CRISPRimmunity

Please click to download your results

Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP016324	Vibrio cholerae 2740-80 chromosome 1, complete sequence	0 crisprs	cas3,RT,DEDDh,DinG,csx1,WYL,csa3	0	0	4	0
NZ_CP016325	Vibrio cholerae 2740-80 chromosome 2	0 crisprs	PD-DExK,csa3,cas3	0	0	0	0

Results visualization

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

239397 : 311249

Vibrio_phage(85.42%)

head,transposase,plate,protease,tail

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000208249.1\|239397_239955_+\|protease	ATP-dependent protease subunit HslV	NA	NA	NA	NA
WP_001293366.1\|240020_241352_+	HslU--HslV peptidase ATPase subunit	A0A191ZC11	Erwinia_phage	3.7e-40	28.4
WP_001066162.1\|241455_242373_+	1,4-dihydroxy-2-naphthoate polyprenyltransferase	NA	NA	NA	NA
WP_000456236.1\|242447_242963_+	ribonuclease E activity regulator RraA	NA	NA	NA	NA
WP_001887306.1\|243049_244432_-	MATE family efflux transporter	NA	NA	NA	NA
WP_001254176.1\|244549_245323_-	triose-phosphate isomerase	NA	NA	NA	NA
WP_001133286.1\|245566_245917_+	5-carboxymethyl-2-hydroxymuconate Delta-isomerase	NA	NA	NA	NA
WP_000058339.1\|245936_246377_+	DUF805 domain-containing protein	NA	NA	NA	NA
WP_000188676.1\|246503_246863_-	DUF3135 domain-containing protein	NA	NA	NA	NA
WP_000859357.1\|247001_247619_-	transcriptional regulator	NA	NA	NA	NA
WP_001026274.1\|247978_248269_+	co-chaperone GroES	A0A221S331	uncultured_virus	6.5e-11	38.3
WP_000729136.1\|248322_249957_+	chaperonin GroEL	A0A2I7SAK5	Vibrio_phage	2.1e-191	68.1
WP_001039513.1\|250167_250728_+	hypothetical protein	NA	NA	NA	NA
WP_001120173.1\|250764_251787_-	EF-P beta-lysylation protein EpmB	NA	NA	NA	NA
WP_000246893.1\|251819_252386_+	elongation factor P	NA	NA	NA	NA
WP_000611152.1\|252499_252862_-	fumarate reductase subunit FrdD	NA	NA	NA	NA
WP_000071094.1\|252872_253256_-	fumarate reductase subunit FrdC	NA	NA	NA	NA
WP_001276017.1\|253258_254017_-	succinate dehydrogenase/fumarate reductase iron-sulfur subunit	NA	NA	NA	NA
WP_001166592.1\|254016_255825_-	fumarate reductase (quinol) flavoprotein subunit	NA	NA	NA	NA
WP_000185039.1\|256133_257108_+	elongation factor P--(R)-beta-lysine ligase	A0A1V0SAC0	Catovirus	4.3e-22	26.6
WP_001158897.1\|257237_257672_+	rhodanese-like domain-containing protein	NA	NA	NA	NA
WP_000796512.1\|257838_258303_+	protein-export chaperone SecB	NA	NA	NA	NA
WP_000005325.1\|258492_259527_+	NAD(P)H-dependent glycerol-3-phosphate dehydrogenase	NA	NA	NA	NA
WP_000806519.1\|259599_260421_+	serine O-acetyltransferase	NA	NA	NA	NA
WP_000056565.1\|260536_261076_-	PadR family transcriptional regulator	A0A2I7RSZ7	Vibrio_phage	3.5e-10	33.6
WP_001003592.1\|261434_264065_-	phosphoenolpyruvate carboxylase	NA	NA	NA	NA
WP_001130865.1\|264271_265408_-	acetylornithine deacetylase	NA	NA	NA	NA
WP_000921321.1\|265563_266565_+	N-acetyl-gamma-glutamyl-phosphate reductase	NA	NA	NA	NA
WP_001281558.1\|266574_267363_+	acetylglutamate kinase	NA	NA	NA	NA
WP_000049171.1\|267438_268653_+	argininosuccinate synthase	NA	NA	NA	NA
WP_001240133.1\|268885_270262_+	argininosuccinate lyase	NA	NA	NA	NA
WP_000742074.1\|270512_270767_-	DUF3624 domain-containing protein	NA	NA	NA	NA
WP_000809405.1\|271001_272456_-	dihydrolipoyl dehydrogenase	NA	NA	NA	NA
WP_000495223.1\|272527_273259_-	glutathione peroxidase	A0A1D8KSL1	Synechococcus_phage	3.2e-46	55.9
WP_001025909.1\|273398_274292_+	DNA-binding transcriptional regulator OxyR	NA	NA	NA	NA
WP_000668733.1\|274365_276843_-	penicillin-binding protein 1A	NA	NA	NA	NA
WP_001065600.1\|277610_278147_-	hypothetical protein	H9C146	Vibrio_phage	6.8e-30	58.1
WP_001895339.1\|278146_278998_-	hypothetical protein	Q8HA52	Vibrio_phage	1.9e-42	60.4
WP_000510163.1\|278997_279585_-	DUF2313 domain-containing protein	A0A2I7S9L6	Vibrio_phage	2.1e-93	79.5
WP_001147110.1\|279569_280637_-\|plate	baseplate J/gp47 family protein	A0A2I7S9E5	Vibrio_phage	1.6e-147	72.1
WP_000095018.1\|280626_281076_-	phage GP46 family protein	M4MB61	Vibrio_phage	1.1e-54	73.6
WP_170826454.1\|281078_281696_-\|plate	phage baseplate assembly protein V	M4MCP6	Vibrio_phage	4.0e-74	70.2
WP_001286435.1\|281689_282769_-	hypothetical protein	M4M9L5	Vibrio_phage	3.0e-157	75.4
WP_000863380.1\|282761_284081_-	DNA circularization N-terminal domain-containing protein	A0A2I7S9E8	Vibrio_phage	5.0e-167	68.0
WP_162493705.1\|284092_285715_-	tape measure protein	A0A2I7S9D9	Vibrio_phage	6.0e-138	52.6
WP_000996598.1\|285921_286281_-\|tail	phage tail assembly protein	A0A2I7S9E0	Vibrio_phage	5.0e-37	64.1
WP_001895328.1\|286280_286634_-\|tail	phage tail tube protein	A0A2I7S9D5	Vibrio_phage	7.9e-43	69.2
WP_001128141.1\|286648_288133_-\|tail	phage tail sheath subtilisin-like domain-containing protein	M1Q565	Vibrio_phage	1.5e-207	72.3
WP_000437435.1\|288135_288336_-	DUF2635 domain-containing protein	NA	NA	NA	NA
WP_000100991.1\|288349_288949_-	hypothetical protein	M4MHF0	Vibrio_phage	6.4e-69	61.2
WP_000513061.1\|288945_289488_-	phage virion morphogenesis protein	A0A2I7S9D7	Vibrio_phage	3.3e-72	74.9
WP_001029276.1\|289487_289922_-	DUF1320 domain-containing protein	A0A2I7S9E9	Vibrio_phage	9.6e-67	88.2
WP_000004756.1\|289927_290503_-	hypothetical protein	M4M9M3	Vibrio_phage	4.0e-20	54.5
WP_001218331.1\|290591_291491_-\|head	Mu-like prophage major head subunit gpT family protein	M4MB71	Vibrio_phage	2.6e-146	81.4
WP_001262460.1\|291493_292450_-	hypothetical protein	M1Q578	Vibrio_phage	4.7e-98	59.8
WP_001249579.1\|292782_293067_-	hypothetical protein	NA	NA	NA	NA
WP_000638762.1\|293066_293702_-	hypothetical protein	A0A1V0E8A2	Vibrio_phage	1.7e-40	47.3
WP_000638754.1\|293698_294211_-	hypothetical protein	A0A0F6N5P8	Escherichia_phage	5.3e-32	45.6
WP_000246042.1\|294207_294456_-	hypothetical protein	NA	NA	NA	NA
WP_001895334.1\|294467_295241_-	hypothetical protein	M1PVV7	Vibrio_phage	1.3e-114	75.5
WP_000027033.1\|295233_296793_-	DUF935 domain-containing protein	M4M9P3	Vibrio_phage	3.5e-228	76.1
WP_001105344.1\|296789_298355_-	hypothetical protein	M4MHG0	Vibrio_phage	4.5e-231	78.0
WP_001195537.1\|298355_298922_-	DUF3486 family protein	M4MCR3	Vibrio_phage	3.2e-46	55.0
WP_000008606.1\|298933_299224_-	hypothetical protein	A0A2I7S9D8	Vibrio_phage	3.9e-40	82.3
WP_000362983.1\|299232_299532_-	DUF2730 family protein	M1Q558	Vibrio_phage	1.1e-29	70.0
WP_001281317.1\|299531_299762_-	TraR/DksA C4-type zinc finger protein	M4MHG5	Vibrio_phage	8.8e-19	63.2
WP_001120998.1\|299758_300358_-	hypothetical protein	M1NVP4	Vibrio_phage	5.8e-46	57.3
WP_000493682.1\|300620_301178_-	hypothetical protein	A0A2I7S9B9	Vibrio_phage	1.8e-70	72.1
WP_001029055.1\|301262_301679_-	hypothetical protein	M4MHG9	Vibrio_phage	6.3e-31	50.0
WP_000837433.1\|301757_302204_-	hypothetical protein	NA	NA	NA	NA
WP_000040562.1\|302193_302739_-	regulatory protein GemA	A0A2I7S9B8	Vibrio_phage	4.5e-53	58.2
WP_000404914.1\|302751_303030_-	hypothetical protein	NA	NA	NA	NA
WP_000466681.1\|303032_303266_-	hypothetical protein	M4M9N5	Vibrio_phage	4.1e-24	66.2
WP_000762331.1\|303345_303876_-	hypothetical protein	A0A0M3LPP6	Mannheimia_phage	2.2e-28	42.9
WP_000856884.1\|303872_304142_-	DUF3850 domain-containing protein	C1KFE1	Lactobacillus_virus	2.5e-12	47.6
WP_001895326.1\|304144_304339_-	hypothetical protein	NA	NA	NA	NA
WP_000413231.1\|304491_304689_-	hypothetical protein	NA	NA	NA	NA
WP_000551393.1\|304672_304915_-	hypothetical protein	M4MCS5	Vibrio_phage	4.2e-19	62.0
WP_000512064.1\|304907_305180_-	hypothetical protein	A0A2I7S9G2	Vibrio_phage	2.9e-21	61.2
WP_001192102.1\|305189_305804_-	DUF3164 family protein	M4MHH7	Vibrio_phage	2.0e-86	79.6
WP_001032752.1\|305953_306328_-	hypothetical protein	M4MB90	Vibrio_phage	2.9e-27	59.0
WP_001216028.1\|306337_306907_-	hypothetical protein	NA	NA	NA	NA
WP_000157299.1\|306916_307141_-	hypothetical protein	NA	NA	NA	NA
WP_000800334.1\|307148_308093_-	AAA family ATPase	M4M9P4	Vibrio_phage	1.1e-126	73.7
WP_001895336.1\|308119_310123_-\|transposase	Mu transposase C-terminal domain-containing protein	A0A2I7S9A8	Vibrio_phage	2.2e-275	69.8
WP_000373567.1\|310134_310359_-	helix-turn-helix domain-containing protein	M1PVU4	Vibrio_phage	2.3e-16	61.9
WP_000005494.1\|310511_311249_+	transcriptional regulator	A0A2I7S9A5	Vibrio_phage	1.4e-81	61.3

DBSCAN-SWA_2

687325 : 693942

Staphylococcus_phage(66.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000210573.1\|687325_688459_+	glutamate 5-kinase	A0A1X9I5D0	Streptococcus_phage	1.4e-64	40.4
WP_000366574.1\|688470_689721_+	glutamate-5-semialdehyde dehydrogenase	A0A1X9I5D4	Streptococcus_phage	5.0e-100	49.5
WP_000543544.1\|689820_690270_+	transcriptional regulator NrdR	NA	NA	NA	NA
WP_001131994.1\|690295_691399_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	A0A2H4PQS8	Staphylococcus_phage	1.3e-43	33.1
WP_000493874.1\|691403_692057_+	riboflavin synthase	A0A2H4PQS5	Staphylococcus_phage	1.2e-31	38.2
WP_001122865.1\|692097_693207_+	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	A0A2H4PQS2	Staphylococcus_phage	6.7e-64	39.8
WP_000864130.1\|693471_693942_+	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	6.8e-34	48.7

DBSCAN-SWA_3

2331634 : 2338827

Anguillid_herpesvirus(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001162850.1\|2331634_2332063_-	nucleoside-diphosphate kinase	D2E8E1	Anguillid_herpesvirus	1.0e-20	38.4
WP_000107237.1\|2332266_2333556_-	aminopeptidase PepB	Q6GYZ8	Mycoplasma_phage	1.7e-34	34.3
WP_000872176.1\|2333775_2333970_-	Fe-S cluster assembly protein IscX	NA	NA	NA	NA
WP_001124187.1\|2334018_2334357_-	ISC system 2Fe-2S type ferredoxin	NA	NA	NA	NA
WP_001196560.1\|2334370_2336221_-	Fe-S protein assembly chaperone HscA	A0A0N9QXN8	Chrysochromulina_ericina_virus	5.3e-106	41.1
WP_001105747.1\|2336244_2336760_-	co-chaperone HscB	NA	NA	NA	NA
WP_000301571.1\|2336808_2337132_-	iron-sulfur cluster assembly protein IscA	A0A2H4N7N5	Lake_Baikal_phage	3.0e-25	50.5
WP_000331703.1\|2337192_2337576_-	Fe-S cluster assembly scaffold IscU	A0A218MKD1	uncultured_virus	5.4e-53	78.2
WP_000775253.1\|2337612_2338827_-	IscS subfamily cysteine desulfurase	A0A0H3TPH2	Faustovirus	1.1e-32	30.5

DBSCAN-SWA_4

2570450 : 2577674

uncultured_Mediterranean_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001279365.1\|2570450_2571338_+	cysteine synthase CysM	A0A1X9I5K7	Streptococcus_phage	4.1e-56	41.1
WP_001895515.1\|2571605_2574194_+	DNA mismatch repair protein MutS	A0A1V0SJ67	Klosneuvirus	2.2e-33	25.7
WP_000116737.1\|2574286_2575294_-	RNA polymerase sigma factor RpoS	F4YCU2	Synechococcus_phage	6.0e-35	34.2
WP_000177568.1\|2575367_2576303_-	murein hydrolase activator NlpD	D7RWE0	Brochothrix_phage	7.8e-05	34.7
WP_000002982.1\|2576302_2576929_-	protein-L-isoaspartate(D-aspartate) O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	2.0e-36	52.1
WP_000698379.1\|2576921_2577674_-	5'/3'-nucleotidase SurE	A0A1B1ITZ2	uncultured_Mediterranean_phage	8.0e-69	53.3

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage