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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP015763 Bordetella pertussis strain VA-52, complete genome 5 crisprs DEDDh,csa3,cas3,DinG 0 0 29 0

Results visualization

1. NZ_CP015763
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP015763_1 357127-357254 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP015763_2 1894740-1894849 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP015763_3 2268173-2268257 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP015763_4 3001728-3001821 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP015763_5 3566041-3566135 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 259340 : 317664 51 Klosneuvirus(13.33%) tRNA,transposase NA
DBSCAN-SWA_2 368913 : 428183 52 Klosneuvirus(40.0%) tRNA,protease,transposase NA
DBSCAN-SWA_3 438423 : 482746 46 Staphylococcus_phage(25.0%) transposase NA
DBSCAN-SWA_4 512519 : 576888 52 Vibrio_phage(20.0%) transposase NA
DBSCAN-SWA_5 763356 : 824704 52 Yellowstone_lake_phycodnavirus(12.5%) tRNA,transposase NA
DBSCAN-SWA_6 845495 : 916649 56 Tetraselmis_virus(10.0%) transposase NA
DBSCAN-SWA_7 1000849 : 1052015 47 Salmonella_phage(20.0%) tRNA,transposase NA
DBSCAN-SWA_8 1150310 : 1190979 45 Salmonella_phage(33.33%) tRNA,transposase NA
DBSCAN-SWA_9 1246444 : 1319314 59 Moraxella_phage(16.67%) tRNA,transposase NA
DBSCAN-SWA_10 1322457 : 1389271 50 uncultured_Mediterranean_phage(28.57%) protease,transposase NA
DBSCAN-SWA_11 1419657 : 1513694 92 Bacillus_virus(27.27%) transposase NA
DBSCAN-SWA_12 1844342 : 1898083 50 Staphylococcus_phage(33.33%) transposase NA
DBSCAN-SWA_13 1904238 : 1963538 48 Acinetobacter_phage(27.27%) tRNA,transposase NA
DBSCAN-SWA_14 1978476 : 2036549 47 Planktothrix_phage(12.5%) tRNA,transposase NA
DBSCAN-SWA_15 2046349 : 2117690 59 Paramecium_bursaria_Chlorella_virus(20.0%) tRNA,transposase NA
DBSCAN-SWA_16 2187512 : 2303182 105 Bacillus_phage(12.5%) tRNA,protease,transposase NA
DBSCAN-SWA_17 2343595 : 2411420 60 Bacillus_phage(22.22%) tRNA,transposase NA
DBSCAN-SWA_18 2439243 : 2475184 33 Sphingobium_phage(33.33%) transposase NA
DBSCAN-SWA_19 2529513 : 2596676 59 Planktothrix_phage(37.5%) tRNA,transposase NA
DBSCAN-SWA_20 2781487 : 2855831 56 uncultured_Mediterranean_phage(15.38%) transposase NA
DBSCAN-SWA_21 3160114 : 3221300 56 uncultured_Mediterranean_phage(40.0%) protease,transposase NA
DBSCAN-SWA_22 3226618 : 3272815 52 uncultured_Caudovirales_phage(17.39%) tRNA,tail,terminase,transposase NA
DBSCAN-SWA_23 3278981 : 3332911 49 Planktothrix_phage(50.0%) tRNA,transposase NA
DBSCAN-SWA_24 3455500 : 3523476 59 Bacillus_phage(33.33%) transposase NA
DBSCAN-SWA_25 3546654 : 3616921 57 Streptococcus_phage(14.29%) transposase NA
DBSCAN-SWA_26 3629139 : 3686521 48 uncultured_Mediterranean_phage(37.5%) tRNA,holin,transposase NA
DBSCAN-SWA_27 3721872 : 3787455 54 Erysipelothrix_phage(33.33%) tRNA,transposase NA
DBSCAN-SWA_28 3950020 : 4016520 56 uncultured_Caudovirales_phage(40.0%) transposase NA
DBSCAN-SWA_29 4044691 : 4083281 36 Emiliania_huxleyi_virus(14.29%) protease,transposase NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage