZ_CP016072.1|WP_014613242.1|743162_743600_+|50S-ribosomal-protein-L13
MRQTFMANESNIERKWYVVDAEGQTLGRLSSEVAAILRGKNKVTYTPHVDTGDYVIIINASKIELTGNKENDKIYYRHSNHPGGLKSITAGELKRTNPERLLETSIKGMLPSSRLGEKQGKKLFVYGGAEHPHAAQQPENYELRG
>NZ_CP016072.1|WP_063284678.1|742150_742954_+|tRNA-pseudouridine(38-40)-synthase-TruA
MQRVLVKISYNGAQFLGFQIQNQGRTIQGYFEKILKRMHQQHVRIHPSSRTDRGVHAKAQYFHFDTHLNITPERWQHAMNSALPDDIYVHDVSFIDQDFHCRYDCVGKRYRYSIYQAEHRNPFWSQLKTFEPKALDIEAMQRAAQYFVGTHNFTTFCSQKTEVESKERTIYESRIEQTADGIDFVITGSGFLYNMVRVIMAYLLEVGKGKRSADDVPNLLAQQDRNLVPHTAPAEGLYLEKIYLAPEQLTADFGDHIQIHSKKSTQI
>NZ_CP016072.1|WP_014613240.1|741331_742135_+|energy-coupling-factor-transporter-transmembrane-protein-EcfT
MKDKLIIGRFLPLDTVIHRLDPRAKLIFVFLFIIIIFFSHAPLSYLWLALILLTVTKLARIPLWFLIKGLLPVFFFLILTFMMHLFLTKGGTRLIEWGFITIDSNGIREGILIMLRLGFIMIVSTILTLTTSPLNLTDAFDRLFKPLKYIKIPVAALSMMMSIALRFIPTLMEELDKIILSQKSRGSDISSGSLAARIKAFIPLLIPLFISAFQRAEELAIAMEVRGYDANAERTSYRILKWQLKDTLLIISLVPIAAVSLWLGHTF
>NZ_CP016072.1|WP_014613239.1|740475_741342_+|energy-coupling-factor-transporter-ATPase
MIKFEEVSYTYQKNTPYEYQALNQISTEFLPGRYYAIIGKTGSGKSTLIQHFNGLVKPTRGKVQVLDVTVNRKTKDKHLKSIRQRIGMVFQFPESQLFEETVEKEVLFGPRNYGLDIEEARDKAMTLLGELGFDAEKVMQQSPFLLSGGQMRKIALAAILAMDPDILILDEPTAGLDPRSKAQVMALFKKLQLEEGKTIILVTHDMNDVAEFADEIKIMQGGTLIESTTPYDFFQRPDDVNALHLCLPDIVRLQRDVEAKLGVQFDKLALTEASFVAIYEEWRQRHEG
>NZ_CP016072.1|WP_037542436.1|739669_740479_+|energy-coupling-factor-transporter-ATPase
MEHEHLIEFDHVSFQYHEDQPKVLNDIQFKVNKGEWLSIVGHNGSGKSTLAKLLTGIEQNYQGDIRINGSSIKGVDRSAFEHHIGIVFQNPENQFVGSTVSYDVAFGLENKGLSYNEMHDIVPLVLKDVDMYDKQHHEPTALSGGQKQRVAIASVLALEPQLIILDEATAMLDPEGKRDILAMVKALNRHKGVTVIAITHDLSEVVSSDRVIVMNRGEVFLEGTVEKIFEKGEALVEIGLDLPFEMRMAQKLNLSQSFITYEGLLERLT
>NZ_CP016072.1|WP_014613237.1|738821_739190_+|50S-ribosomal-protein-L17
MGYRKLGRTSDQRKAMLRDLATSLIVSERIETTEARAKELRSVVEKLITLGKKGDLASRRNAAKTLRNVQILNEDETTQTALQKLFGEIAERYQERQGGYTRILKVAPRQGDGALKVIIELV
>NZ_CP016072.1|WP_014613236.1|737860_738805_+|DNA-directed-RNA-polymerase-subunit-alpha
MIEIEKPRIETIEVSDDAKFGKFVVEPLERGYGTTLGNSLRRILLSSLPGAAVKYIEIEGVLHEFSAIDHVVEDVSTIVMNIKKLALKIYSEEDKTLEIDIKEEGEVTAKDIMHDSDVEILNPDLKIATVSKGGHLKLRLVANTGRGYALADQNNSSDLPIGVIPVDSLYSPVERVNYTVENTRVGQSSDFDKLTLDVWTDGSITPQESVSLAAKIMTEHLNIFVGLTDEAQNAEIMIEKEEDQKEKVLEMSIEELDLSVRSYNCLKRAGINSVQELADKSEADMMKVRNLGRKSLEEVKYKLEDLGLGLRKED
>NZ_CP016072.1|WP_014613235.1|737395_737785_+|30S-ribosomal-protein-S11
MARKQVSRKRRVKKNIENGVAHIRSTFNNTIVTITDEFGNALSWSSAGALGFKGSKKSTPFAAQMASETASKAAMEHGLKSVEVTVKGPGPGRESAIRALQSAGLEVTAIKDVTPVPHNGCRPPKRRRV
>NZ_CP016072.1|WP_110148278.1|746457_746547_+|30S-ribosomal-protein-S9
MQLYETLKFFERKKPGLKKARRSPQFSKR
>NZ_CP016072.1|WP_014613248.1|748700_749246_-|cysteine-hydrolase
MTKYGLLIIDVQNDYFSGGKMVLHEPEKALHHIQQLEHNFKSKNLPIIYIQHINTQPNPAFFEKGTDGVALHSELSLQADSVIIEKHFPNSFFQTKLQATLDQLEVDTLVITGMMTHMCVDSTTRAAAELGYNPVLIHDATATRNLTFNENNVQANDVQNAFISSLSNFSTVMSTDDWIKA
>NZ_CP016072.1|WP_037542450.1|749427_750300_+|sce7726-family-protein
MATINILNKVFSKNVLRELIREGESDLLNKAYYQIFNDDAPHLNNHKKIEQLYNVLKKNYRNEYFFKNTMLNKLLLGKHALNTTVAMTELPIKRSKADFILINGKAIVYEIKTKLDALQRLDNQIMDYYTVFDHVEIIVDEAHLNKVKSRYLNTSVGISVLSKKNTISQKQRPSPNRQWLNHIAIYKVLRKEERKSIIKMFYGYSPEFDQFSEYQALLKMFQKIEIEPLYEQFIQLLKQRDTVKAYQNDFKNVPYELRFITYFSQFRKNDYHNLNIALGGGKDVLSISKR
>NZ_CP016072.1|WP_037542453.1|750274_751195_+|sce7725-family-protein
MYYPYLRGKQYELIAVRELIEKKLISKNVVPIIEPIKETATLRSTLETGIENNHQIYTIINPQVGEYSLYEENHPITGEVLDLNYDAILMNNAKDVSKNAHLLSKSEKFIAIYSSRDDLKNFAMLKEKSLVPSINFVKDGHRFSRFFRQEHQEIGLIRDAFDKQKRNVDYADESDKFFSDDHLYYRDEGYVAFSDYSIVGDHYLDNGFAPVAVAIHIVYFDSNDVLRIKHFVSESNDDNSDPAGKFREALEKLINWAETTTTLNHSDALKQFQVLWNEKRYPGLGFTKKLSIMHHLEIMDNYLSRR
>NZ_CP016072.1|WP_015729503.1|751560_752280_+|RES-family-NAD+-phosphorylase
MKEEFVTDNHKLIVKDNDWDKFANAIKYQNRFHTQNINLQLLNHFLKFTESIIKPEDFLLYRCRISNSEPIDISGMYAPPKEKASAGRLNSQWISHLYLGDDELACIQEVRAGFHDNVYIGEFKLKEPIKVVDLRHFEDKTLDFRDELQLEYYLNRDTFIRISNELAKPANNDDKYIHYLPLQYMSDFIKSSDEKFQGILYKSVMNENATNLLLFNPNLVECERVKKKTIKYIDYQYSR
>NZ_CP016072.1|WP_020219634.1|752745_753180_+|hypothetical-protein
MNKSIIIYLISYALIILGNSATFVAVYWIIGEKSTYSTLALIVSIVFFIRFLTSRVITNKIDLFHHVKLNSNLFITRICILIIALFSLKYFDDVWTVCLLTIVLNCLDVVSGSITPKFIKSFGEQQIVTLNSYLSIVEKLLYVL
>NZ_CP016072.1|WP_015729500.1|753368_753905_+|hypothetical-protein
MIAIAANIMITPYTTLIIPYIRENISATPDIFTATEILMMVGGVLIGILTSKYLKLDSYQSDKLFVVSAISQGILIILLSYNSSMILYFIVMFLLGACITAFNIPFSIILQSKVPIKAIGKAKSHIISISTIFSAILYVLSSFLVRYMDISHVYLIFPILGLLTLAVYKFRGKIKFGM
>NZ_CP016072.1|WP_037542455.1|754183_757018_+|DEAD/DEAH-box-helicase-family-protein
MIKKESVHILKDGREIKVLDVIQDFKDEKQYALILYDNHQYIYEMTALKQSVAPKNNTTTNKSTDEKIALYRAYFRGNDEIVATSFRTKVGKMVYYPWCLIRKQAPCPKVKKPQFQCSKCTVHRFQKMTDDVIFNHLKGVNRYGKEVMYGLYPIVDQNQTFLLVFDFDKADWRQEVKVLAKVAQSLKLDYLIEISQSGNGAHVWLFFEDKILARKARALGDIMLTQAMKQYPELSFEAFDRIFPNQDDVSNGGFGNLIALPLQGKRVLNGFSRFVDDDLVLIDDIWSTLEQTTKISEEEVDGIINKYTHNLPSNYYKAEKKVQQDDLTLFEYASASSDKKIDVTLGSEITIPIKELTRDETVRLRFLASFYNKAYFKALNQRLNTRNIPKMISLSEVEAGEIKLPRGLYQNVLKLYPKANIIHQQVEGKTIHATFQAELYEAQQQAYDALTQHNDGLLCAGTGFGKTVIASKMIVEKGVSTLIIVHSKSLAAQWKSQIETFVDLEDDPFPEYTEKGRLKKKDKIGMIQGGKSKRSKNIDIALFQTLTTMDNLEDVFNDYGMVIVDEAHHVAAKTFEDVMAKVNSRYVYGLTATPKREDGLENIIYFRIGPIRHFAKKEVPHHIAQKLYLRFTASGEHLSNIQDQSIHDNHELIVADAQRNEVIVQDIVDCIKEKRHIIVLSRFINHIQALKRQFEKLNQETNVYILNSHMKTSQLKEEMTALKEEGKPFVLFTTGSYAGEGFDLPALDTLMLVMPIKAKGSIQQYLGRLLRNLNDKEELRVYDYVDYAIPMFYKMYMKRLRTYKTLGYILEENSGSELYQSNMIEGDYMSLLMKDLKAANWTVFMMAYLSKDMIHWLVSLDDLHSTDKIIVMSEKTERIMAKNLTPLYESGFQIQVVPKVSQNFIIIDNRLVWMLSSTREDDVKHQMSLRLFSESIAKKLVNKT
>NZ_CP016072.1|WP_037542457.1|757174_757927_+|DeoR/GlpR-transcriptional-regulator
MNKYERLDEIARRVNEKGTIRITDIVEDLNVSDMTVRRDLIELEEQGILTKIHGGARSNKASQYKEMSHREKHTRKSEEKLEIAKKAAKLIEDGNVIFLGPGTTVEMLAKEIDNQRLSIVTNCLPVFQILEHKRSEQFSVYLIGGSKRQLTESFVGEMANTLLEKMRFSKIFFSANGIKGNDVMTSSYEEAYTQNLAIKHSNEKYILADDSKIGKEDFVSFCELKDLTAIVTNTLNNDQLQYLQKFIEII
>NZ_CP016072.1|WP_014613253.1|758131_758560_+|galactose-6-phosphate-isomerase-subunit-LacA
MKVIIGADQYGLSLKEHIKTFLLQHQYEVLDVTSEELEDFVDVTVAVAKEVQQNDENLGVVIDAYGVGSFMVATKIKGMIAAEVSDERSAYMTRSHNNSKMITMGAALVGQTLAENIVKGFIEGHYDGGRHQIRVDMLNKMG

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Crispr_ID: NZ_CP016072_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP016072_2

1330609-1330758

Unclear

Consensus_repeat	Method
AATGAAGAAGCGTTAAAACAAGCACAACCTAAAACAACAACACAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP016072_2

>merge|NZ_CP016072|2|1330609-1330758|CRISPRCasFinder
AATGAAGAAGCGTTAAAACAAGCACAACCTAAAACAACAACACAATCAACAAAAGCAACGAGCCGTACACACAATGAAAACATTTTTTCACAATACGATATGATCAATGAAGAAGCGTTAAAACAAGCACAACCTAAAACAGCAACACAA

>NZ_CP016072|2|2|1330609-1330758|CRISPRCasFinder
AATGAAGAAGCGTTAAAACAAGCACAACCTAAAACAACAACACAA	TCAACAAAAGCAACGAGCCGTACACACAATGAAAACATTTTTTCACAATACGATATGATC
AATGAAGAAGCGTTAAAACAAGCACAACCTAAAACAGCAACACAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP016072.1\|WP_014613779.1\|1327643_1328396_+\|16S-rRNA-(uracil(1498)-N(3))-methyltransferase	unknown	unknown	gnl\|CDD\|367950
NZ_CP016072.1\|WP_065354198.1\|1333851_1334796_+\|PhoH-family-protein	unknown	unknown	gnl\|CDD\|224616
NZ_CP016072.1\|WP_015729248.1\|1331208_1331859_+\|serine-protease	unknown	unknown	gnl\|CDD\|223961
NZ_CP016072.1\|WP_037542851.1\|1321922_1322912_+\|heat-inducible-transcription-repressor-HrcA	unknown	unknown	gnl\|CDD\|273017
NZ_CP016072.1\|WP_014613777.1\|1325572_1326706_+\|molecular-chaperone-DnaJ	unknown	unknown	gnl\|CDD\|237656
NZ_CP016072.1\|WP_014613789.1\|1336027_1336924_+\|GTPase-Era	unknown	unknown	gnl\|CDD\|234624
NZ_CP016072.1\|WP_014613783.1\|1331877_1332873_+\|flotillin-like-protein-FloA	unknown	unknown	gnl\|CDD\|237462
NZ_CP016072.1\|WP_015729246.1\|1336948_1337719_+\|DNA-repair-protein-RecO	unknown	unknown	gnl\|CDD\|273175
NZ_CP016072.1\|WP_014613787.1\|1335260_1335608_+\|diacylglycerol-kinase-family-protein	unknown	unknown	gnl\|CDD\|260134
NZ_CP016072.1\|WP_015729250.1\|1328400_1329750_+\|tRNA-(N(6)-L-threonylcarbamoyladenosine(37)-C(2))--methylthiotransferase-MtaB	unknown	unknown	gnl\|CDD\|223694
NZ_CP016072.1\|WP_002471046.1\|1329958_1330135_+\|30S-ribosomal-protein-S21	unknown	unknown	gnl\|CDD\|234707
NZ_CP016072.1\|WP_014613771.1\|1318237_1318486_-\|30S-ribosomal-protein-S20	unknown	unknown	gnl\|CDD\|178943
NZ_CP016072.1\|WP_014613778.1\|1326709_1327642_+\|50S-ribosomal-protein-L11-methyltransferase	unknown	unknown	gnl\|CDD\|283886
NZ_CP016072.1\|WP_014613786.1\|1334799_1335261_+\|rRNA-maturation-RNase-YbeY	unknown	unknown	gnl\|CDD\|234575
NZ_CP016072.1\|WP_015729245.1\|1337934_1339329_-\|glycine--tRNA-ligase	unknown	unknown	gnl\|CDD\|235240
NZ_CP016072.1\|WP_014613788.1\|1335623_1336031_+\|cytidine-deaminase	unknown	unknown	gnl\|CDD\|273572
NZ_CP016072.1\|WP_082239520.1\|1322926_1323568_+\|nucleotide-exchange-factor-GrpE	unknown	unknown	gnl\|CDD\|237622
NZ_CP016072.1\|WP_014613773.1\|1320698_1321820_+\|oxygen-independent-coproporphyrinogen-III-oxidase	unknown	unknown	gnl\|CDD\|236309
NZ_CP016072.1\|WP_065354197.1\|1332886_1333501_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|129130
NZ_CP016072.1\|WP_065354196.1\|1317089_1318064_+\|DNA-polymerase-III-subunit-delta	unknown	unknown	gnl\|CDD\|235511

Protein	Function_ID	Function_description	E-value
NZ_CP016072.1\|WP_014613779.1\|1327643_1328396_+\|16S-rRNA-(uracil(1498)-N(3))-methyltransferase	gnl\|CDD\|367950	pfam04452, Methyltrans_RNA, RNA methyltransferase. RNA methyltransferases modify nucleotides during ribosomal RNA maturation in a site-specific manner. The Escherichia coli member is specific for U1498 methylation.	8.00869e-83
NZ_CP016072.1\|WP_065354198.1\|1333851_1334796_+\|PhoH-family-protein	gnl\|CDD\|224616	COG1702, PhoH, Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms].	6.03205e-149
NZ_CP016072.1\|WP_015729248.1\|1331208_1331859_+\|serine-protease	gnl\|CDD\|223961	COG1030, NfeD, Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones].	1.82112e-38
NZ_CP016072.1\|WP_037542851.1\|1321922_1322912_+\|heat-inducible-transcription-repressor-HrcA	gnl\|CDD\|273017	TIGR00331, Heat-inducible_transcription_repressor_HrcA, heat shock gene repressor HrcA. HrcA represses the class I heat shock operons groE and dnaK; overproduction prevents induction of these operons by heat shock while deletion allows constitutive expression even at low temperatures. In Bacillus subtilis, hrcA is the first gene of the dnaK operon and so is itself a heat shock gene. [Regulatory functions, DNA interactions].	1.81443e-69
NZ_CP016072.1\|WP_014613777.1\|1325572_1326706_+\|molecular-chaperone-DnaJ	gnl\|CDD\|237656	PRK14280, PRK14280, molecular chaperone DnaJ.	0
NZ_CP016072.1\|WP_014613789.1\|1336027_1336924_+\|GTPase-Era	gnl\|CDD\|234624	PRK00089, era, GTPase Era; Reviewed.	7.41537e-175
NZ_CP016072.1\|WP_014613783.1\|1331877_1332873_+\|flotillin-like-protein-FloA	gnl\|CDD\|237462	PRK13665, PRK13665, hypothetical protein; Provisional.	0
NZ_CP016072.1\|WP_015729246.1\|1336948_1337719_+\|DNA-repair-protein-RecO	gnl\|CDD\|273175	TIGR00613, DNA_repair_protein_RecO, DNA repair protein RecO. All proteins in this family for which functions are known are DNA binding proteins that are involved in the initiation of recombination or recombinational repair. [DNA metabolism, DNA replication, recombination, and repair].	6.51168e-71
NZ_CP016072.1\|WP_014613787.1\|1335260_1335608_+\|diacylglycerol-kinase-family-protein	gnl\|CDD\|260134	cd14265, UDPK_IM_like, Integral membrane undecaprenol kinase and similar enzymes. This mostly bacterial family of homo-trimeric integral membrane enzymes, the products of the dgkA gene, catalyzes the ATP-dependent phosphorylation of undecaprenol to undecaprenyl phosphate. C55-isoprenyl (undecaprenyl) pyroposphate acts as a scaffold for the assembly of peptidoglycan components; undecaprenol kinase (UDPK) is involved in recycling undecaprenyl units for re-use in the peptidoglycan biosynthesis. UDPK does not participate in the de-novo biosynthesis of undecaprenyl phosphate. Gram-positive bacteria have a large pool of free undecaprenol, in contrast to gram-negative bacteria. UDPK may also play a role in a stress-induced pathway that affects the function of ribosomes. In Streptococcus mutans, UDPK has been shown to be required for biofilm formation, such as in the case of smooth surface dental caries. Members of the UDPK family have low activity as diacylglycerol kinases (DAGK), and many of them are annotated as DAGKs.	5.91946e-37
NZ_CP016072.1\|WP_015729250.1\|1328400_1329750_+\|tRNA-(N(6)-L-threonylcarbamoyladenosine(37)-C(2))--methylthiotransferase-MtaB	gnl\|CDD\|223694	COG0621, MiaB, 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis].	0
NZ_CP016072.1\|WP_002471046.1\|1329958_1330135_+\|30S-ribosomal-protein-S21	gnl\|CDD\|234707	PRK00270, rpsU, 30S ribosomal protein S21; Reviewed.	1.69119e-10
NZ_CP016072.1\|WP_014613771.1\|1318237_1318486_-\|30S-ribosomal-protein-S20	gnl\|CDD\|178943	PRK00239, rpsT, 30S ribosomal protein S20; Reviewed.	2.57018e-15
NZ_CP016072.1\|WP_014613778.1\|1326709_1327642_+\|50S-ribosomal-protein-L11-methyltransferase	gnl\|CDD\|283886	pfam06325, PrmA, Ribosomal protein L11 methyltransferase (PrmA). This family consists of several Ribosomal protein L11 methyltransferase (EC:2.1.1.-) sequences.	5.55292e-116
NZ_CP016072.1\|WP_014613786.1\|1334799_1335261_+\|rRNA-maturation-RNase-YbeY	gnl\|CDD\|234575	PRK00016, PRK00016, metal-binding heat shock protein; Provisional.	1.18305e-63
NZ_CP016072.1\|WP_015729245.1\|1337934_1339329_-\|glycine--tRNA-ligase	gnl\|CDD\|235240	PRK04173, PRK04173, glycyl-tRNA synthetase; Provisional.	0
NZ_CP016072.1\|WP_014613788.1\|1335623_1336031_+\|cytidine-deaminase	gnl\|CDD\|273572	TIGR01354, Cytidine_deaminase, cytidine deaminase, homotetrameric. This small, homotetrameric zinc metalloprotein is found in humans and most bacteria. A related, homodimeric form with a much larger subunit is found in E. coli and in Arabidopsis. Both types may act on deoxycytidine as well as cytidine. [Purines, pyrimidines, nucleosides, and nucleotides, Salvage of nucleosides and nucleotides].	7.69191e-60
NZ_CP016072.1\|WP_082239520.1\|1322926_1323568_+\|nucleotide-exchange-factor-GrpE	gnl\|CDD\|237622	PRK14140, PRK14140, heat shock protein GrpE; Provisional.	4.34597e-70
NZ_CP016072.1\|WP_014613773.1\|1320698_1321820_+\|oxygen-independent-coproporphyrinogen-III-oxidase	gnl\|CDD\|236309	PRK08599, PRK08599, oxygen-independent coproporphyrinogen III oxidase.	0
NZ_CP016072.1\|WP_065354197.1\|1332886_1333501_+\|hypothetical-protein	gnl\|CDD\|129130	TIGR00019, Peptide_chain_release_factor_1, peptide chain release factor 1. This model describes peptide chain release factor 1 (PrfA, RF-1), and excludes the related peptide chain release factor 2 (PrfB, RF-2). RF-1 helps recognize and terminate translation at UAA and UAG stop codons. The mitochondrial release factors are prfA-like, although not included above the trusted cutoff for this model. RF-1 does not have a translational frameshift. [Protein synthesis, Translation factors].	0.00466262
NZ_CP016072.1\|WP_065354196.1\|1317089_1318064_+\|DNA-polymerase-III-subunit-delta	gnl\|CDD\|235511	PRK05574, holA, DNA polymerase III subunit delta; Reviewed.	2.10939e-91

>NZ_CP016072.1|WP_002471046.1|1329958_1330135_+|30S-ribosomal-protein-S21
MSKTVVRKNESLEDALRRFKRSVSKSGTIQEVRKREFYEKPSVKRKKKSEAARKRKFR
>NZ_CP016072.1|WP_015729250.1|1328400_1329750_+|tRNA-(N(6)-L-threonylcarbamoyladenosine(37)-C(2))--methylthiotransferase-MtaB
MSTVAFHTLGCKVNHYETEAIWQLFKDAEYNRVDFEQNADVFVINTCTVTNTGDKKSRQIIRRAIRQNPDAVICVTGCYAQTSSAEIMEIPGVDIVVGTQDRHKLLDYIDTYQDERQPINGVSNIMKNRTYEELDVPYFTDRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDPKKVIEQATQLVNSGYKEIVLTGIHTGGYGQDLKDYNLAQLLRDLETVDGLERIRISSIEASQLTDEVIEVLQQSQKVVRHLHIPLQSGSDSVLKRMRRKYSMAHFSERIQKLHAALPGLAVTSDVIVGFPGETEAEFQETYDFIVNHHFSELHVFPYSPRIGTPAARMDDQIDEEIKNERVHKLIELSNQLAKTYASKFENDVLEVIPEEKGSQDGLLVGYADNYMKVEFVGDESLIGQICKVKVTQAGYPINQGTLLRVVEHATNASENEKVLN
>NZ_CP016072.1|WP_014613779.1|1327643_1328396_+|16S-rRNA-(uracil(1498)-N(3))-methyltransferase
MQRYFLNENAEQHQRFFITNNNDIHHIKSVMRQNVGDALIINFLNAVTYRCKIIDIEAQRITIETVERIEVETELPLNITICSGLIKGDKYEWLLQKATELGATSFIITQMDRSVVKLNQQKAAKKVERWQKIVKEAAEQSYRQAVPQVKFVSNLHEIYDMIGQYDCVLMAYEAAAKQNERALFKQQLRQFKHGSHVLLLFGPEGGFSENEIALFEDVAQSVGLGPRILRAETAPLYALSAISYEIELMG
>NZ_CP016072.1|WP_014613778.1|1326709_1327642_+|50S-ribosomal-protein-L11-methyltransferase
MNWIELSVTVNQAAESIATEILQEAGSNGVAIEDSSEISKIREDRFGEIFELNPADYPEQHMIVKAYFNDLQYDETLKNNIFSKLQASPLIDPDVLMIEQKFVQESDWENEWKNYFHPFQASERFFIVPSWESVERDDTQLYIELDPGMAFGTGDHPTTSMCLKALEQIVKPEHRVIDVGTGSGILSVASYLLGAQSIKATDLDEMAVQVAKENFEKNHCLDAIETATGNLLTEEKGQYDVVIANILAHIIEKMVQDAYDHLNPEGYFITSGIIEEKRESVQTLMEETGFTIKEVKNDEGWICIIGQKVN
>NZ_CP016072.1|WP_014613777.1|1325572_1326706_+|molecular-chaperone-DnaJ
MAKRDYYEVLGVSKSASKDEIKKAYRKLSKKYHPDINKEEGSDEKFKEISEAYEVLSDENKRAQYDQFGHSGPQGGFGQGFGGQDFSGFGGGGFEDIFSQFFGGAQRQRDPNAPRRGDDLQYTMTVTFDEAVFGTKKEISIRKEVTCHTCDGEGAKPGTKKKTCSYCHGAGHVSVEQNTILGRVRTEKVCPECNGTGEEFEEPCPTCHGKGTELKNVKLEVTVPEGVDNDQQIRLAGQGGPGENGGPAGDLFVIFRVQPSDKFTREGDDILYNHNISFAQAALGDEVKIPTLKGHVMLTVPEGTQTGKQFRLKGKGIKNVHGYGYGDLFVNIRVQTPTGLNERQRELLKEFAEMSGETVNEQPSNFKDKARRFFKGE
>NZ_CP016072.1|WP_082239520.1|1322926_1323568_+|nucleotide-exchange-factor-GrpE
MFKRNGGLKMSEEKDVRKDEEIKETESQETTETSELEVENEQVAVNQDSENENDASNDETQDLKDEEIASLKAEVDAKEEQYLRLYAEFENYKRRIQNEAQTQKRYQAQKVLTDVLPALDNFERALKIEGDDESFNALKKGVEMVYESLLKVLEDNGLEKIKTEGEQFDPNFHQAVMQDENPDFESGQITEELQAGYQLKDRVLRASMVKVNQ
>NZ_CP016072.1|WP_037542851.1|1321922_1322912_+|heat-inducible-transcription-repressor-HrcA
MITPRQLKILTAIVEDYVDLGQPIGSNTLIQRHNVDVSPATIRNDMKTLEENSLITKTHFSSGRIPSEAGFRLYANHLLEQPYNFEMQGSLDIHQMLVNHHYDLSSTLDTFAKVFSNQAHYTTLVIGPDHSKASILDVHLMKLNPHHLIVVMIDETGQVKHLHVTSDQPYADHSIIKVSNYLSANVRQFFDGNDVQSIEVYRMLGFNAEEADLIVRILHMLHQYRNNQSTRVYLGGKHQLIEGLNESTVASIQPILKYIESDRIADVIHHMSDQLINVRIGTDIEQNLHGIAILSRSYQIDKDLTGHIAVIGPTAMHYHNVIQLLSRIS
>NZ_CP016072.1|WP_014613773.1|1320698_1321820_+|oxygen-independent-coproporphyrinogen-III-oxidase
MVAKSAYIHIPFCVKICTYCDFNKYFIQNQPVDLYLACLVEEMKQSKASQLETLFVGGGTPTALSESQLEYLLQAIQDQFDIKGEYTFEANPDELTEEKVALLKRYGVNRLSLGVQTFDDTLLQTLGRSHHKADIYQAIDNARRQGISSISLDLMYHLPGQSMQQFQESLEEALRLDIDHLSSYGLILEPQTQFYNQYRKGKLKMPNEDVGAEMYQYLMNRMKNSPLQQYEISNFAKKGHESIHNQVYWKNESYYGFGAGASGYIGGVRYTNVNPVNHYIKKIQQHEFPRLTETTPTVKEQIEEEMFLGLRMNTGVDKIKFQKKYHQTIEAIYAKEIISLEGQNLIDQTDTHIALTDKGRIVGNTVFEAFIQV
>NZ_CP016072.1|WP_014613771.1|1318237_1318486_-|30S-ribosomal-protein-S20
MPNIKSAIKRVRTTHTAESKNISQKNDMRSAVKSAKKAIETNADNKQELVSKAVKRIDKAAQKNLIHSNKADRMKSKLMSAK
>NZ_CP016072.1|WP_065354196.1|1317089_1318064_+|DNA-polymerase-III-subunit-delta
MSNIHVIHGEVPELIDRETEQLTQKYLGNEPKDDFNYVKYNLYETTLNTIIEEAMTLPFFSDKKIIVVQNSYIFTGEKPPKEAQTNADSLLEFIEKYDEASLIIFQVQAVKLDERKKVVKTLRKVANIKKIEQMTEQEMQKWIHQYLNQSYKEIKQDALEALIQLTGIHYRMIKQELDKLLLFVGDRPTINKEDVQTIVNRSLEQNVFLLTDYIQKGQKAQAISLVKDLIQLKEEPIKLLALITSNYRLYYQSKILNQKGYSGQQIAKTVGVHPYRVKLALNQARKYDLDTLLTIMDVCTETDYQLKSSYMDKVLILELFIMKL
>NZ_CP016072.1|WP_015729248.1|1331208_1331859_+|serine-protease
MLFFNQLGEILTSEMLSLILICIVFLGCLYQLYSRRINFSGIIALFALLFLFLGFIIQGSFTLITLMLFVIGVLLLLVELFVFGAVLGIIGITLIIISFVTLGDNLSMMLFNVVFASILTLIEWVVLVKFFKKSIAIFDKVVLKDSTSKESGYTSHNDRSHLVGEIAVSYTDLRPSGIIILNNERIDAVSEGSFISKDMKVAIIEVEGTRVVVREI
>NZ_CP016072.1|WP_014613783.1|1331877_1332873_+|flotillin-like-protein-FloA
MLTSGLITFIVIAVLIIVALLILFSFVPVGLWISALAAGVKVGIGTLVGMRLRRVSPRKVIGPLIKAHKAGLHLTTNQLESHYLAGGNVDRVVDANIAAQRADINLPFERGAAIDLAGRDVLEAVQMSVNPKVIETPFIAGVAMNGIEVKAKARITVRANISRLVGGAGEDTIIARVGEGIVSTIGSSEHHTQVLENPDNISKTVLSKGLDSGTAFEILSIDIADVDISKNIGADLQTEQAIADKNIAQAKAEERRAMAVAQEQEMKARVQEMHAKVVEAEAQVPLALAEALRSGNIGVKDYYNLKNIEADTGMREAINKSTQNNNSTPEQ
>NZ_CP016072.1|WP_065354197.1|1332886_1333501_+|hypothetical-protein
MSIGTIIFIITIAISLFSAVSDKSHEKRQKQNKPHNNKKETAPQKSGGFLENVQQKLEEFERELSDFDEPNEPSQQQPAQQLKRKKTVRPEPTQFEKQAEATKPKTQENQKQAIEMQQMLDQHMRELDQQLDKERQKRIAHIERRAKNIIQDNYLSHRTKQFKLKQLLEENNTTAIQQGDLTFSNNEVVNGLIWSEVLNRPKQL
>NZ_CP016072.1|WP_065354198.1|1333851_1334796_+|PhoH-family-protein
MPELIQIDDINQAQALLGNNDEHIQLIEEAFDVVIHARGQEVAVKGEKVSAVTEAESVLINLLKVIEQGASITVKDVQAAIKMAKNGQIEHLIDLYEEEITKDAFGKTIRAKTMGQRMYIHAMKNNDLVFGIGPAGTGKTFLAVVFAAKALRAGQVKRLVLTRPAVEAGESLGFLPGDLKEKVDPYLRPLYDGLNTVLGTEQTARLIERGVIEIAPLAYMRGRTLEDAFVILDEAQNTTHAQMKMFLTRLGFGSKMVVTGDKTQIDLPRGVKSGLIEAEQRLKNIKELAIQHLDQADVVRHPLVGQIISRYEED
>NZ_CP016072.1|WP_014613786.1|1334799_1335261_+|rRNA-maturation-RNase-YbeY
MFTIDFSDHTDQVKDDWYTQIRDVLEFAKNEEGIDEDAELSVTFVDKAEIQEINRDYRQKDKVTDVISFAFEEEEDIFEGMDVPRVLGDIIICTDVAAEQAEQYGHSFERELGFLALHGFLHLLGYDHMTEEDEKVMFGRQKDILNQFGLTRD
>NZ_CP016072.1|WP_014613787.1|1335260_1335608_+|diacylglycerol-kinase-family-protein
MFNRFKYAFQGCRTILIKDRNFLYHLIIAFLILILGWALPLSTIEWLFIILAIFLVIITEAINTAIEYVVDLATQDFHIFAKHAKDVAAFSVLLASLFAFIVGCIIFIPKFVSFF
>NZ_CP016072.1|WP_014613788.1|1335623_1336031_+|cytidine-deaminase
MGYTDKHYTEVRKAQQKAYAPYSQFKVGAYLVTKDGQTFHGANVENAAYPSCICAERSALVAAISQGYKPGDFESITITVDSPELASPCGPCRQVIHELCDDDMPVYMTNQTGEMREATVAELLPYGFSGKDLNL
>NZ_CP016072.1|WP_014613789.1|1336027_1336924_+|GTPase-Era
MSEYKSGFVTIIGRPNVGKSTFVNRVIGHKIAIMSDKAQTTRNKIQGVMTQQDAQIVFLDTPGIHKPKHKLGDYMMKVAKNTLSEIDAVMFMVNVNEEIGRGDEYIMEMLKTVKTPVFLVLNKIDLVHPDALMPRIEQYQRYMDFAEIIPISALEGHNVDHFINVLKSYLPEGPQYYPDGQISDHPEQFVVSELIREKILQTTSEEIPHAIGVNVERMTQESEDRVHIEAVIYVERDSQKGIVIGKGGKKLKEVGKRARLDIEHLLGSKVYLDLWVKVQKDWRNKSSFIKQMGYVEDE
>NZ_CP016072.1|WP_015729246.1|1336948_1337719_+|DNA-repair-protein-RecO
MLVKQKGIIIKAVDYGESDKIITILNEHGAKVPLMVRRAKKIKSGLQATTQIFVQGLFIYNQWKGMGTLTSVDVLNLNYELRQDIYAHSYASLCLETIDRAMETDEINPTMYRLLDFAFDRFQQGVSPQLIANIVMLKCMPRFGFDVDLSKCVMTGETNPAKLTHFSFKFDGIIATEVTHRDPHALPLSNKTIYLTYVLKDLPLDKINALRIQDAIVEEMSKFILLLYKEYAGMYFKSQRLINQLNRLKVTDSTDD
>NZ_CP016072.1|WP_015729245.1|1337934_1339329_-|glycine--tRNA-ligase
MEKKNMDTIVQLAKHRGFVFPGSEIYGGLANTWDYGPLGVELKNNVKKAWWKKFITQSPYNVGLDAAILMNPKTWEASGHLGNFNDPMIDNKDSKIRYRADKLIEDYMANVKGDENFIADGLSFDEMKRIIDEEGITCPVSGTANWTDIRQFNLMFKTFQGVTEDSTNEIFLRPETAQGIFVNYKNVQRSMRKKLPFGIGQIGKSFRNEITPGNFIFRTREFEQMELEFFCKPGTEIEWQNYWKDFAANWLESLGLAKENTRLRDHDEDELSHYSNATTDIEYRFPFGWGELWGIASRTDFDLKKHSEHSGEDFSYHDPETNEKYIPYCIEPSLGADRVTLAFLCDAYDEEGVEGSKDARTVLHFHPAIAPYKAAVLPLSKKLSADAIKVYEQLSEDFVVDFDESQSIGKRYRRQDEIGTPYCITFDFDSLEDQQVTVRDRDTMEQVRMPISELNAFLAEKVKF

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Crispr_ID: NZ_CP016072_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP016072_3

1646960-1647050

TypeV-U3

Consensus_repeat	Method
ATGTTAATTCGTATAGAACTAAAAC	CRISPRCasFinder

1 spacers

c2c10_CAS-V-U3

The CRISPR arrays of NZ_CP016072_3

>merge|NZ_CP016072|3|1646960-1647050|CRISPRCasFinder
ATGTTAATTCGTATAGAACTAAAACTATAACCACGTATAAGCGTGTTAATCCTCAGTATCACCACTATGTTAATTCGTATAGAACTAAAAC

>NZ_CP016072|3|3|1646960-1647050|CRISPRCasFinder
ATGTTAATTCGTATAGAACTAAAAC	TATAACCACGTATAAGCGTGTTAATCCTCAGTATCACCACT
ATGTTAATTCGTATAGAACTAAAAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP016072.1\|WP_065354292.1\|1651924_1652410_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP016072.1\|WP_065354285.1\|1648809_1649202_-\|type-II-toxin-antitoxin-system-death-on-curing-family-toxin	unknown	unknown	gnl\|CDD\|226180
NZ_CP016072.1\|WP_065354291.1\|1651375_1651882_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP016072.1\|WP_065354279.1\|1645520_1645748_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP016072.1\|WP_065354289.1\|1650612_1650882_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP016072.1\|WP_065354280.1\|1645775_1646012_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP016072.1\|WP_065354281.1\|1646054_1646285_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP016072.1\|WP_065354294.1\|1652619_1653057_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP016072.1\|WP_065354275.1\|1644103_1644301_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP016072.1\|WP_158004118.1\|1643937_1644078_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP016072.1\|WP_065354288.1\|1649850_1650561_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP016072.1\|WP_065354287.1\|1649560_1649830_+\|YolD-like-family-protein	unknown	unknown	gnl\|CDD\|370161
NZ_CP016072.1\|WP_065354290.1\|1650902_1651343_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP016072.1\|WP_065354284.1\|1647279_1648632_-\|IS200/IS605-family-element-transposase-accessory-protein-TnpB	c2c10_CAS-V-U3	-	gnl\|CDD\|284650
NZ_CP016072.1\|WP_065354282.1\|1646318_1646552_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP016072.1\|WP_065354286.1\|1649198_1649447_-\|AbrB/MazE/SpoVT-family-DNA-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|274230
NZ_CP016072.1\|WP_065354283.1\|1646585_1646858_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP016072.1\|WP_065354278.1\|1645274_1645490_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP016072.1\|WP_065354276.1\|1644620_1644836_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP016072.1\|WP_065354277.1\|1644861_1645245_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP016072.1\|WP_065354286.1\|1649198_1649447_-\|AbrB/MazE/SpoVT-family-DNA-binding-domain-containing-protein	gnl\|CDD\|274230	TIGR02609, hypothetical_protein_XAC1195, putative addiction module antidote. Members of this protein family are putative addiction module antidote proteins that appear recurringly in two-gene operons with members of the Doc (death-on-curing) family TIGR01550. Members of this family contain a SpoVT/AbrB-like domain (pfam04014). Note that the gene pairs with a member of this family tend to be found on bacterial chromosomes, not on plasmids. [Mobile and extrachromosomal element functions, Other].	3.78014e-05
NZ_CP016072.1\|WP_065354287.1\|1649560_1649830_+\|YolD-like-family-protein	gnl\|CDD\|370161	pfam08863, YolD, YolD-like protein. Members of this family are functionally uncharacterized. However it has been predicted that these proteins are functionally equivalent to the UmuD subunit of polymerase V from gram-negative bacteria. This family has been shown to belong to the WYL-like superfamily.	3.90915e-19
NZ_CP016072.1\|WP_065354284.1\|1647279_1648632_-\|IS200/IS605-family-element-transposase-accessory-protein-TnpB	gnl\|CDD\|284650	pfam07282, OrfB_Zn_ribbon, Putative transposase DNA-binding domain. This putative domain is found at the C-terminus of a large number of transposase proteins. This domain contains four conserved cysteines suggestive of a zinc binding domain. Given the need for transposases to bind DNA as well as the large number of DNA-binding zinc fingers we hypothesize this domain is DNA-binding.	2.41879e-21
NZ_CP016072.1\|WP_065354285.1\|1648809_1649202_-\|type-II-toxin-antitoxin-system-death-on-curing-family-toxin	gnl\|CDD\|226180	COG3654, Doc, Prophage maintenance system killer protein [General function prediction only].	6.30113e-19

>NZ_CP016072.1|WP_065354283.1|1646585_1646858_-|hypothetical-protein
MARLTKEVQEVVCDICGNKADGEFYEVTYLNGEVYAEMYCPIDLCKHHMNLFVSQFSHYAYERHGGNSDTEELIIKMKNYDETHRYDYWK
>NZ_CP016072.1|WP_065354282.1|1646318_1646552_-|hypothetical-protein
MERKVIDPIELSNVLYTVKFIEMKHSGNREWNSECYWNSYNVLIKYLESQGFKERDEMEFMKETNISHVHAIVRIVY
>NZ_CP016072.1|WP_065354281.1|1646054_1646285_-|hypothetical-protein
MSKEKYVYSNCVGSVYLSSTAGLDRKRCGQCGDTDTYLGTVSSATELRKLLSSEGYNKEYIAEVVEEAIKYDGIMK
>NZ_CP016072.1|WP_065354280.1|1645775_1646012_-|hypothetical-protein
MIDKNKLIELDKRKGGLDEYVYVKHKKRGTEYRIEMFVKNTTNERYGEVLVIYSDENWDNTWARNIDEFCDGNFEIVK
>NZ_CP016072.1|WP_065354279.1|1645520_1645748_-|hypothetical-protein
MKKGINLETLKEVIERSKIDLSTHDVLSDIDVGEFEEIVNFAEENWEEVNFIVNVAVSYSLDRLAIRTNFAADIE
>NZ_CP016072.1|WP_065354278.1|1645274_1645490_-|hypothetical-protein
MNNERFYVIEISKDDFGHEYEALFEVCCSEENAKEVVDRLNDDNLLQDNDDYYIVVNSKDYYIKQDFYNSN
>NZ_CP016072.1|WP_065354277.1|1644861_1645245_-|hypothetical-protein
MSRHVVAFHSSNTYKSLGAILFDSYEDAVVKLEENGYQLSDVEDYYTNVADEKHAVIKQCVVNRRYLTSISKDNIECFAVYVRADEDDTERFLQAYISDEIGMKKLVNDLYSIDDSDNLIYSYEVIR
>NZ_CP016072.1|WP_065354276.1|1644620_1644836_-|hypothetical-protein
MRFYIIEYRVYDWGGEKDNTTDDSFFHSLDEAEYHLLKEGYKHYEDDQYIFGDDVDKVVATIKMLTPYVEL
>NZ_CP016072.1|WP_065354275.1|1644103_1644301_-|hypothetical-protein
MFIIEYTYYSPNDENHYLDDYFFTEKEKAVEYLKNEGFEWEQHNTYKKGEIFGVRANIILLAKFK
>NZ_CP016072.1|WP_158004118.1|1643937_1644078_-|hypothetical-protein
MNYEKMWKQLFNEVLERMGKYALTDRYRYQFFRMLHDRMEMIEKEE
>NZ_CP016072.1|WP_065354284.1|1647279_1648632_-|IS200/IS605-family-element-transposase-accessory-protein-TnpB
MEGEKEKYVVQSYGIKLIKPVGVDEGDWDFAGKVLRDLDYICFRVKNKAATRTYMNVIEKLEYENVHGKGTYDKYFKTRYGKTFSAYNMEQAKEDKELNNGSFLREHFDSMAREGEKVVKNNMKKILNGSASNITFKRNQPIPIRSRMIFITKESGKYYAELTLLSPEKAKELDRKGRKGTRIKFLLSSKGQEKVILDRLTSGEYDLRDSHIHVKKRGSKLNNYLIVAYRLKVKDDKDLIPNKILGVDLGISKAAYMAVSDSPVSEYINGGEIEQFRNGIEARRNSMRNQLKYHSSNRSGHGRSTKLIPLEKLRAKVNNFKELTNHRYAKFIVDTALKNRCTIIQMEDLSGISKTDTFLKRWSYSNLQEKIENKAKTKGIEVKKVSPKFTSQRCNKCGYIDKESRKSQEKFECVNCGHKTNADLNAARNLSMLDIEKVIKAQCKAQKIKH
>NZ_CP016072.1|WP_065354285.1|1648809_1649202_-|type-II-toxin-antitoxin-system-death-on-curing-family-toxin
MTKYLTEKDLILLNTHIIETYSPDEPIGVAQPTALNMTVESPKQEIFGEVLYPTLELKAANLFRNLVMKHVFQNANKRTAFAALQIFLDDNGKWINVDNNEATEFTVGVVTERLEEEEIARWIKKNWIDL
>NZ_CP016072.1|WP_065354286.1|1649198_1649447_-|AbrB/MazE/SpoVT-family-DNA-binding-domain-containing-protein
MAMVEKDLKRKVRKVGNSATLSIPNSLLERVGIKVGEDVSIKINENGNIELEKHVDREKEVIAKANKVFAQYNKTMKDLVQR
>NZ_CP016072.1|WP_065354287.1|1649560_1649830_+|YolD-like-family-protein
MIKQYEENQNKIDKPLLSEEQIQDVNQKLQYVVYNNIYITVEYWRNGYMHTIKGYIKTIDELNQEIQLTNERSTDSIWLPFDCLYDIKI
>NZ_CP016072.1|WP_065354288.1|1649850_1650561_+|hypothetical-protein
MSNFTFPDPFKKSMENFQRMDRVVSRTLRPQINLAYKYNSIFSPELINSLQVSLQIQKQLNLSSESRQRLLETSQKIQTQFSKPMAEISATLMKFQAQQARIISQQFKPPVINVFSSNKILNEIEQDESVVEEAVSSMENLGQQDFYLPQSFFTFELFDQLLNVLNTGKVKYPKTTYVINGFGMSISSFYEQVIYDYLFCKIFGSLPANLIDQMPLIFINIFISLIIYISCQRISK
>NZ_CP016072.1|WP_065354289.1|1650612_1650882_-|hypothetical-protein
MKEIIKKIADIMNYEVWYKKLILLIVLSGLLIVGVLLVDALINIIRILFNIELFIVLSPVFALLIMFACQIKYPKDKTRNYSEYAKNRM
>NZ_CP016072.1|WP_065354290.1|1650902_1651343_-|hypothetical-protein
MKRKRRLIYSALGEYVFHGNDIFLNSEQIKIVNEHNKKLQKLLKKSMRERRLRKVIIFVRKTPSYLLQGLSNIVSVLITPFEWFATKVDDIAVDYENKINLRVKKLEATDKLNNYACDVVLPLLEKVETEDMFEVHQREIKKLKRN
>NZ_CP016072.1|WP_065354291.1|1651375_1651882_-|hypothetical-protein
MDFGVVILLTVVFGVLALIVIPEVVDRKKIKKVVEIVKGIDEKVFLRTPLERRVELKLADKEIYNVSYHDFKQPLFIDLNQSKRIHKAAVVSEYHYTKAVIKYGDWKIEVLGDVNGKLKIASIYNVKIEKLYVYRISWYFEDNKVKNLTVKSKRCFYDDNKKKIFMSV
>NZ_CP016072.1|WP_065354292.1|1651924_1652410_-|hypothetical-protein
MEEYWVAKLPKGYWNEHTEDWVKPVHATMLSSDTMTKEQAEDWFKRRIDKPFVVVSLKINYHVGNYIVCEENDLVEIPKIDAKDLKELTIKSLEDVMSLEEKSLLKDLLTATREDAMKGFDYTIHRVNKHGLRNSVIESMLKLKGFDVEIYEGELYLFWRD
>NZ_CP016072.1|WP_065354294.1|1652619_1653057_-|hypothetical-protein
MNALGLMLISLTVLFLLIMILFPEDRFYFRKYPKTIVLNELEVIEHYDLITLYMKDGKNFTLHLNDYKKQYNSDSDFITVDVGLIARKDSFVLFDMYSAGKAKCKEKELSYIKNSNGKFTSLYVKNKRMLKKLEYKIRDDVAYKC

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

643453 : 683634

Staphylococcus_phage(98.39%)

head,portal,plate,tail,holin,terminase,capsid,integrase

attL 635942:635955|attR 661774:661787

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
635942:635955	attL	NA	NA	NA	NA
WP_063282612.1\|643453_644500_-\|integrase	site-specific integrase	A0A223LI82	Staphylococcus_phage	8.8e-106	53.7
WP_065354048.1\|644632_644824_+	hypothetical protein	A0A0K1LLB1	Staphylococcus_phage	6.2e-18	71.4
WP_065354049.1\|644811_645696_-	hypothetical protein	A0A0K1LKD8	Staphylococcus_phage	6.2e-137	82.3
WP_081247735.1\|645748_646471_-	LexA family transcriptional regulator	A0A1J0MFC5	Staphylococcus_phage	2.4e-131	98.8
WP_063282614.1\|646622_646835_+	helix-turn-helix transcriptional regulator	A0A1J0MF19	Staphylococcus_phage	2.1e-30	100.0
WP_037543667.1\|647045_647309_-	CRISPR-associated protein Cas2	A0A1J0MFM9	Staphylococcus_phage	1.8e-44	100.0
WP_015728796.1\|647365_647560_+	hypothetical protein	A0A1J0MFF3	Staphylococcus_phage	5.7e-19	100.0
WP_060830240.1\|647829_648057_-	hypothetical protein	A0A223LIF2	Staphylococcus_phage	1.9e-34	100.0
WP_060830239.1\|648134_648878_+	antirepressor	A0A223LFP5	Staphylococcus_phage	3.4e-136	99.6
WP_065354050.1\|648874_649099_+	hypothetical protein	A0A1J0MG48	Staphylococcus_phage	2.3e-32	98.6
WP_065354051.1\|649344_649605_+	DUF1108 family protein	A0A223LGR0	Staphylococcus_phage	1.3e-39	94.2
WP_019167935.1\|649616_649841_+	hypothetical protein	A0A223LFR3	Staphylococcus_phage	5.2e-32	100.0
WP_065354052.1\|649824_650310_+	siphovirus Gp157 family protein	A0A223LGF3	Staphylococcus_phage	3.8e-80	98.1
WP_015728804.1\|650310_650979_+	single-stranded DNA-binding protein	A0A1J0MFT8	Staphylococcus_phage	1.0e-120	100.0
WP_015728805.1\|650978_651416_+	single-stranded DNA-binding protein	A0A1J0MFL8	Staphylococcus_phage	2.4e-73	98.6
WP_015728806.1\|651396_651591_+	hypothetical protein	A0A1J0MFQ8	Staphylococcus_phage	3.2e-30	100.0
WP_065354053.1\|651599_652274_+	hypothetical protein	A0A1J0MFS2	Staphylococcus_phage	2.4e-117	89.7
WP_065354054.1\|652266_652995_+	DnaD domain protein	A0A1J0MG54	Staphylococcus_phage	2.4e-118	97.1
WP_065354055.1\|652999_653347_+	hypothetical protein	A0A1J0MFD5	Staphylococcus_phage	2.9e-58	100.0
WP_065354056.1\|653339_654584_+	AAA family ATPase	A0A1J0MF36	Staphylococcus_phage	2.9e-233	99.8
WP_065354057.1\|654580_654805_+	hypothetical protein	A0A1J0MFB5	Staphylococcus_phage	2.2e-35	100.0
WP_065354058.1\|654785_655217_+	RusA family crossover junction endodeoxyribonuclease	A0A1J0MFP7	Staphylococcus_phage	2.1e-77	98.6
WP_065354059.1\|655209_655428_+	hypothetical protein	A0A1J0MFH2	Staphylococcus_phage	1.3e-32	95.8
WP_065354060.1\|655438_655747_+	hypothetical protein	A0A223LH51	Staphylococcus_phage	5.6e-45	88.2
WP_082239515.1\|656142_656634_+	DUF3310 domain-containing protein	A0A1J0MF65	Staphylococcus_phage	3.9e-88	99.4
WP_063282630.1\|656878_657091_+	hypothetical protein	A0A1J0MFY5	Staphylococcus_phage	1.4e-31	100.0
WP_065354061.1\|657483_657879_+	hypothetical protein	A0A1J0MFL6	Staphylococcus_phage	3.7e-57	86.2
WP_065354062.1\|657875_658256_+	hypothetical protein	A0A223LGW7	Staphylococcus_phage	6.3e-62	95.2
WP_065354064.1\|658470_658950_+	hypothetical protein	A0A1J0MFQ4	Staphylococcus_phage	1.2e-81	100.0
WP_154800930.1\|658950_659106_+	hypothetical protein	NA	NA	NA	NA
WP_015978034.1\|659107_659263_+	hypothetical protein	Q4ZD35	Staphylococcus_phage	1.6e-19	100.0
WP_065354065.1\|659255_659795_+	dUTP pyrophosphatase	Q4ZD34	Staphylococcus_phage	3.0e-94	96.6
WP_065354066.1\|659858_660134_+	hypothetical protein	A0A1W6JNJ2	Staphylococcus_phage	6.0e-06	32.0
WP_065354067.1\|660134_660599_+	class I SAM-dependent methyltransferase	A8ATY8	Listeria_phage	1.1e-65	72.5
WP_037542749.1\|660595_660784_+	DUF1381 domain-containing protein	A0A223LFC9	Staphylococcus_phage	3.6e-26	100.0
WP_063282639.1\|660799_660967_+	hypothetical protein	A0A1J0MFF2	Staphylococcus_phage	1.0e-21	100.0
WP_154800885.1\|660966_661110_+	hypothetical protein	A0A1J0MFM4	Staphylococcus_phage	7.4e-16	100.0
WP_037543601.1\|661110_661536_+	sigma-70 family RNA polymerase sigma factor	A0A1J0MFD1	Staphylococcus_phage	7.5e-72	100.0
WP_065354068.1\|661824_662268_+\|terminase	terminase small subunit	A0A1J0MFZ9	Staphylococcus_phage	4.9e-74	100.0
661774:661787	attR	NA	NA	NA	NA
WP_037543597.1\|662254_663529_+\|terminase	PBSX family phage terminase large subunit	A0A1J0MFI2	Staphylococcus_phage	5.3e-238	100.0
WP_065354069.1\|663540_664986_+\|portal	phage portal protein	A0A1J0MFG2	Staphylococcus_phage	1.7e-269	98.1
WP_065354070.1\|664978_666328_+\|capsid	minor capsid protein	A0A1J0MF61	Staphylococcus_phage	5.2e-252	99.1
WP_037543592.1\|666327_666522_+	hypothetical protein	A0A1J0MG79	Staphylococcus_phage	3.5e-29	100.0
WP_103863095.1\|666539_667283_+	DUF4355 domain-containing protein	A0A1J0MFG0	Staphylococcus_phage	3.9e-68	96.8
WP_063282643.1\|667301_668213_+	hypothetical protein	A0A1J0MFM8	Staphylococcus_phage	1.5e-162	97.7
WP_063282644.1\|668301_668751_+	Ig domain-containing protein	A0A1J0MFM7	Staphylococcus_phage	8.4e-66	89.3
WP_015728833.1\|668762_669095_+\|head,tail	phage head-tail connector protein	A0A1J0MFR4	Staphylococcus_phage	1.1e-54	100.0
WP_065354072.1\|669091_669397_+	hypothetical protein	A0A1J0MF86	Staphylococcus_phage	2.2e-49	99.0
WP_065354073.1\|669396_669747_+	HK97 gp10 family phage protein	A0A1J0MFN9	Staphylococcus_phage	7.0e-60	99.1
WP_063282647.1\|669758_670154_+	hypothetical protein	A0A1J0MF66	Staphylococcus_phage	6.5e-70	100.0
WP_015728836.1\|670171_670825_+\|tail	phage major tail protein, TP901-1 family	A0A1J0MG89	Staphylococcus_phage	1.1e-69	100.0
WP_060830209.1\|670884_671265_+\|tail	phage tail protein	A0A1J0MFC0	Staphylococcus_phage	1.1e-63	100.0
WP_065354074.1\|671294_671645_+	hypothetical protein	A0A1J0MFN5	Staphylococcus_phage	1.9e-57	99.1
WP_065354075.1\|671661_674781_+\|tail	phage tail protein	A0A223LI73	Staphylococcus_phage	2.2e-245	98.1
WP_015728840.1\|674793_675726_+\|tail	phage tail family protein	A0A1J0MF79	Staphylococcus_phage	1.8e-179	100.0
WP_065354076.1\|675738_677136_+	hypothetical protein	A0A1J0MF94	Staphylococcus_phage	1.7e-258	98.9
WP_065354077.1\|677139_677832_+	hypothetical protein	A0A1J0MFD6	Staphylococcus_phage	1.2e-100	98.7
WP_063282652.1\|677843_678887_+	hypothetical protein	A0A1J0MFI8	Staphylococcus_phage	1.5e-190	99.7
WP_065354078.1\|678903_680175_+\|plate	BppU family phage baseplate upper protein	A0A1J0MFQ3	Staphylococcus_phage	6.2e-239	99.3
WP_065354079.1\|680207_680582_+	hypothetical protein	A0A1J0MFD0	Staphylococcus_phage	4.4e-52	94.4
WP_065354080.1\|680704_682594_+	CHAP domain-containing protein	A0A1J0MFI1	Staphylococcus_phage	0.0e+00	99.0
WP_060830201.1\|682611_682866_+\|holin	phage holin	A0A1J0MFP5	Staphylococcus_phage	1.4e-38	96.4
WP_065354081.1\|682878_683634_+	CHAP domain-containing protein	A0A1J0MF88	Staphylococcus_phage	8.1e-146	96.0

DBSCAN-SWA_2

1109658 : 1131053

Staphylococcus_phage(94.44%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_014613578.1\|1109658_1111062_+	o-succinylbenzoate--CoA ligase	A0A2H4PQM9	Staphylococcus_phage	2.4e-135	52.3
WP_014613579.1\|1111064_1112051_+	o-succinylbenzoate synthase	A0A2H4PQM0	Staphylococcus_phage	7.3e-78	47.6
WP_014613580.1\|1112026_1112278_-	membrane protein insertion efficiency factor YidD	A0A2H4PQM5	Staphylococcus_phage	4.6e-29	70.6
WP_014613581.1\|1112336_1112807_+	nucleoside triphosphatase YtkD	A0A2H4PQM4	Staphylococcus_phage	7.1e-39	53.8
WP_082239543.1\|1112811_1113564_+	prolyl oligopeptidase family serine peptidase	A0A2H4PQM6	Staphylococcus_phage	2.3e-84	61.6
WP_065354154.1\|1113961_1115542_-	phosphoenolpyruvate carboxykinase (ATP)	A0A2H4PQN1	Staphylococcus_phage	7.5e-242	76.2
WP_014613585.1\|1117290_1118202_+	hypothetical protein	A0A2H4PQQ8	Staphylococcus_phage	9.4e-88	68.3
WP_014613586.1\|1118343_1119180_+	aldo/keto reductase	A0A2H4PQR8	Staphylococcus_phage	5.0e-112	69.3
WP_014613587.1\|1119281_1119629_-	fluoride efflux transporter CrcB	NA	NA	NA	NA
WP_014613589.1\|1120022_1120325_-	hypothetical protein	NA	NA	NA	NA
WP_065354155.1\|1120477_1121188_+	transaldolase	M1PR54	Cyanophage	1.5e-21	39.0
WP_063278602.1\|1121354_1121804_+	hypothetical protein	A0A2H4PQT8	Staphylococcus_phage	1.3e-10	36.7
WP_014613592.1\|1121806_1122238_-	hypothetical protein	NA	NA	NA	NA
WP_080552908.1\|1122240_1122726_-	sigma-70 family RNA polymerase sigma factor	A0A2H4PQT5	Staphylococcus_phage	3.8e-19	36.7
WP_014613594.1\|1122926_1123151_+	hypothetical protein	NA	NA	NA	NA
WP_065354156.1\|1123307_1124171_+	autolysin	A0A1W6JQU5	Staphylococcus_phage	4.2e-37	41.7
WP_063284446.1\|1124559_1126128_+	FAD-dependent oxidoreductase	A0A2H4PQX2	Staphylococcus_phage	2.0e-13	60.3
WP_014613597.1\|1126584_1127631_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	A0A2H4PQS8	Staphylococcus_phage	1.4e-106	54.7
WP_014613598.1\|1127635_1128265_+	riboflavin synthase	A0A2H4PQS5	Staphylococcus_phage	7.2e-63	59.5
WP_065354157.1\|1128278_1129460_+	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	A0A2H4PQS2	Staphylococcus_phage	5.3e-152	65.9
WP_103926881.1\|1129477_1129942_+	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	3.2e-52	65.6
WP_014613601.1\|1130066_1131053_-	proline dehydrogenase	A0A2H4PQT6	Staphylococcus_phage	2.8e-122	67.0

DBSCAN-SWA_3

1135170 : 1142961

Staphylococcus_phage(100.0%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_014613607.1\|1135170_1135734_-	methyltransferase domain-containing protein	A0A2H4PQV0	Staphylococcus_phage	1.5e-56	56.8
WP_014613608.1\|1135730_1136684_-	TIGR01212 family radical SAM protein	A0A2H4PQV5	Staphylococcus_phage	6.4e-63	80.4
WP_065354160.1\|1136831_1138013_+	MFS transporter	A0A2H4PQR6	Staphylococcus_phage	2.2e-137	62.2
WP_100040084.1\|1138303_1140736_+\|tRNA	leucine--tRNA ligase	A0A2H4PQS0	Staphylococcus_phage	0.0e+00	81.8
WP_014613611.1\|1140762_1141074_+	rhodanese-like domain-containing protein	A0A2H4PQR9	Staphylococcus_phage	1.7e-33	69.9
WP_063278942.1\|1141704_1142961_-	NAD(P)/FAD-dependent oxidoreductase	A0A2H4PQX1	Staphylococcus_phage	1.3e-31	69.5

DBSCAN-SWA_4

1266118 : 1274950

uncultured_Mediterranean_phage(50.0%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_014613720.1\|1266118_1267117_+	Holliday junction branch migration DNA helicase RuvB	E3T4M7	Cafeteria_roenbergensis_virus	8.0e-08	29.1
WP_014613721.1\|1267134_1268160_+\|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	NA	NA	NA	NA
WP_014613722.1\|1268177_1269317_+\|tRNA	tRNA guanosine(34) transglycosylase Tgt	A0A1B1IVQ4	uncultured_Mediterranean_phage	1.2e-87	45.5
WP_014613723.1\|1269333_1269597_+	preprotein translocase subunit YajC	A0A1B1IVR5	uncultured_Mediterranean_phage	2.0e-06	42.9
WP_065354186.1\|1269738_1272018_+	protein translocase subunit SecDF	A0A1B1IVP7	uncultured_Mediterranean_phage	3.2e-28	32.0
WP_065354672.1\|1272134_1274420_+	single-stranded-DNA-specific exonuclease RecJ	A7KV88	Bacillus_phage	2.9e-69	29.9
WP_014613726.1\|1274431_1274950_+	adenine phosphoribosyltransferase	A0A1V0SKE5	Klosneuvirus	8.9e-27	48.0

DBSCAN-SWA_5

1620276 : 1642249

Staphylococcus_phage(88.24%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_065354247.1\|1620276_1620864_-	RusA family crossover junction endodeoxyribonuclease	A0A0N7GFG7	Staphylococcus_phage	1.5e-78	74.5
WP_065354248.1\|1620868_1621294_-	hypothetical protein	NA	NA	NA	NA
WP_065354249.1\|1621299_1622019_-	NTP pyrophosphohydrolase	A0A0N9SIY2	Staphylococcus_phage	1.1e-86	66.4
WP_065354250.1\|1622032_1622269_-	hypothetical protein	NA	NA	NA	NA
WP_065354251.1\|1622288_1622525_-	thioredoxin family protein	A0A0N9SGY3	Staphylococcus_phage	2.7e-15	52.6
WP_065354252.1\|1622524_1623175_-	AAA family ATPase	A0A0N9RTZ3	Staphylococcus_phage	5.9e-52	53.0
WP_065354253.1\|1623188_1624208_-	class 1b ribonucleoside-diphosphate reductase subunit beta	A0A0N9SK77	Staphylococcus_phage	9.6e-142	71.6
WP_065354255.1\|1624802_1625630_-	HNH endonuclease	A0A0N9SHZ0	Staphylococcus_phage	2.2e-99	60.7
WP_065354257.1\|1627942_1628299_-	hypothetical protein	NA	NA	NA	NA
WP_110178903.1\|1628312_1628693_-	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	A0A0N9RZU5	Staphylococcus_phage	8.0e-25	50.8
WP_158004116.1\|1628725_1628866_-	hypothetical protein	NA	NA	NA	NA
WP_065354258.1\|1628900_1629590_-	hypothetical protein	A0A0N9RRN5	Staphylococcus_phage	9.1e-43	41.7
WP_065354259.1\|1629602_1630115_-	siphovirus Gp157 family protein	A0A0N9SIY9	Staphylococcus_phage	7.0e-40	53.5
WP_065354260.1\|1630201_1630807_-	hypothetical protein	A0A1P8CMJ6	Staphylococcus_phage	1.1e-23	31.8
WP_065354261.1\|1630806_1631589_-	prohibitin family protein	W5RAS0	Staphylococcus_phage	2.4e-68	62.4
WP_065354262.1\|1631588_1631900_-	hypothetical protein	NA	NA	NA	NA
WP_065354263.1\|1631896_1632403_-	hypothetical protein	NA	NA	NA	NA
WP_065354264.1\|1632425_1633277_-	DNA (cytosine-5-)-methyltransferase	A0A0N9SK84	Staphylococcus_phage	7.8e-28	33.2
WP_119529671.1\|1633348_1633513_+	DNA cytosine methyltransferase	Q77YW9	Bacillus_phage	3.4e-09	57.7
WP_065354265.1\|1633811_1634402_-	nucleoside 2-deoxyribosyltransferase	A0A1X9SIR5	Staphylococcus_phage	1.9e-86	77.9
WP_137987001.1\|1634428_1634653_-	hypothetical protein	NA	NA	NA	NA
WP_137987002.1\|1634637_1634949_-	hypothetical protein	NA	NA	NA	NA
WP_065354268.1\|1634941_1635262_-	hypothetical protein	NA	NA	NA	NA
WP_065354269.1\|1635287_1635536_-	hypothetical protein	NA	NA	NA	NA
WP_065354270.1\|1635695_1636067_-	nuclease	A0A1W6JQ32	Staphylococcus_phage	2.9e-35	63.5
WP_065354677.1\|1636095_1637415_-	ATP-dependent DNA ligase	A0A0N9SK95	Staphylococcus_phage	2.9e-130	54.9
WP_065354271.1\|1637389_1637737_-	hypothetical protein	NA	NA	NA	NA
WP_065354272.1\|1637818_1638238_-	hypothetical protein	NA	NA	NA	NA
WP_065354273.1\|1638319_1642249_-	DNA polymerase III subunit alpha	A0A1P8CX14	Bacillus_phage	0.0e+00	42.7

DBSCAN-SWA_6

1646585 : 1671694

Staphylococcus_phage(62.5%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_065354283.1\|1646585_1646858_-	hypothetical protein	A0A0A7NNM5	Lactobacillus_phage	2.7e-06	45.1
WP_065354284.1\|1647279_1648632_-\|transposase	IS200/IS605 family element transposase accessory protein TnpB	A0A142F1Q5	Bacillus_phage	4.5e-70	40.6
WP_065354285.1\|1648809_1649202_-	type II toxin-antitoxin system death-on-curing family toxin	A0A0N9SKD8	Staphylococcus_phage	4.5e-23	46.8
WP_065354286.1\|1649198_1649447_-	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	NA	NA	NA	NA
WP_065354287.1\|1649560_1649830_+	YolD-like family protein	A0A2H4JEH6	uncultured_Caudovirales_phage	2.0e-06	42.4
WP_065354288.1\|1649850_1650561_+	hypothetical protein	NA	NA	NA	NA
WP_065354289.1\|1650612_1650882_-	hypothetical protein	A0A0N9STI7	Staphylococcus_phage	6.5e-13	50.6
WP_065354290.1\|1650902_1651343_-	hypothetical protein	Q4ZBC7	Staphylococcus_virus	1.6e-21	40.7
WP_065354291.1\|1651375_1651882_-	hypothetical protein	NA	NA	NA	NA
WP_065354292.1\|1651924_1652410_-	hypothetical protein	NA	NA	NA	NA
WP_065354294.1\|1652619_1653057_-	hypothetical protein	NA	NA	NA	NA
WP_158004119.1\|1653145_1653319_-	hypothetical protein	NA	NA	NA	NA
WP_065354295.1\|1653315_1653504_-	hypothetical protein	Q4ZDZ4	Staphylococcus_virus	8.2e-07	58.2
WP_065354296.1\|1653509_1654028_-	dUTPase	A0A2H4JAI9	uncultured_Caudovirales_phage	5.2e-59	71.8
WP_065354297.1\|1654031_1654352_-	hypothetical protein	NA	NA	NA	NA
WP_065354298.1\|1654606_1654978_-	hypothetical protein	A0A142F184	Bacillus_phage	2.0e-33	60.6
WP_065354299.1\|1654978_1655158_-	hypothetical protein	Q4ZD38	Staphylococcus_phage	2.6e-18	76.3
WP_158004120.1\|1655158_1655314_-	hypothetical protein	NA	NA	NA	NA
WP_065354300.1\|1655314_1655794_-	hypothetical protein	A0A1J0MFQ4	Staphylococcus_phage	3.8e-80	98.1
WP_065354301.1\|1655983_1658296_-	AAA family ATPase	A0A2H4IYY2	uncultured_Caudovirales_phage	1.1e-220	49.7
WP_065354302.1\|1658296_1658698_-	hypothetical protein	NA	NA	NA	NA
WP_065354303.1\|1658687_1658969_-	hypothetical protein	NA	NA	NA	NA
WP_065354304.1\|1658978_1659389_-	hypothetical protein	NA	NA	NA	NA
WP_065354305.1\|1659561_1659984_-	hypothetical protein	NA	NA	NA	NA
WP_065354306.1\|1659983_1660364_-	hypothetical protein	A0A223LGW7	Staphylococcus_phage	3.8e-51	76.2
WP_065354307.1\|1660360_1660756_-	hypothetical protein	A0A1J0MFF1	Staphylococcus_phage	1.7e-41	68.9
WP_020219705.1\|1660755_1661004_-	hypothetical protein	A0A223LIA3	Staphylococcus_phage	8.5e-44	100.0
WP_065354678.1\|1661003_1661441_-	hypothetical protein	V5XV46	Staphylococcus_phage	1.2e-64	89.9
WP_065354308.1\|1661548_1661767_-	hypothetical protein	NA	NA	NA	NA
WP_065354309.1\|1661756_1661978_-	hypothetical protein	NA	NA	NA	NA
WP_065354311.1\|1662343_1662898_-	hypothetical protein	I6X459	Staphylococcus_phage	1.5e-32	43.6
WP_065354312.1\|1662914_1663145_-	hypothetical protein	NA	NA	NA	NA
WP_065354313.1\|1663228_1663642_-	hypothetical protein	NA	NA	NA	NA
WP_065354314.1\|1663631_1664045_-	hypothetical protein	A0A2P1JU11	Anoxybacillus_phage	4.1e-06	38.7
WP_065354315.1\|1664393_1666148_-	single-stranded DNA-binding protein	A0A0N9SK20	Staphylococcus_phage	3.3e-198	58.7
WP_065354316.1\|1666144_1667260_-	hypothetical protein	A0A0N9RRG7	Staphylococcus_phage	1.6e-134	62.8
WP_065354317.1\|1667275_1668835_-	helicase DnaB	A0A0N9SIU7	Staphylococcus_phage	1.1e-218	71.9
WP_065354318.1\|1668848_1669346_-	hypothetical protein	A0A0N9S850	Staphylococcus_phage	4.5e-36	53.6
WP_065354319.1\|1669414_1670389_-	ATP-binding protein	A0A0N9SGS5	Staphylococcus_phage	2.1e-133	70.2
WP_065354320.1\|1670743_1671694_-	hypothetical protein	A0A0N7GFF9	Staphylococcus_phage	5.9e-77	50.0

DBSCAN-SWA_7

1675853 : 1742067

Staphylococcus_phage(87.5%)

holin,terminase,tail,integrase

attL 1679895:1679910|attR 1751995:1752010

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_137987003.1\|1675853_1676951_-\|integrase	site-specific integrase	A0A0N9SK33	Staphylococcus_phage	2.4e-85	50.6
WP_065354326.1\|1677535_1677892_+	hypothetical protein	NA	NA	NA	NA
WP_137987004.1\|1677926_1678118_-	hypothetical protein	NA	NA	NA	NA
WP_065354328.1\|1678200_1678728_-	hypothetical protein	NA	NA	NA	NA
WP_065354329.1\|1678747_1679317_-	hypothetical protein	NA	NA	NA	NA
WP_065354330.1\|1679429_1679702_-	hypothetical protein	NA	NA	NA	NA
WP_065354331.1\|1679744_1680368_-	hypothetical protein	NA	NA	NA	NA
1679895:1679910	attL	NA	NA	NA	NA
WP_065354332.1\|1680367_1680718_-	hypothetical protein	NA	NA	NA	NA
WP_065354333.1\|1680704_1680992_-	hypothetical protein	NA	NA	NA	NA
WP_065354334.1\|1681038_1681344_-	hypothetical protein	A0A220BZ01	Staphylococcus_phage	5.1e-30	60.4
WP_082239522.1\|1681346_1681652_-	hypothetical protein	A0A0N9RTT7	Staphylococcus_phage	5.4e-08	34.3
WP_065354335.1\|1681638_1681971_-	hypothetical protein	NA	NA	NA	NA
WP_065354336.1\|1682001_1682331_-	hypothetical protein	A0A220BZD5	Staphylococcus_phage	7.4e-19	42.6
WP_065354337.1\|1682372_1682675_-	hypothetical protein	NA	NA	NA	NA
WP_065354338.1\|1682688_1683285_-	hypothetical protein	NA	NA	NA	NA
WP_065354339.1\|1683543_1683783_-	hypothetical protein	NA	NA	NA	NA
WP_065354340.1\|1683865_1684297_-	hypothetical protein	NA	NA	NA	NA
WP_065354341.1\|1684382_1684616_-	hypothetical protein	NA	NA	NA	NA
WP_065354342.1\|1684711_1685029_-	hypothetical protein	NA	NA	NA	NA
WP_065354343.1\|1687452_1687794_-	hypothetical protein	NA	NA	NA	NA
WP_065354344.1\|1687790_1688102_-	hypothetical protein	NA	NA	NA	NA
WP_065354345.1\|1688118_1688727_-	hypothetical protein	NA	NA	NA	NA
WP_065354346.1\|1689614_1690520_-	hypothetical protein	NA	NA	NA	NA
WP_065354347.1\|1692965_1694444_+	hypothetical protein	A0A0N9SGU3	Staphylococcus_phage	2.7e-113	46.7
WP_065354348.1\|1694661_1694997_+	hypothetical protein	NA	NA	NA	NA
WP_065354349.1\|1695016_1695202_+	hypothetical protein	A0A0N7GFG2	Staphylococcus_phage	1.9e-11	57.9
WP_065354350.1\|1695204_1696413_+	hypothetical protein	W5RV85	Staphylococcus_phage	6.2e-55	33.3
WP_065354351.1\|1697705_1698590_+	hypothetical protein	A0A0N9SHV5	Staphylococcus_phage	4.7e-92	56.4
WP_065354352.1\|1698589_1700401_+\|terminase	terminase	A0A0N9RZP6	Staphylococcus_phage	3.8e-157	77.3
WP_065354353.1\|1700420_1701965_+	hypothetical protein	A0A0N9SK48	Staphylococcus_phage	1.8e-200	68.0
WP_065354354.1\|1701967_1703353_+	hypothetical protein	A0A0N9RRJ7	Staphylococcus_phage	8.6e-101	48.4
WP_065354355.1\|1703381_1703819_+	hypothetical protein	A0A0N9SIW4	Staphylococcus_phage	1.6e-45	65.1
WP_065354356.1\|1703850_1704855_+	hypothetical protein	A0A0N9S885	Staphylococcus_phage	6.9e-84	77.6
WP_065354357.1\|1705543_1705963_+	hypothetical protein	A0A0N9RTW0	Staphylococcus_phage	1.4e-41	68.6
WP_065354358.1\|1705962_1706631_+	hypothetical protein	A0A0N9SHW2	Staphylococcus_phage	2.2e-70	61.3
WP_065354681.1\|1706620_1707142_+	hypothetical protein	A0A0N9ST98	Staphylococcus_phage	1.8e-67	71.3
WP_065354359.1\|1707146_1707953_+	hypothetical protein	A0A0N9RZR7	Staphylococcus_phage	3.9e-53	45.2
WP_065354360.1\|1707995_1708730_+	hypothetical protein	A0A0N7GFG4	Staphylococcus_phage	1.8e-65	53.3
WP_082239545.1\|1708819_1709089_+	hypothetical protein	NA	NA	NA	NA
WP_137987005.1\|1709157_1709724_+	hypothetical protein	A0A0N9SK55	Staphylococcus_phage	2.6e-43	51.4
WP_065354362.1\|1709710_1710187_+	hypothetical protein	NA	NA	NA	NA
WP_065354682.1\|1710220_1711228_+\|integrase	site-specific integrase	A0A0N9SIX3	Staphylococcus_phage	2.9e-138	69.2
WP_065354363.1\|1711320_1715331_+\|tail	phage tail tape measure protein	A0A0N9S894	Staphylococcus_phage	3.5e-227	43.4
WP_065354364.1\|1715297_1719878_+	peptidoglycan DD-metalloendopeptidase family protein	A0A0N9S894	Staphylococcus_phage	4.6e-260	52.9
WP_065354365.1\|1719895_1721980_+	hypothetical protein	A0A0N9SGW2	Staphylococcus_phage	2.4e-216	53.6
WP_065354366.1\|1722100_1729513_+	hypothetical protein	A0A0N9RTX0	Staphylococcus_phage	0.0e+00	40.7
WP_065354367.1\|1729532_1729889_+	hypothetical protein	A0A0N9SK58	Staphylococcus_phage	8.9e-18	49.6
WP_065354368.1\|1729888_1730068_+	hypothetical protein	NA	NA	NA	NA
WP_065354369.1\|1732886_1733291_+	hypothetical protein	NA	NA	NA	NA
WP_065354370.1\|1733443_1733764_+\|holin	phage holin	A0A1D6Z272	Staphylococcus_phage	3.0e-09	44.0
WP_065354371.1\|1733813_1735781_+	hypothetical protein	A0A0N9RRL9	Staphylococcus_phage	1.1e-16	31.6
WP_065354372.1\|1735791_1736121_+	hypothetical protein	A0A2H4JDD2	uncultured_Caudovirales_phage	7.4e-19	46.2
WP_065354373.1\|1736126_1736279_+	XkdX family protein	H9A0Q0	Staphylococcus_phage	6.6e-15	78.7
WP_065354374.1\|1736346_1737804_+	CHAP domain-containing protein	Q4ZBG9	Staphylococcus_virus	1.5e-127	49.3
WP_065354375.1\|1737863_1738046_-	hypothetical protein	NA	NA	NA	NA
WP_065354376.1\|1738201_1738561_-	hypothetical protein	NA	NA	NA	NA
WP_082239546.1\|1738673_1739600_-\|integrase	tyrosine-type recombinase/integrase	A0A218M4I3	Erwinia_phage	7.7e-13	26.9
WP_065354378.1\|1739892_1742067_-	translation initiation factor IF-2	E3T4N3	Cafeteria_roenbergensis_virus	6.6e-23	24.6
1751995:1752010	attR	NA	NA	NA	NA

DBSCAN-SWA_8

1966905 : 1975325

Synechococcus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_015728945.1\|1966905_1967472_-	phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	2.3e-28	38.9
WP_065354425.1\|1967471_1968503_-	phosphoribosylformylglycinamidine cyclo-ligase	Q58MH8	Prochlorococcus_phage	1.2e-62	42.7
WP_014614274.1\|1968506_1969928_-	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	3.2e-50	33.4
WP_065354426.1\|1969906_1972096_-	phosphoribosylformylglycinamidine synthase subunit PurL	A6N228	Microbacterium_phage	7.4e-139	40.3
WP_014614276.1\|1972088_1972760_-	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA
WP_014614277.1\|1972761_1973022_-	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA
WP_014614278.1\|1973024_1973726_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	G8EYA2	Synechococcus_phage	1.0e-49	44.2
WP_080552893.1\|1973722_1974895_-	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA
WP_014614280.1\|1974842_1975325_-	5-(carboxyamino)imidazole ribonucleotide mutase	A0A2P0VNU7	Tetraselmis_virus	3.1e-21	44.9

DBSCAN-SWA_9

2033378 : 2044969

Streptococcus_phage(88.89%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000284571.1\|2033378_2034983_+\|transposase	IS1182-like element IS1182 family transposase	A0ZS58	Staphylococcus_virus	1.1e-128	44.4
WP_001835223.1\|2035538_2035736_+	hypothetical protein	NA	NA	NA	NA
WP_000802831.1\|2035703_2036363_-	RibD family protein	A0A1B0RXM8	Streptococcus_phage	3.1e-125	100.0
WP_072387101.1\|2036473_2036881_-	WYL domain-containing protein	A0A1B0RXM3	Streptococcus_phage	1.1e-59	98.3
WP_001079938.1\|2036853_2037426_-	HTH domain-containing protein	A0A1B0RXM1	Streptococcus_phage	5.5e-102	99.5
WP_001096887.1\|2037701_2038496_-	aminoglycoside O-phosphotransferase APH(3')-IIIa	E4ZFP6	Streptococcus_phage	2.3e-154	100.0
WP_000627290.1\|2038588_2039131_-	streptothricin N-acetyltransferase Sat4	A0A1B0RXL7	Streptococcus_phage	8.9e-94	100.0
WP_000662263.1\|2040067_2040802_-	class I SAM-dependent methyltransferase	A0A1X9I6N4	Streptococcus_phage	1.5e-141	100.0
WP_000228166.1\|2040782_2041652_-	hypothetical protein	A0A1X9I6C9	Streptococcus_phage	4.3e-159	95.8
WP_000567888.1\|2041754_2042000_-	single-stranded DNA-binding protein	NA	NA	NA	NA
WP_082239526.1\|2042863_2044969_-	type IA DNA topoisomerase	A0A1X9I6W8	Streptococcus_phage	1.2e-268	98.6

DBSCAN-SWA_10

2208094 : 2256375

Staphylococcus_phage(84.85%)

head,portal,tail,protease,holin,terminase,capsid,integrase

attL 2209597:2209618|attR 2250957:2250978

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_014614488.1\|2208094_2208592_-	N-acetyltransferase	A0A2H4J136	uncultured_Caudovirales_phage	5.2e-16	31.7
WP_014614489.1\|2208688_2209276_-	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	A0A223W000	Agrobacterium_phage	1.4e-52	54.7
2209597:2209618	attL	NA	NA	NA	NA
WP_065354463.1\|2209669_2210005_-	hypothetical protein	NA	NA	NA	NA
WP_065354464.1\|2210022_2210376_-	hypothetical protein	A0A2H4J1J0	uncultured_Caudovirales_phage	8.5e-05	49.1
WP_082239529.1\|2210505_2210658_+	ribbon-helix-helix protein, CopG family	NA	NA	NA	NA
WP_065354465.1\|2210654_2211005_+	hypothetical protein	NA	NA	NA	NA
WP_065354466.1\|2211053_2212442_-	CHAP domain-containing protein	A0A1D6Z273	Staphylococcus_phage	1.4e-148	57.9
WP_065354467.1\|2212455_2212761_-\|holin	phage holin	A0A068A215	Staphylococcus_phage	5.4e-24	60.2
WP_096533233.1\|2212888_2213176_-	DUF2951 family protein	A0A1J0MFW4	Staphylococcus_phage	2.2e-43	100.0
WP_020220196.1\|2213196_2213472_-	hypothetical protein	A0A1J0MFP4	Staphylococcus_phage	2.9e-45	100.0
WP_065354469.1\|2217698_2219189_-\|tail	phage tail protein	A0A1J0MFV2	Staphylococcus_phage	1.1e-287	98.2
WP_065354470.1\|2219188_2223523_-\|tail	phage tail tape measure protein	A0A1J0MFP9	Staphylococcus_phage	0.0e+00	82.5
WP_096533186.1\|2223539_2223680_-	hypothetical protein	A0A1J0MFX7	Staphylococcus_phage	2.6e-18	100.0
WP_065354471.1\|2223721_2224168_-	hypothetical protein	A0A1J0MFL9	Staphylococcus_phage	1.6e-72	100.0
WP_037542773.1\|2224233_2225178_-	hypothetical protein	A0A1J0MFV0	Staphylococcus_phage	1.0e-174	100.0
WP_065354472.1\|2225165_2225552_-	hypothetical protein	A0A1J0MFP0	Staphylococcus_phage	3.7e-70	100.0
WP_065354473.1\|2225548_2225926_-	HK97 gp10 family phage protein	A0A1J0MGE3	Staphylococcus_phage	8.1e-62	98.4
WP_065354474.1\|2225925_2226258_-\|head,tail	head-tail adaptor protein	A0A1J0MG09	Staphylococcus_phage	1.4e-57	100.0
WP_099984945.1\|2226238_2226529_-\|head,tail	phage head-tail adapter protein	A0A1J0MFU4	Staphylococcus_phage	2.7e-49	100.0
WP_065354475.1\|2226713_2227934_-\|capsid	phage major capsid protein	A0A1J0MFW8	Staphylococcus_phage	3.2e-224	100.0
WP_037542765.1\|2228012_2228585_-\|head,protease	HK97 family phage prohead protease	A0A1J0MFL1	Staphylococcus_phage	2.0e-104	100.0
WP_137987008.1\|2228559_2229774_-\|portal	phage portal protein	A0A1J0MFU3	Staphylococcus_phage	9.5e-229	99.8
WP_065354477.1\|2229836_2230034_-	hypothetical protein	A0A1J0MFN2	Staphylococcus_phage	1.6e-24	100.0
WP_065354478.1\|2230045_2231746_-\|terminase	terminase	A0A1J0MGD9	Staphylococcus_phage	0.0e+00	100.0
WP_065354479.1\|2231745_2232216_-\|terminase	phage terminase small subunit P27 family	A0A1J0MG04	Staphylococcus_phage	3.7e-80	100.0
WP_065354480.1\|2232310_2232667_-	HNH endonuclease	A0A1J0MFT4	Staphylococcus_phage	2.3e-66	100.0
WP_065354481.1\|2232672_2233050_-	hypothetical protein	A0A1J0MFN7	Staphylococcus_phage	6.9e-61	97.6
WP_065354482.1\|2233176_2233599_-	transcriptional regulator	A0A1J0MFW0	Staphylococcus_phage	9.7e-72	96.4
WP_082239530.1\|2233610_2233787_-	DUF1514 family protein	A0A1J0MFK3	Staphylococcus_phage	1.4e-21	96.6
WP_065354483.1\|2233786_2234092_-	hypothetical protein	A0A1J0MFT0	Staphylococcus_phage	6.2e-44	88.0
WP_065354484.1\|2234091_2234259_-	transcriptional regulator	A0A1J0MFF2	Staphylococcus_phage	2.8e-14	79.6
WP_037542749.1\|2234274_2234463_-	DUF1381 domain-containing protein	A0A223LFC9	Staphylococcus_phage	3.6e-26	100.0
WP_065354067.1\|2234459_2234924_-	class I SAM-dependent methyltransferase	A8ATY8	Listeria_phage	1.1e-65	72.5
WP_065354066.1\|2234924_2235200_-	hypothetical protein	A0A1W6JNJ2	Staphylococcus_phage	6.0e-06	32.0
WP_065354065.1\|2235263_2235803_-	dUTP pyrophosphatase	Q4ZD34	Staphylococcus_phage	3.0e-94	96.6
WP_015978034.1\|2235795_2235951_-	hypothetical protein	Q4ZD35	Staphylococcus_phage	1.6e-19	100.0
WP_154800930.1\|2235952_2236108_-	hypothetical protein	NA	NA	NA	NA
WP_065354064.1\|2236108_2236588_-	hypothetical protein	A0A1J0MFQ4	Staphylococcus_phage	1.2e-81	100.0
WP_065354485.1\|2236588_2236804_-	hypothetical protein	A0A1J0MFC2	Staphylococcus_phage	6.3e-35	97.2
WP_065354486.1\|2236803_2237187_-	hypothetical protein	A0A223LGW7	Staphylococcus_phage	4.4e-63	95.2
WP_082239531.1\|2237183_2237579_-	hypothetical protein	A0A1J0MFL6	Staphylococcus_phage	8.0e-60	88.5
WP_065354488.1\|2237578_2237827_-	hypothetical protein	A0A1J0MFK9	Staphylococcus_phage	4.0e-41	97.6
WP_063282631.1\|2237823_2238003_-	hypothetical protein	A0A1J0MGB9	Staphylococcus_phage	8.3e-25	100.0
WP_082239532.1\|2237972_2238185_-	hypothetical protein	A0A1J0MFY5	Staphylococcus_phage	2.5e-28	90.0
WP_065354489.1\|2238254_2238440_-	hypothetical protein	A0A223LIA9	Staphylococcus_phage	1.4e-27	95.1
WP_082239515.1\|2238429_2238921_-	DUF3310 domain-containing protein	A0A1J0MF65	Staphylococcus_phage	3.9e-88	99.4
WP_065354490.1\|2239316_2239625_-	hypothetical protein	A0A223LH51	Staphylococcus_phage	2.0e-50	97.1
WP_065354491.1\|2239635_2239848_-	hypothetical protein	A0A1J0MFH2	Staphylococcus_phage	1.4e-26	85.3
WP_065354492.1\|2239837_2240266_-	RusA family crossover junction endodeoxyribonuclease	A0A223LGP3	Staphylococcus_phage	1.0e-68	90.5
WP_065354493.1\|2240252_2240471_-	hypothetical protein	A0A1J0MFB5	Staphylococcus_phage	2.3e-32	94.4
WP_065354494.1\|2240467_2241712_-	AAA family ATPase	A0A1J0MF36	Staphylococcus_phage	1.0e-230	98.6
WP_065354055.1\|2241704_2242052_-	hypothetical protein	A0A1J0MFD5	Staphylococcus_phage	2.9e-58	100.0
WP_065354495.1\|2242056_2242803_-	DnaD domain protein	A0A1J0MF60	Staphylococcus_phage	7.6e-120	94.0
WP_065354496.1\|2242795_2243470_-	hypothetical protein	A0A1J0MFS2	Staphylococcus_phage	1.4e-125	96.0
WP_065354497.1\|2243483_2244077_-	single-stranded DNA-binding protein	A0A1J0MFK5	Staphylococcus_phage	8.8e-63	98.0
WP_065354498.1\|2244073_2244700_-	single-stranded DNA-binding protein	A0A1J0MFG1	Staphylococcus_phage	3.4e-113	100.0
WP_065354499.1\|2244700_2245186_-	siphovirus Gp157 family protein	A0A1J0MFF8	Staphylococcus_phage	1.1e-79	97.5
WP_019167935.1\|2245169_2245394_-	hypothetical protein	A0A223LFR3	Staphylococcus_phage	5.2e-32	100.0
WP_065354500.1\|2245405_2245666_-	DUF1108 family protein	A0A223LGR0	Staphylococcus_phage	3.0e-39	94.2
WP_065354501.1\|2245935_2246202_-	hypothetical protein	G4KNN2	Staphylococcus_phage	1.2e-16	52.3
WP_065354502.1\|2246203_2246527_-	DUF771 domain-containing protein	Q4ZD49	Staphylococcus_phage	4.1e-54	99.1
WP_065354503.1\|2246565_2247333_-	phage antirepressor	Q4ZAL8	Staphylococcus_virus	9.6e-110	78.6
WP_065354504.1\|2247389_2247860_+	hypothetical protein	NA	NA	NA	NA
WP_065354505.1\|2247822_2248056_-	hypothetical protein	NA	NA	NA	NA
WP_065354506.1\|2248069_2248285_-	transcriptional regulator	Q4ZA66	Staphylococcus_virus	3.3e-28	88.7
WP_065354507.1\|2248479_2249172_+	helix-turn-helix transcriptional regulator	A0A1J0MFC5	Staphylococcus_phage	2.9e-81	70.1
WP_065354508.1\|2249227_2249863_+	hypothetical protein	Q4ZD54	Staphylococcus_phage	6.4e-59	91.2
WP_065354509.1\|2249918_2250956_+\|integrase	site-specific integrase	Q4ZD55	Staphylococcus_phage	9.4e-193	99.1
WP_014614491.1\|2251940_2252885_-	DNA-binding protein WhiA	Q7AWZ3	Streptococcus_phage	3.5e-53	39.6
2250957:2250978	attR	NA	NA	NA	NA
WP_015728762.1\|2252931_2253927_-	YvcK family protein	A1IMD5	Streptococcus_phage	5.3e-52	43.0
WP_014614493.1\|2253928_2254837_-	RNase adapter RapZ	A0A0R8VB27	Thermobifida_phage	7.3e-08	33.6
WP_014614494.1\|2255442_2256375_-	thioredoxin-disulfide reductase	G3MA85	Bacillus_virus	3.2e-83	49.5

DBSCAN-SWA_11

2327845 : 2338668

Streptococcus_phage(14.29%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_037543783.1\|2327845_2329783_-	polyglycerol-phosphate lipoteichoic acid synthase LtaS	W6LM83	Streptococcus_phage	7.3e-106	37.5
WP_014614543.1\|2330127_2331132_-	biotin-dependent carboxyltransferase family protein	NA	NA	NA	NA
WP_037543786.1\|2331128_2331812_-	allophanate hydrolase subunit 1	NA	NA	NA	NA
WP_014614545.1\|2331822_2332032_-	hypothetical protein	NA	NA	NA	NA
WP_065354524.1\|2332040_2332655_-	aminotransferase class IV	NA	NA	NA	NA
WP_037543791.1\|2332651_2333800_-	anthranilate synthase component I family protein	A0A0B5J984	Pandoravirus	5.6e-29	44.8
WP_065354525.1\|2333783_2334377_-	aminodeoxychorismate/anthranilate synthase component II	A0A0P0IKJ1	Acinetobacter_phage	7.8e-35	41.4
WP_065354526.1\|2334637_2335306_+	7-cyano-7-deazaguanine synthase QueC	A0A2H4J8Q7	uncultured_Caudovirales_phage	2.6e-63	54.7
WP_063284910.1\|2335305_2335737_+	6-carboxytetrahydropterin synthase QueD	A0A2H4GYB3	Pseudomonas_phage	8.0e-05	30.7
WP_014614550.1\|2335729_2336443_+	7-carboxy-7-deazaguanine synthase QueE	A0A1U9WRB6	Streptococcus_virus	2.7e-50	41.8
WP_037543793.1\|2336590_2337190_+	hypothetical protein	NA	NA	NA	NA
WP_014614552.1\|2337260_2337515_+	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA
WP_014614553.1\|2337687_2338668_-	glycosyltransferase	A0A192Y8W7	Salmonella_phage	3.2e-65	42.4

DBSCAN-SWA_12

2438611 : 2511944

Staphylococcus_phage(61.67%)

head,portal,tRNA,plate,tail,protease,holin,terminase,capsid,integrase

attL 2438475:2438490|attR 2484644:2484659

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2438475:2438490	attL	NA	NA	NA	NA
WP_037543851.1\|2438611_2439163_-\|integrase	tyrosine-type recombinase/integrase	A3F636	Streptococcus_phage	5.4e-22	31.7
WP_014614653.1\|2439305_2439509_+	DUF1659 domain-containing protein	NA	NA	NA	NA
WP_014614654.1\|2439524_2439740_+	DUF2922 domain-containing protein	NA	NA	NA	NA
WP_015728682.1\|2440080_2440350_-	hypothetical protein	NA	NA	NA	NA
WP_063278866.1\|2440563_2441493_+	DMT family transporter	NA	NA	NA	NA
WP_014614657.1\|2442986_2443358_+	winged helix DNA-binding protein	NA	NA	NA	NA
WP_063278865.1\|2443568_2444285_-	hypothetical protein	NA	NA	NA	NA
WP_063278864.1\|2444373_2444877_-	hypothetical protein	NA	NA	NA	NA
WP_014614660.1\|2444967_2445768_-	alpha/beta hydrolase	NA	NA	NA	NA
WP_014614661.1\|2445767_2446472_-	HAD family hydrolase	NA	NA	NA	NA
WP_064485060.1\|2446528_2447479_-	iron ABC transporter permease	NA	NA	NA	NA
WP_063278862.1\|2447468_2448350_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_014614664.1\|2448923_2449145_+	twin-arginine translocase TatA/TatE family subunit	NA	NA	NA	NA
WP_081247727.1\|2449173_2449845_+	twin-arginine translocase subunit TatC	NA	NA	NA	NA
WP_063278860.1\|2449887_2451546_-\|tRNA	arginine--tRNA ligase	NA	NA	NA	NA
WP_014614667.1\|2451547_2451958_-	DUF1934 family protein	NA	NA	NA	NA
WP_015728676.1\|2452765_2454064_-	HD domain-containing protein	A0A1V0SGM3	Hokovirus	6.7e-23	30.6
WP_014614670.1\|2454086_2454566_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_014614671.1\|2454975_2455311_-	DUF1450 domain-containing protein	NA	NA	NA	NA
WP_065354556.1\|2455932_2456649_+\|protease	trypsin-like serine protease	NA	NA	NA	NA
WP_065354557.1\|2457869_2458592_+\|protease	trypsin-like serine protease	NA	NA	NA	NA
WP_065354558.1\|2458924_2459632_+	trypsin-like peptidase domain-containing protein	NA	NA	NA	NA
WP_065354559.1\|2459989_2460745_+\|protease	trypsin-like serine protease	NA	NA	NA	NA
WP_063284873.1\|2461108_2461867_+	trypsin-like peptidase domain-containing protein	NA	NA	NA	NA
WP_014614677.1\|2462074_2462785_+	trypsin-like peptidase domain-containing protein	NA	NA	NA	NA
WP_065354560.1\|2463934_2464654_+	trypsin-like peptidase domain-containing protein	NA	NA	NA	NA
WP_014614679.1\|2464859_2465570_+	trypsin-like peptidase domain-containing protein	NA	NA	NA	NA
WP_015728666.1\|2465713_2466319_-	DUF2812 domain-containing protein	NA	NA	NA	NA
WP_015728665.1\|2466302_2466635_-	PadR family transcriptional regulator	NA	NA	NA	NA
WP_065354561.1\|2467747_2468083_-	hypothetical protein	NA	NA	NA	NA
WP_065354562.1\|2468100_2468454_-	hypothetical protein	A0A2H4J1J0	uncultured_Caudovirales_phage	3.8e-05	50.9
WP_082239529.1\|2468583_2468736_+	ribbon-helix-helix protein, CopG family	NA	NA	NA	NA
WP_065354563.1\|2468732_2469083_+	hypothetical protein	NA	NA	NA	NA
WP_065354564.1\|2469128_2470517_-	CHAP domain-containing protein	A0A1D6Z273	Staphylococcus_phage	7.7e-150	58.4
WP_065354565.1\|2470530_2470836_-\|holin	phage holin	A0A068A215	Staphylococcus_phage	2.4e-24	60.2
WP_065354566.1\|2470901_2471045_-	XkdX family protein	H9A0Q0	Staphylococcus_phage	4.8e-15	82.2
WP_065354567.1\|2471037_2471364_-	hypothetical protein	H9A136	Staphylococcus_phage	8.7e-20	47.0
WP_065354568.1\|2471376_2472438_-\|plate	BppU family phage baseplate upper protein	Q4ZCC6	Staphylococcus_virus	1.4e-42	55.6
WP_065354569.1\|2472446_2474333_-	CHAP domain-containing protein	Q4ZCC7	Staphylococcus_virus	5.0e-277	71.1
WP_096535957.1\|2474461_2474749_-	DUF2951 family protein	A0A1J0MFW4	Staphylococcus_phage	3.2e-42	96.8
WP_019166734.1\|2474799_2474949_-	XkdX family protein	NA	NA	NA	NA
WP_065354571.1\|2474950_2475376_-	hypothetical protein	NA	NA	NA	NA
WP_065354572.1\|2475375_2476875_-\|plate	BppU family phage baseplate upper protein	A0A2I6PES7	Staphylococcus_phage	3.2e-32	28.9
WP_065354105.1\|2478582_2479869_-	group II intron reverse transcriptase/maturase	A0A0U4J920	Pseudomonas_phage	4.5e-27	28.8
WP_065354575.1\|2480702_2482205_-	hypothetical protein	Q4ZCD5	Staphylococcus_virus	3.7e-206	70.6
WP_065354576.1\|2482213_2483128_-\|tail	phage tail protein	Q4ZCD7	Staphylococcus_virus	3.6e-132	72.7
WP_065354577.1\|2483145_2486151_-\|terminase	terminase	Q4ZCD8	Staphylococcus_virus	2.2e-202	52.6
2484644:2484659	attR	NA	NA	NA	NA
WP_100004554.1\|2486153_2486438_-	hypothetical protein	Q4ZCD9	Staphylococcus_virus	1.9e-31	72.5
WP_065354578.1\|2486503_2487001_-	hypothetical protein	Q4ZCE0	Staphylococcus_virus	2.6e-68	78.8
WP_065354579.1\|2487061_2487658_-\|tail	phage tail protein	Q4ZCE1	Staphylococcus_virus	4.1e-76	77.4
WP_065354580.1\|2487662_2488085_-	DUF3168 domain-containing protein	Q4ZCE2	Staphylococcus_virus	9.1e-62	81.4
WP_065354581.1\|2488095_2488509_-	HK97 gp10 family phage protein	Q4ZCE4	Staphylococcus_virus	2.0e-66	86.1
WP_019167201.1\|2488831_2489128_-\|head,tail	phage head-tail adapter protein	Q4ZCE6	Staphylococcus_virus	8.4e-38	76.5
WP_082239539.1\|2489127_2489412_-	Rho termination protein	Q4ZCE7	Staphylococcus_virus	2.0e-25	66.3
WP_065354582.1\|2489428_2490265_-\|capsid	N4-gp56 family major capsid protein	Q4ZBR5	Staphylococcus_phage	1.8e-133	90.7
WP_065354583.1\|2490285_2490879_-	hypothetical protein	Q4ZBR6	Staphylococcus_phage	9.8e-46	76.0
WP_065354584.1\|2491174_2492125_-\|capsid	minor capsid protein	A0A2H4JC26	uncultured_Caudovirales_phage	2.9e-140	77.2
WP_065354585.1\|2492093_2493512_-\|portal	phage portal protein	Q4ZC74	Staphylococcus_virus	3.2e-244	86.0
WP_065354586.1\|2493512_2494778_-\|terminase	PBSX family phage terminase large subunit	Q4ZC75	Staphylococcus_virus	1.3e-225	89.3
WP_065354587.1\|2494761_2495250_-\|terminase	terminase small subunit	Q4ZAI5	Staphylococcus_virus	1.3e-67	77.8
WP_065354588.1\|2495548_2495968_-	transcriptional regulator	I1W651	Staphylococcus_phage	1.1e-48	71.9
WP_158004123.1\|2495970_2496123_-	hypothetical protein	A0A1J0MFM4	Staphylococcus_phage	8.4e-10	72.3
WP_065354589.1\|2496122_2496293_-	transcriptional regulator	A0A1J0MFF2	Staphylococcus_phage	3.9e-08	61.8
WP_065354590.1\|2496308_2496497_-	DUF1381 domain-containing protein	A0A1J0MFZ5	Staphylococcus_phage	2.0e-24	91.9
WP_065354591.1\|2496496_2496697_-	hypothetical protein	NA	NA	NA	NA
WP_065354592.1\|2496877_2497417_-	dUTP pyrophosphatase	Q4ZD34	Staphylococcus_phage	4.0e-94	96.6
WP_015978034.1\|2497409_2497565_-	hypothetical protein	Q4ZD35	Staphylococcus_phage	1.6e-19	100.0
WP_157978122.1\|2497566_2497722_-	hypothetical protein	NA	NA	NA	NA
WP_065354064.1\|2497722_2498202_-	hypothetical protein	A0A1J0MFQ4	Staphylococcus_phage	1.2e-81	100.0
WP_065354485.1\|2498202_2498418_-	hypothetical protein	A0A1J0MFC2	Staphylococcus_phage	6.3e-35	97.2
WP_065354486.1\|2498417_2498801_-	hypothetical protein	A0A223LGW7	Staphylococcus_phage	4.4e-63	95.2
WP_065354593.1\|2498797_2499187_-	hypothetical protein	A0A1J0MFL6	Staphylococcus_phage	2.2e-38	66.9
WP_065354594.1\|2499186_2499537_-	hypothetical protein	Q4ZD40	Staphylococcus_phage	2.4e-44	74.1
WP_065354596.1\|2499738_2500191_-	DUF3310 domain-containing protein	A0A1J0MFT5	Staphylococcus_phage	1.1e-78	96.0
WP_065354597.1\|2500347_2500656_-	hypothetical protein	A0A223LH51	Staphylococcus_phage	2.6e-42	83.3
WP_065354491.1\|2500666_2500879_-	hypothetical protein	A0A1J0MFH2	Staphylococcus_phage	1.4e-26	85.3
WP_065354493.1\|2501284_2501503_-	hypothetical protein	A0A1J0MFB5	Staphylococcus_phage	2.3e-32	94.4
WP_065354056.1\|2501499_2502744_-	AAA family ATPase	A0A1J0MF36	Staphylococcus_phage	2.9e-233	99.8
WP_065354055.1\|2502736_2503084_-	hypothetical protein	A0A1J0MFD5	Staphylococcus_phage	2.9e-58	100.0
WP_137987007.1\|2503120_2503816_-	DnaD domain protein	A0A1J0MG54	Staphylococcus_phage	7.3e-109	94.8
WP_065354598.1\|2503808_2504483_-	hypothetical protein	A0A1J0MFS2	Staphylococcus_phage	4.9e-118	90.2
WP_015728806.1\|2504491_2504686_-	hypothetical protein	A0A1J0MFQ8	Staphylococcus_phage	3.2e-30	100.0
WP_065354599.1\|2504666_2505104_-	single-stranded DNA-binding protein	A0A1J0MFL8	Staphylococcus_phage	4.1e-73	97.9
WP_065354600.1\|2505096_2505741_-	ERF family protein	D2JGK1	Staphylococcus_phage	4.9e-107	93.3
WP_065354601.1\|2505744_2506293_-	hypothetical protein	A0A0H3U480	Staphylococcus_phage	4.1e-54	58.7
WP_065354602.1\|2506285_2506540_-	hypothetical protein	A0A1J0MFA5	Staphylococcus_phage	1.0e-31	81.0
WP_019168341.1\|2506551_2506812_-	DUF1108 family protein	A0A223LGR0	Staphylococcus_phage	9.6e-38	89.5
WP_065354603.1\|2506881_2507070_-	hypothetical protein	A0A1J0MFC8	Staphylococcus_phage	4.4e-16	72.6
WP_065354604.1\|2507185_2507899_-	antirepressor	H9A0Y1	Staphylococcus_phage	9.0e-70	60.6
WP_065354605.1\|2507929_2508373_-	hypothetical protein	Q6R853	Staphylococcus_virus	7.3e-54	71.4
WP_019165844.1\|2508385_2508625_-	helix-turn-helix transcriptional regulator	Q9MBT3	Staphylococcus_prophage	3.2e-32	89.2
WP_065354606.1\|2508795_2509494_+	helix-turn-helix transcriptional regulator	A0A1J0MFC5	Staphylococcus_phage	2.2e-81	67.9
WP_065354607.1\|2509685_2510501_+	DUF5067 domain-containing protein	A0A1W6JND4	Staphylococcus_phage	4.3e-52	59.9
WP_065354608.1\|2510558_2511944_+	recombinase family protein	Q4ZA74	Staphylococcus_virus	9.1e-151	57.3

DBSCAN-SWA_13

2771544 : 2782945

Staphylococcus_phage(45.45%)

integrase

attL 2769628:2769644|attR 2779914:2779930

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2769628:2769644	attL	NA	NA	NA	NA
WP_051144710.1\|2771544_2772057_-	hypothetical protein	Q4ZE87	Staphylococcus_phage	1.7e-22	37.4
WP_037541910.1\|2772208_2772553_-	hypothetical protein	Q4ZE66	Staphylococcus_phage	2.0e-27	54.0
WP_037541913.1\|2773159_2774815_-	DUF927 domain-containing protein	Q4ZE73	Staphylococcus_phage	5.6e-131	43.0
WP_037541915.1\|2774819_2775689_-	hypothetical protein	A0A1W6JQL5	Staphylococcus_phage	4.6e-44	37.7
WP_037541917.1\|2775703_2776024_-	DUF1474 family protein	A0A2H4JB50	uncultured_Caudovirales_phage	2.3e-25	56.3
WP_037541919.1\|2776027_2776375_-	hypothetical protein	A0A1W6JQI7	Staphylococcus_phage	6.4e-29	53.2
WP_019168679.1\|2776438_2777080_-	phage repressor protein	A0A2H4JB17	uncultured_Caudovirales_phage	1.1e-90	78.4
WP_154800901.1\|2777083_2777236_-	hypothetical protein	NA	NA	NA	NA
WP_037541924.1\|2777309_2777570_-	hypothetical protein	NA	NA	NA	NA
WP_019168676.1\|2777547_2777787_-	helix-turn-helix transcriptional regulator	A0A2H4JFN1	uncultured_Caudovirales_phage	1.8e-06	49.0
WP_065354647.1\|2777966_2778593_+	helix-turn-helix transcriptional regulator	A0A2H4JGT9	uncultured_Caudovirales_phage	3.6e-14	29.6
WP_037541925.1\|2778684_2779821_+\|integrase	site-specific integrase	A0A1S5S7K9	Streptococcus_phage	4.0e-72	39.2
WP_014614896.1\|2779914_2781456_-	glutamine-hydrolyzing GMP synthase	NA	NA	NA	NA
2779914:2779930	attR	NA	NA	NA	NA
WP_014614897.1\|2781478_2782945_-	IMP dehydrogenase	A0A1V0SHK8	Klosneuvirus	6.1e-97	41.4

Anti-CRISPR protein detection

Acr_ID: NZ_CP016072.1|WP_065354326.1|1677535_1677892_+|hypothetical-protein

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Acr_ID: NZ_CP016072.1|WP_065354465.1|2210654_2211005_+|hypothetical-protein

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Acr_ID: NZ_CP016072.1|WP_065354563.1|2468732_2469083_+|hypothetical-protein

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Acr ID

Acr position

Acr size

Homology with known anti

Neighbor HTH/AcRanker

Neighbor Aca

In prophage

Protospacer in prophage

NZ_CP016072.1|WP_065354326.1|1677535_1677892_+|hypothetical-protein

1677535_1677892_+

118 aa aa

hit_Aca_id	identity	query_coverage	hit_coverage
gnl\|BL_ORD_ID\|62	0.5526315789473685	0.9745762711864406	0.991304347826087

1675853-1742067

NZ_CP016072.1|WP_065354465.1|2210654_2211005_+|hypothetical-protein

2210654_2211005_+

116 aa aa

hit_Aca_id	identity	query_coverage	hit_coverage
gnl\|BL_ORD_ID\|62	0.7982456140350878	0.9913793103448276	0.991304347826087

2208094-2256375

NZ_CP016072.1|WP_065354563.1|2468732_2469083_+|hypothetical-protein

2468732_2469083_+

116 aa aa

hit_Aca_id	identity	query_coverage	hit_coverage
gnl\|BL_ORD_ID\|62	0.7719298245614035	0.9913793103448276	0.991304347826087

2438611-2511944

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP016072

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

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