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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP016358 Escherichia coli strain K-15KW01 chromosome, complete genome 6 crisprs DinG,DEDDh,cas3,csa3,RT,PD-DExK,WYL,cas14j 0 5 6 0

Results visualization

1. NZ_CP016358
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP016358_1 848847-848960 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP016358_2 2751045-2751246 Orphan NA
2 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP016358_3 2811678-2811804 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP016358_4 3279469-3279608 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP016358_5 3988600-3988735 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP016358_6 4517048-4517195 Orphan I-F
2 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP016358_3 3.1|2811713|57|NZ_CP016358|CRISPRCasFinder 2811713-2811769 57 MT230402 Escherichia coli strain DH5alpha plasmid pESBL87, complete sequence 271-327 5 0.912
NZ_CP016358_6 6.2|4517136|32|NZ_CP016358|CRISPRCasFinder 4517136-4517167 32 NC_015163 Deinococcus proteolyticus MRP plasmid pDEIPR04, complete sequence 83332-83363 8 0.75
NZ_CP016358_2 2.2|2751180|56|NZ_CP016358|PILER-CR 2751180-2751235 56 NZ_CP044308 Escherichia coli strain C27A plasmid pC27A-3, complete sequence 13988-14043 9 0.839
NZ_CP016358_2 2.2|2751180|56|NZ_CP016358|PILER-CR 2751180-2751235 56 NZ_AP023206 Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence 87116-87171 11 0.804
NZ_CP016358_4 4.1|3279513|52|NZ_CP016358|CRISPRCasFinder 3279513-3279564 52 NZ_AP023208 Escherichia coli strain TUM18781 plasmid pMTY18781-3, complete sequence 12113-12164 11 0.788
NZ_CP016358_4 4.1|3279513|52|NZ_CP016358|CRISPRCasFinder 3279513-3279564 52 MT230402 Escherichia coli strain DH5alpha plasmid pESBL87, complete sequence 272-323 11 0.788
NZ_CP016358_4 4.1|3279513|52|NZ_CP016358|CRISPRCasFinder 3279513-3279564 52 NZ_AP023207 Escherichia coli strain TUM18781 plasmid pMTY18781-2, complete sequence 31252-31303 11 0.788
NZ_CP016358_3 3.1|2811713|57|NZ_CP016358|CRISPRCasFinder 2811713-2811769 57 NZ_CP010208 Escherichia coli strain M11 plasmid B, complete sequence 30155-30211 12 0.789
NZ_CP016358_3 3.1|2811713|57|NZ_CP016358|CRISPRCasFinder 2811713-2811769 57 NZ_CP053606 Escherichia coli strain NEB_Turbo plasmid F', complete sequence 43-99 13 0.772
NZ_CP016358_3 3.1|2811713|57|NZ_CP016358|CRISPRCasFinder 2811713-2811769 57 NZ_CP053608 Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence 42-98 13 0.772
NZ_CP016358_3 3.1|2811713|57|NZ_CP016358|CRISPRCasFinder 2811713-2811769 57 NZ_CP044307 Escherichia coli strain C27A plasmid pC27A-2, complete sequence 18328-18384 13 0.772
NZ_CP016358_3 3.1|2811713|57|NZ_CP016358|CRISPRCasFinder 2811713-2811769 57 NZ_CP014271 Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence 42-98 13 0.772
NZ_CP016358_3 3.1|2811713|57|NZ_CP016358|CRISPRCasFinder 2811713-2811769 57 NZ_CP014273 Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence 42-98 13 0.772
NZ_CP016358_4 4.1|3279513|52|NZ_CP016358|CRISPRCasFinder 3279513-3279564 52 NZ_CP053606 Escherichia coli strain NEB_Turbo plasmid F', complete sequence 208982-209033 13 0.75
NZ_CP016358_4 4.1|3279513|52|NZ_CP016358|CRISPRCasFinder 3279513-3279564 52 NZ_CP053608 Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence 219476-219527 13 0.75
NZ_CP016358_4 4.1|3279513|52|NZ_CP016358|CRISPRCasFinder 3279513-3279564 52 NZ_CP014271 Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence 210310-210361 13 0.75
NZ_CP016358_4 4.1|3279513|52|NZ_CP016358|CRISPRCasFinder 3279513-3279564 52 NZ_CP014273 Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence 191265-191316 13 0.75
NZ_CP016358_3 3.1|2811713|57|NZ_CP016358|CRISPRCasFinder 2811713-2811769 57 NZ_AP023206 Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence 87115-87171 14 0.754
NZ_CP016358_3 3.1|2811713|57|NZ_CP016358|CRISPRCasFinder 2811713-2811769 57 NZ_CP053606 Escherichia coli strain NEB_Turbo plasmid F', complete sequence 229227-229283 14 0.754
NZ_CP016358_3 3.1|2811713|57|NZ_CP016358|CRISPRCasFinder 2811713-2811769 57 NZ_CP053606 Escherichia coli strain NEB_Turbo plasmid F', complete sequence 229328-229384 14 0.754
NZ_CP016358_3 3.1|2811713|57|NZ_CP016358|CRISPRCasFinder 2811713-2811769 57 NZ_CP053606 Escherichia coli strain NEB_Turbo plasmid F', complete sequence 229429-229485 14 0.754
NZ_CP016358_3 3.1|2811713|57|NZ_CP016358|CRISPRCasFinder 2811713-2811769 57 NZ_CP053606 Escherichia coli strain NEB_Turbo plasmid F', complete sequence 4114-4170 14 0.754
NZ_CP016358_3 3.1|2811713|57|NZ_CP016358|CRISPRCasFinder 2811713-2811769 57 NZ_CP053608 Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence 239721-239777 14 0.754
NZ_CP016358_3 3.1|2811713|57|NZ_CP016358|CRISPRCasFinder 2811713-2811769 57 NZ_CP053608 Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence 239822-239878 14 0.754
NZ_CP016358_3 3.1|2811713|57|NZ_CP016358|CRISPRCasFinder 2811713-2811769 57 NZ_CP053608 Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence 239923-239979 14 0.754
NZ_CP016358_3 3.1|2811713|57|NZ_CP016358|CRISPRCasFinder 2811713-2811769 57 NZ_CP053608 Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence 4113-4169 14 0.754
NZ_CP016358_3 3.1|2811713|57|NZ_CP016358|CRISPRCasFinder 2811713-2811769 57 NZ_CP014271 Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence 230633-230689 14 0.754
NZ_CP016358_3 3.1|2811713|57|NZ_CP016358|CRISPRCasFinder 2811713-2811769 57 NZ_CP014271 Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence 230734-230790 14 0.754
NZ_CP016358_3 3.1|2811713|57|NZ_CP016358|CRISPRCasFinder 2811713-2811769 57 NZ_CP014271 Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence 230835-230891 14 0.754
NZ_CP016358_3 3.1|2811713|57|NZ_CP016358|CRISPRCasFinder 2811713-2811769 57 NZ_CP014271 Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence 4113-4169 14 0.754
NZ_CP016358_3 3.1|2811713|57|NZ_CP016358|CRISPRCasFinder 2811713-2811769 57 NZ_CP014273 Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence 211603-211659 14 0.754
NZ_CP016358_3 3.1|2811713|57|NZ_CP016358|CRISPRCasFinder 2811713-2811769 57 NZ_CP014273 Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence 211704-211760 14 0.754
NZ_CP016358_3 3.1|2811713|57|NZ_CP016358|CRISPRCasFinder 2811713-2811769 57 NZ_CP014273 Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence 211805-211861 14 0.754
NZ_CP016358_3 3.1|2811713|57|NZ_CP016358|CRISPRCasFinder 2811713-2811769 57 NZ_CP014273 Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence 4113-4169 14 0.754
NZ_CP016358_3 3.1|2811713|57|NZ_CP016358|CRISPRCasFinder 2811713-2811769 57 NZ_CP044147 Escherichia coli O157 strain AR-0428 plasmid pAR-0428-2 7392-7448 14 0.754
NZ_CP016358_3 3.1|2811713|57|NZ_CP016358|CRISPRCasFinder 2811713-2811769 57 CP044351 Escherichia coli strain 194195 plasmid p194195_1, complete sequence 84216-84272 14 0.754
NZ_CP016358_2 2.1|2751081|63|NZ_CP016358|PILER-CR 2751081-2751143 63 NZ_AP023206 Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence 87115-87177 15 0.762

1. spacer 3.1|2811713|57|NZ_CP016358|CRISPRCasFinder matches to MT230402 (Escherichia coli strain DH5alpha plasmid pESBL87, complete sequence) position: , mismatch: 5, identity: 0.912

atcaatgcctgatgcgacgctgtcgcgtcttatcaggcctac-aactattgccgacct	CRISPR spacer
atcaatgcctgatgcgacgctgtcgcgtcttatcaggcctacaaaccgttaccgact-	Protospacer
****************************************** ***..**.*****. 

2. spacer 6.2|4517136|32|NZ_CP016358|CRISPRCasFinder matches to NC_015163 (Deinococcus proteolyticus MRP plasmid pDEIPR04, complete sequence) position: , mismatch: 8, identity: 0.75

ttgccgcggatcctgtctgccaataatgacaa	CRISPR spacer
ctggacggcatcctgtctgccaattttgacaa	Protospacer
.**    * ***************  ******

3. spacer 2.2|2751180|56|NZ_CP016358|PILER-CR matches to NZ_CP044308 (Escherichia coli strain C27A plasmid pC27A-3, complete sequence) position: , mismatch: 9, identity: 0.839

tacag-tgcccgatgcgacgctgccgcgtcttatcgggcctacaaa-agttctgaacc	CRISPR spacer
-acggatgcccgatgcgacgctggcgcgtcttatcgggcctacaaacggccccgaat-	Protospacer
 **.* ***************** ********************** .*..*.***. 

4. spacer 2.2|2751180|56|NZ_CP016358|PILER-CR matches to NZ_AP023206 (Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence) position: , mismatch: 11, identity: 0.804

tacagtgcccgatgcgacgctgccgcgtcttatcgggcctacaaaagttctgaacc----	CRISPR spacer
cacgatgcctgatgcgacgctgccgcgtcttatcaggcctacaaaa----tcaatcgctt	Protospacer
.**..****.************************.***********    * **.*    

5. spacer 4.1|3279513|52|NZ_CP016358|CRISPRCasFinder matches to NZ_AP023208 (Escherichia coli strain TUM18781 plasmid pMTY18781-3, complete sequence) position: , mismatch: 11, identity: 0.788

gccttgcctgatgcgacgctgtcgcgtctcatcaggcctacgagttcagtgc	CRISPR spacer
tcggtgcctgatgcgacgctggcgcgtcttatcaggcctacgagtcgcccgt	Protospacer
 *  ***************** *******.***************.   .*.

6. spacer 4.1|3279513|52|NZ_CP016358|CRISPRCasFinder matches to MT230402 (Escherichia coli strain DH5alpha plasmid pESBL87, complete sequence) position: , mismatch: 11, identity: 0.788

gccttgcctgatgcgacgctgtcgcgtctcatcaggcctacgagttcagtgc-	CRISPR spacer
tcaatgcctgatgcgacgctgtcgcgtcttatcaggcctacaaa-ccgttacc	Protospacer
 *  *************************.***********.*. .*. *.* 

7. spacer 4.1|3279513|52|NZ_CP016358|CRISPRCasFinder matches to NZ_AP023207 (Escherichia coli strain TUM18781 plasmid pMTY18781-2, complete sequence) position: , mismatch: 11, identity: 0.788

gccttgcctgatgcgacgctgtcgcgtctcatcaggcctacgagttcagtgc--	CRISPR spacer
tcaatgcctgatgcgacgctgtcgcgtcttatcaggcctacag--ccgttgcca	Protospacer
 *  *************************.***********..  .*. ***  

8. spacer 3.1|2811713|57|NZ_CP016358|CRISPRCasFinder matches to NZ_CP010208 (Escherichia coli strain M11 plasmid B, complete sequence) position: , mismatch: 12, identity: 0.789

atcaatgcctgatgcgacgctgtcgcgtcttatcaggcctacaa-ctattgccgacct	CRISPR spacer
tctgatgcctgatgcgacgctgacgcgtcttatcatgcctacaatctgcacccgaac-	Protospacer
 ...****************** ************ ******** **..  **** * 

9. spacer 3.1|2811713|57|NZ_CP016358|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 13, identity: 0.772

atcaatgcctgatgcgacgctgtcgcgtcttatcaggcctacaa--ctattgccgacct	CRISPR spacer
gctgatgcctgatgcgacgctgacgcgtcttatcatgcctacaaatctgtacgcgaa--	Protospacer
....****************** ************ ********  **.*   ***   

10. spacer 3.1|2811713|57|NZ_CP016358|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 13, identity: 0.772

atcaatgcctgatgcgacgctgtcgcgtcttatcaggcctacaa--ctattgccgacct	CRISPR spacer
gctgatgcctgatgcgacgctgacgcgtcttatcatgcctacaaatctgtacgcgaa--	Protospacer
....****************** ************ ********  **.*   ***   

11. spacer 3.1|2811713|57|NZ_CP016358|CRISPRCasFinder matches to NZ_CP044307 (Escherichia coli strain C27A plasmid pC27A-2, complete sequence) position: , mismatch: 13, identity: 0.772

atcaatgcctgatgcgacgctgtcgcgtcttatcaggcctacaa--ctattgccgacct	CRISPR spacer
gctgatgcctgatgcgacgctgacgcgtcttatcatgcctacaaatctgtacgcgaa--	Protospacer
....****************** ************ ********  **.*   ***   

12. spacer 3.1|2811713|57|NZ_CP016358|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 13, identity: 0.772

atcaatgcctgatgcgacgctgtcgcgtcttatcaggcctacaa--ctattgccgacct	CRISPR spacer
gctgatgcctgatgcgacgctgacgcgtcttatcatgcctacaaatctgtacgcgaa--	Protospacer
....****************** ************ ********  **.*   ***   

13. spacer 3.1|2811713|57|NZ_CP016358|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 13, identity: 0.772

atcaatgcctgatgcgacgctgtcgcgtcttatcaggcctacaa--ctattgccgacct	CRISPR spacer
gctgatgcctgatgcgacgctgacgcgtcttatcatgcctacaaatctgtacgcgaa--	Protospacer
....****************** ************ ********  **.*   ***   

14. spacer 4.1|3279513|52|NZ_CP016358|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 13, identity: 0.75

gccttgcctgatgcgacgctgtcgcgtctcatcaggcctacgagttcagtgc----	CRISPR spacer
cagatgcctgatgcgacgctgacgcgtcttatcaggcctac----ccactgttttt	Protospacer
    ***************** *******.***********    .** **.    

15. spacer 4.1|3279513|52|NZ_CP016358|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 13, identity: 0.75

gccttgcctgatgcgacgctgtcgcgtctcatcaggcctacgagttcagtgc----	CRISPR spacer
cagatgcctgatgcgacgctgacgcgtcttatcaggcctac----ccactgttttt	Protospacer
    ***************** *******.***********    .** **.    

16. spacer 4.1|3279513|52|NZ_CP016358|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 13, identity: 0.75

gccttgcctgatgcgacgctgtcgcgtctcatcaggcctacgagttcagtgc----	CRISPR spacer
cagatgcctgatgcgacgctgacgcgtcttatcaggcctac----ccactgttttt	Protospacer
    ***************** *******.***********    .** **.    

17. spacer 4.1|3279513|52|NZ_CP016358|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 13, identity: 0.75

gccttgcctgatgcgacgctgtcgcgtctcatcaggcctacgagttcagtgc----	CRISPR spacer
cagatgcctgatgcgacgctgacgcgtcttatcaggcctac----ccactgttttt	Protospacer
    ***************** *******.***********    .** **.    

18. spacer 3.1|2811713|57|NZ_CP016358|CRISPRCasFinder matches to NZ_AP023206 (Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence) position: , mismatch: 14, identity: 0.754

atcaatgcctgatgcgacgctgtcgcgtcttatcaggcctacaactattgccgacct	CRISPR spacer
cacgatgcctgatgcgacgctgccgcgtcttatcaggcctacaaaatcaatcgcttt	Protospacer
  *.******************.*********************   . ..** ..*

19. spacer 3.1|2811713|57|NZ_CP016358|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 14, identity: 0.754

atcaatgcctgatgcgacgctgtcgcgtcttatcaggcctacaactattgccgacct	CRISPR spacer
gcagatgcctgatgcgacgctaacgcgtcttatcaggcctacaaattcccgcgccat	Protospacer
.. .*****************. ********************* * ..  ** * *

20. spacer 3.1|2811713|57|NZ_CP016358|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 14, identity: 0.754

atcaatgcctgatgcgacgctgtcgcgtcttatcaggcctacaactattgccgacct	CRISPR spacer
gcagatgcctgatgcgacgctaacgcgtcttatcaggcctacaaattctcgcgccac	Protospacer
.. .*****************. ********************* * .*  ** * .

21. spacer 3.1|2811713|57|NZ_CP016358|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 14, identity: 0.754

atcaatgcctgatgcgacgctgtcgcgtcttatcaggcctacaactattgccgacct	CRISPR spacer
gcagatgcctgatgcgacgctaacgcgtcttatcaggcctacaaattcccgcgccat	Protospacer
.. .*****************. ********************* * ..  ** * *

22. spacer 3.1|2811713|57|NZ_CP016358|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 14, identity: 0.754

atcaatgcctgatgcgacgctgtcgcgtcttatcaggcctacaa--ctattgccgacct	CRISPR spacer
gcagatgcctgatgcgacgctggcgcgtcttatcatgcctacaaacttgtgcctgaa--	Protospacer
.. .****************** ************ ********  .*.*  *.**   

23. spacer 3.1|2811713|57|NZ_CP016358|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 14, identity: 0.754

atcaatgcctgatgcgacgctgtcgcgtcttatcaggcctacaactattgccgacct	CRISPR spacer
gcagatgcctgatgcgacgctaacgcgtcttatcaggcctacaaattcccgcgccat	Protospacer
.. .*****************. ********************* * ..  ** * *

24. spacer 3.1|2811713|57|NZ_CP016358|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 14, identity: 0.754

atcaatgcctgatgcgacgctgtcgcgtcttatcaggcctacaactattgccgacct	CRISPR spacer
gcagatgcctgatgcgacgctaacgcgtcttatcaggcctacaaattctcgcgccac	Protospacer
.. .*****************. ********************* * .*  ** * .

25. spacer 3.1|2811713|57|NZ_CP016358|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 14, identity: 0.754

atcaatgcctgatgcgacgctgtcgcgtcttatcaggcctacaactattgccgacct	CRISPR spacer
gcagatgcctgatgcgacgctaacgcgtcttatcaggcctacaaattcccgcgccat	Protospacer
.. .*****************. ********************* * ..  ** * *

26. spacer 3.1|2811713|57|NZ_CP016358|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 14, identity: 0.754

atcaatgcctgatgcgacgctgtcgcgtcttatcaggcctacaa--ctattgccgacct	CRISPR spacer
gcagatgcctgatgcgacgctggcgcgtcttatcatgcctacaaacttgtgcctgaa--	Protospacer
.. .****************** ************ ********  .*.*  *.**   

27. spacer 3.1|2811713|57|NZ_CP016358|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 14, identity: 0.754

atcaatgcctgatgcgacgctgtcgcgtcttatcaggcctacaactattgccgacct	CRISPR spacer
gcagatgcctgatgcgacgctaacgcgtcttatcaggcctacaaattcccgcgccat	Protospacer
.. .*****************. ********************* * ..  ** * *

28. spacer 3.1|2811713|57|NZ_CP016358|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 14, identity: 0.754

atcaatgcctgatgcgacgctgtcgcgtcttatcaggcctacaactattgccgacct	CRISPR spacer
gcagatgcctgatgcgacgctaacgcgtcttatcaggcctacaaattctcgcgccac	Protospacer
.. .*****************. ********************* * .*  ** * .

29. spacer 3.1|2811713|57|NZ_CP016358|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 14, identity: 0.754

atcaatgcctgatgcgacgctgtcgcgtcttatcaggcctacaactattgccgacct	CRISPR spacer
gcagatgcctgatgcgacgctaacgcgtcttatcaggcctacaaattcccgcgccat	Protospacer
.. .*****************. ********************* * ..  ** * *

30. spacer 3.1|2811713|57|NZ_CP016358|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 14, identity: 0.754

atcaatgcctgatgcgacgctgtcgcgtcttatcaggcctacaa--ctattgccgacct	CRISPR spacer
gcagatgcctgatgcgacgctggcgcgtcttatcatgcctacaaacttgtgcctgaa--	Protospacer
.. .****************** ************ ********  .*.*  *.**   

31. spacer 3.1|2811713|57|NZ_CP016358|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 14, identity: 0.754

atcaatgcctgatgcgacgctgtcgcgtcttatcaggcctacaactattgccgacct	CRISPR spacer
gcagatgcctgatgcgacgctaacgcgtcttatcaggcctacaaattcccgcgccat	Protospacer
.. .*****************. ********************* * ..  ** * *

32. spacer 3.1|2811713|57|NZ_CP016358|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 14, identity: 0.754

atcaatgcctgatgcgacgctgtcgcgtcttatcaggcctacaactattgccgacct	CRISPR spacer
gcagatgcctgatgcgacgctaacgcgtcttatcaggcctacaaattctcgcgccac	Protospacer
.. .*****************. ********************* * .*  ** * .

33. spacer 3.1|2811713|57|NZ_CP016358|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 14, identity: 0.754

atcaatgcctgatgcgacgctgtcgcgtcttatcaggcctacaactattgccgacct	CRISPR spacer
gcagatgcctgatgcgacgctaacgcgtcttatcaggcctacaaattcccgcgccat	Protospacer
.. .*****************. ********************* * ..  ** * *

34. spacer 3.1|2811713|57|NZ_CP016358|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 14, identity: 0.754

atcaatgcctgatgcgacgctgtcgcgtcttatcaggcctacaa--ctattgccgacct	CRISPR spacer
gcagatgcctgatgcgacgctggcgcgtcttatcatgcctacaaacttgtgcctgaa--	Protospacer
.. .****************** ************ ********  .*.*  *.**   

35. spacer 3.1|2811713|57|NZ_CP016358|CRISPRCasFinder matches to NZ_CP044147 (Escherichia coli O157 strain AR-0428 plasmid pAR-0428-2) position: , mismatch: 14, identity: 0.754

atcaatgcctgatgcgacgctgtcgcgtcttatcaggcctac--aactattgccgacct	CRISPR spacer
ccggatgcctgatgcgacgctggcgcgtcttatcatgcctacaaaactgcactcaac--	Protospacer
 . .****************** ************ ******  ****..  .*.**  

36. spacer 3.1|2811713|57|NZ_CP016358|CRISPRCasFinder matches to CP044351 (Escherichia coli strain 194195 plasmid p194195_1, complete sequence) position: , mismatch: 14, identity: 0.754

atcaatgcctgatgcgacgctgtcgcgtcttatcaggcctac--aactattgccgacct	CRISPR spacer
ccggatgcctgatgcgacgctggcgcgtcttatcatgcctacaaaactgcactcaac--	Protospacer
 . .****************** ************ ******  ****..  .*.**  

37. spacer 2.1|2751081|63|NZ_CP016358|PILER-CR matches to NZ_AP023206 (Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence) position: , mismatch: 15, identity: 0.762

ttggtgcacgatgcctgatgcgacgctggcgcgtcttatcaggcctacattggtgccgga	CRISPR spacer
tcggtgcacgatgcctgatgcgacgctgccgcgtcttatcaggcctaca--------aaa	Protospacer
*.************************** ********************        ..*

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 2530796 : 2542358 13 Enterobacteria_phage(88.89%) integrase attL 2530614:2530636|attR 2541248:2541270
DBSCAN-SWA_2 2991020 : 3032458 62 Shigella_phage(41.82%) holin,integrase,head,protease,portal,terminase,plate,capsid,tail,tRNA attL 2985813:2985828|attR 3040394:3040409
DBSCAN-SWA_3 3481272 : 3557416 85 Enterobacteria_phage(43.4%) integrase,holin,protease,portal,terminase,lysis,tail,tRNA attL 3481023:3481042|attR 3526147:3526166
DBSCAN-SWA_4 3811421 : 3860761 46 Streptococcus_phage(22.22%) transposase,plate NA
DBSCAN-SWA_5 4500810 : 4508533 10 uncultured_Caudovirales_phage(50.0%) integrase attL 4494797:4494811|attR 4507137:4507151
DBSCAN-SWA_6 4759682 : 4804785 60 Enterobacteria_phage(55.77%) integrase,head,portal,terminase,lysis,capsid,tail,tRNA attL 4752317:4752332|attR 4811962:4811977
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage