CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP004062	Corynebacterium glutamicum ZL-6, complete genome	3 crisprs	DEDDh,csa3,WYL,cas3,cas9,PrimPol,DinG,RT	0	1	6	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP004062_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP004062_1

549505-549598

Orphan

Consensus_repeat	Method
AGTTTTCGGTCACCTAGTTTGGT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP004062_1

>merge|NZ_CP004062|1|549505-549598|CRISPRCasFinder
AGTTTTCGGTCACCTAGTTTGGTTTCCAACCCGCCAAACCAAACTATTTGACCGAAAATTCCCCCGGAGGCAGTTTTCGGTCACCTAGTTTGGT

>NZ_CP004062|1|1|549505-549598|CRISPRCasFinder
AGTTTTCGGTCACCTAGTTTGGT	TTCCAACCCGCCAAACCAAACTATTTGACCGAAAATTCCCCCGGAGGC
AGTTTTCGGTCACCTAGTTTGGT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP004062.1\|WP_065366617.1\|543116_544001_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|223656
NZ_CP004062.1\|WP_075348086.1\|558189_558618_+\|DUF3806-domain-containing-protein	unknown	unknown	gnl\|CDD\|372263
NZ_CP004062.1\|WP_065366621.1\|551916_552969_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|226361
NZ_CP004062.1\|WP_075348084.1\|542828_543113_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP004062.1\|WP_065366623.1\|556376_558173_+\|bifunctional-uroporphyrinogen-III-C-methyltransferase/uroporphyrinogen-III-synthase	unknown	unknown	gnl\|CDD\|224503
NZ_CP004062.1\|WP_060563917.1\|550642_551803_+\|IS3-family-transposase	unknown	unknown	gnl\|CDD\|366234
NZ_CP004062.1\|WP_065366620.1\|549830_550640_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP004062.1\|WP_060563925.1\|558706_559726_+\|porphobilinogen-synthase	unknown	unknown	gnl\|CDD\|236450
NZ_CP004062.1\|WP_060563900.1\|540030_541425_+\|glutamyl-tRNA-reductase	unknown	unknown	gnl\|CDD\|234592
NZ_CP004062.1\|WP_081299822.1\|552969_554547_-\|iron-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224099
NZ_CP004062.1\|WP_003860437.1\|548056_548908_+\|quinate/shikimate-dehydrogenase-(NAD+)	unknown	unknown	gnl\|CDD\|172521
NZ_CP004062.1\|WP_065366619.1\|545703_547560_+\|dehydroshikimate-dehydratase-QsuB	unknown	unknown	gnl\|CDD\|225726
NZ_CP004062.1\|WP_075348083.1\|539696_539945_+\|glutaredoxin-family-protein	unknown	unknown	gnl\|CDD\|368604
NZ_CP004062.1\|WP_065366618.1\|544276_545680_+\|MHS-family-MFS-transporter	unknown	unknown	gnl\|CDD\|340927
NZ_CP004062.1\|WP_060563912.1\|548913_549189_-\|50S-ribosomal-protein-L7/L12	unknown	unknown	gnl\|CDD\|223300
NZ_CP004062.1\|WP_040966933.1\|547605_548043_+\|type-II-3-dehydroquinate-dehydratase	unknown	unknown	gnl\|CDD\|237270
NZ_CP004062.1\|WP_059288679.1\|554623_555703_-\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270265
NZ_CP004062.1\|WP_060563926.1\|559755_560340_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP004062.1\|WP_003855576.1\|560380_560893_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP004062.1\|WP_060563903.1\|541426_542335_+\|hydroxymethylbilane-synthase	unknown	unknown	gnl\|CDD\|223259

Protein	Function_ID	Function_description	E-value
NZ_CP004062.1\|WP_065366617.1\|543116_544001_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|223656	COG0583, LysR, Transcriptional regulator [Transcription].	5.51665e-33
NZ_CP004062.1\|WP_075348086.1\|558189_558618_+\|DUF3806-domain-containing-protein	gnl\|CDD\|372263	pfam12713, DUF3806, Domain of unknown function (DUF3806). This family represent the C-terminal domain of the structure. In two related Bacteroides species the gene lies immediately upstream from a putative ATP binding component of an ATP transporter and a putative histidinol phosphatase. The structure of this domain is strikingly similar to the N-terminal structure of 1ma7 whose C-terminal domain is a phage integrase, pfam00589.	5.71885e-22
NZ_CP004062.1\|WP_081299822.1\|552969_554547_-\|iron-ABC-transporter-permease	gnl\|CDD\|224099	COG1178, ThiP, ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism].	1.19824e-102
NZ_CP004062.1\|WP_065366621.1\|551916_552969_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|226361	COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism].	1.22263e-126
NZ_CP004062.1\|WP_065366623.1\|556376_558173_+\|bifunctional-uroporphyrinogen-III-C-methyltransferase/uroporphyrinogen-III-synthase	gnl\|CDD\|224503	COG1587, HemD, Uroporphyrinogen-III synthase [Coenzyme metabolism].	3.97466e-65
NZ_CP004062.1\|WP_060563917.1\|550642_551803_+\|IS3-family-transposase	gnl\|CDD\|366234	pfam00665, rve, Integrase core domain. Integrase mediates integration of a DNA copy of the viral genome into the host chromosome. Integrase is composed of three domains. The amino-terminal domain is a zinc binding domain pfam02022. This domain is the central catalytic domain. The carboxyl terminal domain that is a non-specific DNA binding domain pfam00552. The catalytic domain acts as an endonuclease when two nucleotides are removed from the 3' ends of the blunt-ended viral DNA made by reverse transcription. This domain also catalyzes the DNA strand transfer reaction of the 3' ends of the viral DNA to the 5' ends of the integration site.	2.34545e-26
NZ_CP004062.1\|WP_060563925.1\|558706_559726_+\|porphobilinogen-synthase	gnl\|CDD\|236450	PRK09283, PRK09283, porphobilinogen synthase.	0
NZ_CP004062.1\|WP_060563900.1\|540030_541425_+\|glutamyl-tRNA-reductase	gnl\|CDD\|234592	PRK00045, hemA, glutamyl-tRNA reductase; Reviewed.	7.50526e-158
NZ_CP004062.1\|WP_059288679.1\|554623_555703_-\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|270265	cd13547, PBP2_Fbp_like_2, Substrate binding domain of an uncharacterized ferric iron transporter, a member of the type 2 periplasmic binding fold superfamily. The periplasmic iron binding protein plays an essential role in the iron uptake pathway of Gram-negative pathogenic bacteria from the Pasteurellaceae and Neisseriaceae families and is critical for survival of these pathogens within the host. This periplasmic domain (Fbp) has high affinity for ferric iron and serves as the primary receptor for transport. After binding iron with high affinity, Fbp interacts with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. The ferric iron-binding proteins belong to the PBP2 superfamily of periplasmic binding proteins that differ in size and ligand specificity, but have similar tertiary structures consisting of two globular subdomains connected by a flexible hinge. They have been shown to bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	6.33674e-102
NZ_CP004062.1\|WP_003860437.1\|548056_548908_+\|quinate/shikimate-dehydrogenase-(NAD+)	gnl\|CDD\|172521	PRK14027, PRK14027, quinate/shikimate dehydrogenase (NAD+).	0
NZ_CP004062.1\|WP_065366619.1\|545703_547560_+\|dehydroshikimate-dehydratase-QsuB	gnl\|CDD\|225726	COG3185, COG3185, 4-hydroxyphenylpyruvate dioxygenase and related hemolysins [Amino acid transport and metabolism / General function prediction only].	2.66563e-132
NZ_CP004062.1\|WP_075348083.1\|539696_539945_+\|glutaredoxin-family-protein	gnl\|CDD\|368604	pfam05768, DUF836, Glutaredoxin-like domain (DUF836). These proteins are related to the pfam00462 family.	1.36745e-13
NZ_CP004062.1\|WP_065366618.1\|544276_545680_+\|MHS-family-MFS-transporter	gnl\|CDD\|340927	cd17369, MFS_ShiA_like, Shikimate transporter and similar proteins of the Major Facilitator Superfamily. This subfamily is composed of Escherichia coli shikimate transporter (ShiA), inner membrane metabolite transport protein YhjE, and other putative metabolite transporters. ShiA is involved in the uptake of shikimate, an aromatic compound involved in siderophore biosynthesis. It has been suggested that YhjE may mediate the uptake of osmoprotectants. The ShiA-like subfamily belongs to the Metazoan Synaptic Vesicle Glycoprotein 2 (SV2) and related small molecule transporter family (SV2-like) of the Major Facilitator Superfamily (MFS) of membrane transport proteins. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	6.67069e-159
NZ_CP004062.1\|WP_060563912.1\|548913_549189_-\|50S-ribosomal-protein-L7/L12	gnl\|CDD\|223300	COG0222, RplL, Ribosomal protein L7/L12 [Translation, ribosomal structure and biogenesis].	1.24501e-15
NZ_CP004062.1\|WP_040966933.1\|547605_548043_+\|type-II-3-dehydroquinate-dehydratase	gnl\|CDD\|237270	PRK13015, PRK13015, 3-dehydroquinate dehydratase; Reviewed.	8.40157e-84
NZ_CP004062.1\|WP_060563903.1\|541426_542335_+\|hydroxymethylbilane-synthase	gnl\|CDD\|223259	COG0181, HemC, Porphobilinogen deaminase [Coenzyme metabolism].	4.14818e-132

>NZ_CP004062.1|WP_060563912.1|548913_549189_-|50S-ribosomal-protein-L7/L12
MFGRKDVNLSALEARVAALERRLAEQDRIIAQLGGDSSTPLSLQRPQSGLHPDVVALLQQGKKIAAIKRHRELTGAGLKEAKETVEASRFY
>NZ_CP004062.1|WP_003860437.1|548056_548908_+|quinate/shikimate-dehydrogenase-(NAD+)
MNDSILLGLIGQGLDLSRTPAMHEAEGLAQGRATVYRRIDTLGSRASGQDLKTLLDAALYLGFNGLNITHPYKQAVLPLLDEVSEQATQLGAVNTVVIDANGHTTGHNTDVSGFGRGMEEGLPNAKLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDTSRAQALADVINNAVGREAVVGVDARGIEDVIAAADGVVNATPMGMPAHPGTAFDVSCLTKDHWVGDVVYMPIETELLKAARALGCETLDGTRMAIHQAVDAFRLFTGLEPDVSRMRETFLSL
>NZ_CP004062.1|WP_040966933.1|547605_548043_+|type-II-3-dehydroquinate-dehydratase
MPGKILLLNGPNLNMLGKREPDIYGHDTLEDVVALATAEAAKHGLEVEALQSNHEGELIDALHNARGTHIGCVINPGGLTHTSVALLDAVKASELPTVEVHISNPHAREEFRHHSYISLAAVSVIAGAGIQGYRFAVDILANLQK
>NZ_CP004062.1|WP_065366619.1|545703_547560_+|dehydroshikimate-dehydratase-QsuB
MRTSIATVCLSGTLAEKLRAAADAGFDGVEIFEQDLVVSPHSAEQIRQRAQDLELTLDLFQPFRDFEGVEEEQFLKNLHRLEEKFKLMNRLGIEMILLCSNVGTATINDDDLFVEQLHRAADLAEKYNVKIAYEALAWGKFVNDFEHAHALVEKVNHKALGTCLDMFHILSRGWETDEVENIPAEKIFFVQLADAPKLSMDILSWSRHHRVFPGEGDFDLVKFMVHLAKTGYDGPISLEIFNDSFRKAEVGRTAIDGLRSLRWLEDQTWHALNAEDRPSALELRALPEVAEPEGVDFIEIATGRLGETIRVLHQLGFRLGGHHCSKQDYQVWTQGDVRIVVCDRGATGAPTTISAMGFDTPDPEAAHARAELLRAQTIDRPHIEGEVDLKGVYAPDGVELFFAGPSPDGMPEWLPEFGVEKQEAGLIEAIDHVNFAQPWQHFDEAVLFYTALMALETVREDEFPSPIGLVRNQVMRSPNDAVRLLLSVAPEDGEQGDFLNAAYPEHIALATADIVAVAERARKRGLDFLPVPENYYDDVQARFDLPQEFLDTLKENHLLYDRDENGEFLHFYTRTLGTLFFEVVERRGGFAGWGETNAPVRLAAQYREVRDLERGIPN
>NZ_CP004062.1|WP_065366618.1|544276_545680_+|MHS-family-MFS-transporter
MSEQLQGVTHSESTPGKTPKRAALSSWIGSALEYYDFAVYGTAAALVLNHLFFPADTSPGIAILAAMGTVGVAYVVRPLGALIMGPLGDRYGRKFVLMLCLFLIGASTFAVGCLPTFDQVGYLAPTLLVLCRVIQGLSASGEQSSAISVSLEHADERHRAFTASWTLHGTQFGTLLATGVFIPFTLFLSEDALMSWGWRVPFWLSAAVVLVAFLIRRGLEEPPAFHENKEAVAGAASPLAMTLRYHKAAVVRVAIAAMINSVNIVFTVWALSFATNIVGLDRSTVLLVPVVANLVALIAIPLSGMLADRIGRRPVFIMGAIGGGLAMNGYLGAIYSGNWTMIFFMGVLMSGLLYSMGNAVWPAFYAEMFPTSVRVTGLALGTQIGFAVSGGFVPVIASALAGDQGDQWMKVSIFVGVVCVISALVAMTAKETKALTLDEIDALHTARGETADLAAASKASEAQLAAQ
>NZ_CP004062.1|WP_065366617.1|543116_544001_-|LysR-family-transcriptional-regulator
MHLNQLEFFIAVAQHGQINRAAEDLLISQPALSRQISALEKSVGAPLFERHSRGVSLTKAGEILHEEALRTLSRMQSVVDEIQSGEHLITSINIGVPPGIPIDWLRCQLIDLDPETRISLIESPTDDQLKLLKQRELDIALCRRQSEAFATTLVHEQELGIVVRKNSELHQKVAGKDNATLFDLEGLRVLAHSRGEVRIQEEILKNAMLAAGVNATWIFRKFGQYSSLIADLVQADVALTTEESARTNFPSWQWVPIEGEDASGNDLVVRTWITWNPQPTPAVKALIQKFIDGN
>NZ_CP004062.1|WP_075348084.1|542828_543113_+|hypothetical-protein
MRIPRKAIRNIQVVDNVISSVDRPIKRAGRLRIPGVFVAGTHAYVNETLSENEFSMCRKNEPGLVIELENISIDRIVISTPDAHRYADELMAAV
>NZ_CP004062.1|WP_060563903.1|541426_542335_+|hydroxymethylbilane-synthase
MTLKIGTRGSKLATTQAGTIRDQLKHYGRDAELHIVTTPGDVNMSPVERIGVGVFTQALRDVLHSGDCDVAVHSMKDLPTAADPRFHLVVPTRADSREALIARDGLTLAELPEGAKVGTSAPRRISQLKVIRPDLEILPLRGNIDTRMGKVTSGELDAVMLAYAGLTRVGMQDRATEVFDADIIMPAPAQGALAIECRADDTETVRALNMLMHADTFVSAVAERTVLNRLEAGCTAPVAAHATLDGYSGDTMTLTAGVYALDGSDQLVFSAEGDGARPEELGELVAQQLIDAGAANLLGDRS
>NZ_CP004062.1|WP_060563900.1|540030_541425_+|glutamyl-tRNA-reductase
MVSVLIVGMSHRSAPVSLLERLSMDDSVRGETTQALLGRASLSEALIVSTCNRLEVYTVTSSFHTGVNDVVEVLHEASGVDIETLRGYLYVRYADAAAEHMLVVTSGLDSMVLGEQQIIGQVRTAYQAANEYGSVGPALHSLTQTALHTGKRVHSETAIDDAGASMVSFAVDRALVQMGLDPEAEAPLSGKTALVLGAGAMSSLAATHLGRAGISNLIMANRTLERAERLAEHSLEAGVPAEVVEYDQRASAYNRVDLVVSATGADDFTVKPEDIPEGASLMLVDLSMPRDIDDACADLPGVDLVNIERLHKASREGGSGMAPSEEEALAIVREELDSFTSEQRIRDIVPAVSALRRQAASVGSDELDRLRQRAPGISEVEWGEVEKTVRRVVDKLLHEPTVRVKELAARSGSISYDSALQELFGLESLASTAAPATTSVNASELPDAGIVAFVNAPSATQTRE
>NZ_CP004062.1|WP_075348083.1|539696_539945_+|glutaredoxin-family-protein
MGATMGHSVEIIVRDNCGSCVRVKAQILSIVEAAGIKLTERNVDQDASLKLEFGDRVPVILVDDEEFACWEVDNDELANALL
>NZ_CP004062.1|WP_065366620.1|549830_550640_+|hypothetical-protein
MSIPFSVLQDYLDLISPEALPQIPQPPAPVPTAPQLPPAPDPHSIEWPIFPPDRISANGRRYYEPQTRLEFMRIYTTLPHGYRQPFLKANNIGHCTVRTWLAAISTFSRLPHAFDDAHRFGIERTTPVDDVTTLTADDKRDLVIGYLAQPHGQGQQFLTFYQLRKHTIMAWCAAMTDGDLDADVYPRKIGLMTTRTVVEIVRLRHMIAQQLERATIMENEYLKEIAALKKELAHYKQKDHQNQMVIDILGKAIGTRPNPGEGLDEEDAT
>NZ_CP004062.1|WP_060563917.1|550642_551803_+|IS3-family-transposase
MDEQRAFDQGLKEENTLITDLTTCARLSHNKALRLIKLSKSTAYYRNKPRPCPAPKPVLQAVAAPTAPGVEPTPEPWQGKEPAVSSVRQALAEHERQFIVDAITAYPQLSVSGVFNMLFNKGIYRASLRTWWRVAKQHKLLHKDRVSALSPGKRSPTPRVKPRLEATQPGQVVCWDVTFLPSLVRGKTYALHLAIDLFSRKIVGAKVAPTENTSTAVELLTQVLADNPGVVTVHSDNGSAMTSTRVRRLLADHGVALSLIRPRVSDDNAFVESVFHTLKYRPFYPKVFASMDQARVWVEEFVVYYNTVHPHSGVAGHTPQSVFDGSWRAAHRLRVQALDAHYRQFPQRYVGRPVVQEVAGVVRLNGARDDGSVQERVGGVASLLSA
>NZ_CP004062.1|WP_065366621.1|551916_552969_-|ABC-transporter-ATP-binding-protein
MSSIKLRDLSVSFRDGTFGLLDINLKIEPEEFVVLIGPSGSGKTTMLRTIAGFAEPTSGSVLIGGEDMTHVPPERRRMGMVFQQHAVWPHMSVAKNVGYPLARSGQKGASISKRVERTLALVGLEGFGSRKPASLSGGQRQRVALARAIIADPTVLLLDEALSALDEPLRDALRRELVSLTRREGLTTVHVTHDRAEAISIADRIVVLGNSRIQQVATPTELLSAPATADVARFIIDATVLNGIVRNGRVMCPDLDTSWDLDAVQAIDDIFDGDLVDIAIPPHSVGIGPAHHPDYIFAEITSVLFQVTSYSVTAKTQSGHSFRMSITCSVPEIGETIGLSIDNPMVYRAD
>NZ_CP004062.1|WP_081299822.1|552969_554547_-|iron-ABC-transporter-permease
MRLGVWLIVAGLFITPLALVVGLALGGNQFPALWDSGLGKALWNSAYTTVLSAVGATIIGTIMALTLDRTDVFGRTALRLFLLSPLLIPPFIGAIAWLQLFGKNQGINRFFGTEVWDIYGADGVTFLLIVHSYPTVYIIVSAALRQLPSDLEQAARIAGADTFTVLRTITLPLLKPALLSAFTLTAVANFADFGIPALLGSPARFETLATMIYRFMESGTVSNPLQVVSTIGIVLLFLGIAAVTADYLVSLYAASKLQDAGTPHRFTLNKSRIPVSLITWIIALIITAAPLLGLAYRALLPAPGVPFNLDNITLNNFEAALSNPRVIEGFSNSLMLSLGAALICGVLGWLIGVLITRTQHFANVPLTLTVLLPTALPGMIIGVGWLILGRYTGIYNTPWVILGAYVCAFTALVVQAVRGPLSQAPEAIEEAARISGAGRLRSIMDTTGAMAIPAAFAGAVLVAVTAVRELTVSILLIAPGTTTLGVQVFNLQQAGNYNQASALSLMFAIIGIVALALTVRSQKEF
>NZ_CP004062.1|WP_059288679.1|554623_555703_-|ABC-transporter-substrate-binding-protein
MSSKHPLKRTAVTVFALGASAALLVACSEPSEDVSTAETTTASSSANASDAAGEKVTITVYTSEPEEKVDEINKAFMEANPDIEVEVYRAGTGDLTARIEAEKASGSIEADVLWAADAATFETYAAQGDLAELEDVDTSDIIEEALDAENFYVGTRIIPTVIAYNTEVVDQAELPTSWADLTDPKYAGQLVMPDPAVSGAAAFNASVWKNDPALGEAWITALGENQPMIAQSNGPTSQEIAGGGHPVGIVVDYLVRDLAAAGSPIDTIYASEGSPYITEPAGVFADSEKKEAAERYINFLLSVEGQEIAVEQAYLPVREDVGTPEGTPELADIELMTPDLEVVTADKAAAVEFFQNAMN
>NZ_CP004062.1|WP_065366623.1|556376_558173_+|bifunctional-uroporphyrinogen-III-C-methyltransferase/uroporphyrinogen-III-synthase
MTIAHKPEMAETTGIETNQVSETIGVESLTHGNLRPVSSFEGQHEGQTEELLPGKVIFVGAGPGNPDLLTVRAREVLGNAVRAITDEQVLSGVRAFVATEIPVPEDKLQAAEDEYERICIEAKENGARRKPPRPAPPTAAEITEVSEATPAQIVELVQDALSYGGDVIRLVTGNPLSSDATLAEISAVSEAGLEFQVVPGMSLPGTVPAFAGIALGSTYTETDVNGQDLDWDQLASAPQPLVLQARVDDLSRIAQELKARNMSLETPVSVTVNGTTRLQRTYDTTLGLLHKLDAELSGPLVVTLGKGVDDRSKYSWWENRALYGWRVLVPRPREQAASMSARLSSHGAIPQEVPTISVEPPRNPAQMERAIKGIVEGRYQWVVLTSVNAVKAVWEKITEFGLDSRSFAGVRIAAVGEKTAAEIRALGITPELLPARTRQNAQGLVDVFPEYFEELDPVGRVLLPRADIATDVLVDGLTHLGWEVEDVVAYRTVRAAPPSADIRDMIKTGGFDAVAFTSSSTVKNLVGIAGKPHPRTIVACIGPMTAATAEELGLRVDVMPEIAEVPELIDALAEHVADLRAKGELPPPRKKRRRRKAS
>NZ_CP004062.1|WP_075348086.1|558189_558618_+|DUF3806-domain-containing-protein
MLSMDIQQLDAETTAWKDSLLRAAQEAGFHFEPPKFFEDFETMVEQYKQAAASDPDIDVTDIQQMWGIVVGEYLREKMGMEWVVITDDYGTDLAILATAPNGDHVYSCPIIVVGKRFSTDYEPGQLEFFCNQFMVTSLAQLQ
>NZ_CP004062.1|WP_060563925.1|558706_559726_+|porphobilinogen-synthase
MSTSSDYSHALIRRPRRLRANPAMRELVAETALRPADLILPMFFADGIAEAREISSMPGVYQHTEDSLLRAAHEALDAGVRCVDLFGVPVDAAKDFNGSEAWSETGVLNRALSSLRKEFGDDLLIMADTCLDEFTDHGHCGVVTEDRHGNAIVDNDATLPLYQQMAVAQARAGAHIVSPSGMMDGQIAAIRAALDEEGYQDVAIMAYSAKYASAFFGPFREAVGSSLQGDRRTYQQDPANLRESLLEAELDIAEGADFIMVKPALPYLDVLTRIADTSPVPVAAYQVSGEYAMIQAAGRNGWVDLDAVMMESLTSIKRAGANQILTYFAVNAARALRNA
>NZ_CP004062.1|WP_060563926.1|559755_560340_+|hypothetical-protein
MSMLPNLTPKKSAPPSSSASAKNPGEKKEDTVKLLIQMWAVMIGLELLHQILNVVMSFTDPTALRTVAKEQAAAQGLSDGIVNATVIAAILVMGFFNLIVIAILSWMVVMVKNRSKRLPTAFLLLTIFSFFFILRVLMLFFASPGGTDVPMALFAIDGCVQILVGVSAGVAYALSRTEQPVKMLTDYAPEDAKR
>NZ_CP004062.1|WP_003855576.1|560380_560893_+|hypothetical-protein
MPSMFPSPATGGDDINRRPLNEPNADATTIPTALKVVFWMLFATAAFMIFTGLVMYTAGYTGPDDVDESYKAVVVNNQEFIGGINAFAGIVIAALTSQLPKGGKNPRRLLLAIMLLVLLTDLLSFATRAGGFALAIIAVLLALEALLMFRPAVNDHIDRNHMARVMNREK

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Crispr_ID: NZ_CP004062_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP004062_2

2125775-2125893

Orphan

Consensus_repeat	Method
GGTTCCTCTGCTACTGCAGGTTCTTCAACCACTGCTGGCTCTTC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP004062_2

>merge|NZ_CP004062|2|2125775-2125893|CRISPRCasFinder
GCAAGTTCTTCAGCTGCAGGTTCCTCTGCTACTGCAGGTTCTTCAACCACTGCTGGCTCTTCTGCAGCTACTGCTGGCTCTTCGACAACTGCAGGTTCCTCAACAATTGCTGGTTCCTC

>NZ_CP004062|2|2|2125775-2125893|CRISPRCasFinder
GCAAGTTCTTCAGCTGCAGGTTCCTCTGCTACTGCAGGTTCTTC	AACCACTGCTGGCTCTTCTGCAGCTACTGCT
GGCTCTTCGACAACTGCAGGTTCCTCAACAATTGCTGGTTCCTC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP004062.1\|WP_003861911.1\|2115346_2115697_+\|cupin-domain-containing-protein	unknown	unknown	gnl\|CDD\|380358
NZ_CP004062.1\|WP_065366967.1\|2139208_2140069_-\|bifunctional-DNA-formamidopyrimidine-glycosylase/DNA-(apurinic-or-apyrimidinic-site)-lyase	unknown	unknown	gnl\|CDD\|234899
NZ_CP004062.1\|WP_060564748.1\|2117955_2118834_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224054
NZ_CP004062.1\|WP_060564754.1\|2134005_2134290_-\|acylphosphatase	unknown	unknown	gnl\|CDD\|237712
NZ_CP004062.1\|WP_081299901.1\|2134300_2136106_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|366166
NZ_CP004062.1\|WP_065367245.1\|2123118_2124435_-\|ammonium-transporter	unknown	unknown	gnl\|CDD\|223083
NZ_CP004062.1\|WP_065366964.1\|2127005_2130380_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP004062.1\|WP_065366963.1\|2120630_2122709_-\|[protein-PII]-uridylyltransferase	unknown	unknown	gnl\|CDD\|178937
NZ_CP004062.1\|WP_003861930.1\|2137221_2138031_+\|sulfite-exporter-TauE/SafE-family-protein	unknown	unknown	gnl\|CDD\|376667
NZ_CP004062.1\|WP_059289479.1\|2122715_2123054_-\|P-II-family-nitrogen-regulator	unknown	unknown	gnl\|CDD\|223424
NZ_CP004062.1\|WP_065366961.1\|2117089_2117959_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|378925
NZ_CP004062.1\|WP_060564753.1\|2130523_2133991_-\|chromosome-segregation-protein-SMC	unknown	unknown	gnl\|CDD\|224117
NZ_CP004062.1\|WP_003861938.1\|2140061_2140805_-\|ribonuclease-III	unknown	unknown	gnl\|CDD\|234633
NZ_CP004062.1\|WP_065366960.1\|2116593_2117070_+\|ankyrin-repeat-domain-containing-protein	unknown	unknown	gnl\|CDD\|293786
NZ_CP004062.1\|WP_065366966.1\|2138587_2139205_-\|cation-transporter	unknown	unknown	gnl\|CDD\|224151
NZ_CP004062.1\|WP_060564757.1\|2138128_2138578_-\|metallopeptidase	unknown	unknown	gnl\|CDD\|227152
NZ_CP004062.1\|WP_060564745.1\|2114701_2115217_-\|ribosome-maturation-factor-RimM	unknown	unknown	gnl\|CDD\|234650
NZ_CP004062.1\|WP_003861940.1\|2140801_2141338_-\|DNA-binding-protein	unknown	unknown	gnl\|CDD\|224317
NZ_CP004062.1\|WP_065366962.1\|2118908_2120552_-\|signal-recognition-particle-protein	unknown	unknown	gnl\|CDD\|236780
NZ_CP004062.1\|WP_003856343.1\|2115768_2116278_-\|30S-ribosomal-protein-S16	unknown	unknown	gnl\|CDD\|184724

Protein	Function_ID	Function_description	E-value
NZ_CP004062.1\|WP_003861911.1\|2115346_2115697_+\|cupin-domain-containing-protein	gnl\|CDD\|380358	cd02230, cupin_HP0902-like, Helicobacter pylori HP0902 and related proteins, cupin domain. This family includes prokaryotic and archaeal proteins homologous to HP0902, a functionally uncharacterized protein from Helicobacter pylori and Spy1581, a protein of unknown function from Streptococcus pyogenes. These proteins demonstrate all-beta cupin folds that cannot bind metal ions due to the absence of a metal-binding histidine that is conserved in many metallo-cupins. HP0902 is able to bind bacterial endotoxin lipopolysaccharides (LPS) through its surface-exposed loops, where metal-binding sites are usually found in other metallo-cupins, and thus may have a putative role in H. pylori pathogenicity.	4.67288e-24
NZ_CP004062.1\|WP_065366967.1\|2139208_2140069_-\|bifunctional-DNA-formamidopyrimidine-glycosylase/DNA-(apurinic-or-apyrimidinic-site)-lyase	gnl\|CDD\|234899	PRK01103, PRK01103, bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase.	1.78776e-129
NZ_CP004062.1\|WP_060564748.1\|2117955_2118834_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224054	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms].	3.43693e-88
NZ_CP004062.1\|WP_060564754.1\|2134005_2134290_-\|acylphosphatase	gnl\|CDD\|237712	PRK14422, PRK14422, acylphosphatase; Provisional.	2.94428e-47
NZ_CP004062.1\|WP_081299901.1\|2134300_2136106_-\|hypothetical-protein	gnl\|CDD\|366166	pfam00561, Abhydrolase_1, alpha/beta hydrolase fold. This catalytic domain is found in a very wide range of enzymes.	0.00114339
NZ_CP004062.1\|WP_065367245.1\|2123118_2124435_-\|ammonium-transporter	gnl\|CDD\|223083	COG0004, AmtB, Ammonia permease [Inorganic ion transport and metabolism].	9.10403e-147
NZ_CP004062.1\|WP_003861930.1\|2137221_2138031_+\|sulfite-exporter-TauE/SafE-family-protein	gnl\|CDD\|376667	pfam01925, TauE, Sulfite exporter TauE/SafE. This is a family of integral membrane proteins where the alignment appears to contain two duplicated modules of three transmembrane helices. The proteins are involved in the transport of anions across the cytoplasmic membrane during taurine metabolism as an exporter of sulfoacetate. This family used to be known as DUF81.	6.26176e-19
NZ_CP004062.1\|WP_065366963.1\|2120630_2122709_-\|[protein-PII]-uridylyltransferase	gnl\|CDD\|178937	PRK00227, glnD, [protein-PII] uridylyltransferase.	0
NZ_CP004062.1\|WP_003861938.1\|2140061_2140805_-\|ribonuclease-III	gnl\|CDD\|234633	PRK00102, rnc, ribonuclease III; Reviewed.	5.47434e-110
NZ_CP004062.1\|WP_059289479.1\|2122715_2123054_-\|P-II-family-nitrogen-regulator	gnl\|CDD\|223424	COG0347, GlnK, Nitrogen regulatory protein PII [Amino acid transport and metabolism].	1.07915e-52
NZ_CP004062.1\|WP_065366961.1\|2117089_2117959_-\|ABC-transporter-permease	gnl\|CDD\|378925	pfam12698, ABC2_membrane_3, ABC-2 family transporter protein. This family is related to the ABC-2 membrane transporter family pfam01061.	2.88748e-08
NZ_CP004062.1\|WP_060564753.1\|2130523_2133991_-\|chromosome-segregation-protein-SMC	gnl\|CDD\|224117	COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning].	0
NZ_CP004062.1\|WP_065366960.1\|2116593_2117070_+\|ankyrin-repeat-domain-containing-protein	gnl\|CDD\|293786	sd00045, ANK, ankyrin repeats. Ankyrin repeats are one of the most abundant repeat motifs, and generally function as scaffolds for protein-protein interactions in processes including cell cycle, transcriptional regulation, signal transduction, vesicular trafficking, and inflammatory response. Although predominantly found in eukaryotic proteins, they are also found in some bacterial and viral proteins. Less is known of their physiological roles in prokaryotes. Some bacterial ANK proteins play key roles in microbial pathogenesis by mimicking or manipulating host function(s). The pathogen Providencia alcalifaciens N-formyltransferase ankyrin repeats function in small molecule binding and allosteric control. Ankyrin-repeat proteins have been associated with a number of human diseases.	7.05917e-26
NZ_CP004062.1\|WP_065366966.1\|2138587_2139205_-\|cation-transporter	gnl\|CDD\|224151	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism].	4.84023e-42
NZ_CP004062.1\|WP_060564757.1\|2138128_2138578_-\|metallopeptidase	gnl\|CDD\|227152	COG4815, COG4815, Uncharacterized protein conserved in bacteria [Function unknown].	3.00522e-84
NZ_CP004062.1\|WP_060564745.1\|2114701_2115217_-\|ribosome-maturation-factor-RimM	gnl\|CDD\|234650	PRK00122, rimM, 16S rRNA-processing protein RimM; Provisional.	3.31053e-62
NZ_CP004062.1\|WP_003861940.1\|2140801_2141338_-\|DNA-binding-protein	gnl\|CDD\|224317	COG1399, COG1399, Predicted metal-binding, possibly nucleic acid-binding protein [General function prediction only].	4.27855e-36
NZ_CP004062.1\|WP_065366962.1\|2118908_2120552_-\|signal-recognition-particle-protein	gnl\|CDD\|236780	PRK10867, PRK10867, signal recognition particle protein; Provisional.	0
NZ_CP004062.1\|WP_003856343.1\|2115768_2116278_-\|30S-ribosomal-protein-S16	gnl\|CDD\|184724	PRK14520, rpsP, 30S ribosomal protein S16; Provisional.	1.53099e-69

>NZ_CP004062.1|WP_065367245.1|2123118_2124435_-|ammonium-transporter
MGADQIAAVSGNSAWMLMSASLVLLMTPALALFYGGMSRQKSVLNMMMMSFGALGVVTVIYLLWGWSMSYGTQSIAGIFANPFEFFGLKDSIVDADGNYIEGAAGYPNIIDIGFQLTFAVISTALISGALAERVKFSTWLIFSGAWATLVYFPLAHMVWGGGLLSHNVTGFASWLFGSTDGEANIAPIDFAGGTVVHISAGTAALVLALIVGKRKTFGKAIARPHNLPMVMLGAALLWFGWFGFNGGSAFAADGLAGLAWVNTTAATAAAMLGWLATEKFRDGHATSLGAASGVVAGLVAITPAAGALTPVTSLILGAIGGILACLGVGLKYRFGFDDSLDVVGVHLVAGLWGTVGVGLLATDIGWFSGDGMDGLKLFIVQIVIALVAVVFAGVITALIAFALKATVGWRVDDDVEQQGIDTHEHAESAYDTTGPEIR
>NZ_CP004062.1|WP_059289479.1|2122715_2123054_-|P-II-family-nitrogen-regulator
MKLITAIVKPFTLTDIKDALEQAGVQGMTVTETQGFGQQKGHTEVYRGAEYAVDFVPKVKIEVIISDAQAEEVINVIVETARTGKVGDGKVWMTNIEELVRVRTGERGEAAL
>NZ_CP004062.1|WP_065366963.1|2120630_2122709_-|[protein-PII]-uridylyltransferase
MNNPAQLRQDTEKEVLALLGSLVLPAGTALAATGSLARSELTPYSDLDLILIHPPGATPDGVEDLWYPIWDAKKRLDYSVRTPDECVAMISADSTAALAMLDLRFIAGDEDLCAKTRRRIVEKWRQELNKNFDAVVDTAIARWRRSGPVVAMTRPDLKHGRGGLRDFELIKALALGHLCNVPQLDTQHQLLLDARTLLHVHARRSRDVLDPEFAVDVAMDLGFVDRYHLGREIADAARAIDDGLTTALATARGILPRRTGFAFRNASRRPLDLDVVDANGTIELSKKPDLNDPALPLRVAAAAATTGLPVAESTWARLNECPPLPEPWPANAAGDFFRILSSPKNSRRVVKNMDRHGLWSRFVPEWDRIKGLMPREPSHISTIDEHSLNTVAGCALETVTVARPDLLVLGALYHDIGKGFPRPHEQVGAEMVARAASRMGLNLRDRASVQTLVAEHTAVAKIAARLDPSSEGAVDKLLDAVRYDLVTLNLLEVLTEADAKATGPGVWTARLEHALRIVCKRARDRLTDIRPVAPMIAPRSEIGLVERDGVFTVQWHGEDLHRILGVIYAKGWTITAARMLANGQWSAEFDVRANGPQDFDPQHFLQAYQSGVFSEVPIPAPGITATFWHGNTLEVRTELRTGAIFALLRTLPDALWINAVTRGATLIIQAALKPGFDRATVERSVVRSLAGS
>NZ_CP004062.1|WP_065366962.1|2118908_2120552_-|signal-recognition-particle-protein
MFESLSDRLNSALSGLRGKGKLTEADINATTREIRLALLEADVSLTVVRAFINRIKERAVGAEVSQALNPAQQVIKIVNEELVQILGGETRRLSLAKNPPTVIMLAGLQGAGKTTLAGKLSKHLVKQGHTPMLVACDLQRPGAVQQLQIVGERAGVTTFAPDPGTSIDSLEHEMGTSHGDPVEVARAGIEEAKRTQHDIVIVDTAGRLGIDETLMTQARNIREAINPDEVLFVIDSMIGQDAVDTAEAFRDGVDFTGVVLTKLDGDARGGAALSIREVTGKPIMFASTGEKLDDFDVFHPERMASRILGMGDVLSLIEQAEAVMDQEKAEVAAQKLGSGELTLEDFLDQMLMIRRMGPIGNILKMLPGGKQMSQMADMVDEKQLDRIQAIIRGMTPAERDNPKILNASRRKRIANGSGVTVSEVNKLVERFFEARKMMGQMAGQFGMGPGSRSATKKQAKGRKGKNGKRKPAKKGPTQPKMPMGGMPGMPGMPGMGGAGMPDLAELQKQLGGAGDGMGGLGGGLPGMPKLPKGMENIDLNNLDFGKK
>NZ_CP004062.1|WP_060564748.1|2117955_2118834_-|ABC-transporter-ATP-binding-protein
MSPILKVRDLVKRYGDTIAVDQLSFDVSQGEIFAFLGENGAGKTTTISCLIGVDQPTSGEIELQGGQVDSEKLGVVFQQSVLDPLLSAKENLETRGQLYPGVGKQRVAQLIEQIGMEGFADRRYGVLSGGEKRRTDIARALLHSPDILFLDEPTAGLDPRSRRQVWDTINSLRNDVGLTVFLTTHYMEETELADSVLIIDRGKEVASGTPMELRARYTTTELTLRTNDPTHLGKELAHLSPEIDGDRLRIKLENGLEAARLATELDGVLDVEIRHGSMDDVFLAVTAERKRS
>NZ_CP004062.1|WP_065366961.1|2117089_2117959_-|ABC-transporter-permease
MITVLTRRHLRCFFRDRMALLFSIMGALILLGLYVLFLGKLQIDGLMVDLPDSARDDVEGFVFNWVFSGILITSAITVPQAALGVLVEDRTRGGIKDFLVAPVSRTTLTVSYIFAAVIVAMTILIFEIVVGSIGLAILGHFSMSIARVLELVVALLLLTLVFSAIAAFLITLVKSQGGMSALSSLVGTLAGFLSAAYIPPIALPEAVTNVLNFLPFTPAGMLIRQIVVTPALDAISLPPEAFDIFQFGYGLKLEMFGEPVSTWVAVGIVAAWRAVFGLIAASKMKSVVR
>NZ_CP004062.1|WP_065366960.1|2116593_2117070_+|ankyrin-repeat-domain-containing-protein
MFPITSGNDDRNLIRYVDGGRFDEIMLTGDLTGLSSFLTNAGPNARDDFDLTVLMRAAEAGNLMVVARLLDLGANPRLTNPRGVTALHIAAIAGDDGIVECLIDAGAEVDAVDDQGRTPLWNAAAHHLPDSAVVDVLLRAGANVNLRDCNGVSPEDML
>NZ_CP004062.1|WP_003856343.1|2115768_2116278_-|30S-ribosomal-protein-S16
MAVKIKLQRLGKIRTPHYRVVIADARTKRDGKVIENIGIYEPKAEPSVIKINSERAQHWLSVGAQPTEAVAALLKVTGDWQKFKGIEGAEGTLRVAEPKPSKLELFNQALSEANNGPTAEAITEKKKKAREDKEAKEAAEKAAAEKAAAAEAAAESEEAPAEEAAAEEA
>NZ_CP004062.1|WP_003861911.1|2115346_2115697_+|cupin-domain-containing-protein
MTVFNVLHDAPAPQPDKNRPGVKRLLQGDGANLIAFTFSPGQSLPDHRAAHPITVTAFSGQLTFSYGEETFELSPGVTVHLEAGVTHRVDCPPEAPGDAVMLLTMLTGEKHSVNQA
>NZ_CP004062.1|WP_060564745.1|2114701_2115217_-|ribosome-maturation-factor-RimM
MSTEQELQIGKVVKSHGIRGEVVVELSTDDPDIRFAIGEVLNGKQAGKEHSLTIDAARMHQGRLLVKFAEVLDRTAADSLRGTRFFAAPLEDEDDEDGFYDHELEGLRVIHEGEDIGEVTGVVHGPAGEILEVRLTSGKETLIPFVHAIVPEVDLEEGTATITPPEGLLDL
>NZ_CP004062.1|WP_065366964.1|2127005_2130380_-|hypothetical-protein
MPAGIADMTDSLLGWASQTELDLNQRLAGVEYFPQIQLRHDELERIHRFYGTFLSRQVGAGASLEGLFEMTPCLTVTTLVSRASRISDPADFFGEYIGGLGLSAEHAAVVEGLTEKLFAQAGLLVPEGIASPLELLSIHAGISNHEVAAVLTEVENGTTEYPFMFDAVLRLTPEWAQTLIGGVQELIEFATTHRTSWSDRQRESSLPAMIDEIVVAELRERPVGTADRENSVGVALRELRPRLILDAERRKVCLRLPEQRVSDDEINWRVSLEGTTRIFSTRRAWGDTSGYSEALDITVERQIRETTVTDTSNQITWVVPVVDFNDPVLVFSARGENLTDKVSLHHQEIYVLAPAEAKLEDMVTGQPVPVIEQFLVEGWNSWVCSRVDARGLSSLKVNKEVRCIDPRRRVAFHHPAELVPHVRSISGLPVHAQSLIAEFPPTLSGQDETWMLSISAFAGVGAAGEEIAEPEPLEVPADGGLFAIFDPEIYDAPWVGEYLVRLRGPRNESFRHEFAIVEGMTTEFEVASGASFRIPTTTGLSEASLRVRSGEKHFTAEPRLVTVEATDPNTSFVVTTDEGDQMPLRFVPPQIAIELPLTTEPPTWRVTRTVCGPRDLDGAGELRIRTGVDVGDPKVSVRNHHGSPLRTVKMVTPDNGRTWIASMKEIAASTFVMPRGSIEFEWTDRKVDRRVSVTIAVIDKTENFTGISIEDGKLVFEELAAGRQLAAWVWPQTAPWVSAVELAVTGPELELPEVLVGAGNLIVQLHTADPFTTSVIPLSPGKAAVTVEQEGYYSAQTQEYAQLSAFFGGEVEEPPISDAVVPALWDVSHIWTEQGNTEHLPVVHAALRSSPAAALKGLSASLVPAQALPGKVISSGLAASPFTTESPATEVHRTAWIGTLQLLGALPSAFKEAEELGNRTPLLPILGQLEEVAGKNILSTLATGRDSTLDTACIDQSTVAIAGMNETQQKALLDMFFSNADIVPGPLMEDNTRLMAVFETFKKRDALREVLQTEGLIKTAVELLRAMRGTQRQLYSSARIRFDKLDGVNTDNPENMWALTPVVSLVFALSSRLHAHELIGKTRTLDRASAGWGRIADLVPDLVTGDLISAEAMVLGARNPGLVD
>NZ_CP004062.1|WP_060564753.1|2130523_2133991_-|chromosome-segregation-protein-SMC
MYLKSLTLKGFKSFASATTLKFEPGICAVVGPNGSGKSNVVDALAWVMGEGSAKTLRGGKMEDVIFAGAGDRKPLGRAEVTLTIDNSDGALPIEYTEVSVTRRMFRDGASEYEINGAKARLMDIQELLSDTGIGREMHIMVGQGKLAEILESRPEDRRAYIEEAAGVLKHRRRKEKAQRKLQGMQVNLDRLQDLTHELAKQLKPLARQAEAAQRAATVQADLRDARFQIAGFEIVKLSEKLETSTEREKMIREQAEAAQEQLEEATTTQMEVEMELAEITPQAEAAQQLWFDLSSLAERVSATMRIAADRASSGATDVPYAGQDPDELLGRAETADKELEELEMAVEMATERLTSIQEEAEDKAAQAREAEREHLAQVRAISDRREGVVRLLASEESLRTQHTSAEEEAERLSEQLEEFIGRILDVERERRLTDERKQGVDTDRAPLEEALKQAKHEAEAAETRLEELRTKRSDLEKEVSRLQSRIETLNQNRPRSDAADVVDYPQLATLIRPQRNVDKALAAALGAHAEALAGEAAEGLVEKLIDAGVARTIIVDGTQAGGAWRLDANIPAGASWLLDHVDLDPAIAGPVNRLLADVVLVDDPSLGRQAIEDDPRLRAVDRNGVLIGAGWIQVGTETSTVEITAQIEEAEAQLAAASAALDDIAGTFDGALHAADNTRVEAAARTAALRELDMTRDSITRDLARLDKQHEAAESERVRHVGRLHAAETRREELREQLEDIVDRLSRVEDEEDADEPSTTARDQANAELQQIRAMEMEARLAQRTAEERAGQQRGKGDSLRRQAEHERQAKIRHEQAMEARRRRTQLAAAVHNGARDVAERVSAALAQAAIERDQHNRDKALLTSHLARAKDAVSAARQHLNRLSDNAHSMELARSQAQVRMEEAVAKITEQLGIPVAELLRDYTPDENFDEKFQRARLKQAEKDLAALGKVNPLALEEFKALEERYEFLSTQLADVEQARADLSGVIEEVDAKILQLFTDAWNDVEAEFPRVFNTLFPGGEGKLILTEPDDLLATGIEVEARPPGKRVKRLSLLSGGEKSLTALAMLVAIFRARPSPFYVMDEVEAALDDVNLRRLIALFEELRRDSQLIVITHQKPTMDVANVLYGVTMRGDGVTRVISQRMEPASAMETVAG
>NZ_CP004062.1|WP_060564754.1|2134005_2134290_-|acylphosphatase
MEKVRLTAFVHGHVQGVGFRWWTTSQARELKLAGSASNLSDGRVCVVAEGPQTQCEELLRRLKENPSSYRRPGHVDTVIEQWGEPRDVKGFVER
>NZ_CP004062.1|WP_081299901.1|2134300_2136106_-|hypothetical-protein
MGRGDLKQEWKDQLSQGLARIGFPSLDDVTVLNPVYADDLWEDPEAQHSFAVPPVQKHMTLSGLELLEFERRTAAMETRLGRHNRGAGGAFPEAVVSRSVELPLFVQARNFLNNQQIRAQVHRRILEQLPTEGEIVLLGHSLGSVIAADLLRRLPPELTVKGFVTIGSPLANGQFNVDDLFKLLRTPLSNVSWWVNFWSGSDPVAAKRGVSVAVPWVLDFRVKTSLVPGPGHSSREYCANDAVAEAIGFGLFGSRSKEIVLAEKNLQIPLNDAEIFVLQALRYCYLILQRLKGDEALRYEYALRETQDRLIEEIKSRNAEEGRPIPQEIARLDFDNGDPNAAAPVPGLSPFMPKEQAIERLLEIIGQNLLLPFEIEVPEKIQREALRDFTAETQLGSTVGAGIFDALQTAVGVVSGSAKSNWRKWGAFGVGAAALTAATGGLALAAVPTVAGVATVASTLAAFGPGGMMGGLVTAGTLLTVGGGSLTAGVLSSVNTTEEIEALVVQKLSLAILWQRHEIDRTHEVWEEFAEAERLIVREHTRVKNVSDSSSPILKAFEQQRSTIERALKYLSDHGMEPGWFEELEPPAPTPFLKLRAKKTD
>NZ_CP004062.1|WP_003861930.1|2137221_2138031_+|sulfite-exporter-TauE/SafE-family-protein
MSIEWLQIVELGATFGAGFLEGSINVIVGAGTLVSFPILVFLGLPPLTATIANTIGIVPGSISGVVAYRRELRAHVKTIRFLLPASILGGITGASLLLHFSADVFTAVIPWLIGFGTLLVIAGPSVKKHVGAHTSGGISAGFRQLPFPSRTTFIVSVCGALLLGMYGGYFSAAQGILLIALLGITSTLQMQELNAIKNLTVAAVNLIAASVFIIVSPELISWPTVALIALGSALGGYIGGRYARRLRPSVFRAFVVIVGITTVIVMTIG
>NZ_CP004062.1|WP_060564757.1|2138128_2138578_-|metallopeptidase
MSFSGFEQFIGLVADRYGKPGTPHSEEQHSDYEAGTVLLGSETWHIRTARVTPTKPGAFVAFWTRNEQGETCPFDSSEACAGLLIFVQDESNFGVFRFTREQLEQQGIIRSTKHPGKRGFRVYPSWSGNLNAQAKKTQAIQTPSFELLQ
>NZ_CP004062.1|WP_065366966.1|2138587_2139205_-|cation-transporter
MSEAFDATKVRKAVLTVALLNFAYFFVEFFIALSAGSVSLLADSVDFLEDTSINLLIFISLGWPLARRAVMGKLMAIVILAPAAFAAWAAIQRFSAPQAPEVIPIIVASLGAVVINGASAIIISRVRQHGGSLGQAAFLSARNDVLINIAIIMMALITAWTTSGWPDLILGCFIILLALHAAHEVWEVSEEERLASKALAGEAID
>NZ_CP004062.1|WP_065366967.1|2139208_2140069_-|bifunctional-DNA-formamidopyrimidine-glycosylase/DNA-(apurinic-or-apyrimidinic-site)-lyase
MPELPEVEVVRRGLEDHMVGHTIVSATVLHPRAARNQLGGGPEIEANIAGLRVSAAKRRGKFLWLELIDAPSGETRPDLGLLVHLGMSGQMLIKEPDAPISPHLRAKVELDNGDEVWFVDQRTFGYWWLGDLVDGVPERVSHIATDVLDESADFFAIARNLKSRKSEIKRLLLNQEIVSGIGNIYADEMLWQAKIHPLQRADRLSLARLEELLQAGKDVMTKALAQGGTSFDALYVNVNGNSGYFALSLNAYAQTGEPCGRCRTLIIRENFMNRGSHYCPNCQKRR
>NZ_CP004062.1|WP_003861938.1|2140061_2140805_-|ribonuclease-III
MSRKKNRLTGVDALNEAFDAVDHQPLLDHLGVDIQRDLLVLALTHRSFANENGMLPNNERLEFLGDAVLGLSVANKLYEQYPSSPESDVSKMRASIVSRYGLADIAREIDLGNHILLGKGELLTEGRSKDSILADTTEALFGAIFRQHGFETARDVILRLFAYKIDNASARGIHQDWKTTLQEELAQRKRPMAEYSATSVGPDHDLVFTAIVTLEGEEMGRGEGPNKKLAEQEAAHQAFRKLRESRA
>NZ_CP004062.1|WP_003861940.1|2140801_2141338_-|DNA-binding-protein
MKSPFIFDVAALLRGSALPEHLTQSGPSPTRIGPEMIAIPEGGKVIVEAQIIPLGGGLAVEADIEAQLLGQCSRCLRELTPTKTLHVSEVFAADPDFVTGEDAADDEDELPMVNQDQIDLLQSVIDEAGLTLPFNPVCEELGYGACQDDETPAPDGVSEEVEDEEKVDPRWAGLEKFL

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Crispr_ID: NZ_CP004062_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP004062_3

2910642-2910727

Orphan

Consensus_repeat	Method
AGGTGGCTTTTAGAGGGACCGACT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP004062_3

>merge|NZ_CP004062|3|2910642-2910727|CRISPRCasFinder
AGGTGGCTTTTAGAGGGACCGACTTACCCATCGCCCGCGTCACTCATGACCGAACTCAAAGAAGGTGGCTTTTAGAGGGACCGGCT

>NZ_CP004062|3|3|2910642-2910727|CRISPRCasFinder
AGGTGGCTTTTAGAGGGACCGACT	TACCCATCGCCCGCGTCACTCATGACCGAACTCAAAGA
AGGTGGCTTTTAGAGGGACCGGCT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP004062.1\|WP_107111897.1\|2918776_2919963_-\|IS3-like-element-IS1206-family-transposase	unknown	unknown	gnl\|CDD\|222853
NZ_CP004062.1\|WP_065367125.1\|2904613_2905744_-\|glutamate--cysteine-ligase	unknown	unknown	gnl\|CDD\|237408
NZ_CP004062.1\|WP_003853699.1\|2906483_2906696_-\|DUF3263-domain-containing-protein	unknown	unknown	gnl\|CDD\|378688
NZ_CP004062.1\|WP_003862899.1\|2902915_2903191_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|181179
NZ_CP004062.1\|WP_060565236.1\|2907282_2908290_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|366181
NZ_CP004062.1\|WP_011015344.1\|2914608_2915379_-\|ABC-transporter-permease	unknown	unknown	unknown
NZ_CP004062.1\|WP_060565527.1\|2915359_2916292_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|213235
NZ_CP004062.1\|WP_003853711.1\|2903191_2903572_+\|cation:proton-antiporter	unknown	unknown	gnl\|CDD\|183613
NZ_CP004062.1\|WP_060565239.1\|2912601_2913768_+\|Na/Pi-cotransporter-family-protein	unknown	unknown	gnl\|CDD\|224202
NZ_CP004062.1\|WP_034983209.1\|2913764_2914607_-\|PhzF-family-phenazine-biosynthesis-protein	unknown	unknown	gnl\|CDD\|223461
NZ_CP004062.1\|WP_081299886.1\|2923572_2924778_-\|IS30-family-transposase	unknown	unknown	gnl\|CDD\|225382
NZ_CP004062.1\|WP_003853702.1\|2905812_2906478_-\|LytR-C-terminal-domain-containing-protein	unknown	unknown	gnl\|CDD\|379163
NZ_CP004062.1\|WP_065367126.1\|2908316_2909108_+\|exodeoxyribonuclease-III	unknown	unknown	gnl\|CDD\|197320
NZ_CP004062.1\|WP_003862894.1\|2906711_2907293_+\|peptide-deformylase	unknown	unknown	gnl\|CDD\|237227
NZ_CP004062.1\|WP_074492444.1\|2916313_2916817_-\|NUDIX-hydrolase	unknown	unknown	gnl\|CDD\|239217
NZ_CP004062.1\|WP_065367127.1\|2909114_2910617_+\|cardiolipin-synthase-A	unknown	unknown	gnl\|CDD\|234967
NZ_CP004062.1\|WP_011015349.1\|2920717_2923186_+\|serine/threonine-protein-kinase	unknown	unknown	gnl\|CDD\|319004
NZ_CP004062.1\|WP_065367124.1\|2904007_2904607_-\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|223669
NZ_CP004062.1\|WP_075348530.1\|2917011_2918400_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP004062.1\|WP_060565238.1\|2911011_2912208_-\|multidrug-effflux-MFS-transporter	unknown	unknown	gnl\|CDD\|340878

Protein	Function_ID	Function_description	E-value
NZ_CP004062.1\|WP_107111897.1\|2918776_2919963_-\|IS3-like-element-IS1206-family-transposase	gnl\|CDD\|222853	PHA02517, PHA02517, putative transposase OrfB; Reviewed.	5.07494e-51
NZ_CP004062.1\|WP_065367125.1\|2904613_2905744_-\|glutamate--cysteine-ligase	gnl\|CDD\|237408	PRK13517, PRK13517, glutamate--cysteine ligase.	0
NZ_CP004062.1\|WP_003853699.1\|2906483_2906696_-\|DUF3263-domain-containing-protein	gnl\|CDD\|378688	pfam11662, DUF3263, Protein of unknown function (DUF3263). This family of proteins with unknown function appears to be restricted to Actinobacteria.	3.49121e-25
NZ_CP004062.1\|WP_003862899.1\|2902915_2903191_+\|hypothetical-protein	gnl\|CDD\|181179	PRK07948, PRK07948, putative monovalent cation/H+ antiporter subunit F; Reviewed.	4.78942e-38
NZ_CP004062.1\|WP_060565236.1\|2907282_2908290_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	2.68058e-10
NZ_CP004062.1\|WP_074492444.1\|2916313_2916817_-\|NUDIX-hydrolase	gnl\|CDD\|239217	cd02883, Nudix_Hydrolase, Nudix hydrolase is a superfamily of enzymes found in all three kingdoms of life, and it catalyzes the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+ for their activity. Members of this family are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolase include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance and "house-cleaning" enzymes. Substrate specificity is used to define child families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. This superfamily consists of at least nine families: IPP (isopentenyl diphosphate) isomerase, ADP ribose pyrophosphatase, mutT pyrophosphohydrolase, coenzyme-A pyrophosphatase, MTH1-7,8-dihydro-8-oxoguanine-triphosphatase, diadenosine tetraphosphate hydrolase, NADH pyrophosphatase, GDP-mannose hydrolase and the c-terminal portion of the mutY adenine glycosylase.	4.6603e-16
NZ_CP004062.1\|WP_060565527.1\|2915359_2916292_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|213235	cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter. The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.	1.28038e-94
NZ_CP004062.1\|WP_003853711.1\|2903191_2903572_+\|cation:proton-antiporter	gnl\|CDD\|183613	PRK12592, PRK12592, putative monovalent cation/H+ antiporter subunit G; Reviewed.	2.61795e-74
NZ_CP004062.1\|WP_060565239.1\|2912601_2913768_+\|Na/Pi-cotransporter-family-protein	gnl\|CDD\|224202	COG1283, NptA, Na+/phosphate symporter [Inorganic ion transport and metabolism].	4.15863e-96
NZ_CP004062.1\|WP_034983209.1\|2913764_2914607_-\|PhzF-family-phenazine-biosynthesis-protein	gnl\|CDD\|223461	COG0384, COG0384, Predicted epimerase, PhzC/PhzF homolog [General function prediction only].	8.50827e-101
NZ_CP004062.1\|WP_081299886.1\|2923572_2924778_-\|IS30-family-transposase	gnl\|CDD\|225382	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair].	1.77403e-138
NZ_CP004062.1\|WP_003853702.1\|2905812_2906478_-\|LytR-C-terminal-domain-containing-protein	gnl\|CDD\|379163	pfam13399, LytR_C, LytR cell envelope-related transcriptional attenuator. This family appears at the C-terminus of members of the LytR_cpsA_psr, pfam03816, family.	0.0014775
NZ_CP004062.1\|WP_065367126.1\|2908316_2909108_+\|exodeoxyribonuclease-III	gnl\|CDD\|197320	cd09086, ExoIII-like_AP-endo, Escherichia coli exonuclease III (ExoIII) and Neisseria meningitides NExo-like subfamily of the ExoIII family purinic/apyrimidinic (AP) endonucleases. This subfamily includes Escherichia coli ExoIII, Neisseria meningitides NExo,and related proteins. These are ExoIII family AP endonucleases and they belong to the large EEP (exonuclease/endonuclease/phosphatase) superfamily that contains functionally diverse enzymes that share a common catalytic mechanism of cleaving phosphodiester bonds. AP endonucleases participate in the DNA base excision repair (BER) pathway. AP sites are one of the most common lesions in cellular DNA. During BER, the damaged DNA is first recognized by DNA glycosylase. AP endonucleases then catalyze the hydrolytic cleavage of the phosphodiester bond 5' to the AP site, and this is followed by the coordinated actions of DNA polymerase, deoxyribose phosphatase, and DNA ligase. If left unrepaired, AP sites block DNA replication, and have both mutagenic and cytotoxic effects. AP endonucleases can carry out a variety of excision and incision reactions on DNA, including 3'-5' exonuclease, 3'-deoxyribose phosphodiesterase, 3'-phosphatase, and occasionally, nonspecific DNase activities. Different AP endonuclease enzymes catalyze the different reactions with different efficiencies. Many organisms have two AP endonucleases, usually one is the dominant AP endonuclease, the other has weak AP endonuclease activity. For example, Neisseria meningitides Nape and NExo, and exonuclease III (ExoIII) and endonuclease IV (EndoIV) in Escherichia coli. NExo and ExoIII are found in this subfamily. NExo is the non-dominant AP endonuclease. It exhibits strong 3'-5' exonuclease and 3'-deoxyribose phosphodiesterase activities. Escherichia coli ExoIII is an active AP endonuclease, and in addition, it exhibits double strand (ds)-specific 3'-5' exonuclease, exonucleolytic RNase H, 3'-phosphomonoesterase and 3'-phosphodiesterase activities, all catalyzed by a single active site. Class II AP endonucleases have been classified into two families, designated ExoIII and EndoIV, based on their homology to the Escherichia coli enzymes ExoIII and endonuclease IV (EndoIV). This subfamily belongs to the ExoIII family; the EndoIV family belongs to a different superfamily.	1.65957e-104
NZ_CP004062.1\|WP_003862894.1\|2906711_2907293_+\|peptide-deformylase	gnl\|CDD\|237227	PRK12846, PRK12846, peptide deformylase; Reviewed.	6.52209e-77
NZ_CP004062.1\|WP_065367127.1\|2909114_2910617_+\|cardiolipin-synthase-A	gnl\|CDD\|234967	PRK01642, cls, cardiolipin synthetase; Reviewed.	2.12836e-116
NZ_CP004062.1\|WP_011015349.1\|2920717_2923186_+\|serine/threonine-protein-kinase	gnl\|CDD\|319004	pfam16918, PknG_TPR, Protein kinase G tetratricopeptide repeat. This domain is found at the C-terminus of protein kinase G and contains a tetratricopeptide repeat (TPR).	3.85826e-95
NZ_CP004062.1\|WP_065367124.1\|2904007_2904607_-\|alpha/beta-hydrolase	gnl\|CDD\|223669	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only].	1.67381e-06
NZ_CP004062.1\|WP_060565238.1\|2911011_2912208_-\|multidrug-effflux-MFS-transporter	gnl\|CDD\|340878	cd17320, MFS_MdfA_MDR_like, Multidrug transporter MdfA and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily. This family is composed of bacterial multidrug resistance (MDR) transporters including several proteins from Escherichia coli such as MdfA (also called chloramphenicol resistance pump Cmr), EmrD, MdtM, MdtL, bicyclomycin resistance protein (also called sulfonamide resistance protein), and the uncharacterized inner membrane transport protein YdhC. EmrD is a proton-dependent secondary transporter, first identified as an efflux pump for uncouplers of oxidative phosphorylation. It expels a range of drug molecules and amphipathic compounds across the inner membrane of E. coli. Similarly, MdfA is a secondary multidrug transporter that exports a broad spectrum of structurally and electrically dissimilar toxic compounds. These MDR transporters are drug/H+ antiporters (DHA) belonging to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	3.30364e-100

>NZ_CP004062.1|WP_065367127.1|2909114_2910617_+|cardiolipin-synthase-A
MIFQINLESWQTVGLIIDYTIKIIAIGYVPEGRRPSSSTAWLLAILLLPYVGLSLFLLMGSPYINRRRHRIQQEINDLIEDVHDDVPDIPTGMDVSAEVESVIKLNRRLTRMPAVTGGNNGFYSDYRESLKRMTAAIDEAEEYIYVEIYIMAWDSCTQPFFAALERAHNRGVQVRLLFDHVGSWKYPGYHRLKKELNRMGFAWYLMLPLQPWRRRFRRPDLRNHRKMLIIDGHTAFMGSQNLIAPSYLQKKNIKLGREWKDLMVELTGPIVSSMEMIFAGDWYVESNEALDIRDHAEAHGYIGNTQKDSATNLVQLIPSGPGYTTEPNLRMFNSIVHHAKERLILCSPYFIPDESLLEAVTSACYRGVTVELFVSEQADQFAIDHAQSSYYQALLEAGVKIYQFPKPDVLHTKYMIADPDDTTGNEALGVLGSSNLDIRSFGLNYEISLMIAKGNLIHELNALTDRYRTVSLKLTLDKWNQRSWRRRYVDNVMRLTSALQ
>NZ_CP004062.1|WP_065367126.1|2908316_2909108_+|exodeoxyribonuclease-III
MRIVNWNINSARTRVDRMVDFLLRHDVDVLAVQETKCKDEQFPTERFTEIGYEVAHFGLNQWNGVAIISRVGIENVETHFPAQPGFNKDITKEQSIEARAIGARCGGVQVWSLYVPNGREIADPHYDYKLRWLFSLRNYVIDTLEYRPEEKLVLLGDFNIAPTDIDVWDIAAFEGKTHVTEPERAAFDGLIEAGLKETTPGPGTYTYWDYKGARFLKGEGMRIDFQLASPALAATAGETFVDVEERSGTGASDHAPVIVDYKV
>NZ_CP004062.1|WP_060565236.1|2907282_2908290_+|GNAT-family-N-acetyltransferase
MTPSLPRFRSQKPAVGDRVVARRRIPGANVHWTDAIGHVIGVDPLVVRPQSVGGMPSDAEEIVIPDDQLEVIKILSPRTIRNSDIRAVEVATAKAFPGLVNEWHDGWLLRAGDGIAERSNSASPLGPSVGFEPVPMEDISRFYARHDLPVKLHIPERIGRPAQKVIDADPQKWVMGPEILVMTKSLDHVESHELPGGLEFSVDKQPDQEWLGMYHFRGQALPAHALELLRTQIEGRMGFGRLTTPAGQTVAITRATITAAEERIFLGYSAVEVDPAFRRQGLGTALGSRIQEWGAEQHAQEAYLQVVAHNEAGIGLYQKLGFSEHHRHRYAERKF
>NZ_CP004062.1|WP_003862894.1|2906711_2907293_+|peptide-deformylase
MTVRPIVIHGDPVLHNPTQLVTEDVSELQELIADMYETMDVANGVGLAANQIGVSKRIFVYDCPDDEGVMHKGCFINPVLETSEIPETMPADDGSDEEGCLSVPGEGFPTGRAHWAKVTGLNEKGEEVSVEAEGFLARCFQHEVGHLDGFLYTDVLIGRWKRMAKKAIKANGWTEPGLTWMPGEDEDPFGHDA
>NZ_CP004062.1|WP_003853699.1|2906483_2906696_-|DUF3263-domain-containing-protein
MLSADDLTLLEFEAHAPHAIGAKEEAIRATFGISPVRYYQRLNVIIDTPEAMKVNPTLVSRLRRRAGKID
>NZ_CP004062.1|WP_003853702.1|2905812_2906478_-|LytR-C-terminal-domain-containing-protein
MTSDMQNSPQHSATPSEEKQGGLPMRGLAMILIAVAVLLAAWALWSMQGKDDTSTTSAGQTQSTETNAGTIAESSGSSDSEQASAEPGTSEETSAEQPAADGEAANAAGTAAAGGASSANGNSTPVNTLYVLNNSTVPQLAARVADSLSGDYQKVESGNLPDTIIPQNTVYFTAGNTEAEKAARELADRVSGVAMERSDALPTETEGKDALVLVLVQDVAL
>NZ_CP004062.1|WP_065367125.1|2904613_2905744_-|glutamate--cysteine-ligase
MGIEFKRSPRPTLGVEWEIALVDPETRDLAPRAAEILEIVAKNHPEVHLEREFLQNTVELVTGVCDTVPEAVAELSHDLDALKEAADSLGLRLWTSGSHPFSDFRENPVSEKGSYDEIIARTQYWGNQMLIWGIHVHVGISHEDRVWPIINALLTNYPHLLALSASSPAWDGLDTGYASNRTMLYQQLPTAGLPYQFQSWDEWCSYMADQDKSGVINHTGSMHFDIRPASKWGTIEVRVADYTSNLRELSAIVALTHCLVVHYDRMIDAGEELPSLQQWHVSENKWRAARYGLDAEIIISRDTDEAMVQDELRRLVAQLMPLANELGCARELELVLEILERGGGYERQRRVFKETGSWKAAVDLACDELNDLKALD
>NZ_CP004062.1|WP_065367124.1|2904007_2904607_-|alpha/beta-hydrolase
MVESQHIIFIPESQQTPDEFTEVVNEIPAGIKPRIVPWSGSVSAGVQAVESILDREEIRRVILVGAGTGAGVALEIAKNQPRRVERLVLDSPLVTFDEKQLKDMSTALKMMPGFFFRKKNKKDLLQQVEEARTAVPMGFSEITMPTLIIRGSAAKAGIDSDLEKQIPSARATTIIGANWLTYTTHGRQTGAAIAEFLAQ
>NZ_CP004062.1|WP_003853711.1|2903191_2903572_+|cation:proton-antiporter
MTLQLFTDIVSLVFILSGAFLSFSASIGLIRFKDTMSRVHAMTKPQTTGLILTVVGAIIRILGHEHFDQSQRSDLGVLVLLVLFALLTSPVTAQRVGRVSRREGLYGAKDDMSDNQAPAELKPKKS
>NZ_CP004062.1|WP_003862899.1|2902915_2903191_+|hypothetical-protein
MDNTLYTAGLTIAAAFFMLSFIFTIYRIIVGPNSIDRLLGLDGTVSMIQCSMATYICWTLDTTVTNFMMVIALLGFISSVSVARFRKRDGA
>NZ_CP004062.1|WP_060565238.1|2911011_2912208_-|multidrug-effflux-MFS-transporter
MQKKQQLSTALIMGLALLSASSALATDMYLPAMPGIAEDLGTTAPMVQLTLSSFMAGMAIGQLIIGPLSDQLGRKGLLVAGAVAALVASVVCALAPSISVLVIARLVQGLGGGACVVIARAIVPDLERGQKAAHAFALLMIIQGIAPVVAPLIGGVLVGPFGWRGIFWALALVNFAQLLVALLQIKESKPVEERTAAGLGGMLSNYVFVLKNPQFLAYVFTLGLSFGAMFSYISASPFVLQNQMGIPVLLYSIIFGVNAFGLIVGGMVNRRLLQRIHPHRIMQTVLASFTVLCALLLIEVLFINWIPLFLVLLFLIVSHIPMVMANATALGTEVVRSRAGSGSAILGFVQFTMGALVSSLVGLGSDKALTMGIAMTACALLACGCAYLAGRKGIPEMK
>NZ_CP004062.1|WP_060565239.1|2912601_2913768_+|Na/Pi-cotransporter-family-protein
MLLSGWGKFVRWLLVLLSILVIIIGINLILDGVYGFGTFSTTQMYQVAKDPLIGVLIGILATALVQSSTTTTTLTVTAVGTGIVSVPVAIPIILGANIGTTITAMLVAFSYVGERREFKRAFTVAAMHVWFNVLVILVLFVVELLFHPFRTISGAIATEITLTTGGSLPTSDVMTKIFDPPTQLLGMNGLIGSIGNPSISAIVCLVVGTILILISVRAMSSQIRTITAATVTSIMDKVINPENSPKATILSNFWSFILGVLFTLMVTASSVTVASMQPVAVSGVVKQKPLLGVILGANVGTTVTAMFATFAIVSDQGEFAIQAALIHLIVNFTGALLVLCIPQLANVIIHLAEKTANLTARSYSITLATIVTAYVLVPSAVLMIYFFI
>NZ_CP004062.1|WP_034983209.1|2913764_2914607_-|PhzF-family-phenazine-biosynthesis-protein
MPSKISRPYYQVDVFSSEPFMGNPLAVIADADDLSAEQMARIARWTNLSETTFLLKPTQEGADYRVRIFTPTGELPFAGHPTLGTAHVFRELHGEQGTQLVQECVAGLVAVRAIDGPASGLAFQAPPTLKDGPLDASDLDAACEALGISPDFIRAHQWVDNGPGWAVVELPSAQHVLDLEPDFSAHPTLKLGVIGAYPEGAPHAFEVRAFAPGIGEDPVTGSLNASIAQWLHRDGRAGEGYLASQGTAIGRAGEIHISIESHVIWVGGSVTTIFQGTAEF
>NZ_CP004062.1|WP_011015344.1|2914608_2915379_-|ABC-transporter-permease
MWTTMINTIRSEWTKLVTTKSFWWTTALILVFSLGYAALTGSLATGESFASLFLLAGSTVTGLYLLGFVVIMIQSIMMFTTEFRFGYQTQTFLATPKRWVVAVSKWLLYLVFAVVLTFITVILCFYLAKALASDTASSTLVVWEDTQARRIMWQYPLAAALLVTFCSGIALLLRQTAGAVALVLMWHFAIENLLSFLPRIGEYVGKYGPFTNLYAFITDYQSIDPGWSTTMGAVYFGAWAFVLFALGIVVLEKKDA
>NZ_CP004062.1|WP_060565527.1|2915359_2916292_-|ABC-transporter-ATP-binding-protein
MINVEGLTKQYGQVRAVDDLSFEVKPGIVTGFLGPNGAGKSTTMRLILGLDNPTAGHATIEGQPYRSLKNPLTKVGALLDAKATHPNRTAENHLKWIARANGLSTKRVDEVLTLVGLTGVASKKTGGFSLGMGQRLGLAAALLGDPEYLILDEPVNGLDPEGIHWVRTLLQNIAKQGRTVLVSSHLLSEMAQTAEHLIVIGRGKLVADMPMHEFVRSHSASTVVVRAAVPGALESALKEAGVAFNTAPDESGRMTYRIDGSTTDDIGRLAFERGIALLELSETRASLEEAFLETTGEAVQYQAGSVDNND
>NZ_CP004062.1|WP_074492444.1|2916313_2916817_-|NUDIX-hydrolase
MDTMKGDGDGWAAAPNGGAVWGKNGAAGLLLVADKQMLMQHRAAWTNNGDTWALPGGARDSHETAAESALREAFEETGILPDDVEVLDSIVTAGPFPADPERPELAGNWTYTTVIARTKTGETLETTANEESLELRWVDIAAVDSLALMPAFAKAWPSLRKLLNTTE
>NZ_CP004062.1|WP_075348530.1|2917011_2918400_+|hypothetical-protein
MDTDDSSDHWLDPLTEKDTSKRTLVNSIVQETFGQPIFVARKIWAFVNTSPGRMTLMTIIISIAIFAAGYAMSVSSDTRQSNLDDLITNAEPVSYNAHVLYTSLAVADTTATTGFVQAGVEGPVNRVKYHTAIDRAAVAATHTAASADSSNEHLMELVLEIQRQLPVYTGLVETARTNNRAGNPVGVAYMSEASAMMRNEILPMASELYNLTSRAVSDQQRSVTGPQWFPLSGLLAALAMLVVAQWWLMRITRRRINKGFALATVMMMTATLWVSAANWATWQAGTKGFEEASGPLNSMTTARIYAQQTRTTETLSLVRRQSIQGSGTGFTATINQIKRALDEYETTAQSQTPEHQQLITAIRNAIAAWTADHDEFTVLLASGEYNGAVSAVLNKDEEGQTSFDELDTALAELIADSRSSMRSYIQSGLQATELVSVMVMLLSVVSVLALWVGIRPRLQEYL
>NZ_CP004062.1|WP_107111897.1|2918776_2919963_-|IS3-like-element-IS1206-family-transposase
MPRKTYTEEFKRDAVALYENSPEASIQTIATDLGVNRATLANWVKKYGTAAPNETPSPASVNEAEQIRKLERENARLREERDILRKAAKYFGGRDELVIRFRFVDDASKTYSVKRICDVLKLNRSSYYKWKSTCSARRKRLMSDAILGARVKAVFTTENGCYGAKRITAELKDQVDHDPVNHKRVARVMRSLKLFGYTKKRKVTTTVSDKTKTVFPDLVGRKFTANKPNQVYVGDITYLPIADGSNMYLATVIDCYSRRLVGFSIADHMRTSLVQDALLMAKGQRGSLTGAIFHSDHGSVYTSHAFQDTCKDLGIRQSMGSIGTSADNALAESFNAALKREVLQDSKTFMNQLRCRRDVFRWCTRYNMVRRHSWCKYLAPAVFEKRCPAILKSAS
>NZ_CP004062.1|WP_011015349.1|2920717_2923186_+|serine/threonine-protein-kinase
MKDNEDFDPDSPATEAVAFNPFDDDDEDDSPATSAVAFNPFEDDDDDDEFQGEGLEFLLRDLDNLRATQGQMVVEQPAVEDSLGSASAHTETTAASLRPRPEVDPSERSRRQAISLFRERRRVRRQSRPVADGMVELPFITPKPEDELLIDPEKKRKPGVAAPQLVAGDIVAEQYEVLGVIAHGGMGWIYLANDRNVSGRIVVLKGMMAQSSVQDQGTAEAEREFLADITHPGIVKAYNFIDDPRVPGGFIVMEYVNGPSLKDRCKAQPDGVLRVDLAIGYILELLPAMDYLHQRGVVYNDLKPENVIATEDQVKLIDLGAVTGIGAFGYIYGTKGFQAPEVATHGPSISSDIFTIGRTLAALTMPLPVEDGVLAPGIPSPKNSPLLRRHLSFYRLLQRATADDPQHRFRNVSELRTQLYGVLREILAVRDGKQYPPQHSLFSPQRSTFGTKHLVFRTDRIIDGIERQARITAPEIVSALPVPLIDRTDPGARMLSGSSYAEPSETLETLRNSMEDEQYRQSIEIPLGVVRALLDLGFTTEARQWLETLEGRIGDDWRHKWFSGITYLLLDDYATAQVFFNHVLTILPGEAAPKLALAAVDELILQQIGAESTAYLTPDIVSATATLSKDFEDLDASAFESLSDTWSHISSDPHVVRFHSLRLYALVWATNPTTVSSAFGLARQLMAENQIELAVQALDKLPQSSTHYRMATLTTILLLVSSNLSESRIRRAARRLTEIPTNEPRFNQIKIAIMSAGLSWLRERKLKASASANPLFEYPFSQKGLRTGISEALRIQARSAPFPHHRYALVDMANAVRPLSWF
>NZ_CP004062.1|WP_081299886.1|2923572_2924778_-|IS30-family-transposase
MGPYYGPRTLHQVLREDYTTLFNELSSLGLPAQVCGALLHLTQRPSLRFSYMSCVVPLFADEIKVVGQGTRLSLEEKMMIQRFHDTGVSAAEIGRRLGRCRQTISRELRRGQDDDGCYRARDSYEGAIRKLARPKTPKLDANRRLRAVVVEALNKKLSPEQISGLLATEHANDSSMQISHETIYQALYVQGKGALRDELKVEKFLRTGRKGRKPQSKLPSRGKPWVEGALISQRPAEVDDRAVPGHWEGDLVIGGENQATALVTLVERTSRLTLIKRLGVNHEASTVTDALVEMMGDLPQALRRSLTWDQGVEMAEHARFSVVTKCPVFFCDPHSPWQRGSNENTNGLVRDFFPKGTNFAKVSDEEVQRAQDLLNYRPRKMHGFKSAAQVYEKIVVGASTD

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP004062_2	2.1\|2125819\|31\|NZ_CP004062\|CRISPRCasFinder	2125819-2125849	31	NZ_CP045356	Vibrio sp. THAF64 plasmid pTHAF64_a, complete sequence	1524333-1524363	7	0.774
NZ_CP004062_2	2.1\|2125819\|31\|NZ_CP004062\|CRISPRCasFinder	2125819-2125849	31	NZ_CP046163	Vibrio sp. THAF191c plasmid pTHAF191c_b, complete sequence	52186-52216	7	0.774
NZ_CP004062_2	2.1\|2125819\|31\|NZ_CP004062\|CRISPRCasFinder	2125819-2125849	31	NZ_CP046066	Vibrio sp. THAF191d plasmid pTHAF191d_b, complete sequence	236476-236506	7	0.774
NZ_CP004062_2	2.1\|2125819\|31\|NZ_CP004062\|CRISPRCasFinder	2125819-2125849	31	NZ_CP012944	Ralstonia solanacearum strain IBSBF1503 plasmid unnamed, complete sequence	613693-613723	8	0.742
NZ_CP004062_2	2.1\|2125819\|31\|NZ_CP004062\|CRISPRCasFinder	2125819-2125849	31	NC_017575	Ralstonia solanacearum Po82 megaplasmid, complete sequence	959093-959123	8	0.742
NZ_CP004062_2	2.1\|2125819\|31\|NZ_CP004062\|CRISPRCasFinder	2125819-2125849	31	NZ_CP026308	Ralstonia solanacearum strain IBSBF 2571 plasmid unnamed, complete sequence	959038-959068	8	0.742
NZ_CP004062_2	2.1\|2125819\|31\|NZ_CP004062\|CRISPRCasFinder	2125819-2125849	31	NZ_CP021653	Ralstonia solanacearum strain RS 488 plasmid unnamed, complete sequence	1487687-1487717	8	0.742
NZ_CP004062_2	2.1\|2125819\|31\|NZ_CP004062\|CRISPRCasFinder	2125819-2125849	31	NZ_CP012940	Ralstonia solanacearum strain UW163 plasmid unnamed, complete sequence	1229220-1229250	8	0.742
NZ_CP004062_2	2.1\|2125819\|31\|NZ_CP004062\|CRISPRCasFinder	2125819-2125849	31	NZ_CP012688	Ralstonia solanacearum strain UY031 plasmid unnamed, complete sequence	1487694-1487724	8	0.742
NZ_CP004062_2	2.1\|2125819\|31\|NZ_CP004062\|CRISPRCasFinder	2125819-2125849	31	CP047139	Ralstonia solanacearum strain CFBP 8695 plasmid unnamed, complete sequence	1397930-1397960	8	0.742
NZ_CP004062_2	2.1\|2125819\|31\|NZ_CP004062\|CRISPRCasFinder	2125819-2125849	31	NZ_CP051295	Ralstonia solanacearum strain CIAT_078 plasmid megaplasmid, complete sequence	1217652-1217682	8	0.742
NZ_CP004062_2	2.1\|2125819\|31\|NZ_CP004062\|CRISPRCasFinder	2125819-2125849	31	CP047137	Ralstonia solanacearum strain CFBP 8697 plasmid unnamed, complete sequence	1343202-1343232	8	0.742
NZ_CP004062_2	2.1\|2125819\|31\|NZ_CP004062\|CRISPRCasFinder	2125819-2125849	31	NZ_CP016613	Ralstonia solanacearum FJAT-91 plasmid unnamed1, complete sequence	1229871-1229901	10	0.677
NZ_CP004062_2	2.1\|2125819\|31\|NZ_CP004062\|CRISPRCasFinder	2125819-2125849	31	NZ_CP021449	Ralstonia solanacearum strain SEPPX05 plasmid pSEPPX05, complete sequence	1249886-1249916	10	0.677
NZ_CP004062_2	2.1\|2125819\|31\|NZ_CP004062\|CRISPRCasFinder	2125819-2125849	31	NZ_CP049790	Ralstonia solanacearum strain 202 plasmid unnamed, complete sequence	664960-664990	10	0.677
NZ_CP004062_2	2.1\|2125819\|31\|NZ_CP004062\|CRISPRCasFinder	2125819-2125849	31	NZ_CP049788	Ralstonia solanacearum strain B2 plasmid unnamed, complete sequence	416491-416521	10	0.677
NZ_CP004062_2	2.1\|2125819\|31\|NZ_CP004062\|CRISPRCasFinder	2125819-2125849	31	NZ_CP016915	Ralstonia solanacearum strain CQPS-1 plasmid unnamed, complete sequence	1260481-1260511	10	0.677
NZ_CP004062_2	2.1\|2125819\|31\|NZ_CP004062\|CRISPRCasFinder	2125819-2125849	31	NZ_CP015851	Ralstonia solanacearum strain YC40-M plasmid, complete sequence	985202-985232	10	0.677
NZ_CP004062_2	2.1\|2125819\|31\|NZ_CP004062\|CRISPRCasFinder	2125819-2125849	31	NZ_CP022482	Ralstonia solanacearum strain HA4-1 plasmid HA4-1MP, complete sequence	1632994-1633024	10	0.677
NZ_CP004062_2	2.1\|2125819\|31\|NZ_CP004062\|CRISPRCasFinder	2125819-2125849	31	NZ_CP022781	Ralstonia solanacearum strain SL3822 plasmid unnamed, complete sequence	556903-556933	10	0.677
NZ_CP004062_2	2.1\|2125819\|31\|NZ_CP004062\|CRISPRCasFinder	2125819-2125849	31	CP011998	Ralstonia solanacearum strain YC45 plasmid, complete sequence	1499836-1499866	10	0.677
NZ_CP004062_2	2.1\|2125819\|31\|NZ_CP004062\|CRISPRCasFinder	2125819-2125849	31	NZ_CP052111	Ralstonia solanacearum strain FJAT15244.F50 plasmid Plas1, complete sequence	549100-549130	10	0.677
NZ_CP004062_2	2.1\|2125819\|31\|NZ_CP004062\|CRISPRCasFinder	2125819-2125849	31	NZ_CP052113	Ralstonia solanacearum strain FJAT15244.F1 plasmid Plas1, complete sequence	549100-549130	10	0.677
NZ_CP004062_2	2.1\|2125819\|31\|NZ_CP004062\|CRISPRCasFinder	2125819-2125849	31	NZ_CP022775	Ralstonia solanacearum strain T12 plasmid unnamed, complete sequence	1419903-1419933	10	0.677
NZ_CP004062_2	2.1\|2125819\|31\|NZ_CP004062\|CRISPRCasFinder	2125819-2125849	31	NC_014310	Ralstonia solanacearum PSI07 plasmid mpPSI07, complete sequence	1476051-1476081	10	0.677
NZ_CP004062_2	2.1\|2125819\|31\|NZ_CP004062\|CRISPRCasFinder	2125819-2125849	31	NZ_CP022762	Ralstonia solanacearum strain T95 plasmid unnamed, complete sequence	1342348-1342378	10	0.677
NZ_CP004062_2	2.1\|2125819\|31\|NZ_CP004062\|CRISPRCasFinder	2125819-2125849	31	NZ_CP049794	Ralstonia solanacearum strain 204 plasmid unnamed, complete sequence	2006888-2006918	10	0.677
NZ_CP004062_2	2.1\|2125819\|31\|NZ_CP004062\|CRISPRCasFinder	2125819-2125849	31	NZ_CP022766	Ralstonia solanacearum strain T78 plasmid unnamed, complete sequence	1476932-1476962	10	0.677
NZ_CP004062_2	2.1\|2125819\|31\|NZ_CP004062\|CRISPRCasFinder	2125819-2125849	31	NC_007974	Cupriavidus metallidurans CH34 megaplasmid, complete sequence	1458261-1458291	10	0.677
NZ_CP004062_2	2.1\|2125819\|31\|NZ_CP004062\|CRISPRCasFinder	2125819-2125849	31	NZ_CP021763	Ralstonia pseudosolanacearum strain RS 476 plasmid unnamed, complete sequence	1481230-1481260	10	0.677
NZ_CP004062_2	2.1\|2125819\|31\|NZ_CP004062\|CRISPRCasFinder	2125819-2125849	31	NZ_CP046333	Cupriavidus metallidurans strain FDAARGOS_675 plasmid unnamed3	243816-243846	10	0.677
NZ_CP004062_2	2.1\|2125819\|31\|NZ_CP004062\|CRISPRCasFinder	2125819-2125849	31	NZ_CP015116	Ralstonia solanacearum strain EP1 plasmid unnamed, complete sequence	1656121-1656151	10	0.677
NZ_CP004062_2	2.1\|2125819\|31\|NZ_CP004062\|CRISPRCasFinder	2125819-2125849	31	NZ_CP049792	Ralstonia solanacearum strain 203 plasmid unnamed, complete sequence	1782049-1782079	10	0.677
NZ_CP004062_2	2.1\|2125819\|31\|NZ_CP004062\|CRISPRCasFinder	2125819-2125849	31	NZ_CP052069	Ralstonia solanacearum strain FJAT91.F50 plasmid Plas1, complete sequence	1401043-1401073	10	0.677
NZ_CP004062_2	2.1\|2125819\|31\|NZ_CP004062\|CRISPRCasFinder	2125819-2125849	31	NZ_CP016905	Ralstonia solanacearum strain KACC 10709 plasmid unnamed1	480719-480749	10	0.677
NZ_CP004062_2	2.1\|2125819\|31\|NZ_CP004062\|CRISPRCasFinder	2125819-2125849	31	NZ_CP025986	Ralstonia solanacearum strain RSCM plasmid p-unname2, complete sequence	1919265-1919295	10	0.677
NZ_CP004062_2	2.1\|2125819\|31\|NZ_CP004062\|CRISPRCasFinder	2125819-2125849	31	NZ_CP022769	Ralstonia solanacearum strain T60 plasmid unnamed, complete sequence	1484381-1484411	10	0.677
NZ_CP004062_2	2.1\|2125819\|31\|NZ_CP004062\|CRISPRCasFinder	2125819-2125849	31	NZ_CP023017	Ralstonia solanacearum strain SL3022 plasmid unnamed, complete sequence	1404555-1404585	10	0.677
NZ_CP004062_2	2.1\|2125819\|31\|NZ_CP004062\|CRISPRCasFinder	2125819-2125849	31	NZ_CP022773	Ralstonia solanacearum strain T42 plasmid unnamed, complete sequence	1194038-1194068	10	0.677
NZ_CP004062_2	2.1\|2125819\|31\|NZ_CP004062\|CRISPRCasFinder	2125819-2125849	31	NZ_CP022791	Ralstonia solanacearum strain SL3103 plasmid unnamed, complete sequence	1446036-1446066	10	0.677
NZ_CP004062_2	2.1\|2125819\|31\|NZ_CP004062\|CRISPRCasFinder	2125819-2125849	31	NZ_CP014703	Ralstonia solanacearum strain KACC 10722 plasmid, complete sequence	1341370-1341400	10	0.677
NZ_CP004062_2	2.1\|2125819\|31\|NZ_CP004062\|CRISPRCasFinder	2125819-2125849	31	NZ_CP022760	Ralstonia solanacearum strain T98 plasmid unnamed, complete sequence	1386741-1386771	10	0.677
NZ_CP004062_2	2.1\|2125819\|31\|NZ_CP004062\|CRISPRCasFinder	2125819-2125849	31	NZ_CP022789	Ralstonia solanacearum strain SL3175 plasmid unnamed, complete sequence	1386732-1386762	10	0.677
NZ_CP004062_2	2.1\|2125819\|31\|NZ_CP004062\|CRISPRCasFinder	2125819-2125849	31	NZ_CP022771	Ralstonia solanacearum strain T51 plasmid unnamed, complete sequence	1342340-1342370	10	0.677
NZ_CP004062_2	2.1\|2125819\|31\|NZ_CP004062\|CRISPRCasFinder	2125819-2125849	31	NZ_CP022777	Ralstonia solanacearum strain T11 plasmid unnamed, complete sequence	1341693-1341723	10	0.677
NZ_CP004062_2	2.1\|2125819\|31\|NZ_CP004062\|CRISPRCasFinder	2125819-2125849	31	NZ_CP022799	Ralstonia solanacearum strain SL2064 plasmid unnamed, complete sequence	1342331-1342361	10	0.677
NZ_CP004062_2	2.1\|2125819\|31\|NZ_CP004062\|CRISPRCasFinder	2125819-2125849	31	NZ_CP009763	Ralstonia solanacearum OE1-1 plasmid unnamed, complete sequence	1371136-1371166	10	0.677
NZ_CP004062_2	2.1\|2125819\|31\|NZ_CP004062\|CRISPRCasFinder	2125819-2125849	31	NZ_CP022779	Ralstonia solanacearum strain SL3882 plasmid unnamed, complete sequence	1495862-1495892	10	0.677
NZ_CP004062_2	2.1\|2125819\|31\|NZ_CP004062\|CRISPRCasFinder	2125819-2125849	31	NZ_CP052085	Ralstonia solanacearum strain FJAT15353.F8 plasmid Plas1, complete sequence	1461408-1461438	10	0.677
NZ_CP004062_2	2.1\|2125819\|31\|NZ_CP004062\|CRISPRCasFinder	2125819-2125849	31	NZ_CP052095	Ralstonia solanacearum strain FJAT15340.F1 plasmid Plas1, complete sequence	1494251-1494281	10	0.677
NZ_CP004062_2	2.1\|2125819\|31\|NZ_CP004062\|CRISPRCasFinder	2125819-2125849	31	NZ_CP052077	Ralstonia solanacearum strain FJAT445.F50 plasmid Plas1, complete sequence	1395007-1395037	10	0.677
NZ_CP004062_2	2.1\|2125819\|31\|NZ_CP004062\|CRISPRCasFinder	2125819-2125849	31	NZ_CP052087	Ralstonia solanacearum strain FJAT15353.F50 plasmid Plas1, complete sequence	1461408-1461438	10	0.677
NZ_CP004062_2	2.1\|2125819\|31\|NZ_CP004062\|CRISPRCasFinder	2125819-2125849	31	NZ_CP052097	Ralstonia solanacearum strain FJAT15304.F6 plasmid Plas1, complete sequence	1494251-1494281	10	0.677
NZ_CP004062_2	2.1\|2125819\|31\|NZ_CP004062\|CRISPRCasFinder	2125819-2125849	31	NZ_CP052127	Ralstonia solanacearum strain FJAT1303.F50 plasmid Plas1, complete sequence	1461408-1461438	10	0.677
NZ_CP004062_2	2.1\|2125819\|31\|NZ_CP004062\|CRISPRCasFinder	2125819-2125849	31	NZ_CP022764	Ralstonia solanacearum strain T82 plasmid unnamed, complete sequence	1420048-1420078	10	0.677
NZ_CP004062_2	2.1\|2125819\|31\|NZ_CP004062\|CRISPRCasFinder	2125819-2125849	31	NZ_CP052079	Ralstonia solanacearum strain FJAT445.F1 plasmid Plas1, complete sequence	1395029-1395059	10	0.677
NZ_CP004062_2	2.1\|2125819\|31\|NZ_CP004062\|CRISPRCasFinder	2125819-2125849	31	NZ_CP052089	Ralstonia solanacearum strain FJAT15353.F1 plasmid Plas1, complete sequence	1460611-1460641	10	0.677
NZ_CP004062_2	2.1\|2125819\|31\|NZ_CP004062\|CRISPRCasFinder	2125819-2125849	31	NZ_CP052093	Ralstonia solanacearum strain FJAT15340.F50 plasmid Plas1, complete sequence	1494251-1494281	10	0.677
NZ_CP004062_2	2.1\|2125819\|31\|NZ_CP004062\|CRISPRCasFinder	2125819-2125849	31	NZ_CP052101	Ralstonia solanacearum strain FJAT15304.F1 plasmid Plas1, complete sequence	1494251-1494281	10	0.677
NZ_CP004062_2	2.1\|2125819\|31\|NZ_CP004062\|CRISPRCasFinder	2125819-2125849	31	NZ_CP052099	Ralstonia solanacearum strain FJAT15304.F50 plasmid Plas1, complete sequence	1494251-1494281	10	0.677
NZ_CP004062_2	2.1\|2125819\|31\|NZ_CP004062\|CRISPRCasFinder	2125819-2125849	31	NZ_CP052125	Ralstonia solanacearum strain FJAT1452.F1 plasmid Plas1, complete sequence	1395029-1395059	10	0.677
NZ_CP004062_2	2.1\|2125819\|31\|NZ_CP004062\|CRISPRCasFinder	2125819-2125849	31	NZ_CP022793	Ralstonia solanacearum strain SL2729 plasmid unnamed, complete sequence	1401980-1402010	10	0.677
NZ_CP004062_2	2.1\|2125819\|31\|NZ_CP004062\|CRISPRCasFinder	2125819-2125849	31	NZ_CP022797	Ralstonia solanacearum strain SL2312 plasmid unnamed, complete sequence	1420030-1420060	10	0.677
NZ_CP004062_2	2.1\|2125819\|31\|NZ_CP004062\|CRISPRCasFinder	2125819-2125849	31	NZ_CP022785	Ralstonia solanacearum strain SL3730 plasmid unnamed, complete sequence	1382633-1382663	10	0.677
NZ_CP004062_2	2.1\|2125819\|31\|NZ_CP004062\|CRISPRCasFinder	2125819-2125849	31	NZ_CP022787	Ralstonia solanacearum strain SL3300 plasmid unnamed, complete sequence	1435889-1435919	10	0.677
NZ_CP004062_2	2.1\|2125819\|31\|NZ_CP004062\|CRISPRCasFinder	2125819-2125849	31	NZ_CP022756	Ralstonia solanacearum strain T117 plasmid unnamed, complete sequence	1474767-1474797	10	0.677
NZ_CP004062_2	2.1\|2125819\|31\|NZ_CP004062\|CRISPRCasFinder	2125819-2125849	31	NZ_CP052129	Ralstonia solanacearum strain FJAT1303.F1 plasmid Plas1, complete sequence	1491566-1491596	10	0.677
NZ_CP004062_2	2.1\|2125819\|31\|NZ_CP004062\|CRISPRCasFinder	2125819-2125849	31	NZ_CP052123	Ralstonia solanacearum strain FJAT1452.F50 plasmid Plas1, complete sequence	1395029-1395059	10	0.677
NZ_CP004062_2	2.1\|2125819\|31\|NZ_CP004062\|CRISPRCasFinder	2125819-2125849	31	NZ_CP052131	Ralstonia solanacearum strain FJAT1303.F8 plasmid Plas1, complete sequence	1461407-1461437	10	0.677
NZ_CP004062_2	2.1\|2125819\|31\|NZ_CP004062\|CRISPRCasFinder	2125819-2125849	31	NZ_CP052081	Ralstonia solanacearum strain FJAT442.F50 plasmid Plas1, complete sequence	1395029-1395059	10	0.677
NZ_CP004062_2	2.1\|2125819\|31\|NZ_CP004062\|CRISPRCasFinder	2125819-2125849	31	NZ_CP052083	Ralstonia solanacearum strain FJAT442.F1 plasmid Plas1, complete sequence	1395029-1395059	10	0.677
NZ_CP004062_2	2.1\|2125819\|31\|NZ_CP004062\|CRISPRCasFinder	2125819-2125849	31	NZ_CP052091	Ralstonia solanacearum strain FJAT15340.F6 plasmid Plas1, complete sequence	1494254-1494284	10	0.677
NZ_CP004062_2	2.1\|2125819\|31\|NZ_CP004062\|CRISPRCasFinder	2125819-2125849	31	NZ_CP022758	Ralstonia solanacearum strain T101 plasmid unnamed, complete sequence	1420015-1420045	10	0.677

1. spacer 2.1|2125819|31|NZ_CP004062|CRISPRCasFinder matches to NZ_CP045356 (Vibrio sp. THAF64 plasmid pTHAF64_a, complete sequence) position: , mismatch: 7, identity: 0.774

aaccactgctggctcttctgcagctactgct	CRISPR spacer
agcagcaactggcttttctgcagcaactgct	Protospacer
*.* .* .******.********* ******

2. spacer 2.1|2125819|31|NZ_CP004062|CRISPRCasFinder matches to NZ_CP046163 (Vibrio sp. THAF191c plasmid pTHAF191c_b, complete sequence) position: , mismatch: 7, identity: 0.774

aaccactgctggctcttctgcagctactgct	CRISPR spacer
agcagcaactggcttttctgcagcaactgct	Protospacer
*.* .* .******.********* ******

3. spacer 2.1|2125819|31|NZ_CP004062|CRISPRCasFinder matches to NZ_CP046066 (Vibrio sp. THAF191d plasmid pTHAF191d_b, complete sequence) position: , mismatch: 7, identity: 0.774

aaccactgctggctcttctgcagctactgct	CRISPR spacer
agcagcaactggcttttctgcagcaactgct	Protospacer
*.* .* .******.********* ******

4. spacer 2.1|2125819|31|NZ_CP004062|CRISPRCasFinder matches to NZ_CP012944 (Ralstonia solanacearum strain IBSBF1503 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.742

aaccactgctggctcttctgcagctactgct--	CRISPR spacer
ttccactgcgggctctgctgcagct--tggcga	Protospacer
  ******* ****** ********  ** .

5. spacer 2.1|2125819|31|NZ_CP004062|CRISPRCasFinder matches to NC_017575 (Ralstonia solanacearum Po82 megaplasmid, complete sequence) position: , mismatch: 8, identity: 0.742

aaccactgctggctcttctgcagctactgct--	CRISPR spacer
ttccactgcgggctctgctgcagct--tggcga	Protospacer
  ******* ****** ********  ** .

6. spacer 2.1|2125819|31|NZ_CP004062|CRISPRCasFinder matches to NZ_CP026308 (Ralstonia solanacearum strain IBSBF 2571 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.742

aaccactgctggctcttctgcagctactgct--	CRISPR spacer
ttccactgcgggctctgctgcagct--tggcga	Protospacer
  ******* ****** ********  ** .

7. spacer 2.1|2125819|31|NZ_CP004062|CRISPRCasFinder matches to NZ_CP021653 (Ralstonia solanacearum strain RS 488 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.742

aaccactgctggctcttctgcagctactgct--	CRISPR spacer
ttccactgcgggctctgctgcagct--tggcga	Protospacer
  ******* ****** ********  ** .

8. spacer 2.1|2125819|31|NZ_CP004062|CRISPRCasFinder matches to NZ_CP012940 (Ralstonia solanacearum strain UW163 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.742

aaccactgctggctcttctgcagctactgct--	CRISPR spacer
ttccactgcgggctctgctgcagct--tggcga	Protospacer
  ******* ****** ********  ** .

9. spacer 2.1|2125819|31|NZ_CP004062|CRISPRCasFinder matches to NZ_CP012688 (Ralstonia solanacearum strain UY031 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.742

aaccactgctggctcttctgcagctactgct--	CRISPR spacer
ttccactgcgggctctgctgcagct--tggcga	Protospacer
  ******* ****** ********  ** .

10. spacer 2.1|2125819|31|NZ_CP004062|CRISPRCasFinder matches to CP047139 (Ralstonia solanacearum strain CFBP 8695 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.742

aaccactgctggctcttctgcagctactgct--	CRISPR spacer
ttccactgcgggctctgctgcagct--tggcga	Protospacer
  ******* ****** ********  ** .

11. spacer 2.1|2125819|31|NZ_CP004062|CRISPRCasFinder matches to NZ_CP051295 (Ralstonia solanacearum strain CIAT_078 plasmid megaplasmid, complete sequence) position: , mismatch: 8, identity: 0.742

aaccactgctggctcttctgcagctactgct--	CRISPR spacer
ttccactgcgggctctgctgcagct--tggcga	Protospacer
  ******* ****** ********  ** .

12. spacer 2.1|2125819|31|NZ_CP004062|CRISPRCasFinder matches to CP047137 (Ralstonia solanacearum strain CFBP 8697 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.742

aaccactgctggctcttctgcagctactgct--	CRISPR spacer
ttccactgcgggctctgctgcagct--tggcga	Protospacer
  ******* ****** ********  ** .

13. spacer 2.1|2125819|31|NZ_CP004062|CRISPRCasFinder matches to NZ_CP016613 (Ralstonia solanacearum FJAT-91 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.677

aaccactgctggctcttctgcagctactgct	CRISPR spacer
ttccactgcgggctctgctgcagctgggcga	Protospacer
  ******* ****** ********.

14. spacer 2.1|2125819|31|NZ_CP004062|CRISPRCasFinder matches to NZ_CP021449 (Ralstonia solanacearum strain SEPPX05 plasmid pSEPPX05, complete sequence) position: , mismatch: 10, identity: 0.677

aaccactgctggctcttctgcagctactgct	CRISPR spacer
ttccactgcgggctctgctgcagctgggcga	Protospacer
  ******* ****** ********.

15. spacer 2.1|2125819|31|NZ_CP004062|CRISPRCasFinder matches to NZ_CP049790 (Ralstonia solanacearum strain 202 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.677

aaccactgctggctcttctgcagctactgct	CRISPR spacer
ttccactgcgggctctgctgcagctgggcga	Protospacer
  ******* ****** ********.

16. spacer 2.1|2125819|31|NZ_CP004062|CRISPRCasFinder matches to NZ_CP049788 (Ralstonia solanacearum strain B2 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.677

aaccactgctggctcttctgcagctactgct	CRISPR spacer
ttccactgcgggctctgctgcagctgggcga	Protospacer
  ******* ****** ********.

17. spacer 2.1|2125819|31|NZ_CP004062|CRISPRCasFinder matches to NZ_CP016915 (Ralstonia solanacearum strain CQPS-1 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.677

aaccactgctggctcttctgcagctactgct	CRISPR spacer
ttccactgcgggctctgctgcagctgggcga	Protospacer
  ******* ****** ********.

18. spacer 2.1|2125819|31|NZ_CP004062|CRISPRCasFinder matches to NZ_CP015851 (Ralstonia solanacearum strain YC40-M plasmid, complete sequence) position: , mismatch: 10, identity: 0.677

aaccactgctggctcttctgcagctactgct	CRISPR spacer
ttccactgcgggctctgctgcagctgggcga	Protospacer
  ******* ****** ********.

19. spacer 2.1|2125819|31|NZ_CP004062|CRISPRCasFinder matches to NZ_CP022482 (Ralstonia solanacearum strain HA4-1 plasmid HA4-1MP, complete sequence) position: , mismatch: 10, identity: 0.677

aaccactgctggctcttctgcagctactgct	CRISPR spacer
ttccactgcgggctctgctgcagctgggcga	Protospacer
  ******* ****** ********.

20. spacer 2.1|2125819|31|NZ_CP004062|CRISPRCasFinder matches to NZ_CP022781 (Ralstonia solanacearum strain SL3822 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.677

aaccactgctggctcttctgcagctactgct	CRISPR spacer
ttccactgcgggctctgctgcagctgggcga	Protospacer
  ******* ****** ********.

21. spacer 2.1|2125819|31|NZ_CP004062|CRISPRCasFinder matches to CP011998 (Ralstonia solanacearum strain YC45 plasmid, complete sequence) position: , mismatch: 10, identity: 0.677

aaccactgctggctcttctgcagctactgct	CRISPR spacer
ttccactgcgggctctgctgcagctgggcga	Protospacer
  ******* ****** ********.

22. spacer 2.1|2125819|31|NZ_CP004062|CRISPRCasFinder matches to NZ_CP052111 (Ralstonia solanacearum strain FJAT15244.F50 plasmid Plas1, complete sequence) position: , mismatch: 10, identity: 0.677

aaccactgctggctcttctgcagctactgct	CRISPR spacer
ttccactgcgggctctgctgcagctgggcga	Protospacer
  ******* ****** ********.

23. spacer 2.1|2125819|31|NZ_CP004062|CRISPRCasFinder matches to NZ_CP052113 (Ralstonia solanacearum strain FJAT15244.F1 plasmid Plas1, complete sequence) position: , mismatch: 10, identity: 0.677

aaccactgctggctcttctgcagctactgct	CRISPR spacer
ttccactgcgggctctgctgcagctgggcga	Protospacer
  ******* ****** ********.

24. spacer 2.1|2125819|31|NZ_CP004062|CRISPRCasFinder matches to NZ_CP022775 (Ralstonia solanacearum strain T12 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.677

aaccactgctggctcttctgcagctactgct	CRISPR spacer
ttccactgcgggctctgctgcagctgggcga	Protospacer
  ******* ****** ********.

25. spacer 2.1|2125819|31|NZ_CP004062|CRISPRCasFinder matches to NC_014310 (Ralstonia solanacearum PSI07 plasmid mpPSI07, complete sequence) position: , mismatch: 10, identity: 0.677

aaccactgctggctcttctgcagctactgct	CRISPR spacer
ttccactgcgggctctgctgcagctgggcga	Protospacer
  ******* ****** ********.

26. spacer 2.1|2125819|31|NZ_CP004062|CRISPRCasFinder matches to NZ_CP022762 (Ralstonia solanacearum strain T95 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.677

aaccactgctggctcttctgcagctactgct	CRISPR spacer
ttccactgcgggctctgctgcagctgggcga	Protospacer
  ******* ****** ********.

27. spacer 2.1|2125819|31|NZ_CP004062|CRISPRCasFinder matches to NZ_CP049794 (Ralstonia solanacearum strain 204 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.677

aaccactgctggctcttctgcagctactgct	CRISPR spacer
ttccactgcgggctctgctgcagctgggcga	Protospacer
  ******* ****** ********.

28. spacer 2.1|2125819|31|NZ_CP004062|CRISPRCasFinder matches to NZ_CP022766 (Ralstonia solanacearum strain T78 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.677

aaccactgctggctcttctgcagctactgct	CRISPR spacer
ttccactgcgggctctgctgcagctgggcga	Protospacer
  ******* ****** ********.

29. spacer 2.1|2125819|31|NZ_CP004062|CRISPRCasFinder matches to NC_007974 (Cupriavidus metallidurans CH34 megaplasmid, complete sequence) position: , mismatch: 10, identity: 0.677

aaccactgctggctcttctgcagctactgct	CRISPR spacer
ttccactgcgggctcttctgaagctgggcga	Protospacer
  ******* ********** ****.

30. spacer 2.1|2125819|31|NZ_CP004062|CRISPRCasFinder matches to NZ_CP021763 (Ralstonia pseudosolanacearum strain RS 476 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.677

aaccactgctggctcttctgcagctactgct	CRISPR spacer
ttccactgcgggctctgctgcagctgggcga	Protospacer
  ******* ****** ********.

31. spacer 2.1|2125819|31|NZ_CP004062|CRISPRCasFinder matches to NZ_CP046333 (Cupriavidus metallidurans strain FDAARGOS_675 plasmid unnamed3) position: , mismatch: 10, identity: 0.677

aaccactgctggctcttctgcagctactgct	CRISPR spacer
ttccactgcgggctcttctgaagctgggcga	Protospacer
  ******* ********** ****.

32. spacer 2.1|2125819|31|NZ_CP004062|CRISPRCasFinder matches to NZ_CP015116 (Ralstonia solanacearum strain EP1 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.677

aaccactgctggctcttctgcagctactgct	CRISPR spacer
ttccactgcgggctctgctgcagctgggcga	Protospacer
  ******* ****** ********.

33. spacer 2.1|2125819|31|NZ_CP004062|CRISPRCasFinder matches to NZ_CP049792 (Ralstonia solanacearum strain 203 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.677

aaccactgctggctcttctgcagctactgct	CRISPR spacer
ttccactgcgggctctgctgcagctgggcga	Protospacer
  ******* ****** ********.

34. spacer 2.1|2125819|31|NZ_CP004062|CRISPRCasFinder matches to NZ_CP052069 (Ralstonia solanacearum strain FJAT91.F50 plasmid Plas1, complete sequence) position: , mismatch: 10, identity: 0.677

aaccactgctggctcttctgcagctactgct	CRISPR spacer
ttccactgcgggctctgctgcagctgggcga	Protospacer
  ******* ****** ********.

35. spacer 2.1|2125819|31|NZ_CP004062|CRISPRCasFinder matches to NZ_CP016905 (Ralstonia solanacearum strain KACC 10709 plasmid unnamed1) position: , mismatch: 10, identity: 0.677

aaccactgctggctcttctgcagctactgct	CRISPR spacer
ttccactgcgggctctgctgcagctgggcga	Protospacer
  ******* ****** ********.

36. spacer 2.1|2125819|31|NZ_CP004062|CRISPRCasFinder matches to NZ_CP025986 (Ralstonia solanacearum strain RSCM plasmid p-unname2, complete sequence) position: , mismatch: 10, identity: 0.677

aaccactgctggctcttctgcagctactgct	CRISPR spacer
ttccactgcgggctctgctgcagctgggcga	Protospacer
  ******* ****** ********.

37. spacer 2.1|2125819|31|NZ_CP004062|CRISPRCasFinder matches to NZ_CP022769 (Ralstonia solanacearum strain T60 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.677

aaccactgctggctcttctgcagctactgct	CRISPR spacer
ttccactgcgggctctgctgcagctgggcga	Protospacer
  ******* ****** ********.

38. spacer 2.1|2125819|31|NZ_CP004062|CRISPRCasFinder matches to NZ_CP023017 (Ralstonia solanacearum strain SL3022 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.677

aaccactgctggctcttctgcagctactgct	CRISPR spacer
ttccactgcgggctctgctgcagctgggcga	Protospacer
  ******* ****** ********.

39. spacer 2.1|2125819|31|NZ_CP004062|CRISPRCasFinder matches to NZ_CP022773 (Ralstonia solanacearum strain T42 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.677

aaccactgctggctcttctgcagctactgct	CRISPR spacer
ttccactgcgggctctgctgcagctgggcga	Protospacer
  ******* ****** ********.

40. spacer 2.1|2125819|31|NZ_CP004062|CRISPRCasFinder matches to NZ_CP022791 (Ralstonia solanacearum strain SL3103 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.677

aaccactgctggctcttctgcagctactgct	CRISPR spacer
ttccactgcgggctctgctgcagctgggcga	Protospacer
  ******* ****** ********.

41. spacer 2.1|2125819|31|NZ_CP004062|CRISPRCasFinder matches to NZ_CP014703 (Ralstonia solanacearum strain KACC 10722 plasmid, complete sequence) position: , mismatch: 10, identity: 0.677

aaccactgctggctcttctgcagctactgct	CRISPR spacer
ttccactgcgggctctgctgcagctgggcga	Protospacer
  ******* ****** ********.

42. spacer 2.1|2125819|31|NZ_CP004062|CRISPRCasFinder matches to NZ_CP022760 (Ralstonia solanacearum strain T98 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.677

aaccactgctggctcttctgcagctactgct	CRISPR spacer
ttccactgcgggctctgctgcagctgggcga	Protospacer
  ******* ****** ********.

43. spacer 2.1|2125819|31|NZ_CP004062|CRISPRCasFinder matches to NZ_CP022789 (Ralstonia solanacearum strain SL3175 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.677

aaccactgctggctcttctgcagctactgct	CRISPR spacer
ttccactgcgggctctgctgcagctgggcga	Protospacer
  ******* ****** ********.

44. spacer 2.1|2125819|31|NZ_CP004062|CRISPRCasFinder matches to NZ_CP022771 (Ralstonia solanacearum strain T51 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.677

aaccactgctggctcttctgcagctactgct	CRISPR spacer
ttccactgcgggctctgctgcagctgggcga	Protospacer
  ******* ****** ********.

45. spacer 2.1|2125819|31|NZ_CP004062|CRISPRCasFinder matches to NZ_CP022777 (Ralstonia solanacearum strain T11 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.677

aaccactgctggctcttctgcagctactgct	CRISPR spacer
ttccactgcgggctctgctgcagctgggcga	Protospacer
  ******* ****** ********.

46. spacer 2.1|2125819|31|NZ_CP004062|CRISPRCasFinder matches to NZ_CP022799 (Ralstonia solanacearum strain SL2064 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.677

aaccactgctggctcttctgcagctactgct	CRISPR spacer
ttccactgcgggctctgctgcagctgggcga	Protospacer
  ******* ****** ********.

47. spacer 2.1|2125819|31|NZ_CP004062|CRISPRCasFinder matches to NZ_CP009763 (Ralstonia solanacearum OE1-1 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.677

aaccactgctggctcttctgcagctactgct	CRISPR spacer
ttccactgcgggctctgctgcagctgggcga	Protospacer
  ******* ****** ********.

48. spacer 2.1|2125819|31|NZ_CP004062|CRISPRCasFinder matches to NZ_CP022779 (Ralstonia solanacearum strain SL3882 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.677

aaccactgctggctcttctgcagctactgct	CRISPR spacer
ttccactgcgggctctgctgcagctgggcga	Protospacer
  ******* ****** ********.

49. spacer 2.1|2125819|31|NZ_CP004062|CRISPRCasFinder matches to NZ_CP052085 (Ralstonia solanacearum strain FJAT15353.F8 plasmid Plas1, complete sequence) position: , mismatch: 10, identity: 0.677

aaccactgctggctcttctgcagctactgct	CRISPR spacer
ttccactgcgggctctgctgcagctgggcga	Protospacer
  ******* ****** ********.

50. spacer 2.1|2125819|31|NZ_CP004062|CRISPRCasFinder matches to NZ_CP052095 (Ralstonia solanacearum strain FJAT15340.F1 plasmid Plas1, complete sequence) position: , mismatch: 10, identity: 0.677

aaccactgctggctcttctgcagctactgct	CRISPR spacer
ttccactgcgggctctgctgcagctgggcga	Protospacer
  ******* ****** ********.

51. spacer 2.1|2125819|31|NZ_CP004062|CRISPRCasFinder matches to NZ_CP052077 (Ralstonia solanacearum strain FJAT445.F50 plasmid Plas1, complete sequence) position: , mismatch: 10, identity: 0.677

aaccactgctggctcttctgcagctactgct	CRISPR spacer
ttccactgcgggctctgctgcagctgggcga	Protospacer
  ******* ****** ********.

52. spacer 2.1|2125819|31|NZ_CP004062|CRISPRCasFinder matches to NZ_CP052087 (Ralstonia solanacearum strain FJAT15353.F50 plasmid Plas1, complete sequence) position: , mismatch: 10, identity: 0.677

aaccactgctggctcttctgcagctactgct	CRISPR spacer
ttccactgcgggctctgctgcagctgggcga	Protospacer
  ******* ****** ********.

53. spacer 2.1|2125819|31|NZ_CP004062|CRISPRCasFinder matches to NZ_CP052097 (Ralstonia solanacearum strain FJAT15304.F6 plasmid Plas1, complete sequence) position: , mismatch: 10, identity: 0.677

aaccactgctggctcttctgcagctactgct	CRISPR spacer
ttccactgcgggctctgctgcagctgggcga	Protospacer
  ******* ****** ********.

54. spacer 2.1|2125819|31|NZ_CP004062|CRISPRCasFinder matches to NZ_CP052127 (Ralstonia solanacearum strain FJAT1303.F50 plasmid Plas1, complete sequence) position: , mismatch: 10, identity: 0.677

aaccactgctggctcttctgcagctactgct	CRISPR spacer
ttccactgcgggctctgctgcagctgggcga	Protospacer
  ******* ****** ********.

55. spacer 2.1|2125819|31|NZ_CP004062|CRISPRCasFinder matches to NZ_CP022764 (Ralstonia solanacearum strain T82 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.677

aaccactgctggctcttctgcagctactgct	CRISPR spacer
ttccactgcgggctctgctgcagctgggcga	Protospacer
  ******* ****** ********.

56. spacer 2.1|2125819|31|NZ_CP004062|CRISPRCasFinder matches to NZ_CP052079 (Ralstonia solanacearum strain FJAT445.F1 plasmid Plas1, complete sequence) position: , mismatch: 10, identity: 0.677

aaccactgctggctcttctgcagctactgct	CRISPR spacer
ttccactgcgggctctgctgcagctgggcga	Protospacer
  ******* ****** ********.

57. spacer 2.1|2125819|31|NZ_CP004062|CRISPRCasFinder matches to NZ_CP052089 (Ralstonia solanacearum strain FJAT15353.F1 plasmid Plas1, complete sequence) position: , mismatch: 10, identity: 0.677

aaccactgctggctcttctgcagctactgct	CRISPR spacer
ttccactgcgggctctgctgcagctgggcga	Protospacer
  ******* ****** ********.

58. spacer 2.1|2125819|31|NZ_CP004062|CRISPRCasFinder matches to NZ_CP052093 (Ralstonia solanacearum strain FJAT15340.F50 plasmid Plas1, complete sequence) position: , mismatch: 10, identity: 0.677

aaccactgctggctcttctgcagctactgct	CRISPR spacer
ttccactgcgggctctgctgcagctgggcga	Protospacer
  ******* ****** ********.

59. spacer 2.1|2125819|31|NZ_CP004062|CRISPRCasFinder matches to NZ_CP052101 (Ralstonia solanacearum strain FJAT15304.F1 plasmid Plas1, complete sequence) position: , mismatch: 10, identity: 0.677

aaccactgctggctcttctgcagctactgct	CRISPR spacer
ttccactgcgggctctgctgcagctgggcga	Protospacer
  ******* ****** ********.

60. spacer 2.1|2125819|31|NZ_CP004062|CRISPRCasFinder matches to NZ_CP052099 (Ralstonia solanacearum strain FJAT15304.F50 plasmid Plas1, complete sequence) position: , mismatch: 10, identity: 0.677

aaccactgctggctcttctgcagctactgct	CRISPR spacer
ttccactgcgggctctgctgcagctgggcga	Protospacer
  ******* ****** ********.

61. spacer 2.1|2125819|31|NZ_CP004062|CRISPRCasFinder matches to NZ_CP052125 (Ralstonia solanacearum strain FJAT1452.F1 plasmid Plas1, complete sequence) position: , mismatch: 10, identity: 0.677

aaccactgctggctcttctgcagctactgct	CRISPR spacer
ttccactgcgggctctgctgcagctgggcga	Protospacer
  ******* ****** ********.

62. spacer 2.1|2125819|31|NZ_CP004062|CRISPRCasFinder matches to NZ_CP022793 (Ralstonia solanacearum strain SL2729 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.677

aaccactgctggctcttctgcagctactgct	CRISPR spacer
ttccactgcgggctctgctgcagctgggcga	Protospacer
  ******* ****** ********.

63. spacer 2.1|2125819|31|NZ_CP004062|CRISPRCasFinder matches to NZ_CP022797 (Ralstonia solanacearum strain SL2312 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.677

aaccactgctggctcttctgcagctactgct	CRISPR spacer
ttccactgcgggctctgctgcagctgggcga	Protospacer
  ******* ****** ********.

64. spacer 2.1|2125819|31|NZ_CP004062|CRISPRCasFinder matches to NZ_CP022785 (Ralstonia solanacearum strain SL3730 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.677

aaccactgctggctcttctgcagctactgct	CRISPR spacer
ttccactgcgggctctgctgcagctgggcga	Protospacer
  ******* ****** ********.

65. spacer 2.1|2125819|31|NZ_CP004062|CRISPRCasFinder matches to NZ_CP022787 (Ralstonia solanacearum strain SL3300 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.677

aaccactgctggctcttctgcagctactgct	CRISPR spacer
ttccactgcgggctctgctgcagctgggcga	Protospacer
  ******* ****** ********.

66. spacer 2.1|2125819|31|NZ_CP004062|CRISPRCasFinder matches to NZ_CP022756 (Ralstonia solanacearum strain T117 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.677

aaccactgctggctcttctgcagctactgct	CRISPR spacer
ttccactgcgggctctgctgcagctgggcga	Protospacer
  ******* ****** ********.

67. spacer 2.1|2125819|31|NZ_CP004062|CRISPRCasFinder matches to NZ_CP052129 (Ralstonia solanacearum strain FJAT1303.F1 plasmid Plas1, complete sequence) position: , mismatch: 10, identity: 0.677

aaccactgctggctcttctgcagctactgct	CRISPR spacer
ttccactgcgggctctgctgcagctgggcga	Protospacer
  ******* ****** ********.

68. spacer 2.1|2125819|31|NZ_CP004062|CRISPRCasFinder matches to NZ_CP052123 (Ralstonia solanacearum strain FJAT1452.F50 plasmid Plas1, complete sequence) position: , mismatch: 10, identity: 0.677

aaccactgctggctcttctgcagctactgct	CRISPR spacer
ttccactgcgggctctgctgcagctgggcga	Protospacer
  ******* ****** ********.

69. spacer 2.1|2125819|31|NZ_CP004062|CRISPRCasFinder matches to NZ_CP052131 (Ralstonia solanacearum strain FJAT1303.F8 plasmid Plas1, complete sequence) position: , mismatch: 10, identity: 0.677

aaccactgctggctcttctgcagctactgct	CRISPR spacer
ttccactgcgggctctgctgcagctgggcga	Protospacer
  ******* ****** ********.

70. spacer 2.1|2125819|31|NZ_CP004062|CRISPRCasFinder matches to NZ_CP052081 (Ralstonia solanacearum strain FJAT442.F50 plasmid Plas1, complete sequence) position: , mismatch: 10, identity: 0.677

aaccactgctggctcttctgcagctactgct	CRISPR spacer
ttccactgcgggctctgctgcagctgggcga	Protospacer
  ******* ****** ********.

71. spacer 2.1|2125819|31|NZ_CP004062|CRISPRCasFinder matches to NZ_CP052083 (Ralstonia solanacearum strain FJAT442.F1 plasmid Plas1, complete sequence) position: , mismatch: 10, identity: 0.677

aaccactgctggctcttctgcagctactgct	CRISPR spacer
ttccactgcgggctctgctgcagctgggcga	Protospacer
  ******* ****** ********.

72. spacer 2.1|2125819|31|NZ_CP004062|CRISPRCasFinder matches to NZ_CP052091 (Ralstonia solanacearum strain FJAT15340.F6 plasmid Plas1, complete sequence) position: , mismatch: 10, identity: 0.677

aaccactgctggctcttctgcagctactgct	CRISPR spacer
ttccactgcgggctctgctgcagctgggcga	Protospacer
  ******* ****** ********.

73. spacer 2.1|2125819|31|NZ_CP004062|CRISPRCasFinder matches to NZ_CP022758 (Ralstonia solanacearum strain T101 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.677

aaccactgctggctcttctgcagctactgct	CRISPR spacer
ttccactgcgggctctgctgcagctgggcga	Protospacer
  ******* ****** ********.

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

452065 : 491136

Catovirus(18.18%)

transposase

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_065366598.1\|452065_453331_-\|transposase	IS256 family transposase	A0A220NQR7	Corynebacterium_phage	7.8e-234	97.6
WP_065366599.1\|454634_457286_+	hypothetical protein	NA	NA	NA	NA
WP_146144398.1\|457325_458192_+	hypothetical protein	NA	NA	NA	NA
WP_065366601.1\|458229_459606_+	glycosyltransferase family 25 protein	NA	NA	NA	NA
WP_065366602.1\|459824_460709_+	ABC transporter permease	NA	NA	NA	NA
WP_077311031.1\|460836_461559_+	ABC transporter ATP-binding protein	NA	NA	NA	NA
WP_060563812.1\|463502_463925_-	hypothetical protein	NA	NA	NA	NA
WP_107111901.1\|464312_468842_-	glycosyltransferase	A0A1V0SAE6	Catovirus	2.3e-33	31.6
WP_065366603.1\|469172_470426_-	UDP-N-acetyl-D-mannosamine dehydrogenase	M1HFY9	Paramecium_bursaria_Chlorella_virus	4.0e-20	25.0
WP_081299818.1\|473745_475935_-	hypothetical protein	NA	NA	NA	NA
WP_060563823.1\|475977_476886_-\|transposase	IS982 family transposase	NA	NA	NA	NA
WP_065366605.1\|477164_478352_+	hypothetical protein	NA	NA	NA	NA
WP_065366606.1\|478386_478602_+	hypothetical protein	NA	NA	NA	NA
WP_065366607.1\|478620_481614_+	glycosyltransferase	A0A1V0SAE6	Catovirus	3.4e-25	30.0
WP_081299819.1\|481872_482157_-\|transposase	transposase	NA	NA	NA	NA
WP_034983522.1\|482180_483491_-\|transposase	ISL3-like element IS31831 family transposase	A0A2H4PDF8	Mycobacterium_phage	1.0e-82	42.2
WP_060563542.1\|483665_484976_-\|transposase	ISL3-like element IS13869 family transposase	A0A2H4PDF8	Mycobacterium_phage	2.5e-86	44.2
WP_089158485.1\|485485_485824_+\|transposase	transposase	NA	NA	NA	NA
WP_107111903.1\|485637_486420_+\|transposase	IS3 family transposase	Q6J1X2	Lactobacillus_phage	5.9e-14	28.6
WP_107111904.1\|486397_487599_-\|transposase	IS3 family transposase	Q6J1X2	Lactobacillus_phage	2.7e-26	30.1
WP_075348078.1\|487657_487837_-\|transposase	transposase	A0A1B3AZF8	Gordonia_phage	2.4e-08	49.1
WP_065366609.1\|487976_488456_+	hypothetical protein	NA	NA	NA	NA
WP_075348475.1\|488656_490066_+	dihydrolipoyl dehydrogenase	A0A2K5B2C5	Erysipelothrix_phage	1.1e-45	29.2
WP_075348476.1\|490257_491136_+	UTP--glucose-1-phosphate uridylyltransferase	A0A127AW70	Bacillus_phage	9.4e-45	39.9

DBSCAN-SWA_2

1472992 : 1529750

Mycobacterium_phage(37.5%)

transposase,tRNA,integrase

attL 1492493:1492508|attR 1519050:1519065

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_034983522.1\|1472992_1474303_-\|transposase	ISL3-like element IS31831 family transposase	A0A2H4PDF8	Mycobacterium_phage	1.0e-82	42.2
WP_003861455.1\|1475151_1476174_+	3-isopropylmalate dehydrogenase	NA	NA	NA	NA
WP_081299840.1\|1476198_1477230_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_060564434.1\|1479218_1479875_+	DNA polymerase III subunit epsilon	NA	NA	NA	NA
WP_003861462.1\|1479935_1480742_+	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA
WP_060564436.1\|1480743_1481349_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_060564437.1\|1481842_1482973_-	isochorismate synthase MenF	NA	NA	NA	NA
WP_081299894.1\|1483047_1484529_+\|tRNA	glutamate--tRNA ligase	NA	NA	NA	NA
WP_003854060.1\|1484600_1484816_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_060564438.1\|1484816_1485290_-	DUF2975 domain-containing protein	NA	NA	NA	NA
WP_060564439.1\|1485406_1485931_-	hypothetical protein	NA	NA	NA	NA
WP_107111913.1\|1486552_1487023_-	SRPBCC domain-containing protein	NA	NA	NA	NA
WP_034983522.1\|1488510_1489821_-\|transposase	ISL3-like element IS31831 family transposase	A0A2H4PDF8	Mycobacterium_phage	1.0e-82	42.2
WP_146144406.1\|1490482_1491703_+	hypothetical protein	NA	NA	NA	NA
WP_060564443.1\|1492477_1493101_+	SAM-dependent DNA methyltransferase	A0A2H4PQP4	Staphylococcus_phage	9.1e-18	30.1
1492493:1492508	attL	NA	NA	NA	NA
WP_065366843.1\|1493156_1495190_+	site-specific DNA-methyltransferase	H6W8D6	Escherichia_phage	1.8e-67	38.1
WP_081299841.1\|1495186_1497832_+	restriction endonuclease subunit R	NA	NA	NA	NA
WP_146144407.1\|1497934_1498333_-	hypothetical protein	NA	NA	NA	NA
WP_065367237.1\|1498337_1499795_-	hypothetical protein	NA	NA	NA	NA
WP_060564448.1\|1500410_1502213_-	hypothetical protein	NA	NA	NA	NA
WP_081299842.1\|1502209_1503628_-\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_060564449.1\|1505565_1506801_+	restriction endonuclease subunit S	NA	NA	NA	NA
WP_065366844.1\|1506797_1509884_+	HsdR family type I site-specific deoxyribonuclease	A0A220A398	Liberibacter_phage	1.8e-58	29.3
WP_081299843.1\|1509867_1510614_+	M48 family metallopeptidase	NA	NA	NA	NA
WP_060564451.1\|1510655_1512287_+	AAA family ATPase	NA	NA	NA	NA
WP_065366845.1\|1512283_1513381_+	AAA family ATPase	NA	NA	NA	NA
WP_060564454.1\|1514275_1515241_-	hypothetical protein	NA	NA	NA	NA
WP_107111914.1\|1516391_1517231_+\|transposase	IS5 family transposase	A0A0N9SHJ4	Paenibacillus_phage	1.5e-07	34.5
WP_060564456.1\|1517311_1518235_+	hypothetical protein	NA	NA	NA	NA
WP_065366846.1\|1518368_1519781_+	hypothetical protein	NA	NA	NA	NA
1519050:1519065	attR	NA	NA	NA	NA
WP_060564458.1\|1519875_1521102_+	leucine-rich repeat protein	NA	NA	NA	NA
WP_107111897.1\|1521861_1523047_+\|transposase	IS3-like element IS1206 family transposase	U5P429	Shigella_phage	5.4e-27	33.7
WP_081299844.1\|1523066_1523318_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_060564459.1\|1523425_1524580_+	hypothetical protein	NA	NA	NA	NA
WP_011014272.1\|1524576_1524903_+	hypothetical protein	NA	NA	NA	NA
WP_065366847.1\|1524899_1526663_-	phosphomethylpyrimidine synthase ThiC	NA	NA	NA	NA
WP_107111918.1\|1527001_1527292_-	hypothetical protein	NA	NA	NA	NA
WP_065367239.1\|1527831_1528161_+	hypothetical protein	NA	NA	NA	NA
WP_034983522.1\|1528439_1529750_+\|transposase	ISL3-like element IS31831 family transposase	A0A2H4PDF8	Mycobacterium_phage	1.0e-82	42.2

DBSCAN-SWA_3

1556747 : 1602169

Shigella_phage(37.5%)

protease,transposase,integrase

attL 1556609:1556660|attR 1570236:1570287

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1556609:1556660	attL	NA	NA	NA	NA
WP_081299846.1\|1556747_1557506_-\|integrase	site-specific integrase	G9FH48	Rhodococcus_phage	1.8e-15	32.1
WP_011014294.1\|1557491_1557902_+	hypothetical protein	NA	NA	NA	NA
WP_003861519.1\|1557898_1558645_+	hypothetical protein	NA	NA	NA	NA
WP_003858809.1\|1558837_1559272_+	metallopeptidase	NA	NA	NA	NA
WP_089158527.1\|1559950_1561152_-\|transposase	IS3 family transposase	U5P429	Shigella_phage	2.5e-27	34.2
WP_065366854.1\|1561257_1561872_+	hypothetical protein	NA	NA	NA	NA
WP_003858801.1\|1561874_1562096_+	DUF2283 domain-containing protein	NA	NA	NA	NA
WP_038583885.1\|1562744_1563179_-	hypothetical protein	NA	NA	NA	NA
WP_003858799.1\|1563194_1563410_-	hypothetical protein	NA	NA	NA	NA
WP_003858795.1\|1563848_1564220_-	hypothetical protein	NA	NA	NA	NA
WP_011014297.1\|1564240_1564558_-	hypothetical protein	NA	NA	NA	NA
WP_003858792.1\|1564936_1565140_+	hypothetical protein	NA	NA	NA	NA
WP_003861526.1\|1566111_1566489_-	hypothetical protein	NA	NA	NA	NA
WP_003861528.1\|1566747_1567698_-\|protease	trypsin-like serine protease	NA	NA	NA	NA
WP_003858787.1\|1567802_1568111_-	hypothetical protein	NA	NA	NA	NA
WP_003858785.1\|1568120_1568687_-	hypothetical protein	NA	NA	NA	NA
WP_060564480.1\|1569037_1569262_+	hypothetical protein	NA	NA	NA	NA
WP_060564481.1\|1569309_1569603_-	hypothetical protein	NA	NA	NA	NA
WP_065366855.1\|1570504_1573147_+	DNA polymerase I	F8WQ35	Bacillus_phage	7.5e-45	35.7
1570236:1570287	attR	NA	NA	NA	NA
WP_060564483.1\|1573143_1574544_-	MFS transporter	NA	NA	NA	NA
WP_060564484.1\|1574580_1575558_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_060564485.1\|1575560_1576436_+	aldo/keto reductase	A0A2H4PQR8	Staphylococcus_phage	2.8e-57	43.9
WP_075348197.1\|1576810_1577590_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_065366856.1\|1577841_1579308_+	30S ribosomal protein S1	NA	NA	NA	NA
WP_065366857.1\|1579966_1581991_+	PTS beta-glucoside transporter subunit EIIBCA	NA	NA	NA	NA
WP_060564489.1\|1582038_1582641_+	dephospho-CoA kinase	NA	NA	NA	NA
WP_107111897.1\|1583490_1584677_-\|transposase	IS3-like element IS1206 family transposase	U5P429	Shigella_phage	5.4e-27	33.7
WP_003858758.1\|1584946_1585306_+	DUF4259 domain-containing protein	NA	NA	NA	NA
WP_040967371.1\|1585373_1585856_+	FABP family protein	NA	NA	NA	NA
WP_065366859.1\|1585852_1586791_-	nucleoside hydrolase	NA	NA	NA	NA
WP_065366860.1\|1586822_1588274_-	MFS transporter	NA	NA	NA	NA
WP_065366861.1\|1588287_1589211_-	ribokinase	NA	NA	NA	NA
WP_060564494.1\|1589203_1590244_-	substrate-binding domain-containing protein	NA	NA	NA	NA
WP_107111916.1\|1593302_1594495_-\|transposase	IS3 family transposase	Q6J1X2	Lactobacillus_phage	3.0e-25	28.3
WP_146144408.1\|1594538_1595306_+	hypothetical protein	NA	NA	NA	NA
WP_060564497.1\|1595326_1596001_+	ATP-binding cassette domain-containing protein	G9BWD6	Planktothrix_phage	4.4e-26	35.1
WP_146144409.1\|1595975_1597382_+	hypothetical protein	NA	NA	NA	NA
WP_081299847.1\|1597602_1599765_+	excinuclease ABC subunit UvrB	NA	NA	NA	NA
WP_060564499.1\|1599895_1600339_+	universal stress protein	NA	NA	NA	NA
WP_003861566.1\|1600425_1600809_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_107111897.1\|1600982_1602169_-\|transposase	IS3-like element IS1206 family transposase	U5P429	Shigella_phage	5.4e-27	33.7

DBSCAN-SWA_4

1803733 : 1809144

Corynephage(33.33%)

integrase

attL 1797939:1797952|attR 1808602:1808615

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1797939:1797952	attL	NA	NA	NA	NA
WP_081299849.1\|1803733_1804045_+	TM2 domain-containing protein	A0A1B0T6B3	Bacillus_phage	4.4e-05	42.7
WP_065366910.1\|1804083_1804674_+	hypothetical protein	A0A1P8D5Q9	Corynebacterium_phage	2.6e-22	53.3
WP_060564602.1\|1805406_1806165_+	hypothetical protein	NA	NA	NA	NA
WP_060564603.1\|1806269_1806602_+	hypothetical protein	Q9ZWV7	Corynephage	2.8e-18	45.0
WP_060564604.1\|1806632_1807175_+\|integrase	tyrosine-type recombinase/integrase	Q9ZWV7	Corynephage	2.7e-10	31.0
WP_060564605.1\|1807278_1807509_+\|integrase	tyrosine-type recombinase/integrase	A0A1L6BZH2	Pasteurella_phage	1.3e-06	43.1
WP_065366912.1\|1807512_1809144_-	ABC-F family ATP-binding cassette domain-containing protein	A0A1V0SKJ1	Klosneuvirus	6.0e-37	26.9
1808602:1808615	attR	NA	NA	NA	NA

DBSCAN-SWA_5

2604018 : 2648264

Mycobacterium_phage(50.0%)

protease,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_060564962.1\|2604018_2605329_-\|transposase	ISL3 family transposase	A0A2H4PDF8	Mycobacterium_phage	4.5e-83	42.5
WP_155268194.1\|2605849_2605993_+	hypothetical protein	NA	NA	NA	NA
WP_065367069.1\|2607475_2607940_+	hypothetical protein	NA	NA	NA	NA
WP_003857996.1\|2608020_2608377_+	DUF3817 domain-containing protein	NA	NA	NA	NA
WP_003860315.1\|2608451_2609072_-	RdgB/HAM1 family non-canonical purine NTP pyrophosphatase	A0A0P0A2M4	Ugandan_cassava_brown_streak_virus	2.3e-05	26.9
WP_060564964.1\|2609098_2609836_-	ribonuclease PH	NA	NA	NA	NA
WP_040967553.1\|2610021_2611056_+\|transposase	IS630 family transposase	NA	NA	NA	NA
WP_081299906.1\|2611109_2611403_-	hypothetical protein	NA	NA	NA	NA
WP_060564966.1\|2613691_2614402_+\|transposase	IS6 family transposase	A0A077SL39	Escherichia_phage	1.5e-77	59.0
WP_081299862.1\|2614394_2615252_+	arsenic resistance protein	NA	NA	NA	NA
WP_065367255.1\|2615248_2616070_-	M23 family metallopeptidase	W8ED04	Mycobacterium_phage	6.8e-21	48.0
WP_060564970.1\|2616812_2617091_-	amino acid acetyltransferase	NA	NA	NA	NA
WP_060564974.1\|2619776_2620817_-	SURF1 family protein	NA	NA	NA	NA
WP_034983522.1\|2621570_2622881_+\|transposase	ISL3-like element IS31831 family transposase	A0A2H4PDF8	Mycobacterium_phage	1.0e-82	42.2
WP_011896442.1\|2624307_2624673_-	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_060564975.1\|2624849_2625434_-	copper resistance protein CopC	NA	NA	NA	NA
WP_065367071.1\|2625693_2627850_+	bifunctional copper resistance protein CopD/cytochrome c oxidase assembly protein	NA	NA	NA	NA
WP_018297431.1\|2628196_2628988_+	M23 family metallopeptidase	O03937	Lactobacillus_phage	3.3e-20	44.8
WP_060564978.1\|2629132_2629465_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_035123040.1\|2629566_2630274_+	thioredoxin domain-containing protein	NA	NA	NA	NA
WP_035123041.1\|2630283_2630934_+	vitamin K epoxide reductase family protein	NA	NA	NA	NA
WP_075348333.1\|2630980_2631304_-	hypothetical protein	NA	NA	NA	NA
WP_060564980.1\|2633059_2633968_+	cation transporter	NA	NA	NA	NA
WP_081299863.1\|2633993_2634665_-	NADPH-dependent F420 reductase	NA	NA	NA	NA
WP_107111930.1\|2634865_2635399_+	DinB family protein	NA	NA	NA	NA
WP_060564983.1\|2636944_2637340_+	heavy metal-responsive transcriptional regulator	NA	NA	NA	NA
WP_060564985.1\|2637476_2638451_+	arsenic resistance protein	NA	NA	NA	NA
WP_040968218.1\|2639875_2641204_-	DUF2254 domain-containing protein	NA	NA	NA	NA
WP_040967800.1\|2642742_2643510_-	MBL fold metallo-hydrolase	NA	NA	NA	NA
WP_060564990.1\|2643612_2644467_-	glutamate racemase	NA	NA	NA	NA
WP_040967802.1\|2644517_2645144_+	hypothetical protein	NA	NA	NA	NA
WP_011015181.1\|2645153_2645648_-	MarR family transcriptional regulator	NA	NA	NA	NA
WP_060564992.1\|2645677_2646427_-\|protease	rhomboid family intramembrane serine protease	NA	NA	NA	NA
WP_065367072.1\|2646423_2647338_-	P1 family peptidase	NA	NA	NA	NA
WP_060564997.1\|2647337_2647877_-	DUF2017 domain-containing protein	NA	NA	NA	NA
WP_074493708.1\|2647889_2648264_-\|protease	ATP-dependent Clp protease adapter ClpS	NA	NA	NA	NA

DBSCAN-SWA_6

3183249 : 3236033

Streptococcus_phage(13.33%)

transposase,integrase

attL 3181968:3181987|attR 3236076:3236095

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
3181968:3181987	attL	NA	NA	NA	NA
WP_040968032.1\|3183249_3183540_+\|transposase	transposase	NA	NA	NA	NA
WP_040968033.1\|3184083_3184290_+	hypothetical protein	NA	NA	NA	NA
WP_065367186.1\|3184565_3186128_-	hypothetical protein	NA	NA	NA	NA
WP_003860174.1\|3186912_3187539_-	recombinase family protein	A0A286S1P7	Klebsiella_phage	1.9e-23	36.4
WP_011013963.1\|3187888_3188248_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_065367187.1\|3188247_3188844_+	cadmium transporter	NA	NA	NA	NA
WP_003859023.1\|3189102_3190524_-	mercury(II) reductase	A0A2K5B2C5	Erysipelothrix_phage	1.2e-44	30.0
WP_003859021.1\|3190622_3191012_+	heavy metal-responsive transcriptional regulator	NA	NA	NA	NA
WP_065367188.1\|3191502_3192213_-\|transposase	IS6 family transposase	A0A077SL39	Escherichia_phage	1.4e-78	59.4
WP_003862073.1\|3192316_3192628_-	hypothetical protein	NA	NA	NA	NA
WP_040968043.1\|3192624_3192867_-	DUF2892 domain-containing protein	NA	NA	NA	NA
WP_065367189.1\|3193103_3194405_-	APC family permease	NA	NA	NA	NA
WP_065367190.1\|3194470_3195952_-	multicopper oxidase family protein	NA	NA	NA	NA
WP_003862069.1\|3195948_3196215_-	hypothetical protein	NA	NA	NA	NA
WP_081299874.1\|3196884_3197433_+\|integrase,transposase	DDE-type integrase/transposase/recombinase	Q8W6R2	Burkholderia_virus	2.2e-39	53.6
WP_075348430.1\|3197393_3197678_+	heavy-metal-associated domain-containing protein	NA	NA	NA	NA
WP_081299875.1\|3197763_3198504_+	Crp/Fnr family transcriptional regulator	NA	NA	NA	NA
WP_011015535.1\|3198659_3198896_+	heavy-metal-associated domain-containing protein	NA	NA	NA	NA
WP_011015536.1\|3199101_3199419_+	hypothetical protein	NA	NA	NA	NA
WP_060565379.1\|3200062_3201940_+	cadmium-translocating P-type ATPase	E4ZFI9	Streptococcus_phage	6.0e-105	37.2
WP_003861174.1\|3203147_3203522_-	thioredoxin	A0A1J0GW78	Streptomyces_phage	4.5e-12	38.7
WP_060565381.1\|3203707_3203914_+	heavy-metal-associated domain-containing protein	NA	NA	NA	NA
WP_011015541.1\|3204086_3205433_+	MFS transporter	NA	NA	NA	NA
WP_003861180.1\|3205392_3205575_-	hypothetical protein	NA	NA	NA	NA
WP_081299876.1\|3205585_3206188_-	PadR family transcriptional regulator	NA	NA	NA	NA
WP_065367192.1\|3206394_3207927_-	replicative DNA helicase	A0A1P8VVQ6	Streptococcus_phage	9.2e-88	42.0
WP_003855068.1\|3208534_3208987_-	50S ribosomal protein L9	NA	NA	NA	NA
WP_060565383.1\|3209043_3209721_-	single-stranded DNA-binding protein	A0A1P8D5R5	Corynebacterium_phage	2.9e-49	52.7
WP_003855074.1\|3209757_3210045_-	30S ribosomal protein S6	NA	NA	NA	NA
WP_003861194.1\|3210404_3210596_-	hypothetical protein	NA	NA	NA	NA
WP_011015546.1\|3210592_3212053_-	DUF2029 domain-containing protein	NA	NA	NA	NA
WP_060565384.1\|3212098_3214261_-	penicillin-binding protein	NA	NA	NA	NA
WP_065367193.1\|3214352_3214745_-	hypothetical protein	NA	NA	NA	NA
WP_003855083.1\|3214936_3215410_+	MarR family transcriptional regulator	NA	NA	NA	NA
WP_081299877.1\|3215437_3216382_+	universal stress protein	NA	NA	NA	NA
WP_003861203.1\|3216413_3216911_+	hypothetical protein	NA	NA	NA	NA
WP_038586445.1\|3216978_3217302_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA
WP_060565387.1\|3217322_3218261_-	rhodanese-related sulfurtransferase	NA	NA	NA	NA
WP_065367195.1\|3218308_3219574_-	FtsX-like permease family protein	NA	NA	NA	NA
WP_003855103.1\|3219570_3220263_-	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	1.0e-38	43.1
WP_060565535.1\|3220266_3222105_-	HlyD family efflux transporter periplasmic adaptor subunit	NA	NA	NA	NA
WP_003855107.1\|3222471_3223563_+	inositol-3-phosphate synthase	A0A0H4IPK5	Stenotrophomonas_phage	8.6e-72	42.4
WP_075348539.1\|3223638_3224193_-	hypothetical protein	NA	NA	NA	NA
WP_060565390.1\|3224258_3225746_-	DUF1846 domain-containing protein	NA	NA	NA	NA
WP_006285365.1\|3226114_3226528_+	hypothetical protein	NA	NA	NA	NA
WP_006285366.1\|3226704_3227610_+\|integrase,transposase	DDE-type integrase/transposase/recombinase	U5P429	Shigella_phage	3.4e-13	27.5
WP_081299886.1\|3227923_3229129_-\|transposase	IS30 family transposase	Q9MBM9	Staphylococcus_prophage	2.1e-31	32.7
WP_060565391.1\|3229637_3230135_-	DNA starvation/stationary phase protection protein Dps	NA	NA	NA	NA
WP_075348438.1\|3230280_3231096_+	Fpg/Nei family DNA glycosylase	NA	NA	NA	NA
WP_060565393.1\|3231332_3232484_+	RtcB family protein	A0A0M5M6X2	Mycobacterium_phage	1.4e-136	63.2
WP_003855120.1\|3232490_3232967_-	methylated-DNA--[protein]-cysteine S-methyltransferase	A0A0G2Y1B6	Acanthamoeba_polyphaga_mimivirus	5.0e-16	42.7
WP_075348439.1\|3232981_3233995_-	zinc-binding alcohol dehydrogenase family protein	NA	NA	NA	NA
WP_107111897.1\|3234846_3236033_-\|transposase	IS3-like element IS1206 family transposase	U5P429	Shigella_phage	5.4e-27	33.7
3236076:3236095	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP004062

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CRISPR-Cas detection and classification

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Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection