CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Prophage number
NZ_CP013983	Staphylococcus equorum strain KM1031 plasmid unnamed3, complete sequence	0 crisprs	NA	0
NZ_CP013981	Staphylococcus equorum strain KM1031 plasmid unnamed1, complete sequence	0 crisprs	csa3	1
NZ_CP013980	Staphylococcus equorum strain KM1031, complete genome	2 crisprs	cas3,csa3,DEDDh,DinG,WYL	7
NZ_CP013982	Staphylococcus equorum strain KM1031 plasmid unnamed2, complete sequence	0 crisprs	csa3	0

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

26151 : 33424

Staphylococcus_phage(50.0%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002509693.1\|26151_26466_+	winged helix-turn-helix transcriptional regulator	A0A2H4PQT4	Staphylococcus_phage	3.6e-31	60.6
WP_037579786.1\|26468_27758_+	arsenite efflux transporter membrane subunit ArsB	A0A2H4PQU3	Staphylococcus_phage	4.7e-186	80.4
WP_002509695.1\|27775_28171_+	arsenate reductase (thioredoxin)	A0A2H4PQT9	Staphylococcus_phage	2.6e-58	82.0
WP_081288862.1\|28477_29020_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_065367574.1\|29134_30586_+	SulP family inorganic anion transporter	A0A2H4J153	uncultured_Caudovirales_phage	1.9e-119	50.7
WP_001836859.1\|30599_31013_+	universal stress protein	NA	NA	NA	NA
WP_155762606.1\|32265_32430_+	hypothetical protein	NA	NA	NA	NA
WP_155762607.1\|32661_33105_-	hypothetical protein	A0A1S5SBP9	Streptococcus_phage	3.3e-06	28.2
WP_081288864.1\|33193_33424_-	hypothetical protein	A0A1S5SBP9	Streptococcus_phage	2.4e-08	42.4

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP013980

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP013980_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP013980_1

1753253-1753351

Orphan

Consensus_repeat	Method
TCTTATGCATGAGCTTTAGCTCAGGCGTTCCTTT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP013980_1

>merge|NZ_CP013980|1|1753253-1753351|CRISPRCasFinder
TCTTATGCATGAGCTTTAGCTCAGGCGTTCCTTTTTTAATTCCCCAAATTATTGGGATGAGTTGCTCTTATGCATGAGCTTTAGCTCAGGCGTTCCTTT

>NZ_CP013980|1|1|1753253-1753351|CRISPRCasFinder
TCTTATGCATGAGCTTTAGCTCAGGCGTTCCTTT	TTTAATTCCCCAAATTATTGGGATGAGTTGC
TCTTATGCATGAGCTTTAGCTCAGGCGTTCCTTT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP013980.1\|WP_021339963.1\|1749947_1750370_-\|glyoxalase/bleomycin-resistance/extradiol-dioxygenase-family-protein	unknown	unknown	gnl\|CDD\|225356
NZ_CP013980.1\|WP_002507134.1\|1745484_1746576_-\|YeeE/YedE-family-protein	unknown	unknown	gnl\|CDD\|377230
NZ_CP013980.1\|WP_021339959.1\|1753855_1755544_+\|dihydroxy-acid-dehydratase	unknown	unknown	gnl\|CDD\|234861
NZ_CP013980.1\|WP_021339955.1\|1760560_1761601_+\|3-isopropylmalate-dehydrogenase	unknown	unknown	gnl\|CDD\|234832
NZ_CP013980.1\|WP_021339965.1\|1746794_1747436_-\|redox-sensing-transcriptional-repressor-Rex	unknown	unknown	gnl\|CDD\|235486
NZ_CP013980.1\|WP_021339961.1\|1752100_1752763_-\|tRNA-(adenosine(37)-N6)-threonylcarbamoyltransferase-complex-dimerization-subunit-type-1-TsaB	unknown	unknown	gnl\|CDD\|274750
NZ_CP013980.1\|WP_021339966.1\|1744127_1745090_-\|LacI-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|380484
NZ_CP013980.1\|WP_021339952.1\|1770997_1771456_-\|SprT-family-protein	unknown	unknown	gnl\|CDD\|235290
NZ_CP013980.1\|WP_021339960.1\|1752743_1753205_-\|tRNA-(adenosine(37)-N6)-threonylcarbamoyltransferase-complex-ATPase-subunit-type-1-TsaE	unknown	unknown	gnl\|CDD\|223873
NZ_CP013980.1\|WP_002507123.1\|1757343_1757817_+\|acetolactate-synthase-small-subunit	unknown	unknown	gnl\|CDD\|183365
NZ_CP013980.1\|WP_002507118.1\|1762990_1763566_+\|3-isopropylmalate-dehydratase-small-subunit	unknown	unknown	gnl\|CDD\|179314
NZ_CP013980.1\|WP_021339956.1\|1759028_1760564_+\|2-isopropylmalate-synthase	unknown	unknown	gnl\|CDD\|234864
NZ_CP013980.1\|WP_002507135.1\|1745233_1745461_-\|sulfurtransferase-TusA-family-protein	unknown	unknown	gnl\|CDD\|223502
NZ_CP013980.1\|WP_065367467.1\|1750642_1751671_-\|tRNA-(adenosine(37)-N6)-threonylcarbamoyltransferase-complex-transferase-subunit-TsaD	unknown	unknown	gnl\|CDD\|236585
NZ_CP013980.1\|WP_021339964.1\|1747586_1749515_+\|ABC-F-family-ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|223562
NZ_CP013980.1\|WP_021339953.1\|1763596_1764865_+\|threonine-ammonia-lyase-IlvA	unknown	unknown	gnl\|CDD\|236318
NZ_CP013980.1\|WP_080656242.1\|1757853_1758873_+\|ketol-acid-reductoisomerase	unknown	unknown	gnl\|CDD\|235491
NZ_CP013980.1\|WP_065367468.1\|1761618_1762989_+\|3-isopropylmalate-dehydratase-large-subunit	unknown	unknown	gnl\|CDD\|235490
NZ_CP013980.1\|WP_021339958.1\|1755556_1757347_+\|biosynthetic-type-acetolactate-synthase-large-subunit	unknown	unknown	gnl\|CDD\|180919
NZ_CP013980.1\|WP_002507128.1\|1751663_1752128_-\|ribosomal-protein-alanine-N-acetyltransferase	unknown	unknown	gnl\|CDD\|273701

Protein	Function_ID	Function_description	E-value
NZ_CP013980.1\|WP_021339963.1\|1749947_1750370_-\|glyoxalase/bleomycin-resistance/extradiol-dioxygenase-family-protein	gnl\|CDD\|225356	COG2764, PhnB, Uncharacterized protein conserved in bacteria [Function unknown].	1.21626e-27
NZ_CP013980.1\|WP_002507134.1\|1745484_1746576_-\|YeeE/YedE-family-protein	gnl\|CDD\|377230	pfam04143, Sulf_transp, Sulphur transport. This is an integral membrane protein. It is predicted to have a function in the transport of sulphur-containing molecules. It contains several conserved glycines and an invariant cysteine that is probably an important functional residue.	4.7433e-114
NZ_CP013980.1\|WP_021339959.1\|1753855_1755544_+\|dihydroxy-acid-dehydratase	gnl\|CDD\|234861	PRK00911, PRK00911, dihydroxy-acid dehydratase; Provisional.	0
NZ_CP013980.1\|WP_021339955.1\|1760560_1761601_+\|3-isopropylmalate-dehydrogenase	gnl\|CDD\|234832	PRK00772, PRK00772, 3-isopropylmalate dehydrogenase; Provisional.	0
NZ_CP013980.1\|WP_021339965.1\|1746794_1747436_-\|redox-sensing-transcriptional-repressor-Rex	gnl\|CDD\|235486	PRK05472, PRK05472, redox-sensing transcriptional repressor Rex; Provisional.	8.87454e-106
NZ_CP013980.1\|WP_021339961.1\|1752100_1752763_-\|tRNA-(adenosine(37)-N6)-threonylcarbamoyltransferase-complex-dimerization-subunit-type-1-TsaB	gnl\|CDD\|274750	TIGR03725, T6A_YeaZ, tRNA threonylcarbamoyl adenosine modification protein YeaZ. This family describes a protein family, YeaZ, now associated with the threonylcarbamoyl adenosine (t6A) tRNA modification. Members of this family may occur as fusions with ygjD (previously gcp) or the ribosomal protein N-acetyltransferase rimI, and is frequently encoded next to rimI. [Protein synthesis, tRNA and rRNA base modification].	2.99277e-63
NZ_CP013980.1\|WP_021339966.1\|1744127_1745090_-\|LacI-family-transcriptional-regulator	gnl\|CDD\|380484	cd01542, PBP1_TreR-like, ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of TreR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type 1 periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type 1 periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.	2.71205e-92
NZ_CP013980.1\|WP_021339952.1\|1770997_1771456_-\|SprT-family-protein	gnl\|CDD\|235290	PRK04351, PRK04351, SprT family protein.	2.34734e-77
NZ_CP013980.1\|WP_021339960.1\|1752743_1753205_-\|tRNA-(adenosine(37)-N6)-threonylcarbamoyltransferase-complex-ATPase-subunit-type-1-TsaE	gnl\|CDD\|223873	COG0802, COG0802, Predicted ATPase or kinase [General function prediction only].	5.15544e-58
NZ_CP013980.1\|WP_002507123.1\|1757343_1757817_+\|acetolactate-synthase-small-subunit	gnl\|CDD\|183365	PRK11895, ilvH, acetolactate synthase 3 regulatory subunit; Reviewed.	1.96309e-29
NZ_CP013980.1\|WP_002507118.1\|1762990_1763566_+\|3-isopropylmalate-dehydratase-small-subunit	gnl\|CDD\|179314	PRK01641, leuD, 3-isopropylmalate dehydratase small subunit.	2.32276e-118
NZ_CP013980.1\|WP_021339956.1\|1759028_1760564_+\|2-isopropylmalate-synthase	gnl\|CDD\|234864	PRK00915, PRK00915, 2-isopropylmalate synthase; Validated.	0
NZ_CP013980.1\|WP_002507135.1\|1745233_1745461_-\|sulfurtransferase-TusA-family-protein	gnl\|CDD\|223502	COG0425, SirA, Predicted redox protein, regulator of disulfide bond formation [Posttranslational modification, protein turnover, chaperones].	3.09362e-18
NZ_CP013980.1\|WP_065367467.1\|1750642_1751671_-\|tRNA-(adenosine(37)-N6)-threonylcarbamoyltransferase-complex-transferase-subunit-TsaD	gnl\|CDD\|236585	PRK09604, PRK09604, tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD.	0
NZ_CP013980.1\|WP_021339964.1\|1747586_1749515_+\|ABC-F-family-ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|223562	COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only].	0
NZ_CP013980.1\|WP_021339953.1\|1763596_1764865_+\|threonine-ammonia-lyase-IlvA	gnl\|CDD\|236318	PRK08639, PRK08639, threonine dehydratase; Validated.	0
NZ_CP013980.1\|WP_080656242.1\|1757853_1758873_+\|ketol-acid-reductoisomerase	gnl\|CDD\|235491	PRK05479, PRK05479, ketol-acid reductoisomerase; Provisional.	0
NZ_CP013980.1\|WP_065367468.1\|1761618_1762989_+\|3-isopropylmalate-dehydratase-large-subunit	gnl\|CDD\|235490	PRK05478, PRK05478, 3-isopropylmalate dehydratase large subunit.	0
NZ_CP013980.1\|WP_021339958.1\|1755556_1757347_+\|biosynthetic-type-acetolactate-synthase-large-subunit	gnl\|CDD\|180919	PRK07282, PRK07282, acetolactate synthase large subunit.	0
NZ_CP013980.1\|WP_002507128.1\|1751663_1752128_-\|ribosomal-protein-alanine-N-acetyltransferase	gnl\|CDD\|273701	TIGR01575, rimI, ribosomal-protein-alanine acetyltransferase. Members of this model belong to the GCN5-related N-acetyltransferase (GNAT) superfamily. This model covers prokarotes and the archaea. The seed contains a characterized accession for Gram negative E. coli. An untraceable characterized accession (PIR\|S66013) for Gram positive B. subtilis scores well (205.0) in the full alignment. Characterized members are lacking in the archaea. Noise cutoff (72.4) was set to exclude M. loti paralog of rimI. Trusted cutoff (80.0) was set at next highest scoring member in the mini-database. [Protein synthesis, Ribosomal proteins: synthesis and modification].	3.69914e-31

>NZ_CP013980.1|WP_021339960.1|1752743_1753205_-|tRNA-(adenosine(37)-N6)-threonylcarbamoyltransferase-complex-ATPase-subunit-type-1-TsaE
MIKIKDLDGMAVFATTLAKYLSAGDLVLLNGDLGAGKTTLSQFIGKALGVKRNINSPTFNIIKSYQGSNLRLHHMDCYRLEDSEEDLGFNEYFEDEAVILIEWSQFISEFLPPSSLSINITTLNESERNIELEAQGVHYAKIKEEVERELSVD
>NZ_CP013980.1|WP_021339961.1|1752100_1752763_-|tRNA-(adenosine(37)-N6)-threonylcarbamoyltransferase-complex-dimerization-subunit-type-1-TsaB
MNYLLIDTSNQPLSVALMQDDKVLSELNSNEKVNHSVQLMPAIEQVIAESKVLKENIDVIVVAQGPGSYTGLRIGVTVAKTLAYALNAELYGVSSLKALAATIKEDTRLIVPVFDARREAVYTGVYQYEENQLVQVEQDQYLPIEELLDLLHKTGQSYVFVGTDTENLEELLDSTCVANVPLAKNMKPLIETAENIHQFTPNYIKISEAERNWLNQQNKS
>NZ_CP013980.1|WP_002507128.1|1751663_1752128_-|ribosomal-protein-alanine-N-acetyltransferase
MVKPTEQELNIRLMNTKDVPQVFDIERNSFNDSSWSIDAFYHEVEQNEFANYFIIEFNEKIIGYIGLWIVIDQAQITTVAIDNEYRGYGLGQLLLKYVMNFVREKCEMMSLEVRVDNDIAQHVYTNLGFKYGGKRKNYYGEGEDALVMWVNFNE
>NZ_CP013980.1|WP_065367467.1|1750642_1751671_-|tRNA-(adenosine(37)-N6)-threonylcarbamoyltransferase-complex-transferase-subunit-TsaD
MSEATLVLAIESSCDETSVSIIKNGTEILSNIVLSQIESHKRFGGVVPEVASRHHVEGITTTIDESLVKANVTMHDIDAVAVTQGPGLIGALLVGINAAKALAFAYDKPLIPVHHIAGHIYANHLETPLQFPLMALIVSGGHTELVYMKDHLSFEVIGETRDDAVGEAYDKVARTIGLSYPGGPQVDRLAAEGKDNYQFPRIWLEKDSYDFSFSGLKSAVINKLHNLKQKDEEINKADVATSFQNSVVEVLVGKAISACEHYDVKQLIVAGGVASNKGLRANLAEACEAHNITLCIPSPSLCTDNAAMIGSAGHYLYQAGVTADMTLNGFNSMDIEQFSVKY
>NZ_CP013980.1|WP_021339963.1|1749947_1750370_-|glyoxalase/bleomycin-resistance/extradiol-dioxygenase-family-protein
MKSVQYFNFQNSLAALNFYEKHLGATDIQRVGGDHEMFADMPEEYDIDKNFTMNASFKILGETFYCSDTMKNKKIDNSGAIVAFTFDYSNEADKQQAKAFFNKAIEGGCEATMPLDKTEWSELYGMFNDPFGVTWMINAE
>NZ_CP013980.1|WP_021339964.1|1747586_1749515_+|ABC-F-family-ATP-binding-cassette-domain-containing-protein
MILLQLNDLTKSFDGEDIFNNVDFEVKTGERIGIVGRNGAGKSTLMKIIAGVETYDSGQVSKSKNLKLGYLTQQMTLNTNQTVFDEMSKPFESMKKLELEMKFETDWLAQHADEYDTESYKTHIDRYESLSNQFEQQEGYQYESKIKTVLHGLNFSEADFNRPINDFSGGQKTRLSLAQMLLSEPDLLLLDEPTNHLDMETTQWLESYLNYFKGAIVIISHDRYFLDKIVNQIYDVALGDVQHYVGNYGQFIEQRDKYYEKRMQEYESQQAEIKKLETFVEKNIARASTTGMAKSRRKMLEKMERVNKPMIDAKSANIQFDFDRNTGNDVFHIKNLEIGYEEAITKGINIEATKGDHIAIIGPNGIGKSTLIKTVAGLQQKISGEITTGANLKVGYYDQKQAEFKSNKTILDYLWDQYPTMNEKDIRAVLGRFLFVQDDVKKIINDLSGGEKARLQLALLMLERNNVLILDEPTNHLDIDSKEMLEQALSDFKGTILFVSHDRYFINELANKVYDLDTTGGTMYLGDYQYYIEKLEEKAAIQAKKELDNPTKTEVSASQNHNYVDQKQQKREQRQVERKIEQCETNIEIYEQEINNINEQLTQPDVYSNPEKANDLAIEKEIAEQKLEQVMDEWAELQELLI
>NZ_CP013980.1|WP_021339965.1|1746794_1747436_-|redox-sensing-transcriptional-repressor-Rex
MANQSEKIPRATLKRLPLYYRFVNTLKSKGIDRVNSKTISEGLNIDSATIRRDFSYFGELGKKGYGYNIDSLLHFFKNEISENDEIKIAIVGVGNLGKALLTYNFSIHDEMTITEAFDIRDEIIGTQIGKVTVSPFDKITDILAQEHIDVVILTTPEEVAQHVADTLVKTGVKGILNFTPSRVLTPSDVQVHHIDLGIELQSLLFFMKNYSNK
>NZ_CP013980.1|WP_002507134.1|1745484_1746576_-|YeeE/YedE-family-protein
MTWLVISGLIVGALLGFVMQRTRFCLAGGFRDMYVQKSNKMFYALLIAISVQSIGLLILTSTGLVEIPESTYPIIGTVIGSFIFGIGIILSGGCATGTWYRAGEGLIGSWMALIAYGFTAAATKFGLLLPLMNGVNKPTNVNSSMAQTTGIPTWVWVALLTIITILLVVKTLRKPKPKFAIPKLKQKYTGIRHYLFEKKYHPFVAAIAVGLIALIAWPVSESTGRMYGLGITTPSANIVQFFVTGDLKLIDWGVFLVLGIFVGSYIAAKGAKEFKWRMPDKKTIRNSVIGGVCMGFGASVAGGCSIGNGLVETATMSWKGWIALASMILGAWFMSYFIFIKPMKKAQRQQTSENTISTQTQTT
>NZ_CP013980.1|WP_002507135.1|1745233_1745461_-|sulfurtransferase-TusA-family-protein
MVHELGTVGMVCPFPLIEAQKKMDTMNNGEELKIDFDCTQATEALPNWAAEKGYPITNYEQLDDASWTITIQKAE
>NZ_CP013980.1|WP_021339966.1|1744127_1745090_-|LacI-family-transcriptional-regulator
MKNISDIAKIAGVSKSTVSRYLNNGSVSLKTKQKLDKIIQENDYQPNQFAQSLRAHRTNMIGAIIPRMNSYAVDETIKGVKTVCDDLNYRLLLNYTNIDTELEIDALETFYRSKVDGIILMATEITDRHIEVINKIDVPVIIVGQEHKDLHCIIHNDFHAGYMVGEGLGLKGFKNIQFFGVTETDVAVGIHRKKGLISGLAKYNVKPHISQTSFNYNEAMIDVSKELQTQPNYDAVVGATDSIALAVHKITSEDTTQNGDKFIVGFGGDPVTEIVSPSIHTVNYHFEYAGEVAMSKLNQLIQHQPIEQRISIDVGLSFKN
>NZ_CP013980.1|WP_021339959.1|1753855_1755544_+|dihydroxy-acid-dehydratase
MRSDMIKKGDQQAPARSLLHATGALEKPTDMNKPFVAICNSYIDIVPGHVHLRELADIAKEAIREAGAIPFEFDTIGVDDGIAMGHIGMRYSLPSREIIADSAETVINAHWFDGVFYIPNCDKITPGMILASVRTNVPAIFCSGGPMKAGLSSEGKALTLSSMFEAVGAFKDGSISKDEFLDMEQNACPTCGSCSGMFTANSMNCLMEVLGLSLPYNGTALAVSDQRREMIREAAFKLVDNIKNDIKPRDIVTSEAIDDAFALDMAMGGSTNTVLHTLAIANEAGIDYDLTRINEIAKKTPYLSKIAPSSSYSMHDVHEAGGVPAIINELFKREGTLHPDRITATGKTLRENNEGKEILNSDVIRHLDNPYDKQGGLSILYGNLAPNGAVIKVGGVDPSIKVFKGKAICFDSHDDAVEAIDNHVVREGHVVVIRYEGPKGGPGMPEMLAPTSSIVGRGLGKDVALITDGRFSGATRGIAVGHISPEAASGGPIGLIKDGDEITIDLTNRTLNVEVSNETLNDRKEDVKPFKAKVKTGYLARYTALVTSANTGGVMQVPENLI
>NZ_CP013980.1|WP_021339958.1|1755556_1757347_+|biosynthetic-type-acetolactate-synthase-large-subunit
MSKHTETLEIEKSENFESLEAVEPIEPEVKLEQETIDEMRSGSELLVESLANESVDFIFGYPGGAVLPLYDTLYDGRIKHILARHEQGATHAAEGYARVSGNTGVVVVTSGPGATNAITGIADAYSDSLPLVVITGQVATPGIGKDAFQEADLLSMTTPITKHNYQVKNVQDIPKIIHEAFHIANTGRKGPVVIDFPKDMGVLSTNAQVTNELELPGYTIPNKPKKDDIQKLRDFLKSAKKPLVLSGAGINHAKANDLFTEFVSRHQLPVVSTLLGLGAIPYEHPLFLGMGGMHGSYASNMALTECDLLINFGSRFDDRLASNPDEFAPNAKIVHVDIDPSEINKIIKVDLGIVADCKATLEFLLDFDSYSIRHEDWLETCNENKTQQPFAYSDDEDGVFSKPQRAIEYIGEITNGDAIVTTDVGQHQMWVAQYYPFKNHGQLVTSGGLGTMGFGIPAAIGAKLAKPDKPVVAFVGDGGFQMTNQEMGILEEYGIDIKIVIVNNGTLGMVKQWQDKFFNKRFSHSVFNGQPDFIKLSEAYNVKAYLIDDPTHLEQKLDEAFQHDGPALIDIRISPVEIVSPMVPSGKANHEMEGLL
>NZ_CP013980.1|WP_002507123.1|1757343_1757817_+|acetolactate-synthase-small-subunit
MRRTFRTKVRDKAGTLNRLTSIFVRRQFNIVNLSATPTLEEGISNITFVAEIPDTDVLRTLLQQLEKQINIIEVEDITDTNTYNRELVLVKLQTPNNHQELQNLIKPYDALVSILKNEETYTYLQASGPQYTMDNLLDDLSSYKIEQVSRTGSAGII
>NZ_CP013980.1|WP_080656242.1|1757853_1758873_+|ketol-acid-reductoisomerase
MEDYIMTTVYYDETVKKDALQGKKVAVLGYGSQGHAHAQNLKDNGYDVIIGIRPGRSFDKAKDDGFEVYPVNEAAKQADVIMVLLPDEAQGKIYKEEIEPNLEANNALVFAHGFNIHFDVINPPKNVDVFLVAPKGPGHLVRRTFAEGSAVPALFAVEQDASGEATDLALSYAKGIGATRAGVLETSFKEETETDLFGEQAVLCGGTTKLIQTGFETLVEAGYQPEIAYFEVLHEMKLIVDLLYEGGMENMRYSISNTAEFGDYVSGPRIITPDVKDNMKAVLEDIQQGKFSDRFIKDNENNFEEFHKLREEQHGHQIEAVGKELREMMPFIKSKSIEK
>NZ_CP013980.1|WP_021339956.1|1759028_1760564_+|2-isopropylmalate-synthase
MSSHIQIFDTTLRDGEQTPGVNFSFDERLKIANQLEKWGVDIIEAGFPASSNGSFKSVEAISKALTTTAVCGLARCVKKDIDAVYEATKEAAKPRIHVFIATSPIHRDSKLMMSKEEVLASITEHVSYAKKYFDLVQFSPEDATRTELPFLIECVQTAVDAGASVINVPDTVGFSYPSEYGQIFKTLQESIKTDHEVIYSAHCHDDLGLAVANSMAAIENGAKRIEGTLNGIGERAGNAALEEVALGLYVRQDHYGNQSRINLEETKQTSDLIARFAGIRVPRNKAIVGQNAFSHESGIHQDGIIKNPETYEIMTPQLVGVKTTELPLGKLSGKHAFAEKLINLGYDVEPEEQKVLFKQFKTIADKKKAVTDRDIHALIQGTEHEQNAIYQVETLQLQFVSNGLQSAVVVIKDKDGNTYQDSSIGTGSIVAVYNAIDRIFDLNTELIEYRIDSVTEGTDAQAEVHVQIKIDNQIVTGVGIDHDILLASCKSYVEAHAKYAANSATEEGIHS
>NZ_CP013980.1|WP_021339955.1|1760560_1761601_+|3-isopropylmalate-dehydrogenase
MSYKIVALPGDGIGPEIMKGPLEILAQLSQDFNFNYDLESHDFGGVAIDHHGKPLPESTLNACQNADAILLGAVGGPKWTDPNNRPEQGLLGIRKALGLFANIRPTTVTNGTSHLSPIKEERVAGTDFILVRELTGGIYFGEPKKLGDDDALDSLTYTRSEIERIARVGFDLAQKRNKKLTSVDKENVLSSSKLWRRVINEVSQDYPEVEVNHLLVDACAMHLITNPSQFDVIVTENLFGDILSDEASVIPGSLGLSPSASFSEQGPRLYEPIHGSAPDIANQDIANPFGMLLSVVMCLRESLNEPQAAEKLETVIYQLIKEGKTTRDLNGNYNTSDIINFVKENL
>NZ_CP013980.1|WP_065367468.1|1761618_1762989_+|3-isopropylmalate-dehydratase-large-subunit
MGKTLFDKVWNKHVLTGKEGDPQLLYIDLHLIHEVTSPQAFEGLRLQNRQLRRPDLTYATLDHNVPTVDIFNIKDEIANKQITTLQNNAKEFGVHIFDMGSDEQGIVHMVGPETGLTQPGKTIVCGDSHTATHGAFGAIAFGIGTSEVEHVFATQSLWQTKPKNLKIDVTGKLPTGVYAKDIILHLISQYGVDFGTGYALEFSGEAIRSLSMEARMTICNMAIEAGAKYGMMEPDETTFEYVKGRPYATNFDNSVDEWRELYTDDDAEFDRVIEMDVSDLEPQVTWGTSPEMGVNFSTPFPEIEDVNDERAYNYMDLKPGQKAEDIDLGYVFLGSCTNARLSDLVEASHIVKGNQVHPNITAIVVPGSRTVKKEAEKIGLDKIFKEAGFDWREPGCSMCLGMNPDQVPNGVHCASTSNRNFEGRQGKGARTHLVSPAMAAAAAINGKFVDVRKVVV
>NZ_CP013980.1|WP_002507118.1|1762990_1763566_+|3-isopropylmalate-dehydratase-small-subunit
MEIKPITTYTGKVVPLFHDNIDTDQIIPKVHLKRISKSGFGPFAFDEWRYLDDGSDNPDFNPNKPEYKDASILITGDNFGCGSSREHAAWAIKDYGFDIIIAGSYSDIFYMNCTKNAMLPIVLDEEARKHLAQSESITVDLPNQTVSSPDKIFTFDIDETWKNKLVKGLDDVAVTLQYEDEIKSYERAKNF
>NZ_CP013980.1|WP_021339953.1|1763596_1764865_+|threonine-ammonia-lyase-IlvA
MTVKTTVSSKDIDEAYLQIKDTVKETPLQKDHYLSLKYDCNVYLKREDLQWVRSFKLRGAYNAIVALNKEDREMGITCASAGNHAQGVAYTANKLHLDAVIFMPVTTPLQKINQVKFFGGQNVEVILTGDTFDDCLKEALGYTEDNKMNFIDPFNNIYTIAGQGTLAKEIIDQSQEENIQFDYLFAAIGGGGLISGVGTYFKENSPQTSIVGVEPAGASSMYTSVVLENQIVTLPDIDKFVDGASVARVGQITYDISKKVVDDYVQVHEGAVCSTILDMYSKQAIIAEPAGALSITALDNYQAEIKGKTVVCVVSGGNNDINRMKEIEERSLLFEEMKHYFILNFPQRPGALREFVNDVLGPKDDITKFEYLKKSSQNTGTVIIGIQLNNHKDLNNLKKNVNEFDASNIYINENKMLYSLLI
>NZ_CP013980.1|WP_021339952.1|1770997_1771456_-|SprT-family-protein
MDNETLQRLTETISETHFKRSFKHKAYFNKRLKTTGGRYLLQTHNIEINDKQYTKFGEKAVQDIIKHELCHYHLHIQGKGYQHKDKDFKALSKLTGAPRFCSAVEKYEDRAKYIYKCNTCGAQFPRIRKVNTTKMMCGHCKGKLVQHDIVQS

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Crispr_ID: NZ_CP013980_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP013980_2

2588163-2588266

Orphan

Consensus_repeat	Method
AAAGATCAAGCAACAGATAAAGCTAAAGA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP013980_2

>merge|NZ_CP013980|2|2588163-2588266|CRISPRCasFinder
AAAGATCAAGCAACAGATAAAGCTAAAGATAAGGCCAACGAAATTAAAAATGACGACGAGAAAAAAGAAGAATTGAAAGACCAAGCAACAGATAAAGCTAAAGA

>NZ_CP013980|2|2|2588163-2588266|CRISPRCasFinder
AAAGATCAAGCAACAGATAAAGCTAAAGA	TAAGGCCAACGAAATTAAAAATGACGACGAGAAAAAAGAAGAATTG
AAAGACCAAGCAACAGATAAAGCTAAAGA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP013980.1\|WP_002506331.1\|2581491_2582379_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176129
NZ_CP013980.1\|WP_002506333.1\|2580474_2580849_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013980.1\|WP_002511719.1\|2580854_2581382_-\|acyl-CoA-thioesterase	unknown	unknown	gnl\|CDD\|224523
NZ_CP013980.1\|WP_046465723.1\|2582682_2585658_-\|beta-galactosidase	unknown	unknown	gnl\|CDD\|236673
NZ_CP013980.1\|WP_002506312.1\|2588390_2588780_-\|tautomerase-family-protein	unknown	unknown	gnl\|CDD\|379645
NZ_CP013980.1\|WP_002506307.1\|2593491_2593833_-\|MerR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|133384
NZ_CP013980.1\|WP_002511717.1\|2580247_2580436_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013980.1\|WP_021339369.1\|2595155_2596574_-\|sodium:solute-symporter-family-protein	unknown	unknown	gnl\|CDD\|271357
NZ_CP013980.1\|WP_046465724.1\|2579253_2579490_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013980.1\|WP_046465722.1\|2585673_2587062_-\|melibiose:sodium-transporter-MelB	unknown	unknown	gnl\|CDD\|182453
NZ_CP013980.1\|WP_002511730.1\|2593059_2593419_-\|DUF1304-domain-containing-protein	unknown	unknown	gnl\|CDD\|226282
NZ_CP013980.1\|WP_002511729.1\|2590432_2591812_-\|LLM-class-flavin-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|274819
NZ_CP013980.1\|WP_046465718.1\|2596844_2597828_+\|biotin-synthase-BioB	unknown	unknown	gnl\|CDD\|235755
NZ_CP013980.1\|WP_046465725.1\|2577944_2578943_+\|iron-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|376439
NZ_CP013980.1\|WP_002511728.1\|2588907_2590407_-\|sodium:pantothenate-symporter	unknown	unknown	gnl\|CDD\|271369
NZ_CP013980.1\|WP_046465719.1\|2594022_2595027_+\|NADP-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|176190
NZ_CP013980.1\|WP_046465720.1\|2592222_2592987_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|370779
NZ_CP013980.1\|WP_002511722.1\|2587248_2588073_+\|AraC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|367029
NZ_CP013980.1\|WP_046465717.1\|2598047_2598857_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013980.1\|WP_046465726.1\|2576952_2577948_+\|iron-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|376439

Protein	Function_ID	Function_description	E-value
NZ_CP013980.1\|WP_002506331.1\|2581491_2582379_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|176129	cd08438, PBP2_CidR, The C-terminal substrate binding domain of LysR-like transcriptional regulator CidR, contains the type 2 periplasmic binding fold. This CD includes the substrate binding domain of CidR which positively up-regulates the expression of cidABC operon in the presence of acetic acid produced by the metabolism of excess glucose. The CidR affects the control of murein hydrolase activity by enhancing cidABC expression in the presence of acetic acid. Thus, up-regulation of cidABC expression results in increased murein hydrolase activity. This substrate binding domain has significant homology to the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	1.40427e-90
NZ_CP013980.1\|WP_002511719.1\|2580854_2581382_-\|acyl-CoA-thioesterase	gnl\|CDD\|224523	COG1607, COG1607, Acyl-CoA hydrolase [Lipid metabolism].	6.1787e-48
NZ_CP013980.1\|WP_046465723.1\|2582682_2585658_-\|beta-galactosidase	gnl\|CDD\|236673	PRK10340, ebgA, cryptic beta-D-galactosidase subunit alpha; Reviewed.	0
NZ_CP013980.1\|WP_002506312.1\|2588390_2588780_-\|tautomerase-family-protein	gnl\|CDD\|379645	pfam14552, Tautomerase_2, Tautomerase enzyme.	3.7485e-30
NZ_CP013980.1\|WP_002506307.1\|2593491_2593833_-\|MerR-family-transcriptional-regulator	gnl\|CDD\|133384	cd01109, HTH_YyaN, Helix-Turn-Helix DNA binding domain of the MerR-like transcription regulators YyaN and YraB. Putative helix-turn-helix (HTH) MerR-like transcription regulators of Bacillus subtilis, YyaN and YraB, and related proteins; N-terminal domain. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.	6.6026e-21
NZ_CP013980.1\|WP_021339369.1\|2595155_2596574_-\|sodium:solute-symporter-family-protein	gnl\|CDD\|271357	cd10322, SLC5sbd, Solute carrier 5 family, sodium/glucose transporters and related proteins; solute-binding domain. This family represents the solute-binding domain of SLC5 proteins (also called the sodium/glucose cotransporter family or solute sodium symporter family) that co-transport Na+ with sugars, amino acids, inorganic ions or vitamins. Family members include: the human glucose (SGLT1, 2, 4, 5), chiro-inositol (SGLT5), myo-inositol (SMIT), choline (CHT), iodide (NIS), multivitamin (SMVT), and monocarboxylate (SMCT) cotransporters, as well as Vibrio parahaemolyticus glucose/galactose (vSGLT), and Escherichia coli proline (PutP) and pantothenate (PutF) cotransporters. Vibrio parahaemolyticus Na(+)/galactose cotransporter (vSGLT) has 13 transmembrane helices (TMs): TM-1, an inverted topology repeat: TMs1-5 and TMs6-10, and TMs 11-12 (TMs numbered to conform to the solute carrier 6 family Aquifex aeolicus LeuT). One member of this family, human SGLT3, has been characterized as a glucose sensor and not a transporter. Members of this family are important in human physiology and disease.	3.76904e-75
NZ_CP013980.1\|WP_002511729.1\|2590432_2591812_-\|LLM-class-flavin-dependent-oxidoreductase	gnl\|CDD\|274819	TIGR03860, FMN_nitrolo, FMN-dependent oxidoreductase, nitrilotriacetate monooxygenase family. This model represents a distinctive clade, in which all characterized members are FMN-binding, within the larger family of luciferase-like monooxygenases (LLM), among which there are both FMN- and F420-binding enzymes. A well-characterized member is nitrilotriacetate monooxygenase from Aminobacter aminovorans (Chelatobacter heintzii), where nitrilotriacetate is a chelating agent used in detergents. [Unknown function, Enzymes of unknown specificity].	0
NZ_CP013980.1\|WP_002511730.1\|2593059_2593419_-\|DUF1304-domain-containing-protein	gnl\|CDD\|226282	COG3759, COG3759, Predicted membrane protein [Function unknown].	2.76355e-33
NZ_CP013980.1\|WP_046465722.1\|2585673_2587062_-\|melibiose:sodium-transporter-MelB	gnl\|CDD\|182453	PRK10429, PRK10429, melibiose:sodium transporter MelB.	0
NZ_CP013980.1\|WP_046465718.1\|2596844_2597828_+\|biotin-synthase-BioB	gnl\|CDD\|235755	PRK06256, PRK06256, biotin synthase; Validated.	2.5681e-180
NZ_CP013980.1\|WP_046465725.1\|2577944_2578943_+\|iron-ABC-transporter-permease	gnl\|CDD\|376439	pfam01032, FecCD, FecCD transport family. This is a sub-family of bacterial binding protein-dependent transport systems family. This Pfam entry contains the inner components of this multicomponent transport system.	1.25401e-72
NZ_CP013980.1\|WP_002511728.1\|2588907_2590407_-\|sodium:pantothenate-symporter	gnl\|CDD\|271369	cd11475, SLC5sbd_PutP, Na(+)/proline cotransporter PutP and related proteins; solute binding domain. Escherichia coli PutP catalyzes the Na+-coupled uptake of proline with a stoichiometry of 1:1. The putP gene is part of the put operon; this operon in addition encodes a proline dehydrogenase, allowing the use of proline as a source of nitrogen and/or carbon. This subfamily also includes the Bacillus subtilis Na+/proline cotransporter (OpuE) which has an osmoprotective instead of catabolic role. Expression of the opuE gene is under osmotic control and different sigma factors contribute to its regulation; it is also a putative CcpA-activated gene. This subfamily belongs to the solute carrier 5 (SLC5) transporter family.	1.01685e-64
NZ_CP013980.1\|WP_046465719.1\|2594022_2595027_+\|NADP-dependent-oxidoreductase	gnl\|CDD\|176190	cd05288, PGDH, Prostaglandin dehydrogenases. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.	1.74409e-166
NZ_CP013980.1\|WP_046465720.1\|2592222_2592987_+\|hypothetical-protein	gnl\|CDD\|370779	pfam10014, 2OG-Fe_Oxy_2, 2OG-Fe dioxygenase. This family contains 2-oxoglutarate (2OG) and Fe-dependent dioxygenases. It includes L-isoleucine dioxygenase (IDO).	8.16312e-30
NZ_CP013980.1\|WP_002511722.1\|2587248_2588073_+\|AraC-family-transcriptional-regulator	gnl\|CDD\|367029	pfam02311, AraC_binding, AraC-like ligand binding domain. This family represents the arabinose-binding and dimerization domain of the bacterial gene regulatory protein AraC. The domain is found in conjunction with the helix-turn-helix (HTH) DNA-binding motif pfam00165. This domain is distantly related to the Cupin domain pfam00190.	2.89701e-29
NZ_CP013980.1\|WP_046465726.1\|2576952_2577948_+\|iron-ABC-transporter-permease	gnl\|CDD\|376439	pfam01032, FecCD, FecCD transport family. This is a sub-family of bacterial binding protein-dependent transport systems family. This Pfam entry contains the inner components of this multicomponent transport system.	6.11973e-77

>NZ_CP013980.1|WP_002511722.1|2587248_2588073_+|AraC-family-transcriptional-regulator
MQVLWKKFSKKLIDANLVECGIEVGVPNVGYNYTVFQTSVIHIVTHGEGIFKYNGRSFNLKKGDMFLLEKGMEVEYKPSFSKPWTYYWVGISGKQILDYLARSYIVDDHVIKGKDTSEIKKTIQNICNLSKTIASSNSHDILIMQHIYQLVYMLQEQFPKNFSVNVDIVNEDIQKAVEFINSNYHKNISVVDVAQYVNVTRSHLFKLFKKNLNCSPKAYLTYIRMYHASQLLIHTNNMICEVSSKVGYKDPLLFSKNFTKHFEISASEYRNNFS
>NZ_CP013980.1|WP_046465722.1|2585673_2587062_-|melibiose:sodium-transporter-MelB
MDRYLTGKQKLAFGFGAIGKDAIFNIVGLFLMFYITDIVGLSPAFVGVMLFVARIWDAINDPIMGMIVDNTRNNFGKFKTWLVIGTLANAIVTVLLFTNLDLSQTSMYIYISIMYISWGMTYTMMDIPYWSWLPNLTHNPREREEISVIPRFFASLAAFIVGTFGLFFIHKLGDVFGSGSDSVGIFVFAVICSIVFIFTIGVTVFKVPEDHEMEKQIGIKVNFKDIGRILFKNKELLAIMGVLLTFNLCLQTLNGSIIYYFKYVVNAEHLFSIFNSMILCEMLGLLLLPRFIKWVGRTRAFNTSITLIITGLVIILISGFVAPQSTILVIIGAGMLRVGSGFMIGITTVSLADVIDYGEVKFGQRNESVITSTNTFLTKASQAVAALIVGIGLSVLGYTPNEAQSEATVNGLRIMIIVAPLVFVSLTAFLYHKAFHLKGDFLNDIEKTLRYKRQREHRENIK
>NZ_CP013980.1|WP_046465723.1|2582682_2585658_-|beta-galactosidase
MLEEQFHKNMEIQHVNLMPRRAFYIPYQRGEADYRLETRYNTKNVTLLNGDWHFEYFNSLEACLNQPQQIKKDILPVPSVWNLYGYDQIQYLNTQYPIPFDPPYVPKYNPCGRYTRSFELSSYDMQSDYHLNFEGVASAFYVWINDQFVGYSQISHAISEFDISKFVRDGENTVQVLVLKYSDGTYFEDQDMFRHSGIFRDVYILKRAQSRVDDFKIETHLNDDLNKATIDVNLARKQGLDQVELHLYNPYGELVSSTQASEQYSFTVNKPQLWSAESPVLYTLAITTTQEVITQKIGIREVKIRDNQFYINGQSIKLRGTNHHDSDPKTGYTINEAQFMRDLELMKQGNFNAVRTAHYPKSPLFYELTDQYGFYVMSEADLETHGVVRLYGEENTEHFNIITDDPKYQTAIIERIEASIIPLKNYSSIVSWSMGNESGFGVNIVEGLARAKELDATRPLHYEGTLHRDKSKDYDLSNVEMISRMYPSPEEIETTYLKNPNLDKPFILCEYAHAMGNSPGDLNDYQKLVEAYDSFIGGFVWEWCDHGIQTGVKDGKPIFRYGGDFGERLHDGNFCVDGIVSPDRIPHEGYYEFKHEHRPLKVIAQDGYHLILRNQLDFTHIEDYLSVEATATYLNGKRQTFEVPFTKFTPHTTQNIDLSDYININELSDVMLHYKLECADKLRPAHFELGYDQIVYQRQSMTYQNTKPSSIAYKDDIHTIHVSIDDWIYTFNKIDASLKTVAHEGVIVMNQKTENNLWRAPTDNDINAKQEWAYAGYKDITTRVHDYRIVENKSDVSLIFDIALVNEAVPPVLSGTLTWIIQNDGTLTVNYDLAKDTLAPFLPRFGLAMTLPSNYEQVEYYGNGPYSSYQDKGVATYLDYFETSVTDNVSNDIKPQESGSHNQTTFVKVSNGRNAMVVTSGDTFSFNTTHYSLNQLTHTSHKDELEVEDYTYLYIDYAQSGIGSNSCGPELNEAYRLNDTQLKFNFKLNFE
>NZ_CP013980.1|WP_002506331.1|2581491_2582379_-|LysR-family-transcriptional-regulator
MELRHMQYFVEVVKQKSMTKAAAKLFITQPTISNTIRLLEKELEVTLFNRYKNQIYLTDAGEAFFFQCKEMLKMYENIPNELSNLLELKSGHLKIGIPTIINIRRLIKLISQFHDSYPNVTFQLFENGSKKIENDIYYGDLDMGITVLPTNHKIFSTFTFLEEKLKLVVHKDHPLSDKDTIDIEDLEHQEFILFNSDFYLNDKIKNTCRNYGFNPNIIFETTQWSFIEEMLINNMGICILPEGILDLLDKDLKAISINEPSMKWELAIIWRKDIIVDSLTKNWIKFIQENYLLHH
>NZ_CP013980.1|WP_002511719.1|2580854_2581382_-|acyl-CoA-thioesterase
MENYKYPSDSKIVSTDQVLINDLNNYNTLFGGVLMKKIDNNATLSARRHARVKECVTASTDSVEFLHPITQSDSVCIESSVVYTGEKSMEIFCKVISEDMITAERKIAAIAFLTFVALDENKKSIKVPKITAQTQDEKTLYMYGEERAKMRKARRAQSKTLIKSLNLCKPWELEK
>NZ_CP013980.1|WP_002506333.1|2580474_2580849_-|hypothetical-protein
MVNEMDELTQCKLDLKTLREESPQLYEQLEYIASLTRQLSIHYKYLGLLMFSNNNEAIQNNRPILIRDSVLELYEREVEKVKQNNEFKFVNEMILKFQFVAYSQIFLIVLGAEPSFVFNNTIIK
>NZ_CP013980.1|WP_002511717.1|2580247_2580436_-|hypothetical-protein
MSISECRYLCIKQDKSFEKGKLYWLFPTEVSTLDEKYFYVSNDGQLLTEAYKSSNFIKSVSH
>NZ_CP013980.1|WP_046465724.1|2579253_2579490_-|hypothetical-protein
MRLQKSLKFSLIFFVIITFLVIIFRPTDTGLIQIMTSNFIQAVGLVIKELVTTLSISLLPSIIIFLVFYFYILKPSSE
>NZ_CP013980.1|WP_046465725.1|2577944_2578943_+|iron-ABC-transporter-permease
MNETVHKKDTKRLVIAVLILIVFSILSLMLGSTFISLNSILSYIIDPISSPDQFTIEVLRLPRIILAIVAGAALGVSGLILQNVLKNPIASPDIIGVTGGATFGAVAFIAFLGDISVHWLPAFSLTGAAVVMMILISFQKKGNIQPTTLVIIGIALQTLFMALVNGTLVLTKQLAASKAYTWLVGSLSGATFESSLILGLFIVCTLPLLIIVLPRMKVSVMHDNVATGLGVKVNQTRLIQMVITTILAGAAISFVGNIGFVGLISPHIAKALIKGNYLKRLLMSAIFGALSIVIADLIGRTVFLPKEVPAGVFIAAFGAPFFIYLLLTVKKL
>NZ_CP013980.1|WP_046465726.1|2576952_2577948_+|iron-ABC-transporter-permease
MLLKPRYKLMLSGLCLIVVTILSLIIGNTLVSLSQLVQALFHFNSNNDIHILLAESRASRTLIALLTGAAFSVSGLLMQVLTRNPIASPGLFGVNSGAVFFVICGLTFFKVQSFEALITISFIGAIIVTVLVITLGMFKQAQFSPKRVILAGAAISALFGAFTQGILIMNQSNLQSFLFWLSGSVAMRNVWEVPWVIPIIIIFLLIAFAMSSHINILMTSDEIASSLGQKVKLTKMVMVLTISALAGISVALAGSIMFIGLIVPNISKKLMPANYKYLIPFTAVSGAILMTLSDILARTIIKPLELPIGVITAVIGSITLIYIIRKGIQRI
>NZ_CP013980.1|WP_002506312.1|2588390_2588780_-|tautomerase-family-protein
MPLIKLDMIKGREKEEIKSILDITYNVMLDAFQAPKGDKYLIVNQHEDYEMEILDTGLGIERTDDVIVFTIVSRPRTKEQKTTFYKNLVNTLHEKVGIRKEDIMISLVENTDENWSFFNGEAQFLTGDL
>NZ_CP013980.1|WP_002511728.1|2588907_2590407_-|sodium:pantothenate-symporter
MDEISLYTWIGFILFMIVMVIVGYISSRKMKNIADFATGGGNIGPRVLGLSFAATYLSAATFLGYPGWSYEWGLNNLWLFLAMFIGGPTGVLMVAKKVRKLNTTQKSLSLPDWLGDFYDSDIMRVGTGIILLFNIFYIASQFVAGARIFEYLLGMSYFSGLVFIAVIVVLYVYVGGALADIYTDAIQVVIMAIAGLAVFISGIVIFWKGSITSTFAGIANNLSNQNENLVKVFNPESVHFNSFAMVLGAIVIQWAFASAPHLFNKILGLKNEKDLGKMINTYIMVTGLCLLVLFGGIFARVALGDSVETSDLALLDYIIWAFPAVIVALFGVVILAAAMSTTDGLFVSISTVFANDIFLKFLVKRKIINISDEKANRIAFQISKISVPIVGLLSFLLVLQPPKHMSDIMWIGISGIAAGTLGPILHAIYAKKKAPARAAELSMFVGLGSYLVIYFGGIIPSTMSAGAVATFIGIATITIAAFFIKPKDNQKYNVEEGNN
>NZ_CP013980.1|WP_002511729.1|2590432_2591812_-|LLM-class-flavin-dependent-oxidoreductase
MPKKQIHFNGFVQNSPSPHSSGLWKHDKDQGAHHNQLDYWINIAQTLEKGKFDSIFIADVLGTYSVYNQSSDAAIKHAVQLPAHDPIPIISAMAAVTKHIGFAPTISTTYAQPYSLARQLSTLDHLTNGRLGWNVVTSYLESEAINLGLKERLPKDLRYNRADEFLQVVYKLWEDSWEDGSVVNDKDTDTYADPDKVHEINHEGEFFSVPGPHIVEPSPQRTPVLFQAGASEKGKTFAAKHAEAVFTKHTSVESLKSYVDDIHTRAEQHGRSKEDILVFPMVLPIIGETEEEAYQKYEALTEHISYEGSASLLSGHTGIDFSEYDPDQYIEDIETEAMQGNLNMYTKDPHHKWTLREAVKNHGLGNGTAKFIGTKEQVADKFEAWAVEGGAAGFNIAQSYSPGTFEEFVDHVIPELQKRGLYRTEYEGTTLRENMFGKDQKTIKENHPAKNKSAANTLI
>NZ_CP013980.1|WP_046465720.1|2592222_2592987_+|hypothetical-protein
MNKLQKDGYSRYDLMKSLNYEGIEQDYNEILAYFADLPEDDYASNLNRYRRYSRAIVLPGTEDVFWLPTIERNGVDYSAYFQGKFNPEHSGSYREFHSIDENIRSNKLLNDIIIANYHETFWNEEDKILPIHVGVHFVKLYVENDGDKAVSSPNCLHQDGEPFTFAHLIERKNIVGGTNAIAVPEAAGNNPEDTDENNIIEVFEMENPLESYGVYDPNVSHYVSPVEKGSEQGTGLRSVILIDYQQTVVADVDE
>NZ_CP013980.1|WP_002511730.1|2593059_2593419_-|DUF1304-domain-containing-protein
MSIVTVILVLLVAIEFIYIMILQTIKTTSLRTSKIFNIKQEELKKPNLKVLMKNQGVYNGLLGVMLLYALFFSHNPRELITCILIYIILVAIYGTITSQKSIILKQGGLPIIALISLLF
>NZ_CP013980.1|WP_002506307.1|2593491_2593833_-|MerR-family-transcriptional-regulator
MEKFYIDQVASICDISKSKLRFYEKKEILKFIERDTNNKRLYSKDDIEMIKFIKCLSNLNMSLKEIKKNTGMLYDNEIDIKTILEVHLGVLNNQKEVLNKRIGVIEGELLQIT
>NZ_CP013980.1|WP_046465719.1|2594022_2595027_+|NADP-dependent-oxidoreductase
MQNEQIVLNERPEGLPKDDTFKYEAIQTAEPSTGEVQLKSIYISVDPYMRGRMNDSKSYVKPYEIGKPIDGHVLAKVIKSEVEYLEEGDYVTGVLPWQRIITTDANQVTKIPSTEVPLHLYLSILGMPGMTAYTGLLEIGKPKAGETVVVSAASGAVGSVVGQIAKIKGAKVVGIAGGKEKIQYLTDTLGFDAAVDYKGDDFEAQLAASVPNGIDVYYENVGGKLSDEVFKHLNTFARVPVCGAISTYNNTQTEMGPRIQETLVKSQALMQGFVVGQFAELFKEASEQLAKWVAEDKIKSQVTIDEGFDQLPNAFRKLFSGENFGKQVVKISEE
>NZ_CP013980.1|WP_021339369.1|2595155_2596574_-|sodium:solute-symporter-family-protein
MFNSSEQLILGFTIIIYFIFLLLMSVYIQRKIKTYDDYNMASRTVTLWPLILTFVSTGVGGATLLGYMENGYTLGMGQQWIHITMMAAVIVLAFFLLKRIRLLGEKHNMVTIGDYTALRYGESARIPTVISFLFAYCAMTGMQFVAIASILNLTIGLNMTAGIIIGCILLTIKTYLGGLKAVIWQDVVQGTMLTIGIIVLFFVVIFYSGNWSEIKANASSQNQNDMLNFLNITPNEILIYLLTLAFYQFIRQDVWQRIWAAKDLKTARNGYGLSMIIAVALGAMTVFIGVYAKFGLNLDIAETPLVYYNVIQNVFPFPLVLVMIIILLAAVISSADSFFIAGSSSIANDIIKPNVKSDNQNKMLLYSKLSVLIVAVISLVLALMIPGLVDLMVTGTAMSVSGLLAPVMFGLFWKKPTKLAGNIAMWSGLGSAVIWQILGHPFGLHPILIGLPLSIIMLLLVTFFGKKDYATV
>NZ_CP013980.1|WP_046465718.1|2596844_2597828_+|biotin-synthase-BioB
MKLAENILQGKILTKDTLLNVYEDSNVDTLDLLNEAYILRKQYYGKKVKLNMILNAKSGICPEDCGYCGQSRDMKQKQRYSLVPEEQIVSGAKVAHENSIGTYCIVMSGRGPSNKEIDHISRTVEEIKSNHPQLKVCACLGLTNDEQAKKLKAAGVDRYNHNINTSENYHETVVTTHTYKDRTNTLEIMKANNISPCSGVICGMGESNQDIIDMAFALKEIDADSIPINFLHPIQGTKFGEMDELTPMKCLRLIALFRLVNPSKEIRIAGGREVNLRSLQPLALKAANSIFVGDYLITGGQPNQLDYKMIQDLGFEIDFGYNELQEE
>NZ_CP013980.1|WP_046465717.1|2598047_2598857_-|hypothetical-protein
MNNFKKIFTSSTKTANKKVITVYVILRLIVMFSLINELIFIQRWDVIFTLVLTLVLFTIPQLTERLLKIEIPNLLEFIIILFIFSSTILGELGDFYSYFRLWDTMLHSINGFLAAGIGFSLVFLLNKNVRGINLNPLFLAIVTFCFSMTIGVMWEFFEYTVDQGMGMDMQKDRVVQKVNSAALANEHNTVHHIDNIEKTIIESKDESGNHVENVVDGGYLDVGIHDTMKDLFVNLLGAATFSVLSYSYAKYDRKKYKFVKNFILKREKL

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

576796 : 583271

Salmonella_phage(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_021339420.1\|576796_577861_+	glycosyltransferase family 2 protein	A8CG95	Salmonella_phage	3.4e-57	40.3
WP_002508325.1\|578341_578593_-	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA
WP_002508324.1\|578657_579251_-	hypothetical protein	NA	NA	NA	NA
WP_002508323.1\|579489_580206_-	7-carboxy-7-deazaguanine synthase QueE	A0A1U9WRB6	Streptococcus_virus	4.7e-50	43.4
WP_021339423.1\|580198_580624_-	6-carboxytetrahydropterin synthase QueD	S4U060	uncultured_phage	1.4e-06	24.4
WP_021339424.1\|580625_581297_-	7-cyano-7-deazaguanine synthase QueC	A0A2H4J8Q7	uncultured_Caudovirales_phage	5.7e-66	56.5
WP_065367340.1\|581551_582145_+	aminodeoxychorismate/anthranilate synthase component II	A0A0P0IKJ1	Acinetobacter_phage	2.6e-38	45.6
WP_065367341.1\|582128_583271_+	anthranilate synthase component I family protein	S4VNU7	Pandoravirus	5.9e-23	33.3

DBSCAN-SWA_2

591795 : 612020

uncultured_Caudovirales_phage(35.71%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002508312.1\|591795_593574_+	DNA helicase RecQ	M1PGQ0	Moumouvirus	2.0e-78	37.4
WP_065367344.1\|593864_594830_+	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	2.8e-26	33.3
WP_065367345.1\|594826_596341_+	ABC transporter permease/substrate-binding protein	NA	NA	NA	NA
WP_064783084.1\|596533_597589_+	histidinol-phosphate transaminase	A0A1X6WGT4	Pacmanvirus	6.1e-22	27.2
WP_002508308.1\|597859_598408_+	5'-3'-deoxyribonucleotidase	A0A0A0PKY7	Bacillus_phage	6.5e-28	37.2
WP_021339436.1\|598609_599557_-	diacylglycerol kinase family lipid kinase	A0A1V0SBJ0	Catovirus	3.3e-11	23.9
WP_064783082.1\|599739_601248_-	peptide MFS transporter	A0A0P0IY73	Acinetobacter_phage	3.8e-70	34.4
WP_021339439.1\|601505_603020_-	peptide MFS transporter	A0A0P0IY73	Acinetobacter_phage	2.7e-71	35.6
WP_002508304.1\|603311_603812_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	E7DN65	Pneumococcus_phage	5.4e-53	72.3
WP_021339440.1\|603826_604714_-	DMT family transporter	NA	NA	NA	NA
WP_002512096.1\|605424_605823_+	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	A0A2H4J545	uncultured_Caudovirales_phage	1.6e-52	74.2
WP_065367346.1\|605785_607891_+	class 1b ribonucleoside-diphosphate reductase subunit alpha	A0A2H4J2N6	uncultured_Caudovirales_phage	0.0e+00	90.3
WP_002508300.1\|608007_608976_+	class 1b ribonucleoside-diphosphate reductase subunit beta	A0A2H4J4P3	uncultured_Caudovirales_phage	1.9e-171	90.1
WP_021339443.1\|609305_610274_+	ABC transporter permease	A0A2H4IY97	uncultured_Caudovirales_phage	2.0e-136	78.9
WP_021339444.1\|610263_611223_+	iron chelate uptake ABC transporter family permease subunit	A0A2H4J116	uncultured_Caudovirales_phage	2.7e-05	52.0
WP_021339445.1\|611219_612020_+	ATP-binding cassette domain-containing protein	W5SAS9	Pithovirus	1.3e-13	29.8

DBSCAN-SWA_3

858992 : 867468

Synechococcus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_031265876.1\|858992_859475_+	5-(carboxyamino)imidazole ribonucleotide mutase	A0A2P0VNU7	Tetraselmis_virus	2.9e-19	42.0
WP_021338636.1\|859461_860595_+	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA
WP_021338637.1\|860594_861296_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	G8EYA2	Synechococcus_phage	3.4e-45	40.8
WP_002508031.1\|861298_861559_+	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA
WP_046465174.1\|861558_862230_+	phosphoribosylformylglycinamidine synthase I	NA	NA	NA	NA
WP_046465175.1\|862222_864412_+	phosphoribosylformylglycinamidine synthase subunit PurL	A6N228	Microbacterium_phage	1.7e-135	39.0
WP_021338640.1\|864390_865878_+	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	3.6e-44	31.3
WP_046465176.1\|865870_866899_+	phosphoribosylformylglycinamidine cyclo-ligase	Q58MH8	Prochlorococcus_phage	7.6e-62	40.7
WP_002508026.1\|866901_867468_+	phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	3.6e-29	39.8

DBSCAN-SWA_4

1306138 : 1314694

Bacillus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002507558.1\|1306138_1307518_-	ATP-dependent DNA helicase RecQ	M1PGQ0	Moumouvirus	1.6e-59	34.1
WP_021339221.1\|1307504_1308470_-	hypothetical protein	NA	NA	NA	NA
WP_002507556.1\|1308579_1308828_+	ferredoxin	A0A127AYY7	Bacillus_phage	1.3e-15	49.3
WP_002507555.1\|1309109_1309655_-	ECF transporter S component	NA	NA	NA	NA
WP_037539570.1\|1310079_1311855_-	HAMP domain-containing protein	A0A1V0SGX0	Hokovirus	1.2e-22	26.2
WP_021339222.1\|1311838_1312564_-	response regulator transcription factor	W8CYM9	Bacillus_phage	3.2e-46	41.3
WP_002507552.1\|1312697_1313435_-	rRNA pseudouridine synthase	NA	NA	NA	NA
WP_031265982.1\|1313427_1313970_-	SMC-Scp complex subunit ScpB	A0A1B1IVT7	uncultured_Mediterranean_phage	1.4e-09	30.2
WP_002507550.1\|1313959_1314694_-	segregation protein A	A0A1B1IVW1	uncultured_Mediterranean_phage	1.2e-08	23.5

DBSCAN-SWA_5

1443154 : 1452393

uncultured_Mediterranean_phage(50.0%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_021339119.1\|1443154_1443673_-	adenine phosphoribosyltransferase	A0A1V0SKE5	Klosneuvirus	3.0e-30	47.6
WP_065367456.1\|1443685_1445965_-	single-stranded-DNA-specific exonuclease RecJ	A7KV88	Bacillus_phage	2.1e-67	29.1
WP_031265961.1\|1446284_1448561_-	protein translocase subunit SecDF	A0A1B1IVP7	uncultured_Mediterranean_phage	2.5e-28	33.2
WP_002507416.1\|1448924_1449185_-	preprotein translocase subunit YajC	A0A1B1IVR5	uncultured_Mediterranean_phage	1.6e-05	42.9
WP_002507415.1\|1449203_1450343_-\|tRNA	tRNA guanosine(34) transglycosylase Tgt	A0A1B1IVQ4	uncultured_Mediterranean_phage	2.7e-84	44.4
WP_065367457.1\|1450363_1451389_-\|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	NA	NA	NA	NA
WP_021339116.1\|1451391_1452393_-	Holliday junction branch migration DNA helicase RuvB	B3GAM6	uncultured_virus	9.9e-06	29.9

DBSCAN-SWA_6

1578251 : 1585730

Staphylococcus_phage(100.0%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002507302.1\|1578251_1579511_+	NAD(P)/FAD-dependent oxidoreductase	A0A2H4PQX1	Staphylococcus_phage	4.5e-40	77.9
WP_002507301.1\|1579797_1580109_-	rhodanese-like domain-containing protein	A0A2H4PQR9	Staphylococcus_phage	1.6e-34	69.9
WP_021339042.1\|1580127_1582542_-\|tRNA	leucine--tRNA ligase	A0A2H4PQS0	Staphylococcus_phage	0.0e+00	85.8
WP_002507299.1\|1582939_1584109_-	MFS transporter	A0A2H4PQR6	Staphylococcus_phage	2.4e-165	76.1
WP_021339041.1\|1584219_1585173_+	TIGR01212 family radical SAM protein	A0A2H4PQV5	Staphylococcus_phage	2.1e-66	82.6
WP_021339040.1\|1585169_1585730_+	methyltransferase domain-containing protein	A0A2H4PQV0	Staphylococcus_phage	8.6e-68	63.4

DBSCAN-SWA_7

1588881 : 1612408

Staphylococcus_phage(95.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002507293.1\|1588881_1589883_+	proline dehydrogenase	A0A2H4PQT6	Staphylococcus_phage	4.7e-125	67.3
WP_002507292.1\|1589996_1590455_-	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	8.6e-58	75.7
WP_021339036.1\|1590467_1591649_-	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	A0A2H4PQS2	Staphylococcus_phage	2.1e-164	70.5
WP_002507290.1\|1591659_1592292_-	riboflavin synthase	A0A2H4PQS5	Staphylococcus_phage	1.1e-71	63.8
WP_021339035.1\|1592298_1593342_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	A0A2H4PQS8	Staphylococcus_phage	6.2e-128	64.1
WP_021339034.1\|1593919_1595389_-	pyridine nucleotide-disulfide oxidoreductase	A0A2H4PQX2	Staphylococcus_phage	1.2e-12	67.3
WP_021339033.1\|1595566_1596493_+	osmoprotectant ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_002507286.1\|1597123_1597975_-	autolysin	A0A1W6JNR1	Staphylococcus_phage	5.7e-39	43.3
WP_002507285.1\|1598138_1598363_-	hypothetical protein	NA	NA	NA	NA
WP_065367463.1\|1598583_1599054_+	sigma-70 family RNA polymerase sigma factor	A0A2H4PQT5	Staphylococcus_phage	1.2e-27	47.3
WP_021339030.1\|1599066_1599489_+	hypothetical protein	NA	NA	NA	NA
WP_002507281.1\|1599499_1599949_-	hypothetical protein	A0A2H4PQT8	Staphylococcus_phage	5.2e-23	52.2
WP_021339029.1\|1600075_1600711_-	pentapeptide repeat-containing protein	NA	NA	NA	NA
WP_002507279.1\|1600907_1601621_-	transaldolase	H8ZNI7	Synechococcus_phage	5.0e-20	37.7
WP_002507278.1\|1601904_1602210_+	hypothetical protein	NA	NA	NA	NA
WP_021339028.1\|1602277_1602643_+	fluoride efflux transporter CrcB	A0A2H4PQR0	Staphylococcus_phage	5.1e-37	62.8
WP_021339027.1\|1602639_1602996_+	CrcB family protein	NA	NA	NA	NA
WP_002507275.1\|1603189_1604026_-	aldo/keto reductase	A0A2H4PQR8	Staphylococcus_phage	2.5e-111	68.2
WP_002507274.1\|1604219_1605128_-	NERD domain-containing protein	A0A2H4PQQ8	Staphylococcus_phage	1.3e-100	77.0
WP_002507273.1\|1605223_1606420_-	methionine adenosyltransferase	A0A2H4PQS6	Staphylococcus_phage	7.5e-194	86.1
WP_021339026.1\|1606808_1608398_+	phosphoenolpyruvate carboxykinase (ATP)	A0A2H4PQN1	Staphylococcus_phage	6.3e-257	81.1
WP_002507271.1\|1608451_1609222_-	S9 family peptidase	A0A2H4PQM6	Staphylococcus_phage	2.5e-97	69.4
WP_002507270.1\|1609229_1609706_-	nucleoside triphosphatase YtkD	A0A2H4PQM4	Staphylococcus_phage	1.8e-42	52.9
WP_002507269.1\|1609768_1610005_+	membrane protein insertion efficiency factor YidD	A0A2H4PQM5	Staphylococcus_phage	1.9e-29	79.2
WP_021339023.1\|1610001_1611006_-	o-succinylbenzoate synthase	A0A2H4PQM0	Staphylococcus_phage	2.9e-90	50.2
WP_021339022.1\|1611019_1612408_-	o-succinylbenzoate--CoA ligase	A0A2H4PQM9	Staphylococcus_phage	8.7e-170	63.2

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP013981

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CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP013980

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CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection