CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP016210	Azoarcus olearius strain DQS-4 chromosome, complete genome	2 crisprs	csa3,WYL,cas3,DEDDh,DinG	0	0	5	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP016210_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP016210_1

600830-601068

Orphan

Consensus_repeat	Method
GCGCACCTCGGGGTCGGGGTCGT	CRISPRCasFinder

3 spacers

The CRISPR arrays of NZ_CP016210_1

>merge|NZ_CP016210|1|600830-601068|CRISPRCasFinder
GCGCACCTCGGGGTCGGGGTCGTGGGCGAGCTTGCCGAGCGCGAAGGCCGGCAGGCGGCGGGCGATTTCCTTGCGCACCGCGGGGTCGGGGTCGTCGAGCAGCTGCGGCAGCTGGCCGTGCGGCAGGCGGCGGGCGACATGGATGCGCACGCCGTAGTCGGGGTCGCGGATCAGGCGGGCGAGATCGGCCGGCTGCATGCGGGTGGCCACGGTGATGCGCACCTCGCGATCGGGGTCGC

>NZ_CP016210|1|1|600830-601068|CRISPRCasFinder
GCGCACCTCGGGGTCGGGGTCGT	GGGCGAGCTTGCCGAGCGCGAAGGCCGGCAGGCGGCGGGCGATTTCCTT
GCGCACCGCGGGGTCGGGGTCGT	CGAGCAGCTGCGGCAGCTGGCCGTGCGGCAGGCGGCGGGCGACATGGAT
GCGCACGCCGTAGTCGGGGTCGC	GGATCAGGCGGGCGAGATCGGCCGGCTGCATGCGGGTGGCCACGGTGAT
GCGCACCTCGCGATCGGGGTCGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP016210.1\|WP_084018185.1\|611792_613904_+\|DDE-type-integrase/transposase/recombinase	unknown	unknown	gnl\|CDD\|378147
NZ_CP016210.1\|WP_084018181.1\|609848_610688_-\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|238045
NZ_CP016210.1\|WP_011764293.1\|595144_595630_-\|NifX-associated-nitrogen-fixation-protein	unknown	unknown	gnl\|CDD\|367430
NZ_CP016210.1\|WP_065339591.1\|608228_609290_-\|PHB-depolymerase-family-esterase	unknown	unknown	gnl\|CDD\|226040
NZ_CP016210.1\|WP_065339593.1\|611304_611796_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP016210.1\|WP_148268797.1\|596052_596481_-\|nitrogen-fixation-protein-NifX	unknown	unknown	gnl\|CDD\|238433
NZ_CP016210.1\|WP_157108132.1\|604981_605299_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|237030
NZ_CP016210.1\|WP_084018179.1\|595648_596056_-\|SoxR-reducing-system-RseC-family-protein	unknown	unknown	gnl\|CDD\|377263
NZ_CP016210.1\|WP_011764304.1\|607590_608226_-\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|225107
NZ_CP016210.1\|WP_011764302.1\|605355_606024_-\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|377516
NZ_CP016210.1\|WP_065339588.1\|601772_604985_+\|EAL-domain-containing-protein	unknown	unknown	gnl\|CDD\|236645
NZ_CP016210.1\|WP_065341620.1\|596497_597892_-\|nitrogenase-iron-molybdenum-cofactor-biosynthesis-protein-NifN	unknown	unknown	gnl\|CDD\|237722
NZ_CP016210.1\|WP_084018183.1\|610863_611172_+\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|372675
NZ_CP016210.1\|WP_065339590.1\|606190_607585_+\|CHASE3-domain-containing-protein	unknown	unknown	gnl\|CDD\|226951
NZ_CP016210.1\|WP_011764290.1\|594088_594481_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP016210.1\|WP_011764289.1\|593473_593797_-\|iron-sulfur-cluster-assembly-accessory-protein	unknown	unknown	gnl\|CDD\|272875
NZ_CP016210.1\|WP_011764297.1\|597902_599405_-\|nitrogenase-iron-molybdenum-cofactor-biosynthesis-protein-NifE	unknown	unknown	gnl\|CDD\|188126
NZ_CP016210.1\|WP_065339587.1\|599593_600595_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP016210.1\|WP_011764291.1\|594490_594778_-\|ferredoxin-III,-nif-specific	unknown	unknown	gnl\|CDD\|274356
NZ_CP016210.1\|WP_011764292.1\|594918_595134_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|377451

Protein	Function_ID	Function_description	E-value
NZ_CP016210.1\|WP_084018185.1\|611792_613904_+\|DDE-type-integrase/transposase/recombinase	gnl\|CDD\|378147	pfam09299, Mu-transpos_C, Mu transposase, C-terminal. Members of this family are found in various prokaryotic integrases and transposases. They adopt a beta-barrel structure with Greek-key topology.	1.01722e-19
NZ_CP016210.1\|WP_084018181.1\|609848_610688_-\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	1.55527e-05
NZ_CP016210.1\|WP_011764293.1\|595144_595630_-\|NifX-associated-nitrogen-fixation-protein	gnl\|CDD\|367430	pfam03270, DUF269, Protein of unknown function, DUF269. Members of this family may be involved in nitrogen fixation, since they are found within nitrogen fixation operons.	3.0832e-72
NZ_CP016210.1\|WP_065339591.1\|608228_609290_-\|PHB-depolymerase-family-esterase	gnl\|CDD\|226040	COG3509, LpqC, Poly(3-hydroxybutyrate) depolymerase [Secondary metabolites biosynthesis, transport, and catabolism].	2.55587e-35
NZ_CP016210.1\|WP_148268797.1\|596052_596481_-\|nitrogen-fixation-protein-NifX	gnl\|CDD\|238433	cd00853, NifX, NifX belongs to a family of iron-molybdenum cluster-binding proteins that includes NifB, and NifY, all of which are involved in the synthesis of an iron-molybdenum cofactor (FeMo-co) that binds the active site of the dinitrogenase enzyme. The protein is part of the nitrogen fixation gene cluster in nitrogen-fixing bacteria and has sequence similarity to other members of the cluster.	9.51619e-36
NZ_CP016210.1\|WP_157108132.1\|604981_605299_-\|hypothetical-protein	gnl\|CDD\|237030	PRK12270, kgd, multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit.	3.31594e-10
NZ_CP016210.1\|WP_084018179.1\|595648_596056_-\|SoxR-reducing-system-RseC-family-protein	gnl\|CDD\|377263	pfam04246, RseC_MucC, Positive regulator of sigma(E), RseC/MucC. This bacterial family of integral membrane proteins represents a positive regulator of the sigma(E) transcription factor, namely RseC/MucC. The sigma(E) transcription factor is up-regulated by cell envelope protein misfolding, and regulates the expression of genes that are collectively termed ECF (devoted to Extra-Cellular Functions). In Pseudomonas aeruginosa, de-repression of sigma(E) is associated with the alginate-overproducing phenotype characteristic of chronic respiratory tract colonisation in cystic fibrosis patients. The mechanism by which RseC/MucC positively regulates the sigma(E) transcription factor is unknown. RseC is also thought to have a role in thiamine biosynthesis in Salmonella typhimurium. In addition, this family also includes an N-terminal part of RnfF, a Rhodobacter capsulatus protein, of unknown function, that is essential for nitrogen fixation. This protein also contains an ApbE domain pfam02424, which is itself involved in thiamine biosynthesis.	7.57793e-23
NZ_CP016210.1\|WP_011764304.1\|607590_608226_-\|response-regulator-transcription-factor	gnl\|CDD\|225107	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription].	2.54293e-66
NZ_CP016210.1\|WP_065339588.1\|601772_604985_+\|EAL-domain-containing-protein	gnl\|CDD\|236645	PRK10060, PRK10060, cyclic di-GMP phosphodiesterase.	3.06442e-132
NZ_CP016210.1\|WP_065341620.1\|596497_597892_-\|nitrogenase-iron-molybdenum-cofactor-biosynthesis-protein-NifN	gnl\|CDD\|237722	PRK14476, PRK14476, nitrogenase molybdenum-cofactor biosynthesis protein NifN; Provisional.	0
NZ_CP016210.1\|WP_084018183.1\|610863_611172_+\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|372675	pfam13693, HTH_35, Winged helix-turn-helix DNA-binding.	5.04779e-26
NZ_CP016210.1\|WP_065339590.1\|606190_607585_+\|CHASE3-domain-containing-protein	gnl\|CDD\|226951	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms].	6.29108e-49
NZ_CP016210.1\|WP_011764289.1\|593473_593797_-\|iron-sulfur-cluster-assembly-accessory-protein	gnl\|CDD\|272875	TIGR00049, Uncharacterized_protein_in_nifU_5'region, Iron-sulfur cluster assembly accessory protein. Proteins in this subfamily appear to be associated with the process of FeS-cluster assembly. The HesB proteins are associated with the nif gene cluster and the Rhizobium gene IscN has been shown to be required for nitrogen fixation. Nitrogenase includes multiple FeS clusters and many genes for their assembly. The E. coli SufA protein is associated with SufS, a NifS homolog and SufD which are involved in the FeS cluster assembly of the FhnF protein. The Azotobacter protein IscA (homologs of which are also found in E.coli) is associated which IscS, another NifS homolog and IscU, a nifU homolog as well as other factors consistent with a role in FeS cluster chemistry. A homolog from Geobacter contains a selenocysteine in place of an otherwise invariant cysteine, further suggesting a role in redox chemistry. [Biosynthesis of cofactors, prosthetic groups, and carriers, Other].	3.24448e-49
NZ_CP016210.1\|WP_011764297.1\|597902_599405_-\|nitrogenase-iron-molybdenum-cofactor-biosynthesis-protein-NifE	gnl\|CDD\|188126	TIGR01283, nifE, nitrogenase molybdenum-iron cofactor biosynthesis protein NifE. This protein is part of the NifEN complex involved in biosynthesis of the molybdenum-iron cofactor used by the homologous NifDK complex of nitrogenase. In a few species, the protein is found as a NifEN fusion protein. [Biosynthesis of cofactors, prosthetic groups, and carriers, Other, Central intermediary metabolism, Nitrogen fixation].	0
NZ_CP016210.1\|WP_011764302.1\|605355_606024_-\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|377516	pfam05494, MlaC, MlaC protein. MlaC is a component of the Mla pathway, an ABC transport system that functions to maintain the asymmetry of the outer membrane. This family of proteins is involved in toluene tolerance, which is mediated by increased cell membrane rigidity resulting from changes in fatty acid and phospholipid compositions, exclusion of toluene from the cell membrane, and removal of intracellular toluene by degradation. Many proteins are involved in these processes.	6.29522e-68
NZ_CP016210.1\|WP_011764291.1\|594490_594778_-\|ferredoxin-III,-nif-specific	gnl\|CDD\|274356	TIGR02936, fdxN_nitrog, ferredoxin III, nif-specific. Members of this family are homodimeric ferredoxins from nitrogen fixation regions of many nitrogen-fixing bacteria. As characterized in Rhodobacter capsulatus, these proteins are homodimeric, with two 4Fe-4S clusters bound per monomer. Although nif-specific, this protein family is not usiveral, as other nitrogenase systems may substitute flavodoxins, or different types of ferredoxin. [Central intermediary metabolism, Nitrogen fixation].	4.25767e-36
NZ_CP016210.1\|WP_011764292.1\|594918_595134_-\|hypothetical-protein	gnl\|CDD\|377451	pfam05082, Rop-like, Rop-like. This family contains several uncharacterized bacterial proteins. These proteins are found in nitrogen fixation operons so are likely to play some role in this process. They consist of two alpha helices which are joined by a four residue linker. The helices form an antiparallel bundle and cross towards their termini. They are likely to form a rod-like dimer. They have structural similarity to the regulatory protein Rop, pfam01815.	4.02961e-20

>NZ_CP016210.1|WP_065339587.1|599593_600595_-|hypothetical-protein
MTDATLDTSRDTAPTAAATSQNIPPSLSETLFKLCAETLPLPGHATLLDGLRKAGGPEFSPRVSRGGWFRPGRILDAEGNCVAEDALAWLEQAWLEADEDGDSFLERHAEAGYVLTLQQGVSHYLVAPWGKGAAEFLQLEIEELQEVSSHVLGAGGETPLTAEALLDRPPRAPAPTPLGEPRYLLRRLTDIAQFVGRIQEQAGKPAPILRFLADWQASSAGQQRRFCDHWVLALTEHLDRYHQTRYGATPVAAHAPVWTGIPANRGTVLARELHDFDRAAGYGFAWYFHMVGGRRVPRSIAPVIAADLADGMAYLPERDAALVLAWVREAYTA
>NZ_CP016210.1|WP_011764297.1|597902_599405_-|nitrogenase-iron-molybdenum-cofactor-biosynthesis-protein-NifE
MKASEVAALLDEPACTHNKKEKSGCARPKPGASAGGCAFDGAQIALLPIADVAHVVHGPIACAGNSWDNRGTKSSGPTLYKIGMTTDLSEQDIIMGKAEKRLFHGIKQAVERYNPPAVFVYNTCVPALIGDDIEAVCKAAAERWGVPVVPIDSAGFYGTKNLGNRIAGEAMVKYVIGTREPEPLPPEAIPPGIKVHNINLIGEYNIAGELWYLTPLFDELGIRILCTLSGDARFHEVQTMHRAEVNMLVCAKAMINVARKMEERYGIPWFEGSFYGITDTSAALREIARIIGDEDLIARTEAVIAREENRVRGELDVWRPRLEGKRVLLFTGGVKSWSVVSALQDLGMNVVASGTKKSTEEDKARILELMGDKTIMLNSEGARDLLNAVYELKADILIAGGRNLYTALKARLPFLDINQEREFGYAGYEGMKELVRQLALTLESPVWDAVRKPAPWTSKAMVIAGPELGDSPDADDGNDAHGHDHDHDHDHHHAPAGAAA
>NZ_CP016210.1|WP_065341620.1|596497_597892_-|nitrogenase-iron-molybdenum-cofactor-biosynthesis-protein-NifN
MAEIIRHPKALSVSPLKSSAPAGAALAFLGINRSMPIFHGSQGCTAFAKVFFVRHFREPVPLQTTAMDQVATVMNADGNVVQALATVCGKSKPSLVGLATTALSETQGTDIARLVKDFRADFPEFNHIPVAAVNTPDFAGCLETGYAAAVKGILDATVPHTAGTGIVGKRKKQVNLLLGSHLTPGDVEAIKEWLELFGLRPLAVPDLADSLDGHLISEDTIPVTLGGTPVSELATLGEAVATIVVGRSLKGAADLLAERTGVPDYRFDGLVGLEACDRFTQTLAEIAGVAVPEKLERHRAQLQDAMVDTHFMTGLRRVAIAADPDLLLQTATLFAGMGSEIVAAVSPIKTGSLTDVPGAPQVHVGDLEDLEDLARAAQAELVVANSHAAATADRLGVPLLRAGMPQYDLVGGYCKTWVGYRGTRQALFDIANLVLQHHDSIAPHRSRFKLDPQPAPAPAAAGGH
>NZ_CP016210.1|WP_148268797.1|596052_596481_-|nitrogen-fixation-protein-NifX
MDGIRVAFASTDRSTVNQHFGSTEAFAIFEVGQNSSTLVEVTEFLDTAQDGNENKLPAKIATLAGCAAVYCLACGASAVKQLLAAGVQPVRVEEGSVIDNLIGDIQGELASGPSGWLAKAVKARQPVDTTRFDEMEAEGWQE
>NZ_CP016210.1|WP_084018179.1|595648_596056_-|SoxR-reducing-system-RseC-family-protein
MMSRSGRVIAVKDDQLVVRFEGASACGSCRANKVCGSGSTTDLVLDGGCGSRVGDQVDVDVDAGTAFRALAVAYLLPVAGFLAGMAVASAGGLGDLGVAGISFAGLGLGLIASRRLGRHPSLQPVPRLAASEFND
>NZ_CP016210.1|WP_011764293.1|595144_595630_-|NifX-associated-nitrogen-fixation-protein
MITIDTNTAPAPVLTPELAETDFIKEMNRQTRALDSYGTYDGWPTDRVLAPYILTKEQRRQIPVVGDPDDVTISRVKAFHNAIAALIEKECGLMAVPMIHISHEGFGRALITVGKLVVLDRTLRDVHRFGFESFSKMKDEADKHLAVALEIVGKYSEVAGL
>NZ_CP016210.1|WP_011764292.1|594918_595134_-|hypothetical-protein
MTEEEIKELEKEVKKLKRISQEWASQLHDLVEDRLPAGYEEIHGISQSTYDACKAWADANKRLIAATAAAN
>NZ_CP016210.1|WP_011764291.1|594490_594778_-|ferredoxin-III,-nif-specific
MSDITGLTRGGATWVPQFVLTLNAKRCIGCGRCYKVCPRDVFELIERESDDLDEDLDENMMVMSVANALDCIGCAACSRVCPKNCHTHGPSPVQA
>NZ_CP016210.1|WP_011764290.1|594088_594481_-|hypothetical-protein
MGVISLILFHKQSTSGRLRFARFADTVVAARVEVEGDPEVVTPHPGALVAQAAGRLGLPAGELKVEPEFRERMLAPGGTASVWIAEFASIDPPFAAVEQAGGRFVLLTELQGIPDTERDVMRAVYEHVLG
>NZ_CP016210.1|WP_011764289.1|593473_593797_-|iron-sulfur-cluster-assembly-accessory-protein
MLNLTPTAIKAVSRFISSSADPVVGLRIHVQGGGCSGLQYGMKLEAEKAEDDVIVEMEGITLLVDPFSAPLLSGVTVDFVDSLTGSGFKFENPNATGGCACGQSFSA
>NZ_CP016210.1|WP_065339588.1|601772_604985_+|EAL-domain-containing-protein
MARAVHEGLRTRLSAVVIVIVAAVILPFVLSAAAYLERQAQDEARAQLVAFGTLVRDLVATHHDSVESSVARVADAMALHFDGIYARRGTRLLWQGEAVEGAGAELARFGDDVAGTIAGIALRSDAGFRSVLSTSGATLPAGRVVPLPADAVSALEAGRRWRGMLELAGARYLLELIPARDAAGATVGMYFVGVDLVREFARLRGRLREFTIGDSGYVFVLDATPGPTYGRFIVHPEQEGGNPLQDSDNAGRSVIAEMLERGDGVIAYGWRNPARGEIVSRPKLAAFASYPALGWVIGASSYEDEFGRGALVMRRAMLATAAVMALTLIVALYCAIGAMVVAPMLRLQRTLRTLSRGNETLVHSASEDELVRRICEVLVQVGDFRLACIAFDMPGQAPRIVATHGGGDVFRAALARADASHLAPAVGAIAERRTVLVDDLGAVPPALRAAAEAAGCRALIAYPLCEGERVLGALTIGAARPGDLDQAGTALLKELAEDLAFGIATQRTAVARREAEVALRLRERAIESSSDGVLIFALGDDGPRIRDVNPAAERILGMARALLVDAPAPALTVFAPGALAELGVALVCGRETHLEVEGERADGSPFWCECALAPVRAAGDAHVVCVVKDVTERVLYLRELERQAKYDGLTGLPNRYLLDDRLEQAIVAARRHERLLGVAFIDLDHFKVVNDNVGHRQGDELLRQAASRLAAVLRDGDTAARQGGDEFVVLLPDLGDERDAFRILGRLQAALAEPFRLDDRSFFVTCSIGVSLYPRDGGDGDTLLKHADIAMYQAKAAGRNVVRFFTAEMNIQVRDRLQLEGALRSALENGELHLAFQPQVDGGSGQVIGAEALLRWQHPELGAVPPVRFIPLAEETGLIGPIGEWVLRAACRQARQWEQAGRRLRIAVNVSARQFRSPDLPARIAEILDETGLPPALLELELTESMLMGDAEQAEEMLHRLKQLGVSLALDDFGTGYSSFAYLQRFPIDTLKIDQSFVRSMVAGVRGEAIVVAIIALAHSLGMRVIAEGVETPLQQRQLFEFGCDELQGYLFGRPVPAAEFPHAGRGATV
>NZ_CP016210.1|WP_157108132.1|604981_605299_-|hypothetical-protein
MMKARILLLSTLAAPLLLAACDRRDTPPAPSTPPAPTTSRDMAPPPPPPTTTTPSTPPAPTAPDSVPPPGSTTPPGNTPAEPPATTPPGGAPEAPATPGGSGSSR
>NZ_CP016210.1|WP_011764302.1|605355_606024_-|ABC-transporter-substrate-binding-protein
MTIRHPPVHAGAPPASVPRWLRQLAWLLVFATAAAHGQGAAPDELVRGVTDEVLTVLRQDKDLKAGDRARAIRLIDEKIAPHFDFARMTALAVGPPWRQASPPEREALTREFRTLLVRTYANALTAYRDQTVHFPPSPQAQGDDVVIRSQIRQSGAAPIGLDYRLRRGADGWKVFDVAVDSVSLVTSYRGSFAAELAKGGPQALIDTLREQNRRYEPERPPS
>NZ_CP016210.1|WP_065339590.1|606190_607585_+|CHASE3-domain-containing-protein
MGSTKPIAGERQLRVTHRARAALLAVGCALVVALVGASFWQAAAGLQALETMQLQAARTARLDSMLIQLVDAESGARGYLLSRNHDYLAPYLNSLATVEYTLDEIRQDVGPDPRDQDALARLTGLITLKLRVLADAVGGAGAGEEAPRRAGVSDGVRYMDTIRTTLAGLKSRMAAEGQALLEESTRHIGHTRAVAAVLALSALLLLGLLHAALRRELRLRAQLAGLLRDENARLEALVQARTADLSALASYLTRSQERERERIARELHDELGALLTAARMDAAALGGDMAPAHQARHARLLRTLDGGITLKRRIIGDLRPPLLQELGLVAALRVLAEELADSDGTAVSAELPDDEPALAPECALALFRIAQEALTNARRHAGARRVRLGLRVERGAVRLEVEDDGAGFDPAACGPGRHGLAGMRHRVQMFAGRFSVDSRAGAGTRIAAALPLDAARGTELALAA
>NZ_CP016210.1|WP_011764304.1|607590_608226_-|response-regulator-transcription-factor
MLHLAIVDDHAIVRAGFREMLATETDLHIVFEAATGEDALARVADTGCDLLLLDLSLPGQSGVDVLRTLRRRGDSTRVLVLTGFPEDRYAVAMIRLGADGYLCKNCERDELVQAIRTIAQGRRYLSARTAELLAGEIAGDGSGAAHEQLSERELQVFLRLAHGESVSAIADALHLSIKTVSTYRSRVLEKLDVTSNAELATYAIRHGLIVA
>NZ_CP016210.1|WP_065339591.1|608228_609290_-|PHB-depolymerase-family-esterase
MSRRTRKSPLGTAFQRTLRSLTRASVRAGTKALDQAARIAAEHARPPPGQGDWIAGQALGPAGVRRYYLFRPDGITRTQRVPLMVMLHGCGQTARSFALSTRMNALAARERFLVLYPEQDRRANPQGCWEWFGTATRTGHAEAATLLAAIEQVCLLYPVDRDAVGLTGISAGAGMAALLATLYPTRFRALVMHSGVPPGVAHSPATAMAAMHGRRTPDFATVGAQQWPPLLVIHGDADRIVASGNARAAVRLWAAAHGAREGETRRLQRGRRYPAVVTDYHAGRQLVASLYEVQGLGHAWSGGAQRQPFSDPAGPDASRLAWSFLQRQLRTAARSTPAPRTRARPAVLARPRS
>NZ_CP016210.1|WP_084018181.1|609848_610688_-|helix-turn-helix-transcriptional-regulator
MESEVPKKIGRPVPFLVPGFGTRVKAAADTLGTRKKAAEAMGVSPDMVQRYIREESAPGLEKLERLAGASGYRYRWLAYAEDPAQEAPPATAAWLDGATLGQRLRMVRAGVLCMDLPQFASLAGLTSGDVERMERDLEVPPASHLDLVVELSGVRKEWLECRVPPMFEVTDPLVRGVVDARLRRDSVRSTGTGESTRYLSALDRAVEGMPRSAALAGGAISVDLLVQVVTAIEQWQEANRSKVRISPAKKAALIAIAYAHFEGKKFEERDMAHIFRLVA
>NZ_CP016210.1|WP_084018183.1|610863_611172_+|helix-turn-helix-domain-containing-protein
MSKNTAVKKASQKDWHSADVVCALRKAGWSLARLAAHHGYASRSTLVHALHRKWPKGERLIAAAIGVEPETIWPSRYHADSTARSNVRSPRTAERSPERLAA
>NZ_CP016210.1|WP_065339593.1|611304_611796_+|hypothetical-protein
MTRRNWKRIRARSLVHAMELCIEHARVRHNRSMDRICDLMGEHSTSTVYKWLATGRLPAISIRPFEHACGATYVSEYLAASAHFLAVPMPSGRPAGETDVLNLQQGFADAVGLLIRFYKGEADAADTLAALTSTMNDMAWHHANVERAATPDLPLFGDDGAAE
>NZ_CP016210.1|WP_084018185.1|611792_613904_+|DDE-type-integrase/transposase/recombinase
MSPVREWYSAQDLAGLPGMPSTDRGVRIAAERQGWQGRKRPVGKGMEYAFSALPVDTRRALQAQQLELALTSVSTVAAPPPAAAASAGAVSLPAAPALADLTDRQRLERDARSGVIAAVRRLQDESGSSQEAALVTLLTTARAGQLDAALDRMLRLARDPRGRAGDGYPSVRTLKRWLSATDLAPKARRAAMTVPDWAKSFLCHYQQPQKPSVEAAYRAACEQWPAEGRPSIHQVRRFLQTLGTVTRERGRMGDRELKNIRPFVRRDFSALRPNDVWSADGHTFDAEVQHPLHGRPFRPEVTTIIDIATRRAVGWSVGLAESALGVVDAIRHAVERNGILAIFYVDNGSGFRNVEVGDEAVGLLGRLGATPSYSLPYNSQARGVIERFHKTVWVAGAKQLPAYMGAAMDREARLAQFKLTRKALKHGGAMPLMPWDLFVQWCEERIAEYNARAHRSLGNSSPDLVWAAHEAKGWKPDLLEPDELATLFRPRVVRTLARAEIRLFNNIYFARELEEFHGLEAHIAYDIHDASKVWVYAPDGRFICTADVNGNARHYFPVPVVEQARQKRAQGRLARVDTKREEILAELHGGAALPAPAAAQVVIAGRVIQPDAMLAQRAAIAQATEVAATPAVAPPDIPSIQPKSRGDRSPDDNYRDWLALDARIANGEEVSDADARWHRTYPNSAQYKAQAKKTATCAATRVA

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Crispr_ID: NZ_CP016210_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP016210_2

769653-769756

Orphan

Consensus_repeat	Method
CCGTGCAGCGGGCGGGGGCAGAAAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP016210_2

>merge|NZ_CP016210|2|769653-769756|CRISPRCasFinder
CCGTGCAGCGGGCGGGGGCAGAAAACCGCGATCGCCGCCGGGCCGTCCCAAGGCGATCGCGTGCCCCCTCGGGGGGCGACCGCGCAGCGGGCGGGGGCAGAAAA

>NZ_CP016210|2|2|769653-769756|CRISPRCasFinder
CCGTGCAGCGGGCGGGGGCAGAAAA	CCGCGATCGCCGCCGGGCCGTCCCAAGGCGATCGCGTGCCCCCTCGGGGGGCGA
CCGCGCAGCGGGCGGGGGCAGAAAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP016210.1\|WP_041643233.1\|765789_766098_+\|DUF485-domain-containing-protein	unknown	unknown	gnl\|CDD\|377315
NZ_CP016210.1\|WP_011764426.1\|782373_783234_+\|neutral-zinc-metallopeptidase	unknown	unknown	gnl\|CDD\|282131
NZ_CP016210.1\|WP_065339709.1\|783255_783732_-\|VOC-family-protein	unknown	unknown	gnl\|CDD\|372667
NZ_CP016210.1\|WP_011764417.1\|766097_767777_+\|cation-acetate-symporter	unknown	unknown	gnl\|CDD\|236495
NZ_CP016210.1\|WP_011764421.1\|772987_774001_+\|methylmalonyl-Co-A-mutase-associated-GTPase-MeaB	unknown	unknown	gnl\|CDD\|236515
NZ_CP016210.1\|WP_011764415.1\|764748_765531_-\|enoyl-CoA-hydratase/isomerase-family-protein	unknown	unknown	gnl\|CDD\|180424
NZ_CP016210.1\|WP_011764428.1\|784531_785263_-\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|223816
NZ_CP016210.1\|WP_065339705.1\|763781_764735_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176152
NZ_CP016210.1\|WP_065339707.1\|777929_780386_+\|EAL-domain-containing-protein	unknown	unknown	gnl\|CDD\|236645
NZ_CP016210.1\|WP_065339706.1\|767930_769226_+\|HlyC/CorC-family-transporter	unknown	unknown	gnl\|CDD\|224173
NZ_CP016210.1\|WP_011764419.1\|769757_770429_-\|GntR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224715
NZ_CP016210.1\|WP_011764422.1\|774066_775602_+\|acyl-CoA-carboxylase-subunit-beta	unknown	unknown	gnl\|CDD\|227136
NZ_CP016210.1\|WP_065339704.1\|763054_763747_+\|urea-ABC-transporter-ATP-binding-subunit-UrtE	unknown	unknown	gnl\|CDD\|274567
NZ_CP016210.1\|WP_011764412.1\|761767_762625_+\|urea-ABC-transporter-ATP-binding-protein-UrtD	unknown	unknown	gnl\|CDD\|274568
NZ_CP016210.1\|WP_011764409.1\|757229_758486_+\|urea-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|372603
NZ_CP016210.1\|WP_084018210.1\|780394_782278_+\|diguanylate-cyclase	unknown	unknown	gnl\|CDD\|143635
NZ_CP016210.1\|WP_065339703.1\|760577_761771_+\|urea-ABC-transporter-permease-subunit-UrtC	unknown	unknown	gnl\|CDD\|132449
NZ_CP016210.1\|WP_011764420.1\|770755_772921_+\|methylmalonyl-CoA-mutase	unknown	unknown	gnl\|CDD\|236508
NZ_CP016210.1\|WP_011764423.1\|775740_777747_+\|acetyl-CoA-carboxylase-biotin-carboxylase-subunit	unknown	unknown	gnl\|CDD\|227111
NZ_CP016210.1\|WP_065339702.1\|758752_760384_+\|urea-ABC-transporter-permease-subunit-UrtB	unknown	unknown	gnl\|CDD\|200272

Protein	Function_ID	Function_description	E-value
NZ_CP016210.1\|WP_041643233.1\|765789_766098_+\|DUF485-domain-containing-protein	gnl\|CDD\|377315	pfam04341, DUF485, Protein of unknown function, DUF485. This family includes several putative integral membrane proteins.	1.91692e-29
NZ_CP016210.1\|WP_011764426.1\|782373_783234_+\|neutral-zinc-metallopeptidase	gnl\|CDD\|282131	pfam04228, Zn_peptidase, Putative neutral zinc metallopeptidase. Members of this family have a predicted zinc binding motif characteristic of neutral zinc metallopeptidases (Prosite:PDOC00129).	8.14255e-134
NZ_CP016210.1\|WP_065339709.1\|783255_783732_-\|VOC-family-protein	gnl\|CDD\|372667	pfam13669, Glyoxalase_4, Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily.	6.27161e-38
NZ_CP016210.1\|WP_011764417.1\|766097_767777_+\|cation-acetate-symporter	gnl\|CDD\|236495	PRK09395, actP, cation/acetate symporter ActP.	0
NZ_CP016210.1\|WP_011764421.1\|772987_774001_+\|methylmalonyl-Co-A-mutase-associated-GTPase-MeaB	gnl\|CDD\|236515	PRK09435, PRK09435, methylmalonyl Co-A mutase-associated GTPase MeaB.	0
NZ_CP016210.1\|WP_011764415.1\|764748_765531_-\|enoyl-CoA-hydratase/isomerase-family-protein	gnl\|CDD\|180424	PRK06144, PRK06144, enoyl-CoA hydratase; Provisional.	6.53919e-67
NZ_CP016210.1\|WP_011764428.1\|784531_785263_-\|response-regulator-transcription-factor	gnl\|CDD\|223816	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription].	3.51985e-76
NZ_CP016210.1\|WP_065339705.1\|763781_764735_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|176152	cd08463, PBP2_DntR_like_4, The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator similar to DntR, which is involved in the catabolism of dinitrotoluene; contains the type 2 periplasmic binding fold. This CD includes an uncharacterized LysR-type transcriptional regulator similar to DntR, NahR, and LinR, which are involved in the degradation of aromatic compounds. The transcription of the genes encoding enzymes involved in such degradation is regulated and expression of these enzymes is enhanced by inducers, which are either an intermediate in the metabolic pathway or compounds to be degraded. This substrate-binding domain shows significant homology to the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	2.27058e-111
NZ_CP016210.1\|WP_065339707.1\|777929_780386_+\|EAL-domain-containing-protein	gnl\|CDD\|236645	PRK10060, PRK10060, cyclic di-GMP phosphodiesterase.	9.36045e-127
NZ_CP016210.1\|WP_065339706.1\|767930_769226_+\|HlyC/CorC-family-transporter	gnl\|CDD\|224173	COG1253, TlyC, Hemolysins and related proteins containing CBS domains [General function prediction only].	1.97653e-129
NZ_CP016210.1\|WP_011764419.1\|769757_770429_-\|GntR-family-transcriptional-regulator	gnl\|CDD\|224715	COG1802, GntR, Transcriptional regulators [Transcription].	7.57648e-50
NZ_CP016210.1\|WP_011764422.1\|774066_775602_+\|acyl-CoA-carboxylase-subunit-beta	gnl\|CDD\|227136	COG4799, COG4799, Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) [Lipid metabolism].	0
NZ_CP016210.1\|WP_065339704.1\|763054_763747_+\|urea-ABC-transporter-ATP-binding-subunit-UrtE	gnl\|CDD\|274567	TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. [Transport and binding proteins, Amino acids, peptides and amines].	7.94151e-144
NZ_CP016210.1\|WP_011764412.1\|761767_762625_+\|urea-ABC-transporter-ATP-binding-protein-UrtD	gnl\|CDD\|274568	TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. [Transport and binding proteins, Amino acids, peptides and amines].	4.3096e-158
NZ_CP016210.1\|WP_011764409.1\|757229_758486_+\|urea-ABC-transporter-substrate-binding-protein	gnl\|CDD\|372603	pfam13433, Peripla_BP_5, Periplasmic binding protein domain. This domain is found in a variety of bacterial periplasmic binding proteins.	0
NZ_CP016210.1\|WP_084018210.1\|780394_782278_+\|diguanylate-cyclase	gnl\|CDD\|143635	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain. Diguanylate-cyclase (DGC) or GGDEF domain: Originally named after a conserved residue pattern, and initially described as a domain of unknown function 1 (DUF1). This domain is widely present in bacteria, linked to a wide range of non-homologous domains in a variety of cell signaling proteins. The domain shows homology to the adenylyl cyclase catalytic domain. This correlates with the functional information available on two GGDEF-containing proteins, namely diguanylate cyclase and phosphodiesterase A of Acetobacter xylinum, both of which regulate the turnover of cyclic diguanosine monophosphate. Together with the EAL domain, GGDEF might be involved in regulating cell surface adhesion in bacteria.	1.08628e-63
NZ_CP016210.1\|WP_065339703.1\|760577_761771_+\|urea-ABC-transporter-permease-subunit-UrtC	gnl\|CDD\|132449	TIGR03408, urea_trans_UrtC, urea ABC transporter, permease protein UrtC. Members of this protein family are ABC transporter permease proteins associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. [Transport and binding proteins, Amino acids, peptides and amines].	5.59703e-159
NZ_CP016210.1\|WP_011764420.1\|770755_772921_+\|methylmalonyl-CoA-mutase	gnl\|CDD\|236508	PRK09426, PRK09426, methylmalonyl-CoA mutase; Reviewed.	0
NZ_CP016210.1\|WP_011764423.1\|775740_777747_+\|acetyl-CoA-carboxylase-biotin-carboxylase-subunit	gnl\|CDD\|227111	COG4770, COG4770, Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism].	0
NZ_CP016210.1\|WP_065339702.1\|758752_760384_+\|urea-ABC-transporter-permease-subunit-UrtB	gnl\|CDD\|200272	TIGR03409, urea_trans_UrtB, urea ABC transporter, permease protein UrtB. Members of this protein family are ABC transporter permease proteins associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. [Transport and binding proteins, Amino acids, peptides and amines].	1.21059e-143

>NZ_CP016210.1|WP_065339706.1|767930_769226_+|HlyC/CorC-family-transporter
MALLNHLLLILLLIAVSAFFSLAEISLAAARKIKLQQLAEEGVADARRVLALQESPGSFFTVVQIALNAVAILGGIVGEQALSPYVESALRPFYAGPALGTVSFVIAFVFVTSMFVLLADLMPKRLAMVKPEAVAMRVVRPIQASMWLFAPLVWLFNSLADRLFGLFGVPSARADDITSDDILAMAEAGTRAGALLEQEQNLIRNVFELDARIVPSAMTSRDSVVYFTLGEAEDSIRRKMAAHPHGKFPVCESGIDDVIGYVDAKDLFRRILQGQDLSLRTQPIVRKVLMLPDTLTLFEALERFRDAKEDFALVISEYALVVGLLTLQDVMNTVMGELGSPYQEELIVRRDDCSWLIDGVTPIEDVMQALEIEVFEGFENYETIAGFLMYRLRKVPKRTDFVVYAGYKFEVVDIDNYRIDQVLVTREPAAA
>NZ_CP016210.1|WP_011764417.1|766097_767777_+|cation-acetate-symporter
MNASRLSRLALGLASLPLSAAALAAGPAMEAAQKQPLNLHAIGMFFVFVLMTLGITYWAASRTKSASDFYTAGGGITGFQNGLAIAGDYMSAATLLGLTAMMYAQGVDAYIYMIAFFVGWPIILFLMAERLRNLGKFTFADITAYRLDQGKVRTMAAVSSLTVVCFYLVAQMVGAGQLIKLLFGLDYTVALFVVGALMMVYVTFGGMVATTWVQIIKACMLLLGGTTVMLLALSQFGFSFEALATRAMEVHKLGPKLFNPGSLLADPVTAISLGLGLMFGTAGLPHILMRFFTVTDAKEARKSVLYASGIIAYFFNVIALMGLAAILIVGQNPQYFEGGDLAGKIVGGGNMVAMHLAHAVGGNLLLGFLSAVAFATILAVVAGLALAGASAISHDIYARVIMKGRASETTEIRVSKFATIGLGVVAVLLGIVFEKMNVAFMVALAFGVAASANFPVLILSMYWKGLTTRGALAGGYLGLFSAVTFVVLSKSVWVDVLGNAAPIFPWTQPALFSMPLAFLATIVVSLLDSSHKARSEREAFEDQYVRAQTGVGAASAAAH
>NZ_CP016210.1|WP_041643233.1|765789_766098_+|DUF485-domain-containing-protein
MYAHIRRNPRFAELVAKRTRFATLLAAIVLVVFYGFVLVVAFAPQIVGQRLSEGSNLTIGIVAGLFQFIFFWVLTFVYVRRANGEFDAINTEIVRAAWQEEK
>NZ_CP016210.1|WP_011764415.1|764748_765531_-|enoyl-CoA-hydratase/isomerase-family-protein
MNGQILVDRGDAVATVSLSNPGKLNAVNAGMWRQLRAAFAELGADPGVRCIVLRGAGDEAFAAGGDIEEFRTVRATVDDALHYHEELVAAALNAIRDCPVPTVAAIRGACVGGGLEIAGCCDLRIAGASSRFGAPINKLGFSMYPGEMAGLLALVGPAVVLEILLEGRILDAAEALQKGLLSRVVDDANVFDEAAACAARIAAGAPLVARWHKQWAKRLQRPEPLSEAERRAAFDFLATEDYREGLEAFLAKRKPVFKGR
>NZ_CP016210.1|WP_065339705.1|763781_764735_+|LysR-family-transcriptional-regulator
MANGCTWDSLDAHLLRVLHVLLTEGSVSRAARRLNQSQPAVSTALKRLRDITGDKLLVRSRTGMTPTERGAELLEPVRIALEQMERIAAGPEGFEPANSRRVFNIATPDYLNALMLGEIVADIHRQAPGAQVAFHSMTQTFDYPRALESGELDLVIGNWPNPPEHLRTAPLFEDRMVVMMRTGHPLAGAPLTLSAWLAAEHVVPTSYSVGQRGVVDVYLARERLRRNVVAHVPYFHMAPYMVLQSDLVFTAPARFASHYADFLPMAVVDAPAELPRMAYYLLWHDRSQHSAECRWLRERIIRAARPDPAPAPLRRVA
>NZ_CP016210.1|WP_065339704.1|763054_763747_+|urea-ABC-transporter-ATP-binding-subunit-UrtE
MLKVDNLNQYYGGSHILRGLSFEVPVGKVTTLLGRNGVGKTTLLKTLMGLVPAASGTIHFGAQDITRAPSYNRVRAGIGYVPQGREIFPRLSVEENLLMGLATQPRGSSIPQRIFEMFPVLKQMMGRRGGDLSGGQQQQLAIGRALAFGPKLLILDEPTEGIQPSIIKDIERAIRSLAATGEMAILLVEQYYDFARALSDQYLVMERGEIVMRGEGANMDADGVREALAV
>NZ_CP016210.1|WP_011764412.1|761767_762625_+|urea-ABC-transporter-ATP-binding-protein-UrtD
MTETTELERRARAFAEAGGRENWEGAAATGHVATGELDLSHNVILYLDDITVSFDGFRALNKLSLTIDAGELRCIIGPNGAGKTTMMDVITGKTRPDEGKAFFGQTLDLTRMTEPEIAHAGIGRKFQKPTIFENHSAFENLELAMKADKRVRRTLFASLFDDERDRIADVLKQIRLDKFADRSAGLLSHGQKQWLEIGMLLMQEPKLLLLDEPVAGMTDDETERTAELFVSLAGKHSLMVVEHDMAFVEALGGKVTVLCEGSVLAEGDLATVQADSRVIEVYLGR
>NZ_CP016210.1|WP_065339703.1|760577_761771_+|urea-ABC-transporter-permease-subunit-UrtC
MRTPFTVRLFQSMPKTGWVALAIFAVVACVGVPVAHLALPEGHALHLSAYTVSLLGKILCYMVVAVAMDLIWGYAGILSLGHGLFFALGGYAFGMYLMRQIGRDGSYQSDLPDFMVFLDWKELPWYWAGSDSFLWALFLAMALPGLVAFVFGYFAFRSRIKGVYFSIITQALTYAAMLLFFRNETGFGGNNGFTDFKRILGYSITSPEMRATLFALSALLLIACLVLGRYLVSSRFGRVLAAIRDAESRVMFIGYNPLHYKLFMWTLSAVLCGLAGALYVPQVGIINPSEMSPANSIEIAVWVAVGGRGTLVGAVLGAGIVNLAKSFFTVTVPEYWPFFLGFLFIAVTLYLPDGVVGLWRKLRARKGPDSAAAAPAVTAAPVGETAPETTVAKGATA
>NZ_CP016210.1|WP_065339702.1|758752_760384_+|urea-ABC-transporter-permease-subunit-UrtB
MEPAMNRLLLRLALLFASLACLALPARAALDPALVAGFAGDFNSRVAAIEALGVEGSAAARALLDAVEAGNVGTAADKVVVIDGDAVKDAASGEALQIAADEVETITVNNRIRRALATAHAALALSAESGADRLAAANTLTENTSESLLPLFERTLAGEKDEAVRGVLSRAVARVNLGSADAAKRLKAAEALGESSDPAVKNMLAALLEKRGEGKDASWAEPDAEVRAAAEASIKAIDRRIATAQAVGTVFSGLSLGSILLLAALGLAITYGVMGIINMAHGELLMVGAYATFLVQGLFRSYLPAYLDWYVVAAIPVAFFAAALVGVAMERLVLRHLYGRPLESLLATWGLSLVLIQAARVVFGPQNLELANPGWMSGGMELAAGVVLPYNRIVIIGFAVFVLVLIWLMMQKTRLGMFVRAVTQNRPMAGCVGVPTARVDTLAFAIGSGVAGLGGLALSQIANVGPAMGQGYIVDAFMVVVLGGVGQLAGAVWAALGLGIVAKFLEGWAGAVIAKILVLVFIIVFIQKRPQGIFALKGRFADS
>NZ_CP016210.1|WP_011764409.1|757229_758486_+|urea-ABC-transporter-substrate-binding-protein
MQTRRSFIKALALSASIAAIGAPFGAHAADTIKVGILHSLSGTMAISETALKNVALMTIEEINAKGGVMGKKLEPVVVDPASNWPLFAEKARQLVAQDKVAAVFGCWTSVSRKSVNPVFKELNGLLFYPVQYEGEELEKNVFYTGAAPNQQAIPAVEYLMSAEGGSAKRFVLLGTDYVYPRTTNKILRAFLKSKGVADADIMEDYTPFGHSDYQTIIANIKKFASEGKKTAVISTINGDSNVPFYKELGNAGLKATDVPVVAFSVGEEELRGVDTKPLVGHLAAWNYFMTVKNPENTAFIKKYKDWAKKNGVPNADTVVTNDPMEATYVGIYMWKQAVEKAKSTDTDKVIAALGGQTFKAPSGFTLTMDKTNHHLHKPVFIGEVRADGQFDVVWKTKEPIRAQPWSPFIPGNEGKQGL
>NZ_CP016210.1|WP_011764419.1|769757_770429_-|GntR-family-transcriptional-regulator
MTASRIAPLALYQEVAERLRERIFSHELPPGTWVDEQALAEQYGISRTPLREALKVLASEGLVTLKPRRGCYVTEISERDLDEVFNIIALLEGECARASVARASDADLARLRDIHATLEAAAAAQDIDRFFEANQAFHHVLQQIADNRWLLQVIEDLRKVIKLSRHHSLFSEGRLEQSLAEHREILEAVLARDPDAAETRMRRHIHSGRAALSRIAEARNRAA
>NZ_CP016210.1|WP_011764420.1|770755_772921_+|methylmalonyl-CoA-mutase
MSNANLPAYPQPDLEAWNKAAAKQAPDGQLDKLNWITPEGLTVKPLYTKADTADLPHADTLPGFEPFLRGPQPTMYAVKPWTIRQYAGFSTAEESNAFYRKALAAGGQGVSVAFDLATHRGYDSDNPRVLGDVGKAGVAIDSVEDMKILFDGIPLDKISVSMTMNGAVLPILAGYIVAAEEQGVAQDKLSGTIQNDILKEFMVRNTYIYPPTPSMKIIADIFQYTSSHMPKFNSISISGYHIQEAGANQAIELAFTLADGLEYVRTGIAAGMDVDTFAGRLSFFWAVGMNFYLEIAKMRAARLLWWRIMKQFNPKSPKSMMLRTHSQTSGWSLTEQDPYNNVVRTTIEAMAAVFGGTQSLHTNALDEAIALPTEFSARIARNTQIIIQEETHICNVVDPWAGSYMMEKLTQDMADKAWALIEEIEAMGGMTKAVESGWAKMKVEECAADKQARIDSGKDVIVGVNKYKLAKEDPIEILDIDNHAVREAQIARLTKIRATRDSAAVQAALDALTQCAESGEGNLLDLAVKAVRLRASVGEISDALEKVFGRYRANPQAVSGVYGAVVEDDADWKELKAEIEAFIAEEGRRPRIMIAKLGQDGHDRGAKVVASAFADLGFDIDIGPLFQTPEEAARHAVENDVHAVGCSSLAAGHKTLVPAIIAELKRLGAEDIITFVGGVIPAQDYDALYAAGAKGIFGPGTPIPKAAREVLKQIRAAKVAA
>NZ_CP016210.1|WP_011764421.1|772987_774001_+|methylmalonyl-Co-A-mutase-associated-GTPase-MeaB
MAMNMPESLPVLDDADLALVEGVRARQLRPLAKTITLIESQREDHKARARAVLEALLPHTGGAMRVGISGVPGVGKSTFIEALGLYLIEQGLRVAVLAVDPSSSLTGGSILGDKTRMELLSQNPAAFIRPSPSAGSLGGVAEKTRETLLVCEAAGFDVIIVETVGVGQSETAVAGMTDIFCLLQLPNAGDDLQAIKKGIMEIADLIVINKADIDAGAAMRAKSQMKTALHMLRPASPNWTVPVLTLSALKKDGIAEFWNAVQDYRGAMTKSGEFEAKRRHQALAWMWELIDTGLRSRFRNHPGVRDALPLLAAAVEAGGTTPSAAAQRLLGCLNRTN
>NZ_CP016210.1|WP_011764422.1|774066_775602_+|acyl-CoA-carboxylase-subunit-beta
MHDIIRQLDEKRAAARLGGGQKRIDSQHAKGKLTARERIELLLDPDSFEEWDMFKEHRCVDFGMDKAEKTPGDGVVTGYGTINGRLVFVFSQDFTVFGGSLSETHAEKICKVMDHAMKVGAPVIGLNDSGGARIQEGVASLGGYADVFQRNVMASGVIPQISMIMGPCAGGAVYSPSMTDFIFMVKDSSYMFVTGPEVVKTVTHEDVTAEELGGAVTHTSKSGVADLAFENDVEALTMLRRFMNYLPSSNREKPPVQPTNDPADRQDFSLDTLVPDNPNKPYDMKELIIKVVDDCDFFELQPDYAKNIIIGMARMDGQPVGIVANQPLVLAGCLDIKSAIKAARFVRFCDAFNIPVVTFVDVPGFMPGTAQEYGGIIKHGAKLLYAYAECTVPKVTVITRKAYGGAYDVMASKHLRGDVNLAWPSAEIAVMGPKGAVEIIFREEKNNPEKLAEREAEYKAKFANPFVAASRGFIDDVVMPHNTRKRICRSLAMLADKQLDNPWRKHGNIPL
>NZ_CP016210.1|WP_011764423.1|775740_777747_+|acetyl-CoA-carboxylase-biotin-carboxylase-subunit
MFTKILIANRGEIACRVIKTARKMGIKTVAVYSEADKDALHVDLADEAVCIGPAPSKDSYLVMDRIIAACKQTGAEAVHPGYGFLSENAEFSRRLEEEGIKFIGPKHYSVAKMGDKIESKKLAIEAKVNTIPGYNDAIAGPAEAVEIAKKIGYPVMIKASAGGGGKGLRVAYNDEQAFEGFSSCVNEARNSFGDDRVFIEKYVLEPRHIEIQVLGDSHGNYVYLNERDCSIQRRHQKVIEEAPSPFVDAEMRKAMGEQAVALARAVNYESAGTVEFVVSGATKEFYFLEMNTRLQVEHPVTELITGLDLVEQMIRVAAGEKLPLSQADVKINGWAMECRINAEDPFRGFLPSTGRLVRFQPPAEVDGQVRVDTGVYDGGEISMFYDSMIAKLIVHGATRDQAIGRMRDALNAFVIRGISSNIPFQAALMQHPRFCSGNFNTGFIAEEFPKGFDASMVPHDDPALLAAVAAYVHRSYIDRAARVSGQLPGHERAVGNEWVVIRLGTDNQNELLPVTATPVAGGYAVTLNGETYTIKSDWQLGQALFNGTCNGNEFTLQVERHKMRYRLFHWGTQADFLVMSKRAAELQSLMPVKLPPDLSKFLLSPMPGLLREVSVSEGQEVKAGEKLAVIEAMKMENLLKAEQDGKVKKVVIKPGASLAVDDVIIEFE
>NZ_CP016210.1|WP_065339707.1|777929_780386_+|EAL-domain-containing-protein
MEPTLPVDLETVADEGEDSLLRALIDVIPDLVFFKDEAGRYLGCNRAFEAYTGRREAELIGYTDRDLFDLSTADSYRGYDSAVLASGRSSRNEEWIVYPDGRRVLVDTLKTPFRDAASGRRGVVGISRDVTVFRETAEALRRSQENLERAQAVARTGSWYVDFVSGQMDWSAETCRLFGQAPGCVPSYELFLSVVHPEDQALVEAAWRQAVARGDYDLTHRVIVGGEVRWVHERAEFRRAADGAALAGIGTVQDITDRKLAEQSLRQAATVFENTGEGVIIADAKNRIIAVNRAFTVITGYGPEEVIGRSPNLLRSGRHDAAYYDAMWRGVHEAGHWQGEIWNRRKNGEIFPELLTLSVVRDHNGKVSHYVGVFSDISRMKETEARLQRLAHYDALTDLPNRVLLNLRLAHGVERVQRSGEMLAVLFLDIDRFKNVNDSLGHPVGDELLIEIARRLRSRIRAEDTLARLGGDEFVILLDRIRSANDVADFAQEIIDLLNQSFQLASGQEVFVGASIGISLYPLDTDDATQLISNADAALYQAKEAGRNVYRFYTADLTRAAHERLGLEAALRRGLERGEFVLHFQPVVALDKGEVVGAEALVRWNHPTEGMIAPLRFIPLAEETGLIVPLGEWVLESACRQGREWLDCGRPLTIAVNLSTRQFRAGDLTATVRDILDRTGFPAALLELEITESTVMEDADRAVATLAALKGLGVRLSIDDFGTGYSSLAYLKRFAVDALKIDRSFVRDIADDENDRMIVATVVAMAHQMRLGVIAEGVETAEQLAFLRSLGCEAYQGYLVGRPQAAADFLGAVERAGI
>NZ_CP016210.1|WP_084018210.1|780394_782278_+|diguanylate-cyclase
MTSVRQWAARLIWAMLAWALAIAAGGARADDIALDPAHGEVDLARRVSVLVDDGRSLSLEAAKAAFARGEGAPAEPARGGELNFGYRAADIWLHFSVAAAAPGDARWLLEVGFPSLDRVEFHAFGPGGEAHQVAGDRIAFYARPWQHRSPVFPLPPLAPGERLEVYVKVASEGSLTVPLRLWTQTALGARDQRAYSEDALYFGMLTALALYNLLLWVALREQVFLRYVGFVASLAVGFAGQTGAGGEFLWPAWPTWSHLSFPVGMALTGFFGTLFTRSFLDTRNTVPRLDRCLAVAAWVFLAAVAAHLVLGYRFAAMLTSLAGIGFAPIAALAGVRGAVRGHPGARVFLLAWALLLVGVVVMAMRNFGWLPTVWLTTHAMQIGSALEMLLLSFAMADRINVMRREREAARQALVDTLQEAGQRLEQRVAERTAELQAANRRLRDNELALQQLAFHDPLTGLYNRVMLEERIRHAMLRADRQDTQLAVLLLDLDGFKAVNDGYGHAVGDAVLAAAATRMKAQVRASDTVARLGGDEFVVVLEPFSGEDQAVRVAAKLVAALAEPVVESGVAHQIGASIGIALYPADGRDVDQLILAADRAMYRVKAAGKGGWRRNSPEQAAHPAGLRP
>NZ_CP016210.1|WP_011764426.1|782373_783234_+|neutral-zinc-metallopeptidase
MRFDHGRESDNIEDRRGEGGGGFRLGGGGKLGLGGIVLTLVALYFGVDPALLLQTAEVVRPPAAVERPASRPQDEAGRFVSMVLADTEDTWSDIFSGAGRTYQAPRLVLFSGVTGTACGTGQAAMGPFYCPADQKVYIDLSFYDDLQQRFRAPGDFAQAYVIAHEIGHHVQNLLGVSERAQRARARLSPRESNALSVRLELQADCFAGVWAHHADRSRQVLEAGDVEEALTAAAAIGDDRLQKQAQGYAVPDSFTHGSAEQRVRWFRTGLQHGSLQACDTFAARSP
>NZ_CP016210.1|WP_065339709.1|783255_783732_-|VOC-family-protein
MSQRPFKILGVQQIAIGGPSKEKLKTFWVDMLGLEVTGNFVSERENVDEDICAMGKGPFKVEVDLMQPLDPERKPAVHATPLNHIGLWVDDLPVAVEWLTAQGVRFAPGGIRRGAAGYDITFLHPKGNEEFPIGGEGVLVELVQAPPEVVEAFARLAG
>NZ_CP016210.1|WP_011764428.1|784531_785263_-|response-regulator-transcription-factor
MSATRPEASPPTIFVLEDEPDIARLICSSLTEYGFRCEHLTTGRQLLQRARQQTPDLCIVDLGLPDMDGMQVVRELQDGSPCAVLILTGRNDVTDRVLGLELGADDYIVKPFEPRELVARVRSILRRYQRSAPPETSAAEKTVARFAGWTFDGGRLTMTAPDGREVNLSAAEASLLAVLLRRPNKIFSREQLLGERDVDPFDRSIDVRISRLRRKLDDDPQNPRLIKTVYGAGYLFAAQVSWE

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

353617 : 361485

Staphylococcus_phage(42.86%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_065339477.1\|353617_355411_+	branched-chain amino acid ABC transporter ATP-binding protein/permease	A0A285PWH2	Cedratvirus	4.8e-11	27.2
WP_011764049.1\|355410_356172_+	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	4.2e-09	23.9
WP_011764050.1\|356649_356925_+	HU family DNA-binding protein	A0A1P8CWT5	Bacillus_phage	3.2e-15	51.7
WP_011764051.1\|357368_358712_+	DEAD/DEAH box helicase	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	1.5e-49	32.2
WP_011764052.1\|358796_359264_-	transcription antitermination factor NusB	NA	NA	NA	NA
WP_011764053.1\|359260_359731_-	6,7-dimethyl-8-ribityllumazine synthase	A0A2I2L4Y7	Orpheovirus	2.4e-15	37.9
WP_011764054.1\|359782_360874_-	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	A0A2H4PQS2	Staphylococcus_phage	3.9e-48	34.8
WP_065339478.1\|360870_361485_-	riboflavin synthase	A0A2H4PQS5	Staphylococcus_phage	2.4e-26	39.7

DBSCAN-SWA_2

610863 : 615650

Alteromonadaceae_phage(33.33%)

integrase,transposase

attL 601931:601945|attR 614282:614296

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
601931:601945	attL	NA	NA	NA	NA
WP_084018183.1\|610863_611172_+	helix-turn-helix domain-containing protein	A0A2P9JZG5	Alteromonadaceae_phage	3.5e-23	61.0
WP_065339593.1\|611304_611796_+	hypothetical protein	A0A2P9JZG6	Alteromonadaceae_phage	4.8e-38	51.4
WP_084018185.1\|611792_613904_+\|integrase,transposase	DDE-type integrase/transposase/recombinase	A0A125RNE9	Pseudomonas_phage	5.2e-174	48.6
WP_065339594.1\|613928_614648_+	ATP-binding protein	M4SPU5	Rhodobacter_phage	7.2e-51	44.0
614282:614296	attR	NA	NA	NA	NA
WP_065339595.1\|614647_614971_+	hypothetical protein	A0A2I7R6M5	Vibrio_phage	3.5e-13	45.8
WP_065339596.1\|614960_615650_+	hypothetical protein	A0A2H4J7A8	uncultured_Caudovirales_phage	9.7e-21	35.2

DBSCAN-SWA_3

630787 : 643451

Pseudomonas_phage(25.0%)

head,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_065339625.1\|630787_632389_+	DUF935 domain-containing protein	A0A0A1IVG5	Pseudomonas_phage	1.4e-102	47.5
WP_065339626.1\|632528_633767_+	hypothetical protein	A0A1B0T6H8	Thiobacimonas_phage	7.3e-59	51.4
WP_065339627.1\|633882_634413_+	phage virion morphogenesis protein	R9U1C4	Rhizobium_phage	2.0e-05	32.1
WP_157108136.1\|634582_635284_+	hypothetical protein	NA	NA	NA	NA
WP_065339630.1\|635812_636853_+\|protease	phage protease	A0A0M5N0Q6	Ralstonia_phage	7.0e-63	45.9
WP_065339631.1\|636854_637271_+	hypothetical protein	J9RWG0	Pseudomonas_phage	9.0e-30	56.4
WP_065339632.1\|637284_638181_+\|head	Mu-like prophage major head subunit gpT family protein	M4SRT6	Rhodobacter_phage	7.3e-77	49.2
WP_157108137.1\|638183_638693_+	hypothetical protein	NA	NA	NA	NA
WP_065339634.1\|638697_639111_+	DUF1320 domain-containing protein	G8GWF0	Rhodobacter_phage	4.3e-16	44.5
WP_065339635.1\|639110_639554_+	hypothetical protein	NA	NA	NA	NA
WP_065339636.1\|639578_640364_+	hypothetical protein	NA	NA	NA	NA
WP_065339637.1\|640367_640964_+	hypothetical protein	NA	NA	NA	NA
WP_065339638.1\|640964_643451_+	tape measure protein	A0A2D0WBX7	Bordetella_phage	1.9e-37	39.0

DBSCAN-SWA_4

1302476 : 1309368

Agrobacterium_phage(16.67%)

protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011764866.1\|1302476_1304759_-\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	7.1e-169	42.0
WP_011764867.1\|1304759_1305068_-\|protease	ATP-dependent Clp protease adapter ClpS	A0A1B1IT64	uncultured_Mediterranean_phage	9.7e-13	43.8
WP_011764868.1\|1305501_1305705_+	cold-shock protein	A0A2H4N7Y6	Lake_Baikal_phage	2.0e-22	78.8
WP_004258834.1\|1305973_1306141_-	50S ribosomal protein L33	NA	NA	NA	NA
WP_011764869.1\|1306202_1306439_-	50S ribosomal protein L28	NA	NA	NA	NA
WP_011764870.1\|1306543_1307221_-	DNA repair protein RadC	NA	NA	NA	NA
WP_011764871.1\|1307275_1308475_+	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	Q9HH70	Methanothermobacter_phage	1.9e-40	33.7
WP_011764872.1\|1308491_1308941_+	dUTP diphosphatase	Q2NP83	Xanthomonas_phage	2.3e-47	63.0
WP_065339942.1\|1308942_1309368_+	NUDIX domain-containing protein	D0R7I2	Paenibacillus_phage	7.1e-06	34.0

DBSCAN-SWA_5

2154217 : 2162023

Escherichia_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_065340374.1\|2154217_2154532_-	hypothetical protein	A0A193GYM2	Enterobacter_phage	8.3e-20	60.3
WP_065340376.1\|2155397_2155943_-	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	1.2e-53	55.6
WP_065340377.1\|2155942_2156827_-	glucose-1-phosphate thymidylyltransferase RfbA	K7QKA7	Escherichia_phage	5.9e-95	62.2
WP_065340378.1\|2156838_2157729_-	dTDP-4-dehydrorhamnose reductase	A0A291LA50	Escherichia_phage	3.8e-25	33.9
WP_065340379.1\|2157725_2158802_-	dTDP-glucose 4,6-dehydratase	A0A1D7XFE8	Escherichia_phage	9.4e-87	49.1
WP_084018410.1\|2159030_2159954_+	hypothetical protein	NA	NA	NA	NA
WP_011765612.1\|2159950_2162023_+	diguanylate cyclase	G3MA91	Bacillus_virus	3.2e-19	35.5

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP016210

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection