CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP016337	Kosakonia sacchari strain BO-1 chromosome, complete genome	2 crisprs	DEDDh,DinG,cas3,csa3,WYL	0	0	6	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP016337_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP016337_1

2536701-2537097

Orphan

Consensus_repeat	Method
CGTTCTTTCATAGAAAGCGGAGTGGACAGTCATTCATCTTGCCTGCACCAGAAAGCAAAAA	PILER-CR

3 spacers

The CRISPR arrays of NZ_CP016337_1

>merge|NZ_CP016337|1|2536701-2537097|PILER-CR
CGTTCTTTCATCGAAAGTGGAGTGGACAGTCATTCATCTTGCCTGCACCAGAAAGCAAAAATCCCGCCGAAGCGGGGTTTTACCTGAATAGTCGAAACTGGCCGGTAAGCCGCGTTCTTTCATCGAAAGCGGAGTGGACAGTCATTCATCTTGACTGCACCAGAAAGCAAAAACCCCGCCGAAGCGGGGTTTTACCTGAATAGTCGAAACGGACCGCTAAGCCGCGTTCTTTCATAGAAAGCGGAGTGAACAGTCATTCATCTTGCCTGCACCAGAAAGCAAAAACCCCGCCGAAGCGGGATTTTACCTGAATAGTCGAAACTGGCCGGTAAGCCCCGTTCTTTCATAGAAAGCGGAGTGGACAGTCATTCATCTTGCCTGCACCAGAAAGCAAAAA

>NZ_CP016337|1|1|2536701-2537097|PILER-CR
CGTTCTTTCATCGAAAGTGGAGTGGACAGTCATTCATCTTGCCTGCACCAGAAAGCAAAAA	TCCCGCCGAAGCGGGGTTTTACCTGAATAGTCGAAACTGGCCGGTAAGCCG
CGTTCTTTCATCGAAAGCGGAGTGGACAGTCATTCATCTTGACTGCACCAGAAAGCAAAAA	CCCCGCCGAAGCGGGGTTTTACCTGAATAGTCGAAACGGACCGCTAAGCCG
CGTTCTTTCATAGAAAGCGGAGTGAACAGTCATTCATCTTGCCTGCACCAGAAAGCAAAAA	CCCCGCCGAAGCGGGATTTTACCTGAATAGTCGAAACTGGCCGGTAAGCCC
CGTTCTTTCATAGAAAGCGGAGTGGACAGTCATTCATCTTGCCTGCACCAGAAAGCAAAAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP016337.1\|WP_083126934.1\|2535348_2535741_+\|nuclear-transport-factor-2-family-protein	unknown	unknown	gnl\|CDD\|378915
NZ_CP016337.1\|WP_017457400.1\|2529727_2530123_+\|membrane-protein	unknown	unknown	gnl\|CDD\|227681
NZ_CP016337.1\|WP_065369439.1\|2533589_2534291_+\|pirin-family-protein	unknown	unknown	gnl\|CDD\|224655
NZ_CP016337.1\|WP_065369443.1\|2542258_2543830_+\|galactarate-dehydratase	unknown	unknown	gnl\|CDD\|274491
NZ_CP016337.1\|WP_065369438.1\|2531096_2532083_+\|glutathione-S-transferase-family-protein	unknown	unknown	gnl\|CDD\|223512
NZ_CP016337.1\|WP_065369441.1\|2537534_2538680_-\|glycerate-2-kinase	unknown	unknown	gnl\|CDD\|182392
NZ_CP016337.1\|WP_017457384.1\|2543887_2544697_-\|DeoR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|182086
NZ_CP016337.1\|WP_065369437.1\|2530119_2530410_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|372871
NZ_CP016337.1\|WP_017457395.1\|2532587_2533484_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176122
NZ_CP016337.1\|WP_020455382.1\|2530628_2531021_+\|DoxX-family-protein	unknown	unknown	gnl\|CDD\|225168
NZ_CP016337.1\|WP_065370652.1\|2535720_2536473_-\|glutamine-amidotransferase	unknown	unknown	gnl\|CDD\|181635
NZ_CP016337.1\|WP_065369442.1\|2540501_2541836_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|273326
NZ_CP016337.1\|WP_017457380.1\|2548532_2549393_+\|tagatose-bisphosphate-aldolase-subunit-KbaY	unknown	unknown	gnl\|CDD\|183711
NZ_CP016337.1\|WP_017457382.1\|2546629_2547064_+\|PTS-sugar-transporter-subunit-IIA	unknown	unknown	gnl\|CDD\|225446
NZ_CP016337.1\|WP_017457387.1\|2539705_2540476_-\|2-dehydro-3-deoxyglucarate-aldolase	unknown	unknown	gnl\|CDD\|182547
NZ_CP016337.1\|WP_017457388.1\|2538783_2539674_-\|2-hydroxy-3-oxopropionate-reductase	unknown	unknown	gnl\|CDD\|183197
NZ_CP016337.1\|WP_017457396.1\|2532207_2532555_+\|DUF805-domain-containing-protein	unknown	unknown	gnl\|CDD\|377540
NZ_CP016337.1\|WP_017457381.1\|2547378_2548533_+\|SIS-domain-containing-protein	unknown	unknown	gnl\|CDD\|131862
NZ_CP016337.1\|WP_065369440.1\|2534541_2535258_-\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225117
NZ_CP016337.1\|WP_017457383.1\|2544944_2546240_+\|tagatose-bisphosphate-aldolase-subunit-KbaZ	unknown	unknown	gnl\|CDD\|185355

Protein	Function_ID	Function_description	E-value
NZ_CP016337.1\|WP_083126934.1\|2535348_2535741_+\|nuclear-transport-factor-2-family-protein	gnl\|CDD\|378915	pfam12680, SnoaL_2, SnoaL-like domain. This family contains a large number of proteins that share the SnoaL fold.	2.61745e-05
NZ_CP016337.1\|WP_017457400.1\|2529727_2530123_+\|membrane-protein	gnl\|CDD\|227681	COG5393, COG5393, Predicted membrane protein [Function unknown].	4.17973e-55
NZ_CP016337.1\|WP_065369439.1\|2533589_2534291_+\|pirin-family-protein	gnl\|CDD\|224655	COG1741, COG1741, Pirin-related protein [General function prediction only].	7.92477e-67
NZ_CP016337.1\|WP_065369443.1\|2542258_2543830_+\|galactarate-dehydratase	gnl\|CDD\|274491	TIGR03248, galactar-dH20, galactarate dehydratase. Galactarate dehydratase converts D-galactarate to 5-dehydro-4-deoxyglucarate which is subsequently acted on by GarL, tartronate semialdehyde reductase and glycerate kinase (GenProp0714).	0
NZ_CP016337.1\|WP_065369438.1\|2531096_2532083_+\|glutathione-S-transferase-family-protein	gnl\|CDD\|223512	COG0435, ECM4, Predicted glutathione S-transferase [Posttranslational modification, protein turnover, chaperones].	0
NZ_CP016337.1\|WP_065369441.1\|2537534_2538680_-\|glycerate-2-kinase	gnl\|CDD\|182392	PRK10342, PRK10342, glycerate kinase I; Provisional.	0
NZ_CP016337.1\|WP_017457384.1\|2543887_2544697_-\|DeoR-family-transcriptional-regulator	gnl\|CDD\|182086	PRK09802, PRK09802, DeoR family transcriptional regulator.	3.28521e-179
NZ_CP016337.1\|WP_065369437.1\|2530119_2530410_+\|hypothetical-protein	gnl\|CDD\|372871	pfam13997, YqjK, YqjK-like protein. The YqjK-like protein family includes the E. coli YqjK protein, which is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are approximately 100 amino acids in length. There is a single completely conserved residue R that may be functionally important.	8.272e-22
NZ_CP016337.1\|WP_017457395.1\|2532587_2533484_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|176122	cd08431, PBP2_HupR, The C-terminal substrate binding domain of LysR-type transcriptional regulator, HupR, which regulates expression of the heme uptake receptor HupA; contains the type 2 periplasmic binding fold. HupR, a member of the LysR family, activates hupA transcription under low-iron conditions in the presence of hemin. The expression of many iron-uptake genes, such as hupA, is regulated at the transcriptional level by iron and an iron-binding repressor protein called Fur (ferric uptake regulation). Under iron-abundant conditions with heme, the active Fur repressor protein represses transcription of the iron-uptake gene hupA, and prevents transcriptional activation via HupR. Under low-iron conditions with heme, the Fur repressor is inactive and transcription of the hupA is allowed. This substrate-binding domain shows significant homology to the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	1.03832e-51
NZ_CP016337.1\|WP_020455382.1\|2530628_2531021_+\|DoxX-family-protein	gnl\|CDD\|225168	COG2259, COG2259, Predicted membrane protein [Function unknown].	9.70638e-24
NZ_CP016337.1\|WP_065370652.1\|2535720_2536473_-\|glutamine-amidotransferase	gnl\|CDD\|181635	PRK09065, PRK09065, glutamine amidotransferase; Provisional.	1.11065e-113
NZ_CP016337.1\|WP_065369442.1\|2540501_2541836_-\|MFS-transporter	gnl\|CDD\|273326	TIGR00893, Probable_glucarate_transporter, D-galactonate transporter. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids].	3.07397e-136
NZ_CP016337.1\|WP_017457380.1\|2548532_2549393_+\|tagatose-bisphosphate-aldolase-subunit-KbaY	gnl\|CDD\|183711	PRK12738, kbaY, tagatose-bisphosphate aldolase subunit KbaY.	0
NZ_CP016337.1\|WP_017457382.1\|2546629_2547064_+\|PTS-sugar-transporter-subunit-IIA	gnl\|CDD\|225446	COG2893, ManX, Phosphotransferase system, mannose/fructose-specific component IIA [Carbohydrate transport and metabolism].	1.12297e-42
NZ_CP016337.1\|WP_017457387.1\|2539705_2540476_-\|2-dehydro-3-deoxyglucarate-aldolase	gnl\|CDD\|182547	PRK10558, PRK10558, alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional.	0
NZ_CP016337.1\|WP_017457388.1\|2538783_2539674_-\|2-hydroxy-3-oxopropionate-reductase	gnl\|CDD\|183197	PRK11559, garR, tartronate semialdehyde reductase; Provisional.	0
NZ_CP016337.1\|WP_017457396.1\|2532207_2532555_+\|DUF805-domain-containing-protein	gnl\|CDD\|377540	pfam05656, DUF805, Protein of unknown function (DUF805). This family consists of several bacterial proteins of unknown function.	1.74563e-27
NZ_CP016337.1\|WP_017457381.1\|2547378_2548533_+\|SIS-domain-containing-protein	gnl\|CDD\|131862	TIGR02815, agaS_fam, putative sugar isomerase, AgaS family. Some members of this protein family are found in regions associated with N-acetyl-galactosamine and galactosamine untilization and are suggested to be isomerases.	0
NZ_CP016337.1\|WP_065369440.1\|2534541_2535258_-\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|225117	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription].	1.09016e-20
NZ_CP016337.1\|WP_017457383.1\|2544944_2546240_+\|tagatose-bisphosphate-aldolase-subunit-KbaZ	gnl\|CDD\|185355	PRK15458, PRK15458, tagatose 6-phosphate aldolase subunit KbaZ; Provisional.	0

>NZ_CP016337.1|WP_065370652.1|2535720_2536473_-|glutamine-amidotransferase
MDQKSLIIIQMGDAPKPLRDAHGDVPHWFCRALGCAPEEVDVVRVFEGETLPAPDARRAAIITGSWAMVSDRLPWSEKTAEWIREAMAVEMSLFGVCYGHQLMSWALGGNVEYHPQGREAGTKTVYLNASALNDPLLSHLSESFPAHLTHRQTVTRLPEGASVLASSAHDNHQIVRYGPRAISVQFHPEMTPEIATDLLRLNRAHIEKEGTDADSLVASVLPAPGAAEILRRFVQDVIERNKTQLSHAAQ
>NZ_CP016337.1|WP_083126934.1|2535348_2535741_+|nuclear-transport-factor-2-family-protein
MMDITQRIALALQSVVCHPDHNEAKIREFFSPDYQQVVDGQLLDFTGFVEHMAKLKHLTHAIDVTVVAIAGQNNDVLTHHLVAVSKKDGTQAHIDVFAHFTLENGLITRCEELTRLVQGTAQDRSLGSVR
>NZ_CP016337.1|WP_065369440.1|2534541_2535258_-|helix-turn-helix-transcriptional-regulator
MLIVQSQRLTHQNKHATEWHQHATGQLFCIQRGMMIVKTEQAQWALTPATVGWFPAQMRHCAWSMGDVEGHSLQLNHEGAPAFAGVWPADPFMMLLMERITQCDPAREASLLAVMMEEIRVAPGAPLQLTLPRDRRAKRVAELLLSEPHHAANQAQLACCYGLSVRTLSRLFSEQTGLSFSQWRQQAKVLASMAHLLRGASVSETAERCGYDNVSAFIAAFKLRFGSTPGQFQARNRA
>NZ_CP016337.1|WP_065369439.1|2533589_2534291_+|pirin-family-protein
MITTRTAKQCGQADFGWLQARYTFSFGHYFDPKLLGYASLRVLNQEVLAPGASFQPRTYPKVDILNLILEGEAEYRDSEGNHVQAKAGEALLIATQPGISYSEHNLSKDKSLTRMQLWLDACPERENPPVQKMTVADVAQQLLASPDGSQGSLQLRQQVWLHHIELAKGEALQIQLHGPRAYLQSIHGTVHAVTHCEAKEALTCGDGAFIRDEANITLVADTPLRALLIDLPV
>NZ_CP016337.1|WP_017457395.1|2532587_2533484_-|LysR-family-transcriptional-regulator
MAKERALTLEALRVMDAIDRRGSFAAAADELGRVPSALSYTMQKLEEELDVVLFDRSGHRTKFTNVGRMLLERGRVLLEAADKLTTDAEALARGWETHLTLVTEALVPTVELFPLVDRLAAKANTQLSLITEVLAGAWERLEQGRADIVVAPDMHFRSSSEINSRKLYSVMNVYVAAPDHPIHQEAEPLSEVTRVKYRGVAVADTARERPVLTVQLLDKQPRLTVSTIEDKRQALLSGLGVATMPYPLVEQDIAEGRLRVVSPEYTSQVDIIMAWRRDSMGEAKAWCLREIPKLFAGK
>NZ_CP016337.1|WP_017457396.1|2532207_2532555_+|DUF805-domain-containing-protein
MDWYFRVLSNYATFHGRAHRREFWMFTLVNLILFGVLYVVDRIIGWHLLSQIYALLVLVPNLAVQVRRLHDTNRSWRWLLLLLFPVIGWLMLLAFYSQRGTPVENPFGPEPKAFP
>NZ_CP016337.1|WP_065369438.1|2531096_2532083_+|glutathione-S-transferase-family-protein
MGQLIDGVWHDNWYDTKSTGGRFQRSVSAFRNWLTADGTPGPSGEGGFAAEKDRYHLYVSLACPWAHRTLILRTLKGLEPFISVSVVNPLMLENGWTFDDDFPAATGDTLYQHEFLYQLYLHADPQYTGRVTVPVLWDKKNHTIVSNESAEIIRMFNTAFDGLGAKAGDYYPPELRSQIDELNGWIYDNVNNGVYKAGFATSQQAYDEAVVNVFNALERLEQILGQHRYLTGDRLTEADIRLWTTLVRFDPVYVTHFKCDKHRISDYLNLHGFLRDIYQMPGIAETVDFAHIRNHYYRSHKTINPTGIISIGPWQDLDEPHGRDLRFP
>NZ_CP016337.1|WP_020455382.1|2530628_2531021_+|DoxX-family-protein
MKKLEDVGFLVARILMPILFITAGWGKITGYAGTQQYMEAMGVPGFFLPLTILLEFGGGLAILFGFLTRTTALFTAGFTLLTAFIFHSNFAEGVNSLMFMKNLTIAGGYLLLGITGPGAISIDRVLNKKW
>NZ_CP016337.1|WP_065369437.1|2530119_2530410_+|hypothetical-protein
MSGKAERLKRKARLLSEIQQQRLDLTASRREWLEATGAYDRGWNTLLSLRSWALVGSSAMAIWSVRHPNMLVRWAKRGLGAWSLWRLVKSTLNATP
>NZ_CP016337.1|WP_017457400.1|2529727_2530123_+|membrane-protein
MTDLRNAQGPGKSVLGIGQRIVTILVEMVETRLRLAVVELEEEKANLFQLLLMVGLTMLFAAFGLMSLMVLIIWAIDPQYRLNAMIATTVVLLVLALIGGIWTLRKARASTLLRHTRQELANDRALLEEDK
>NZ_CP016337.1|WP_065369441.1|2537534_2538680_-|glycerate-2-kinase
MKIVIAPDSYKESLSATEVAQAIEKGFREIFPDAQYVSVPVADGGEGTVEAMIAATNGTVHTARVTDPLGKHVEACWGMSGDGKTAFIEMAAASGLALVPPELRNPLITTSRGTGELILHALEQGATTIIIGIGGSATNDGGAGMVQALGAKLTDANGMEIGYGGGSLISLNGIDISGLDPRLQHCTLRVACDVTNPLIGEQGASRIFGPQKGATEAMIVELDRNLSHFADVIKKSLRVDVKNVPGSGAAGGMGAALMAFLGAELRSGIEIVTQALNLEEHIHDCTLVVTGEGRIDSQSIHGKVPVGVAHVAKKYHKPVIGIAGSLTSDVGVVHQYGIDAVFSVLSSIGTLEEAFRGAFDNIYRASRNIAATLQVGMLTEG
>NZ_CP016337.1|WP_017457388.1|2538783_2539674_-|2-hydroxy-3-oxopropionate-reductase
MTMKVGFIGLGIMGKPMSKNLIKAGYSLVVVDRNQDAVAEVIAAGAEAVTSAKAVAEQCDVIITMLPNSPHVKEVALGEGGIIEGAKPGTVLIDMSSIAPLASREISDALKAKGIDMLDAPVSGGEPKAIDGTLSVMVGGDKAIFDKYYDLLKAMAGSVVHTGDIGAGNVTKLANQVIVALNIAAMSEALTLATKAGVNPDLVYQAIRGGLAGSTVLDAKAPMVMDRNFKPGFRIDLHIKDLSNALDTSHGVGAQLPLTAAVMEMMQALRADGLGNADHSALACYYEKLAKIEVTR
>NZ_CP016337.1|WP_017457387.1|2539705_2540476_-|2-dehydro-3-deoxyglucarate-aldolase
MNNDIFPNKFKAALAAQQIQIGCWSALGSHISTEVLGLAGFDWLLLDGEHAPNDVLTFVPQLMALKGSVSAPVVRVPTNDPVVIKRLLDIGFYNFLIPFVETEEEAVNAVAATRYPPEGIRGVSVSHRANMFGTVPDYFRQSNANISILVQIESQSGVDNLDAILATDGVDGVFVGPSDLAATLGYIGNAAHPEVQRTIQHIFARAKAHNKPSGILAPVEADARRYLEWGATVVAVGSDLGVFRSATQKLADTFKK
>NZ_CP016337.1|WP_065369442.1|2540501_2541836_-|MFS-transporter
MTVEHAVETKRGLPTRYLILLIIFIVTAVNYADRATLSIAGTEVAKELQLDSVSMGYIFSAFGWAYLLMQIPGGWLLDRFGSKKVYTYSLFFWSLFTFLQGFVDVFPIAWAGISMFFMRFMLGFSEAPSFPANARIVAAWFPAKERGTASAIFNSAQYFSLALFSPLLGWLTFAWGWEHVFTVMGAIGFVLTFAWVKFVHNPTDHPRMSREELEYIEQNGAVVDMDHKKTNDSKNAGPKMDYIKQLLCNRMMLGVFFGQYFLNTITWFFLTWFPIYLVQEKGMSILKVGFVASIPALCGFAGGVLGGFFSDYLIKRGSSLTVARKFPIVVGMLLASSIILCNYTDNTALVVALMALAFFGKGFGALGWPVISDVAPKEIVGLCGGVFNVFGNVASIVTPLVIGYMVKELHSFNGALVFVGCSALMMMVCYLFVVGDIKRMELKK
>NZ_CP016337.1|WP_065369443.1|2542258_2543830_+|galactarate-dehydratase
MSDIEIRQQPPGAFYIKVHDTDNVAIIVDDNGLKAGTRFPDGLELIEHIPQGHKMALVDIPQHGEIVRYGEVIGYAVRDIARGSWIDESMVELPKAPPLNTLPLATKVPEPLPPLEGYTFEGYRNADGSVGTKNLLGITTSVHCVAGVVDYVVKIIERDLLPKYPNVDGVVGLNHLYGCGVAINAPAAVIPIRTIHNLALNPNFGGEVMVIGLGCEKLQPERLLQGTEDVQAIPVDSASIVRLQDEHHVGFRSMVDDILQVAERHLVKLNQRKRETCPASELVVGMQCGGSDAFSGVTANPAVGFASDLIIRCGGTVMFSEVTEVRDAIHLLTPRAINEEVGKRLLEEMAWYDNYLDMGKTDRSANPSPGNKKGGLANVVEKALGSIAKSGKSAISEVLSPGQRPTKRGLIYAATPASDFVCGTQQVSSGITLQVFTTGRGTPYGLVAVPVIKMATRTELANRWYDLMDINAGTIATGEETIEDVGWKLFHFILDVASGRKKTFSDQWGLHNQLAVFNPAPVT
>NZ_CP016337.1|WP_017457384.1|2543887_2544697_-|DeoR-family-transcriptional-regulator
MASISSSPEKRTIGTSERREQIIQRLRQQGSVQVNDLSTLFGVSTVTIRNDLAFLEKQGIAVRAYGGALICDGNAPATEPSVEDKSALNTGLKRGIALAAADMIKPGHRVILDSGTTTYEIARMMKQHQDVIVMTNGMNVANALLDAEGVELLMTGGHLRRQSQSFYGDQAEQSLQNYHFDILFLGVDAIDLERGVSTHNEDEARLNRRMCEVAERIIVVTDSSKFNRLSLHKIIDTQRIDMIITDEGIPVESLHGLQKSGIDVLLVKQ
>NZ_CP016337.1|WP_017457383.1|2544944_2546240_+|tagatose-bisphosphate-aldolase-subunit-KbaZ
MKHLTALIKHHKEGDKKGIYAVCSAHPLVLEAAIRFTAAHHHPLLIEATSNQVDQFGGYTGMTPAQFHAFVCQLADKLNFPRAQLILGGDHLGPNRWQTLPASDAMSHAEELIKHYVTAGFKKIHLDCSMSCADDPTPLTDEIVAARAARLAQVAEAACIEQSGKSDLVYVIGTEVPVPGGAHETLTELAVTSPDAARATLQAHRIAFEHLGLSNIWPRIIALVVQPGVEFDNSHVVDYQPQKASALSKMVEDQPTLVFEAHSTDYQTPQALRQLVHDHFAILKVGPALTFALREALFALAAIEEELLPARACSDLRHVLENVMLDRPEYWQSHYHGDNHARRLARDYSYSDRVRYYWPDSQVDESYARLVRNLADQAIPLPLISQYLPLQYARVREHRLSATPNALIIDHIQDVLRQYHAACQGVSSDNH
>NZ_CP016337.1|WP_017457382.1|2546629_2547064_+|PTS-sugar-transporter-subunit-IIA
MLGIILCGHGGFASGMARAMTQILGEQSQFIAIDFPETSTTALLTEQLEEAVNTLSGNEGVVFLTDLLGGTPFRVASTLAMQQPNREVITGTNLQLLLEMALERDELSCEAFRAQALECGHRGLTSLADELGRCRDEQQIEEGI
>NZ_CP016337.1|WP_017457381.1|2547378_2548533_+|SIS-domain-containing-protein
MSEMLSGRTTTSTWTEQEIRQQPACWIASLENIDRQHDEIDAFLQPVLSIPNLKIILTGAGTSAFIGDIIGPWLARHTGKNITAVPTTDLVTNPVDYLQETQPTLLVSFGRSGNSPESVAAVNLADQLVRQCYHLAITCNEAGALYQNAEASRHAKALLMPAETHDRGFAMTSSITTMMASCLALFAPDVISTARFRDVAARCQQIIHSLGDFSAGVFGDLPFKRIVYLGSGGLQGVARESALKVLELTAGKLVAFYDSPTGFRHGPKSLIDNETLVVVFMSSHPYTRLYDRDLLAELHRENQALRIVSISASPEHALPADAQITLPPAREFLDVEQVFCFLMYAQVFALTQSIKAGITPDTPSQSGTVNRVVQGVIIHPWQEA
>NZ_CP016337.1|WP_017457380.1|2548532_2549393_+|tagatose-bisphosphate-aldolase-subunit-KbaY
MSIISTKYLLQDAQAKGYAIPAFNIHNAETIQAILEVCQEMRSPVILAGTPGTYKHIAIEEIYALCDAYSASYHMPVALHLDHHESLDDIRRKVNIGVRSAMIDGSHLPFDDNVRLVKSVVDFCHSQDCSVEAELGRLGGMEDDMSVDEESAFLTSPQDARRFVELTGVDSLAVAIGTAHGLYTKPPKLDFQRLAAIRNVVDVPLVLHGASDVPDEFVRRAIELGICKVNVATELKIAFAAAVRKWFDENPDGNDPRYYMRVGMDAMKDVVRSKVTVCGSADKLEK

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Crispr_ID: NZ_CP016337_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP016337_2

3452093-3452179

Orphan

Consensus_repeat	Method
TTTCTCTCCCCGTTTGGGGAGAGAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP016337_2

>merge|NZ_CP016337|2|3452093-3452179|CRISPRCasFinder
TTTCTCTCCCCGTTTGGGGAGAGAACTGCCGCAAGGCCTGCCTGTTTTCACCATCAGCCATATTTCTCTCCCCGTTTGGGGGAGAGA

>NZ_CP016337|2|1|3452093-3452179|CRISPRCasFinder
TTTCTCTCCCCGTTTGGGGAGAGAA	CTGCCGCAAGGCCTGCCTGTTTTCACCATCAGCCATA
TTTCTCTCCCCGTTTGGGGGAGAGA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP016337.1\|WP_065369842.1\|3449251_3449989_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|368817
NZ_CP016337.1\|WP_065369840.1\|3446221_3447871_+\|glucose-6-phosphate-isomerase	unknown	unknown	gnl\|CDD\|234679
NZ_CP016337.1\|WP_017459426.1\|3453307_3453718_+\|phosphate-starvation-inducible-protein-PsiE	unknown	unknown	gnl\|CDD\|235075
NZ_CP016337.1\|WP_017459419.1\|3444191_3445541_-\|lysine-sensitive-aspartokinase-3	unknown	unknown	gnl\|CDD\|236376
NZ_CP016337.1\|WP_065369843.1\|3449991_3452088_+\|YjbH-domain-containing-protein	unknown	unknown	gnl\|CDD\|377600
NZ_CP016337.1\|WP_065369841.1\|3448616_3449252_+\|YjbF-family-lipoprotein	unknown	unknown	gnl\|CDD\|378557
NZ_CP016337.1\|WP_065369838.1\|3441943_3443170_+\|RtcB-family-protein	unknown	unknown	gnl\|CDD\|376465
NZ_CP016337.1\|WP_065369846.1\|3460848_3461793_+\|maltose-operon-protein-MalM	unknown	unknown	gnl\|CDD\|236716
NZ_CP016337.1\|WP_139164777.1\|3452188_3452653_-\|N-acetyltransferase	unknown	unknown	gnl\|CDD\|100048
NZ_CP016337.1\|WP_017459429.1\|3456568_3457759_-\|maltose/maltodextrin-ABC-transporter-substrate-binding-protein-MalE	unknown	unknown	gnl\|CDD\|236533
NZ_CP016337.1\|WP_017459433.1\|3461973_3462471_+\|chorismate-lyase	unknown	unknown	gnl\|CDD\|236949
NZ_CP016337.1\|WP_017459431.1\|3459414_3460740_+\|maltoporin	unknown	unknown	gnl\|CDD\|236481
NZ_CP016337.1\|WP_065369839.1\|3443184_3443970_+\|nucleotidyltransferase-domain-containing-protein	unknown	unknown	gnl\|CDD\|313370
NZ_CP016337.1\|WP_017459427.1\|3453929_3454820_-\|maltose-ABC-transporter-permease-MalG	unknown	unknown	gnl\|CDD\|182891
NZ_CP016337.1\|WP_065369845.1\|3458129_3459239_+\|maltose/maltodextrin-ABC-transporter-ATP-binding-protein-MalK	unknown	unknown	gnl\|CDD\|182893
NZ_CP016337.1\|WP_065369844.1\|3454834_3456379_-\|maltose-ABC-transporter-permease-MalF	unknown	unknown	gnl\|CDD\|236816
NZ_CP016337.1\|WP_065369837.1\|3440811_3441954_+\|slipin-family-protein	unknown	unknown	gnl\|CDD\|259816
NZ_CP016337.1\|WP_007372406.1\|3448309_3448552_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP016337.1\|WP_065369836.1\|3438754_3440341_-\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|226997
NZ_CP016337.1\|WP_017459425.1\|3452659_3453169_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|366181

Protein	Function_ID	Function_description	E-value
NZ_CP016337.1\|WP_065369842.1\|3449251_3449989_+\|hypothetical-protein	gnl\|CDD\|368817	pfam06251, Caps_synth_GfcC, Capsule biosynthesis GfcC. Many bacteria are covered in a layer of surface-associated polysaccharide called the capsule. These capsules can be divided into four groups depending upon the organisation of genes responsible for capsule assembly, the assembly pathway and regulation. This family plays a role in group 4 capsule biosynthesis. These proteins have a beta-grasp fold. Two beta-grasp domains, D2 and D3, are arranged in tandem. There is a C-terminal amphipathic helix which packs against D3. A helical hairpin insert in D2 binds to D3 and constrains its position, a conserved arginine residue at the end of this hairpin is essential for structural integrity.	5.33042e-88
NZ_CP016337.1\|WP_065369837.1\|3440811_3441954_+\|slipin-family-protein	gnl\|CDD\|259816	cd13438, SPFH_eoslipins_u2, Uncharacterized prokaryotic subgroup of the stomatin-like proteins (slipins) family; belonging to the SPFH (stomatin, prohibitin, flotillin, and HflK/C) superfamily. This model summarizes a subgroup of the stomatin-like protein family (SLPs or slipins) that is found in bacteria. The conserved domain common to the SPFH superfamily has also been referred to as the Band 7 domain. Individual proteins of the SPFH superfamily may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Bacterial SLPs remain uncharacterized.	4.8941e-102
NZ_CP016337.1\|WP_017459426.1\|3453307_3453718_+\|phosphate-starvation-inducible-protein-PsiE	gnl\|CDD\|235075	PRK02833, PRK02833, phosphate-starvation-inducible protein PsiE; Provisional.	2.7613e-53
NZ_CP016337.1\|WP_017459419.1\|3444191_3445541_-\|lysine-sensitive-aspartokinase-3	gnl\|CDD\|236376	PRK09084, PRK09084, aspartate kinase III; Validated.	0
NZ_CP016337.1\|WP_065369843.1\|3449991_3452088_+\|YjbH-domain-containing-protein	gnl\|CDD\|377600	pfam06082, YjbH, Exopolysaccharide biosynthesis protein YbjH. YjbH is a family of Gram-negative beta-barrel outer-membrane lipoproteins that act as putative porins. YbjH is one of four gene-products expressed from an operon, yjbEFGH, which is regulated by the Rcs phosphorelay in a RcsA-dependent manner, similar to that of other exopolysaccharide biosynthetic pathways. It is highly possible that the yjbEFGH operon encodes a system involved in EPS secretion since none of the products is predicted to have enzymic activity, the products are all secreted and YbjH and F are predicted to be beta-barrel lipoproteins similar to porins. It may be that the operon products play some role in biofilm formation and/or matrix production.	0
NZ_CP016337.1\|WP_065369841.1\|3448616_3449252_+\|YjbF-family-lipoprotein	gnl\|CDD\|378557	pfam11102, YjbF, Group 4 capsule polysaccharide lipoprotein gfcB, YjbF. This family includes lipoprotein GfcB (YmcC), involved in group 4 capsule polysaccharide formation. YjbF is a family of Gram-negative bacterial outer-membrane lipoproteins, predicted to be a beta-barrel and possibly a porin that is one of four gene-products expressed from an operon, yjbEFGH, which is regulated by the Rcs phosphorelay in a RcsA-dependent manner, similar to that of other exopolysaccharide biosynthetic pathways. It is highly possible that the yjbEFGH operon encodes a system involved in EPS secretion since none of the products is predicted to have enzymic activity, the products are all secreted and YbjF and H are predicted to be beta-barrel lipoproteins similar to porins. It may be that the operon products play some role in biofilm formation and/or matrix production.	6.04873e-64
NZ_CP016337.1\|WP_065369838.1\|3441943_3443170_+\|RtcB-family-protein	gnl\|CDD\|376465	pfam01139, RtcB, tRNA-splicing ligase RtcB. This family of RNA ligases (EC:6.5.1.3) join 2',3'-cyclic phosphate and 5'-OH ends. They catalyze the splicing of tRNA and may also participate in tRNA repair and recovery from stress-induced RNA damage.	0
NZ_CP016337.1\|WP_065369846.1\|3460848_3461793_+\|maltose-operon-protein-MalM	gnl\|CDD\|236716	PRK10564, PRK10564, maltose operon protein MalM.	2.62769e-167
NZ_CP016337.1\|WP_017459429.1\|3456568_3457759_-\|maltose/maltodextrin-ABC-transporter-substrate-binding-protein-MalE	gnl\|CDD\|236533	PRK09474, malE, maltose/maltodextrin ABC transporter substrate-binding protein MalE.	0
NZ_CP016337.1\|WP_017459433.1\|3461973_3462471_+\|chorismate-lyase	gnl\|CDD\|236949	PRK11655, ubiC, chorismate pyruvate lyase; Provisional.	4.89393e-100
NZ_CP016337.1\|WP_017459431.1\|3459414_3460740_+\|maltoporin	gnl\|CDD\|236481	PRK09360, lamB, maltoporin LamB.	0
NZ_CP016337.1\|WP_065369839.1\|3443184_3443970_+\|nucleotidyltransferase-domain-containing-protein	gnl\|CDD\|313370	pfam10127, Nuc-transf, Predicted nucleotidyltransferase. Members of this family of bacterial proteins catalyze the transfer of nucleotide residues from nucleoside diphosphates or triphosphates into dimer or polymer forms.	1.01644e-111
NZ_CP016337.1\|WP_017459427.1\|3453929_3454820_-\|maltose-ABC-transporter-permease-MalG	gnl\|CDD\|182891	PRK10998, malG, maltose ABC transporter permease MalG.	0
NZ_CP016337.1\|WP_065369845.1\|3458129_3459239_+\|maltose/maltodextrin-ABC-transporter-ATP-binding-protein-MalK	gnl\|CDD\|182893	PRK11000, PRK11000, maltose/maltodextrin ABC transporter ATP-binding protein MalK.	0
NZ_CP016337.1\|WP_065369844.1\|3454834_3456379_-\|maltose-ABC-transporter-permease-MalF	gnl\|CDD\|236816	PRK10999, malF, maltose ABC transporter permease MalF.	0
NZ_CP016337.1\|WP_065369840.1\|3446221_3447871_+\|glucose-6-phosphate-isomerase	gnl\|CDD\|234679	PRK00179, pgi, glucose-6-phosphate isomerase; Reviewed.	0
NZ_CP016337.1\|WP_139164777.1\|3452188_3452653_-\|N-acetyltransferase	gnl\|CDD\|100048	cd03358, LbH_WxcM_N_like, WcxM-like, Left-handed parallel beta-Helix (LbH) N-terminal domain: This group is composed of Xanthomonas campestris WcxM and proteins with similarity to the WcxM N-terminal domain. WcxM is thought to be bifunctional, catalyzing both the isomerization and transacetylation reactions of keto-hexoses. It contains an N-terminal LbH domain responsible for the transacetylation function and a C-terminal isomerase domain. The LbH domain contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), typical of enzymes with acyltransferase activity.	8.84509e-41
NZ_CP016337.1\|WP_065369836.1\|3438754_3440341_-\|AAA-family-ATPase	gnl\|CDD\|226997	COG4650, RtcR, Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms].	0
NZ_CP016337.1\|WP_017459425.1\|3452659_3453169_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	2.16351e-14

>NZ_CP016337.1|WP_065369843.1|3449991_3452088_+|YjbH-domain-containing-protein
MKKSFVISLLALGISAACHAESYPDPIGPSQSDFGGVGLLQTPTARMAPEGELSFNYRDNHQYRYYSGSVQLFPWLETTLRYTDVRTRKYSTVEAFSGNQSYKDKAFDVKLRLWQEGYWLPEVSVGARDIGGTGLFDGEYLVASKAWGPFDFSLGIGWGYLGTSGNIKNPLCSYDEKYCTRDTRYKAAGSTDTSQMFRGPTALFGGVEYQTPWNPLRLKLEYEGNNYQQDFAGKLPQRSKVNVGAIYRVTDWADINLSYERGNTWMFGFTLRNNFNNLRPSYIDNARPKYQPQPQDAILQHSVVANQLTLLKYNAGLTDPQIQVKGDTLYVTGEQVKYRNTQEGVERANRIVMNDLPDGIRTIRVTENRLNMPVVTTETDVASLKRHLEGEPLGQDTELVQKRETPIVPDKPEQGWYIDKSSFDFHIDPVLNQSFGGPEAFYMYQLGVMATADWWLTDHLLTTGSLFGNLTNNYDKFNYTNPPRDSALPRVRTRVREYVQNDVYINNMQANYFQYLGNNFYGQVYAGYLETMYGGAGAELLWRPVDSHWAFGIDGNYVKQRDWRSAQDMMKFTDYSVKTGHFTAYWTPWFAENVLVKASVGQYLAGDKGVTLDVSKHFDSGIVVGAYATKTNVSAAQYGEGDFTKGVYISVPLDLFSTGPTRSRAGIGWTPLTRDGGQMLGRKFELYNMTNDKTVNFQ
>NZ_CP016337.1|WP_065369842.1|3449251_3449989_+|hypothetical-protein
MKKRALLPLLASLASPLAFAVGTVDVYTEGDSKPKTLTNAEHLVDLVGQPRLADSWWPGAVVSERQATVAEQARHQALLARLSALAADESGNSAAAINALRQQLQAMKVTGRQIVELDPDYLRTHRLANRPLQGQYTLWVGKQPTTITVVGLISSPGKKVFTPERDVVSYLDEMSLLSGAERSYAWVIYPNGKTQKVPVGYWNRRHVEPMPGSVIFVGFAPGLWSNEYDELNADILQSLTHRIPE
>NZ_CP016337.1|WP_065369841.1|3448616_3449252_+|YjbF-family-lipoprotein
MKRPGIILICLLLQACSGPIKGLGNSLWNSVFGTPGVQLTDEEILNMPYASQYMQLNNGPQLFVVLAFAENGQQKWVTQDQSTIVTQNYRIVKTHLPGDNLLDVNNLAADPLAKPNQVVDGASWTRLMGWTEHKQVRYATARSVFHWNGTDTVKLASDVTAVRILDEEVTTDQKRWRNRYWVDEQGVIRQSEQYLGADWFPVKTTLIKAAK
>NZ_CP016337.1|WP_007372406.1|3448309_3448552_+|hypothetical-protein
MKKVLYGIFAISALAATSAFAAPVQIGEAAGSAATSVSAGSSAATSVSTVGSAVGVALAATGGGDGSNTGTTTTTTTSTQ
>NZ_CP016337.1|WP_065369840.1|3446221_3447871_+|glucose-6-phosphate-isomerase
MKNINPTQTSAWQALQKHYADMKDVTIADLFAKEGDRFSKFSATFDDLMLVDFSKNRITQETLDKLLALAKETDLAGAIKSMFSGEKINRTEDRAVLHVALRNRSNTPIVVDGKDVMPEVNAVLEKMKAFSEAIISGSWKGYTGKPITDVVNIGIGGSDLGPFMVTEALRPYKNHLNMHFVSNVDGTHIAEVLKKVNPETTLFLVASKTFTTQETMTNAHSARDWFLKTAGDNKHVAKHFAALSTNAKAVGEFGIDTANMFEFWDWVGGRYSLWSAIGLSIILSVGYDNFVELLSGAHAMDKHFSTTELDKNLPVLLALIGIWYNNFFGAETEAILPYDQYMHRFAAYFQQGNMESNGKYVDRNGNAVDYQTGPIIWGEPGTNGQHAFYQLIHQGTKMVPCDFIAPAITHNALSDHHQKLLSNFFAQTEALAFGKSREVVEQEYRDQGKDPATLNHVVPFKVFEGNRPTNSILLREITPFSLGALTALYEHKIFTQGAILNIFTFDQWGVELGKQLANRILPELGDDKSISSHDSSTNGLINRYKSWRG
>NZ_CP016337.1|WP_017459419.1|3444191_3445541_-|lysine-sensitive-aspartokinase-3
MTSFVVAKFGGTSVADFDAMNRSADVVLSDTSVRLVVLSASAGVTNLLVALAEGLEASERFVKLDAIRKIQFDILERLANPAVIREEIERLLENITTLAEAASLATSTALTDELVSHGELMSTLLFVEVLRERSVQAQWFDVRKVMRTSDRFGRAEPDVAALAELAGQQLAPRLNEGLVITQGFIGSEAKGRTTTLGRGGSDYTAALLGEALHASRVDIWTDVPGIYTTDPRVVPAAKRIDEIAFEEAAEMATFGAKVLHPATLLPAVRSDIPVFVGSSRDPKAGGTLVCNNTSNPPLFRALALRRKQTLLTLHSLNMLHSRGFLAEVFGILARHNISVDLITTSEVSVALTLDTTGSTSTGDTLLTQALLTELSSLCRVEVEEDLALVAIIGNDLSKACGVGKEVFGVLDPFNIRMICYGASSHNLCFLVPGKEAEQVVQKLHHNLFE
>NZ_CP016337.1|WP_065369839.1|3443184_3443970_+|nucleotidyltransferase-domain-containing-protein
MEPLGVDVAMRGRVRQVLHDVEQTYGVKVLYACESGSRGWGFASPDSDYDVRFLYVHKPDWYLRVEPQRDVIELPIDDELDVCGWEWCKALGLLKSANPALIEWLDSPIVYQQDDATLAALRVQVPHWFSPVRARWHYYSMAKKNFRGYLQGEEVRLKKYFYVLRPLLAVRWIEAGKGMPPMRFATLLAGSCLDAPLRAEIDELLALKQRAGEAQYGARRPLLHAFIGDELARGEIADALPESRSGKVSDLDALLYQTVMA
>NZ_CP016337.1|WP_065369838.1|3441943_3443170_+|RtcB-family-protein
MQHNDYQLLVQEHSAPVKMWTHGVPVEPEAREQLLNTAKMPFIFKHLAVMPDVHLGKGSTIGSVIPTKGAIIPAAVGVDIGCGMIAVRTSLLAADLPDNLGGLRSAIEQAVPHGRSVNRSKRDKGAWENPPQEVDSHWALLAPRFKRLTDKYPRLLQTNNYQHLGTLGTGNHFIEVCLDEQQRVWVMLHSGSRGVGNAIGNVFITLAQQDMQQHIANLPDRNLAYFQEGSKHYNDYLEAVEWAQDFARHNREVMMSHVLAALSRIVTKPFITRQEAVNCHHNYVQKETHFGEEVLVTRKGAVSAQKGQMGIIPGSMGAKSFIVRGRGNEESFCSCSHGAGRTMSRTAAKKRFTVEDHIRATAHVECRKDSEVIDEIPMAYKDIDAVMAAQESLVEVVHTLRQVVCVKG
>NZ_CP016337.1|WP_065369837.1|3440811_3441954_+|slipin-family-protein
MTNKITIRKGQLGLLAKEGDYIQVLETGEHRLPWFNKPDVLVVNTDGSEVAAGLAEYLRRFQPEWVERYCLVADMSDNEAGALYLNGMLLEILPPSTRRLYWQADDALKLVRMDTRDVRVPTEILNAVAQPKRGVAVKGRDAILAVQVPAWHAGVLKVDGVTQALLPAGLSGYWKVNHLVEAEVVDLRLQVLEVSGQEILTKDKVTLRLNLAANWRYTDVLSAFAQLSKPLDHLYRELQFALREAVGTRTLDELLEDKQVIDELVSVQVANRMAAFGIEVASLGVKDIILPGEMKTILSRLVEAEKSAQANVIRRREETAATRSLLNTAKVMESNPVALRLKELETLERVAERIDKISVFGGLDQVLHGLVNIKGSHDAA
>NZ_CP016337.1|WP_065369836.1|3438754_3440341_-|AAA-family-ATPase
MKRRVVIGVLGTVLDKRGKRQNRFRKWRPTVGLCQQPDLTVDRLELLHQPRDEGLAQQTAEDIALVSPHTEVRKHAVTINDPWDFEEVYAAFLDFATHYPFDTENEEYLVHITTGTHVAQICWFLLTEARYLPASLLQTGPAEKGAADEAIAAGVCSVIDLDLSRYATLTSRFQREQQQSVSFLKSGIDTRNATFNRLIEQIERVALRSTAPILLTGPTGAGKSFLAKRIFQLRQSRHLVQGRLVAVNCATLRGDNAMSTLFGHVKGAFTGAQQARTGLLREADGGVLFLDEIAELGLDEQAMLLKAIEEKTFFPFGSDKEVHSDFQLIAGTHRNMQQWVAEGRFREDLFARINMWTFALPGLAERREDIAPNIEYELQRFSQQQQTQIRFDKGARERYLAFACSPHAAWRGNFRELSTSIARMATLAEQGRINDALVEEEVQRLAHHWRGESALPDLPVDISTLDLFDQRQLETVIAVCRRSQTLSEAGRELFAISRQKKANPNDADRLRKYLSRFGLSWESVRGAT
>NZ_CP016337.1|WP_139164777.1|3452188_3452653_-|N-acetyltransferase
MMTSASLRQTAVRNVTCGDNVVIYEPANLYDCTLADDVFVGPFVEIQGHTQVGKGSKIQSHSFICEYVTIGERCFIGHGVMFANDMFRDGKPDPDSNNWGRIVIGNDVSIGSGATILAVTITDGCVIGAGSVVTKSISEKGVYAGNPARLLRRL
>NZ_CP016337.1|WP_017459425.1|3452659_3453169_-|GNAT-family-N-acetyltransferase
MLIVRKAEIADAALLSEMGYASYRHHFAPLWREPAELEAFLSQEYSPVVIEQSLQSEAGGWFIAQNTAPVGFAKVSWHSAVDEHGPVGTLLHKLYLLPGETGKGYGERLLAEIERLAQQRGERFIWLEVLDANPNAQRFYLRQGFTHLKDTTFSTASQQSTLHILGKSL
>NZ_CP016337.1|WP_017459426.1|3453307_3453718_+|phosphate-starvation-inducible-protein-PsiE
MTSLTRPRVEFISTILQTVLNLGLLSLGLILIVFLGKETLHLADVLFAPVQTSKYELVEGLVVYFLYFEFIALIVKYFQSGFHFPLRYFIYIGITAIVRLIIVDHQSPMDVLIYSAAILLLVITLWLCNSQRLRRE
>NZ_CP016337.1|WP_017459427.1|3453929_3454820_-|maltose-ABC-transporter-permease-MalG
MAMVQAKSQKLRLFITHLLLLVFIAAIMFPLLMVVAISLREGNFATGSLIPENISWEHWRLALGFSVEHADGRVTPPPFPVLLWLWNSVKIAVITAVGIVALSTTSAYAFARMRFRGKATLLKGMLIFQMFPAVLSLVALYALFDRLGQYVPFIGLNTHGGVIFAYMGGIALHVWTIKGYFETIDGSLEEAASLDGATPWQAFRLVLLPLSVPILAVVFILSFIAAITEVPVASLLLRDVNSYTLAVGMQQYLNPQNYLWGDFAAAAVLSAIPITVVFLLAQRWLVNGLTAGGVKG
>NZ_CP016337.1|WP_065369844.1|3454834_3456379_-|maltose-ABC-transporter-permease-MalF
MDVRRKRHWWQSPQLAWAAITVVGLLVAYLVVMMYAQGEYLFAITTLVLSSAGLYIFANRKAYAWRYVYPGVAGMGLFVLFPLICTIAIAFTNYSSTNQLTQERAQQVLLDRSYQAGKAYNFGLYPEGDAWRLALTDGDSGKNYVSDAFKPGGEQQLTLKEADALPAGERANLRIITQNRQALNQLTALLPDGSKVAMSSLRQFSGTRPLYQLEQDGTLLNNQSGAKYRPNNEIGYFQVINTDGSWGSEKLSPGYTVTIGWDNFTRVFTDEGIQKPFIEIFIWTVVFSVLTVVLTVAVGMVLACVVQWESLKGKAIYRVLLILPYAVPSFISILIFKGLFNQSFGEINMMLSALFGIKPAWFSDPTTARSMIVIVNTWLGYPYMMILCMGLLKAIPDDLYEASAMDGAGPLQNFFRITFPLLIKPLTPLMIASFAFNFNNFVLIQLLTNGGPDRIGTTTPAGYTDLLVSYTYRIAFEGGGGQDFGLAAAIATLIFLLVGALAIVNLKATRMKFD
>NZ_CP016337.1|WP_017459429.1|3456568_3457759_-|maltose/maltodextrin-ABC-transporter-substrate-binding-protein-MalE
MKIKTGARILALSAVATMMFSASALAKIEEGKLVIWINGDKGYNGLAEVGKKFEKDTGIKVTVEHPDKLEEKFPQVAATGDGPDIIFWAHDRFGGYAQSGLLAEVTPDKAFQDKLFPFTWDAVRYNGKLIAYPIAVESLSLIYNKDLVPNPPKTWEEIPALDKQLKAKGKSALMFNLQEPYFTWPLIAADGGYAFKFENGKYDVKDVGVDNAGAKAGLGFLVKLIKDKHMNADTDYSIAEAAFNKGETAMTINGPWAWANIDKSKINYGVALLPTFKGKPSKPFVGVLSAGINAASPNKELAKEFLENYLLTDQGLADVNKDKPLGAVALKSYQDQLAKDPRIAATMDNAKTGEIMPNIPQMAAFWYATRTAVINAVSDRQTVDAALKDAQGRITK
>NZ_CP016337.1|WP_065369845.1|3458129_3459239_+|maltose/maltodextrin-ABC-transporter-ATP-binding-protein-MalK
MASVQLRNVTKAWGDVVVSKDISLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLLIGDTRMNEVPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEMIKSRVTQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPRVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPADRFVAGFIGSPKMNFLPVKVTATAIEQVQVELPNRQRVWLPVDSANVQVGANMSLGIRPEHLLPSDIADVTLEGEVQVVEQLGHETQIHIQIPAIRQNLVYRQTDVVLVEEGATFAIGLPPERCHLFREDGSACRRLHKEPGV
>NZ_CP016337.1|WP_017459431.1|3459414_3460740_+|maltoporin
MITLRKLPLALAIAAGVLSAQAGAVDFKGYARSGIGWTGSGGEQQCFQATGADAKYRLGNECETYAEIKLGQEVWKEADKSFYFDSNIAYKTAQLNDWENDNVPAVREFNVVGKNLIDSLPGANIWAGKRFYQRHDVHMIDFYYWDISGPGAGIENIDVGIGKLSLAATRSSELGGSSAFGDRDSTTGLRTYNHAVPNDVFDVRLAQLATNPNGVLELGVDYGHTNIPDDYYLEPGASKDGWMFTAEHTQSMMKGYNKFVVQYATDAMISQGKGQARGGAVDNDGHLIRVLDHGAINLAEKWDLMYVGMYQDTDRDNKRGNTWYTVGVRPMYKWTPIMSTLMEVGYDNVKSQQTGDRNSQYKITLAQQWQAGDSIWSRPAIRVFATYAKWDEKWGYVKTDADGNTSSLAASNGATTPFGFGTNSRGNDDEWTFGAQMEIWW
>NZ_CP016337.1|WP_065369846.1|3460848_3461793_+|maltose-operon-protein-MalM
MKMKKSLVALCLSAGLLAAAPAVSLAAVNIVPQDISAAPSIPTSTLQQLHWTPVSPSQTLSSDISAAGQTLNTGDITGPVMAYSVPANIGELNITLTSKVNNESVYAPNVLVLDQNFTPAAFFPSSFFAYQEPGVMSDNRLEGTMKLTPALGQQKLYLLVFTTQKDLQKTTQMVDPAKAYAKGNGNAVPDIPDPIARHGVTGSLALKASTSSSSSILVGPLFGSSGPASVTVGNTAAPAYNTQPAPAAAPAAAPAPVAKSEPMLNDTESYFNQAIKQAAAKGDIDKALKLLNEAERLGSKSARATFISSVKGKG
>NZ_CP016337.1|WP_017459433.1|3461973_3462471_+|chorismate-lyase
MSHPALTQLRALRYVDAIPALEPQLLEWLLLEDSMTKRFEQQGKTVSVTLIREGFVTVDEIAEERDSLPKEDRYWLREIILCADGEPWLAGRTVVPESTLSGPELALQTLGKTPLGRYLFTSSTLTRDFIEIGRHEQLWGRRSRLRLGGKPLMLTELFLPASPLY

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

196905 : 225989

Escherichia_phage(25.71%)

terminase,integrase

attL 187770:187783|attR 212797:212810

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
187770:187783	attL	NA	NA	NA	NA
WP_017456948.1\|196905_197568_-	exodeoxyribonuclease X	Q6UAU3	Klebsiella_phage	1.9e-05	38.5
WP_017456949.1\|197579_197810_-	DNA polymerase III subunit theta	H9C187	Pectobacterium_phage	1.0e-14	61.8
WP_065368198.1\|197947_198322_+	CopC domain-containing protein YobA	NA	NA	NA	NA
WP_017456951.1\|198325_199195_+	copper homeostasis membrane protein CopD	NA	NA	NA	NA
WP_065370595.1\|199213_199552_+	YebY family protein	NA	NA	NA	NA
WP_065368199.1\|199889_200975_-\|integrase	tyrosine-type recombinase/integrase	A0A2H4IYC8	uncultured_Caudovirales_phage	2.1e-147	68.1
WP_006622866.1\|200943_201216_-	excisionase	A0A2H4J5E1	uncultured_Caudovirales_phage	6.7e-26	58.9
WP_065368200.1\|201711_201933_-	TraR/DksA family transcriptional regulator	A0A0N7C211	Escherichia_phage	1.8e-13	50.0
WP_065368201.1\|201929_202535_-	hypothetical protein	NA	NA	NA	NA
WP_065368202.1\|202531_202756_-	hypothetical protein	NA	NA	NA	NA
WP_065368203.1\|202755_203421_-	DNA methyltransferase	G8C7S6	Escherichia_phage	4.1e-101	80.9
WP_065368204.1\|203578_204010_-	regulator	G8C7S8	Escherichia_phage	1.2e-45	65.7
WP_065368205.1\|204006_204687_-	YqaJ viral recombinase family protein	M9NZE1	Enterobacteria_phage	3.3e-122	92.0
WP_156773063.1\|204688_204976_-	hypothetical protein	NA	NA	NA	NA
WP_065368206.1\|204972_205743_-	phage recombination protein Bet	A0A0M4RD39	Salmonella_phage	6.2e-133	89.8
WP_065368207.1\|205761_206046_-	host nuclease inhibitor GamL	G8C7T1	Escherichia_phage	2.9e-27	57.4
WP_065368208.1\|206053_206992_-	hypothetical protein	A0A077KCC0	Edwardsiella_phage	2.9e-36	71.9
WP_065368209.1\|207065_207263_-	DUF1482 family protein	NA	NA	NA	NA
WP_156773109.1\|207262_207433_-	host cell division inhibitory peptide Kil	NA	NA	NA	NA
WP_065368211.1\|207551_208568_-	hypothetical protein	A0A0U3TGV3	Pseudomonas_phage	6.6e-42	61.9
WP_065368212.1\|208724_209084_-	hypothetical protein	A0A2I6PHW0	Pseudomonas_phage	5.8e-09	42.1
WP_032677016.1\|209416_210121_-	helix-turn-helix transcriptional regulator	Q76H56	Enterobacteria_phage	2.1e-103	79.1
WP_006622888.1\|210232_210460_+	helix-turn-helix domain-containing protein	Q76H55	Enterobacteria_phage	2.0e-23	70.4
WP_065368213.1\|210500_210722_+	transcriptional regulator	NA	NA	NA	NA
WP_065368214.1\|211058_211877_+	DNA-binding protein	A0A2H4J902	uncultured_Caudovirales_phage	7.8e-94	68.8
WP_065368215.1\|211936_212908_+	replication protein	K7PGZ0	Enterobacteria_phage	5.5e-54	70.3
212797:212810	attR	NA	NA	NA	NA
WP_065368216.1\|212904_213591_+	phage replication protein	G8C7U6	Escherichia_phage	2.4e-80	62.9
WP_065368217.1\|213592_213886_+	protein ren	A0A1I9LJP5	Stx_converting_phage	5.0e-27	63.4
WP_065368218.1\|213882_214341_+	hypothetical protein	A0A1R3Y5S0	Salmonella_virus	2.5e-20	58.3
WP_083126857.1\|214337_214628_+	hypothetical protein	Q8LTB2	Lactobacillus_phage	5.9e-12	53.2
WP_065368220.1\|214624_215107_+	class I SAM-dependent methyltransferase	H9C170	Pectobacterium_phage	2.2e-72	81.3
WP_065368221.1\|215103_215544_+	hypothetical protein	NA	NA	NA	NA
WP_065368222.1\|215546_215966_+	HNH endonuclease	C6ZR29	Salmonella_phage	1.5e-56	76.5
WP_065368223.1\|215962_216820_+	hypothetical protein	NA	NA	NA	NA
WP_065368224.1\|216821_217106_+	DUF4752 family protein	K7PHN1	Enterobacterial_phage	4.7e-22	51.7
WP_065368225.1\|217368_217824_+	hypothetical protein	I6PD71	Cronobacter_phage	3.7e-61	68.2
WP_071908147.1\|217823_217994_+	hypothetical protein	G8C7V4	Escherichia_phage	1.4e-16	73.2
WP_065368226.1\|217986_218625_+	hypothetical protein	S4TSR3	Salmonella_phage	1.9e-95	83.0
WP_065368227.1\|218740_219445_+	antiterminator	I6PDF8	Cronobacter_phage	3.1e-54	47.6
WP_156773110.1\|219879_220158_+	hypothetical protein	G0ZNC7	Cronobacter_phage	3.4e-25	75.3
WP_065368229.1\|220159_220669_+	lysozyme	A0A0M3ULD1	Salmonella_phage	4.9e-62	64.7
WP_083126859.1\|220661_221084_+	hypothetical protein	F1C5D3	Cronobacter_phage	1.1e-09	34.1
WP_065368230.1\|221351_221600_+	hypothetical protein	NA	NA	NA	NA
WP_065368231.1\|221660_222401_+	hypothetical protein	A0A1I9KFG9	Aeromonas_phage	3.1e-17	33.0
WP_065368232.1\|222403_223735_+\|terminase	terminase	A0A0U2JTW9	Escherichia_phage	1.7e-154	60.2
WP_065368233.1\|223746_225168_+	DUF1073 domain-containing protein	A0A0U2S5X9	Escherichia_phage	9.1e-90	37.0
WP_065368234.1\|225164_225989_+	hypothetical protein	A0A0U2I1R8	Escherichia_phage	1.2e-52	41.9

DBSCAN-SWA_2

238279 : 245268

Escherichia_phage(33.33%)

plate

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_065368247.1\|238279_238996_+	hypothetical protein	A0A0U2JTX5	Escherichia_phage	5.4e-22	29.6
WP_065368248.1\|238992_239325_+	hypothetical protein	NA	NA	NA	NA
WP_065368249.1\|239321_240740_+\|plate	baseplate J-like family protein	A0A0U2RJZ0	Escherichia_phage	1.1e-42	39.6
WP_065368250.1\|240741_241446_+	hypothetical protein	NA	NA	NA	NA
WP_065368252.1\|241771_242926_+	hypothetical protein	A0A0M3ULD8	Salmonella_phage	7.3e-13	67.2
WP_065368253.1\|242925_243537_+	hypothetical protein	NA	NA	NA	NA
WP_065368254.1\|243544_244585_-	acyltransferase	A0A2H4JA46	uncultured_Caudovirales_phage	3.1e-10	28.4
WP_065368255.1\|244711_244951_+	hypothetical protein	K7P7N3	Enterobacteria_phage	5.0e-25	64.1
WP_065368256.1\|244950_245268_+	hypothetical protein	K7PGV5	Enterobacterial_phage	4.3e-24	51.5

DBSCAN-SWA_3

3712274 : 3799825

Erwinia_phage(24.14%)

head,transposase,tRNA,tail,lysis,plate,capsid,portal,holin,integrase,terminase

attL 3760765:3760813|attR 3793676:3793724

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_017459077.1\|3712274_3713033_+\|tRNA	tRNA isopentenyl-2-thiomethyl-A-37 hydroxylase MiaE	NA	NA	NA	NA
WP_017459076.1\|3713053_3713557_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_065369964.1\|3713754_3714957_+	DUF898 family protein	NA	NA	NA	NA
WP_065369965.1\|3715051_3717907_-\|tRNA	valine--tRNA ligase	A0A1V0SK04	Klosneuvirus	4.2e-142	36.7
WP_017459073.1\|3717906_3718350_-	DNA polymerase III subunit chi	NA	NA	NA	NA
WP_017459072.1\|3718516_3720028_-	leucyl aminopeptidase	Q6GYZ8	Mycoplasma_phage	1.0e-46	37.7
WP_065369966.1\|3720295_3721396_+	LPS export ABC transporter permease LptF	NA	NA	NA	NA
WP_017459070.1\|3721395_3722478_+	LPS export ABC transporter permease LptG	NA	NA	NA	NA
WP_065369967.1\|3722535_3723018_+	hypothetical protein	NA	NA	NA	NA
WP_065369968.1\|3723103_3724741_+	DAK2 domain-containing protein	NA	NA	NA	NA
WP_017459067.1\|3724934_3725954_-	NAD(P)-dependent alcohol dehydrogenase	K7Z7U2	Megavirus	1.3e-42	30.1
WP_065369969.1\|3726191_3726644_+	lysozyme	A0A1B1P9G1	Acinetobacter_phage	2.8e-37	57.5
WP_017459065.1\|3726779_3727415_+	DUF2589 domain-containing protein	NA	NA	NA	NA
WP_065369970.1\|3727472_3728156_+	DUF2589 domain-containing protein	NA	NA	NA	NA
WP_020456325.1\|3728148_3728604_+	lysozyme	A0A0S2SYD0	Pseudomonas_phage	1.9e-33	52.1
WP_065369971.1\|3728620_3729094_+	ribonuclease	NA	NA	NA	NA
WP_045513587.1\|3729149_3729560_+	hypothetical protein	NA	NA	NA	NA
WP_017459060.1\|3729556_3729973_+	hypothetical protein	NA	NA	NA	NA
WP_065369972.1\|3730132_3730660_+	hypothetical protein	NA	NA	NA	NA
WP_017459058.1\|3730755_3731355_-	response regulator transcription factor	NA	NA	NA	NA
WP_065369974.1\|3732170_3733424_+\|integrase	integrase arm-type DNA-binding domain-containing protein	B7SYF8	Stenotrophomonas_phage	1.4e-73	40.7
WP_065369975.1\|3733545_3734340_+	sce7726 family protein	A0A0U2RXY7	Escherichia_phage	3.4e-09	29.7
WP_065369976.1\|3734366_3735434_-	protein beta	NA	NA	NA	NA
WP_065369977.1\|3735436_3735838_-	protein gop	NA	NA	NA	NA
WP_065369978.1\|3736315_3736519_-	transcriptional regulator	A0A2I8TV89	Erwinia_phage	2.9e-13	65.4
WP_065369979.1\|3736522_3737320_-\|capsid	capsid protein	NA	NA	NA	NA
WP_065369980.1\|3737892_3738159_+	AlpA family transcriptional regulator	Q7M299	Enterobacteria_phage	1.5e-30	71.6
WP_071908211.1\|3738155_3738704_+	ash family protein	Q7M2A7	Enterobacteria_phage	5.0e-28	64.8
WP_065369982.1\|3738700_3738928_+	hypothetical protein	NA	NA	NA	NA
WP_065369983.1\|3738924_3739245_+	DUF5375 domain-containing protein	NA	NA	NA	NA
WP_065369984.1\|3739254_3741588_+	DNA primase	Q7M2A8	Enterobacteria_phage	0.0e+00	81.9
WP_020454816.1\|3741991_3742327_-	hypothetical protein	NA	NA	NA	NA
WP_065369985.1\|3742323_3742905_-	hypothetical protein	A0A2R4ANA2	Mycobacterium_phage	1.0e-18	38.4
WP_065369986.1\|3743039_3743426_+	hypothetical protein	NA	NA	NA	NA
WP_065370672.1\|3743792_3744488_+	hypothetical protein	NA	NA	NA	NA
WP_065369987.1\|3744877_3746143_+\|integrase	integrase arm-type DNA-binding domain-containing protein	B7SYF8	Stenotrophomonas_phage	2.4e-81	41.2
WP_065369988.1\|3746340_3749703_-	type III restriction endonuclease subunit R	NA	NA	NA	NA
WP_083126971.1\|3749702_3753125_-	site-specific DNA-methyltransferase	Q1MVP0	Enterobacteria_phage	5.9e-26	27.0
WP_065369989.1\|3753175_3756121_-	DEAD/DEAH box helicase	A0A2H4J643	uncultured_Caudovirales_phage	1.6e-274	51.3
WP_065369990.1\|3756107_3756353_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_073554262.1\|3756565_3756691_+\|transposase	transposase	NA	NA	NA	NA
WP_083126973.1\|3756846_3757701_+\|transposase	IS3 family transposase	U5P429	Shigella_phage	9.7e-79	54.6
WP_105532227.1\|3759033_3760201_+\|transposase	IS3 family transposase	Q716C2	Shigella_phage	1.8e-176	95.7
3760765:3760813	attL	NA	NA	NA	NA
WP_065369993.1\|3760930_3761884_-	hypothetical protein	NA	NA	NA	NA
WP_065369994.1\|3761864_3762902_-\|integrase	tyrosine-type recombinase/integrase	A0A218M4I3	Erwinia_phage	3.3e-190	95.2
WP_065369995.1\|3762901_3763474_-	phage repressor protein CI	F1BUS8	Erwinia_phage	3.8e-71	67.7
WP_065369996.1\|3763609_3763873_+	hypothetical protein	A0A218M4I5	Erwinia_phage	1.8e-39	90.8
WP_065369997.1\|3763903_3764413_+	phage regulatory CII family protein	A0A0M4QWN1	Salmonella_phage	1.2e-79	86.4
WP_071908212.1\|3764417_3764609_+	DUF2724 domain-containing protein	Q6K1F7	Salmonella_virus	6.8e-17	60.6
WP_007370020.1\|3764572_3764911_+	DUF5347 domain-containing protein	A0A218M4I7	Erwinia_phage	1.2e-45	82.1
WP_020455346.1\|3764978_3765206_+	DUF2732 domain-containing protein	F1BUS3	Erwinia_phage	1.1e-21	73.3
WP_065369998.1\|3765205_3765430_+	TraR/DksA family transcriptional regulator	Q6K1F5	Salmonella_virus	2.9e-27	81.1
WP_065369999.1\|3765426_3765702_+	DUF3850 domain-containing protein	A0A0P0I3U9	Klebsiella_phage	4.6e-14	52.6
WP_065370000.1\|3765698_3767921_+	replication endonuclease	A0A218M4H2	Erwinia_phage	0.0e+00	83.9
WP_071908213.1\|3768041_3768233_+	hypothetical protein	A0A218M4I0	Erwinia_phage	8.9e-09	68.9
WP_065370001.1\|3768478_3769966_+	hypothetical protein	NA	NA	NA	NA
WP_065370002.1\|3770051_3770912_+	DNA adenine methylase	B0ZSH4	Halomonas_phage	1.9e-05	21.9
WP_065370003.1\|3771243_3772281_-\|portal	phage portal protein	Q6K1J0	Salmonella_virus	9.4e-161	78.3
WP_065370004.1\|3772280_3774050_-\|terminase	terminase ATPase subunit family protein	A0A0M4RE51	Salmonella_phage	2.0e-296	83.5
WP_065370005.1\|3774227_3775085_+\|capsid	GPO family capsid scaffolding protein	A0A0M3UL81	Salmonella_phage	9.7e-103	74.4
WP_065370006.1\|3775121_3776285_+\|capsid	phage major capsid protein, P2 family	A0A0M4R4W2	Salmonella_phage	3.7e-129	62.8
WP_065370007.1\|3776288_3777047_+\|terminase	terminase endonuclease subunit	Q94MI7	Enterobacteria_phage	9.8e-83	68.1
WP_065370008.1\|3777143_3777650_+\|head	head completion/stabilization protein	M1SNN6	Escherichia_phage	1.1e-64	86.9
WP_065370009.1\|3777649_3777853_+\|tail	phage tail protein	U5N3E7	Enterobacteria_phage	2.5e-25	80.6
WP_020455331.1\|3777843_3778080_+\|holin	holin	A0A218M4L5	Erwinia_phage	6.9e-11	45.2
WP_065370010.1\|3778063_3778576_+	lysozyme	A0A218M4K3	Erwinia_phage	4.8e-73	78.2
WP_083126976.1\|3778572_3779001_+	hypothetical protein	NA	NA	NA	NA
WP_083127060.1\|3779000_3779408_+\|lysis	LysB family phage lysis regulatory protein	A0A218M4K2	Erwinia_phage	3.3e-45	73.1
WP_065370012.1\|3779515_3779983_+\|tail	phage tail protein	A0A0F7LA33	Escherichia_phage	2.2e-64	77.3
WP_065370013.1\|3779975_3780437_+	phage virion morphogenesis protein	O80313	Escherichia_phage	3.1e-47	65.8
WP_065370014.1\|3780444_3781200_+	hypothetical protein	NA	NA	NA	NA
WP_065370015.1\|3781267_3781903_+\|plate	phage baseplate assembly protein V	U5N3F0	Enterobacteria_phage	2.6e-100	86.3
WP_065370016.1\|3781899_3782247_+\|plate	baseplate assembly protein	A0A0F7LDQ1	Escherichia_phage	4.1e-44	78.3
WP_065370017.1\|3782251_3783160_+\|plate	baseplate assembly protein	A0A218M4K5	Erwinia_phage	1.1e-128	78.5
WP_065370018.1\|3783152_3783764_+\|tail	phage tail protein I	A0A218M4J3	Erwinia_phage	2.6e-94	84.1
WP_083126980.1\|3783760_3785227_+	hypothetical protein	A0A0F7LBW5	Escherichia_phage	7.0e-93	65.4
WP_065370019.1\|3785223_3785433_+	hypothetical protein	Q9B026	Phage_GMSE-1	7.8e-06	48.1
WP_065370020.1\|3785535_3786726_+\|tail	phage tail sheath protein	A0A0F7LBW9	Escherichia_phage	7.9e-204	89.6
WP_065370021.1\|3786739_3787258_+\|tail	phage major tail tube protein	A0A0F7LDZ1	Escherichia_phage	2.8e-89	92.4
WP_065370022.1\|3787319_3787595_+\|tail	phage tail assembly protein	A0A0F7LDQ8	Escherichia_phage	9.5e-36	85.7
WP_020455315.1\|3787627_3787747_+\|tail	GpE family phage tail protein	A0A0F7LCR6	Escherichia_phage	3.3e-14	87.2
WP_065370023.1\|3787739_3790211_+\|tail	phage tail tape measure protein	Q858U7	Yersinia_virus	3.6e-267	68.4
WP_065370024.1\|3790223_3790700_+\|tail	phage tail protein	A0A0F7LDE8	Escherichia_phage	4.9e-64	75.2
WP_065370025.1\|3790699_3791857_+	phage late control D family protein	S4TRX8	Salmonella_phage	2.1e-156	76.1
WP_065370026.1\|3792133_3793207_+	hypothetical protein	NA	NA	NA	NA
WP_071908215.1\|3793315_3793534_+	DNA-binding transcriptional regulator	A0A2I8TV89	Erwinia_phage	8.6e-32	83.3
WP_065370027.1\|3793880_3794387_+	G/U mismatch-specific DNA glycosylase	NA	NA	NA	NA
3793676:3793724	attR	NA	NA	NA	NA
WP_017457431.1\|3794445_3796287_-	RNA polymerase sigma factor RpoD	A0A2I7SAT0	Vibrio_phage	8.3e-35	33.7
WP_017457432.1\|3796443_3798189_-	DNA primase	A0A0K1LMQ9	Caulobacter_phage	5.4e-76	37.2
WP_001144069.1\|3798357_3798573_-	30S ribosomal protein S21	NA	NA	NA	NA
WP_017457433.1\|3798811_3799825_+\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	A0A0R6PI74	Moraxella_phage	2.4e-108	59.2

DBSCAN-SWA_4

4290706 : 4358925

Erwinia_phage(32.43%)

tail,tRNA,lysis,plate,capsid,integrase

attL 4282804:4282826|attR 4295458:4295480

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
4282804:4282826	attL	NA	NA	NA	NA
WP_065370284.1\|4290706_4291504_+\|capsid	capsid protein	NA	NA	NA	NA
WP_061493526.1\|4291507_4291711_+	transcriptional regulator	A0A2I8TV89	Erwinia_phage	2.9e-13	65.4
WP_023337669.1\|4292173_4292398_+	DUF2188 domain-containing protein	NA	NA	NA	NA
WP_065370285.1\|4292445_4293042_-	HNH endonuclease	NA	NA	NA	NA
WP_065370286.1\|4293034_4294210_-	AAA family ATPase	NA	NA	NA	NA
WP_065370287.1\|4294210_4295407_-\|integrase	tyrosine-type recombinase/integrase	A0A1B5FPC6	Escherichia_phage	1.0e-105	48.6
WP_017459912.1\|4296362_4296845_-	SsrA-binding protein SmpB	W5RAM5	Staphylococcus_phage	1.4e-29	47.4
4295458:4295480	attR	NA	NA	NA	NA
WP_017459913.1\|4296964_4297441_+	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA
WP_065370288.1\|4297430_4297724_+	RnfH family protein	NA	NA	NA	NA
WP_017459915.1\|4297860_4298202_-	outer membrane protein assembly factor BamE	NA	NA	NA	NA
WP_139164788.1\|4301100_4301697_+	nucleotide exchange factor GrpE	NA	NA	NA	NA
WP_065370290.1\|4301805_4303092_-	HlyC/CorC family transporter	NA	NA	NA	NA
WP_017459920.1\|4303109_4303898_-	inner membrane protein YpjD	NA	NA	NA	NA
WP_017459922.1\|4304064_4305426_+	signal recognition particle protein	NA	NA	NA	NA
WP_017459923.1\|4305675_4305924_+	30S ribosomal protein S16	NA	NA	NA	NA
WP_017459924.1\|4305942_4306491_+	ribosome maturation factor RimM	NA	NA	NA	NA
WP_017459925.1\|4306521_4307289_+\|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	NA	NA	NA	NA
WP_004104634.1\|4307334_4307682_+	50S ribosomal protein L19	NA	NA	NA	NA
WP_017459926.1\|4308112_4308307_-	levansucrase regulator	Q37973	Salmonella_virus	3.9e-20	68.9
WP_065370291.1\|4308385_4309522_-	hypothetical protein	Q7Y4C6	Escherichia_virus	1.2e-95	48.6
WP_065370292.1\|4309521_4309980_-\|tail	phage tail protein	A0A0F7LBX3	Escherichia_phage	6.0e-51	64.9
WP_065370293.1\|4309994_4311875_-\|tail	phage tail tape measure protein	A0A0M3UL85	Salmonella_phage	1.5e-39	47.2
WP_017459930.1\|4311867_4311987_-\|tail	GpE family phage tail protein	A0A0F7LCR6	Escherichia_phage	1.3e-13	87.2
WP_020454794.1\|4312019_4312301_-\|tail	phage tail assembly protein	A0A0F7LDQ8	Escherichia_phage	1.0e-29	78.4
WP_020454793.1\|4312361_4312880_-\|tail	phage major tail tube protein	Q858V0	Yersinia_virus	8.5e-86	88.4
WP_065370294.1\|4312892_4314074_-\|tail	phage tail sheath protein	S4TRX2	Salmonella_phage	4.8e-201	87.8
WP_065370295.1\|4314220_4315171_-\|tail	phage tail protein	A0A2I8TVA9	Erwinia_phage	1.6e-74	74.4
WP_065370296.1\|4315301_4315898_-\|tail	tail fiber assembly protein	A0A218M4J2	Erwinia_phage	3.3e-65	61.9
WP_065370297.1\|4315897_4316959_-\|tail	phage tail protein	A0A2I8TVA9	Erwinia_phage	2.5e-116	61.5
WP_065370298.1\|4317089_4317686_-\|tail	tail fiber assembly protein	A0A218M4J2	Erwinia_phage	1.2e-64	61.9
WP_065370299.1\|4317685_4318744_-\|tail	phage tail protein	A0A2I8TVA9	Erwinia_phage	3.0e-106	57.8
WP_017459937.1\|4318900_4319509_-\|tail	phage tail protein I	A0A218M4J3	Erwinia_phage	3.7e-88	77.5
WP_017459938.1\|4319501_4320410_-\|plate	baseplate assembly protein	A0A218M4K5	Erwinia_phage	4.1e-128	77.5
WP_065370300.1\|4320414_4320762_-\|plate	baseplate assembly protein	A0A0F7LDQ1	Escherichia_phage	2.8e-40	72.2
WP_017459940.1\|4320758_4321394_-\|plate	phage baseplate assembly protein V	U5N3F0	Enterobacteria_phage	2.5e-95	82.0
WP_065370301.1\|4321471_4321939_-\|tail	phage tail protein	A0A0F7LA33	Escherichia_phage	2.8e-48	61.4
WP_065370302.1\|4322046_4322460_-\|lysis	LysB family phage lysis regulatory protein	O80310	Escherichia_phage	3.6e-23	45.3
WP_065370303.1\|4322456_4322966_-	lysozyme	A0A218M4K3	Erwinia_phage	2.1e-65	73.6
WP_017459945.1\|4322940_4323171_-	primosomal protein	A0A218M4L5	Erwinia_phage	4.0e-11	44.6
WP_065370304.1\|4323161_4323365_-\|tail	phage tail protein	Q858W3	Yersinia_virus	1.6e-19	73.3
WP_017459947.1\|4323575_4323761_-	hypothetical protein	A0A0M5M1G5	Salmonella_phage	7.8e-18	77.0
WP_065370305.1\|4323835_4325890_-	replication endonuclease	A0A218M4H2	Erwinia_phage	5.5e-253	65.0
WP_017459949.1\|4325890_4326112_-	TraR/DksA family transcriptional regulator	Q6K1F5	Salmonella_virus	3.3e-23	74.6
WP_065370306.1\|4326111_4326339_-	DUF2732 family protein	NA	NA	NA	NA
WP_065370307.1\|4326406_4326745_-	DUF5347 domain-containing protein	A0A218M4I7	Erwinia_phage	7.6e-35	64.9
WP_156773102.1\|4326783_4327161_-	hypothetical protein	NA	NA	NA	NA
WP_025263876.1\|4327276_4328128_+	phage repressor protein CI	Q6K1G0	Salmonella_virus	1.0e-88	59.1
WP_071908226.1\|4328194_4328749_+	DUF2946 domain-containing protein	NA	NA	NA	NA
WP_065370309.1\|4328811_4330173_+	PepSY domain-containing protein	NA	NA	NA	NA
WP_065370310.1\|4330356_4331427_+	3-deoxy-7-phosphoheptulonate synthase AroF	A0A0F6R6T6	Escherichia_coli_O157_typing_phage	4.8e-91	51.7
WP_065370311.1\|4331436_4332558_+	bifunctional chorismate mutase/prephenate dehydrogenase	NA	NA	NA	NA
WP_065370312.1\|4332626_4333499_+	SMP-30/gluconolactonase/LRE family protein	NA	NA	NA	NA
WP_065370313.1\|4333495_4334656_-	bifunctional chorismate mutase/prephenate dehydratase	NA	NA	NA	NA
WP_017459960.1\|4334913_4335252_-	ribosome-associated translation inhibitor RaiA	NA	NA	NA	NA
WP_017459961.1\|4335518_4336256_-	outer membrane protein assembly factor BamD	NA	NA	NA	NA
WP_065370314.1\|4336387_4337368_+	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	NA	NA	NA	NA
WP_065370315.1\|4337364_4338096_+	polyphenol oxidase	NA	NA	NA	NA
WP_065370316.1\|4338225_4340799_+	ATP-dependent chaperone ClpB	H6X3M6	Enterobacteria_phage	1.2e-124	34.9
WP_065370318.1\|4346742_4348041_+	MFS transporter	Q6JIH2	Burkholderia_virus	6.9e-44	31.1
WP_017459054.1\|4348044_4348365_-	YfiM family lipoprotein	NA	NA	NA	NA
WP_065370319.1\|4348410_4349766_-	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA
WP_065370320.1\|4349885_4352540_-	protein lysine acetyltransferase	NA	NA	NA	NA
WP_065370321.1\|4352572_4353271_-	DTW domain-containing protein	NA	NA	NA	NA
WP_017459050.1\|4353340_4353760_-	thioredoxin TrxC	A0A0K2FIM3	Achromobacter_phage	6.3e-15	38.5
WP_065370322.1\|4353964_4355083_+\|tRNA	tRNA/rRNA methyltransferase	NA	NA	NA	NA
WP_017459048.1\|4355291_4355981_-	uracil-DNA glycosylase	A0A172DS90	Canid_alphaherpesvirus	1.8e-54	47.9
WP_065370323.1\|4356296_4356680_+	autonomous glycyl radical cofactor GrcA	A0A193GZ98	Escherichia_phage	1.4e-32	71.8
WP_017459046.1\|4356723_4358058_-	ATP-dependent RNA helicase SrmB	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	6.7e-42	30.4
WP_065370324.1\|4358187_4358925_+\|tRNA	tRNA1(Val) (adenine(37)-N6)-methyltransferase	NA	NA	NA	NA

DBSCAN-SWA_5

4783832 : 4792189

Enterobacteria_phage(66.67%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_065370528.1\|4783832_4784780_+	ABC transporter ATP-binding protein	F2Y1V5	Organic_Lake_phycodnavirus	5.8e-08	27.8
WP_065370529.1\|4784763_4785501_+	ABC transporter permease	NA	NA	NA	NA
WP_017459817.1\|4785475_4785589_-	protein YohO	NA	NA	NA	NA
WP_017459818.1\|4785649_4786381_-	HTH-type transcriptional regulator MlrA	Q9EYF2	Enterobacteria_phage	9.2e-86	76.4
WP_017459819.1\|4786600_4788289_+	sensor histidine kinase	Q9EYF3	Enterobacteria_phage	7.2e-259	84.5
WP_017459820.1\|4788282_4789002_+	two-component system response regulator BtsR	NA	NA	NA	NA
WP_065370530.1\|4789055_4789541_+	DUF1456 family protein	Q9EYF4	Enterobacteria_phage	2.5e-63	78.7
WP_065370531.1\|4789613_4790069_-	YehR family lipoprotein	Q9EYF5	Enterobacteria_phage	1.6e-27	42.3
WP_065370691.1\|4790155_4792189_-\|tRNA	methionine--tRNA ligase	A0A1V0SDF2	Indivirus	4.7e-55	28.2

DBSCAN-SWA_6

4884718 : 4894153

Enterobacteria_phage(42.86%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_065370576.1\|4884718_4886134_+	colanic acid biosynthesis protein WcaM	A0A291LBB9	Klebsiella_phage	4.9e-19	32.2
WP_065370577.1\|4886311_4887205_+	GalU regulator GalF	A0A127AW70	Bacillus_phage	1.8e-43	40.3
WP_065370578.1\|4887612_4888701_+	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	5.7e-100	53.3
WP_065370579.1\|4888715_4889585_+	glucose-1-phosphate thymidylyltransferase RfbA	I7I009	Enterobacteria_phage	3.2e-109	66.0
WP_065370580.1\|4889609_4890500_+	dTDP-4-dehydrorhamnose reductase	A0A291LA50	Escherichia_phage	5.3e-27	33.0
WP_065370581.1\|4890517_4891066_+	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	1.0e-49	57.4
WP_156773108.1\|4891062_4891995_+	glycosyltransferase	NA	NA	NA	NA
WP_065370583.1\|4892061_4892871_+	ABC transporter permease	NA	NA	NA	NA
WP_065370584.1\|4892860_4894153_+	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	4.4e-14	27.4

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP016337

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection