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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP015766 Bordetella pertussis strain VA-15, complete genome 4 crisprs DEDDh,csa3,cas3,DinG 0 0 26 0

Results visualization

1. NZ_CP015766
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP015766_1 1374144-1374260 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP015766_2 2087857-2087950 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP015766_3 2821407-2821491 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP015766_4 3194809-3194918 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 120284 : 189934 55 Staphylococcus_phage(16.67%) transposase,tRNA NA
DBSCAN-SWA_2 205483 : 251871 42 uncultured_Mediterranean_phage(20.0%) transposase NA
DBSCAN-SWA_3 263075 : 303764 37 Klosneuvirus(25.0%) protease,transposase,tRNA NA
DBSCAN-SWA_4 331544 : 397092 58 Lake_Baikal_phage(21.43%) protease,transposase,tRNA NA
DBSCAN-SWA_5 712735 : 774083 52 Yellowstone_lake_phycodnavirus(12.5%) transposase,tRNA NA
DBSCAN-SWA_6 794874 : 866028 56 Tetraselmis_virus(10.0%) transposase NA
DBSCAN-SWA_7 950225 : 1019580 60 Planktothrix_phage(33.33%) transposase,tRNA NA
DBSCAN-SWA_8 1073165 : 1139664 55 uncultured_Caudovirales_phage(40.0%) transposase NA
DBSCAN-SWA_9 1302226 : 1367810 53 Oenococcus_phage(33.33%) transposase,tRNA NA
DBSCAN-SWA_10 1385379 : 1445273 50 Catovirus(22.22%) holin,transposase,tRNA NA
DBSCAN-SWA_11 1450157 : 1585316 118 uncultured_Caudovirales_phage(10.53%) transposase,tRNA NA
DBSCAN-SWA_12 1698633 : 1767636 57 Klosneuvirus(16.67%) transposase NA
DBSCAN-SWA_13 1783081 : 1883192 109 uncultured_Caudovirales_phage(10.71%) terminase,protease,transposase,tRNA NA
DBSCAN-SWA_14 2169805 : 2302731 120 uncultured_Mediterranean_phage(10.34%) transposase,tRNA,integrase attL 2214448:2214465|attR 2259088:2259105
DBSCAN-SWA_15 2469891 : 2534801 59 Planktothrix_phage(40.0%) transposase NA
DBSCAN-SWA_16 2570819 : 2640853 59 Natrialba_phage(12.5%) transposase,tRNA NA
DBSCAN-SWA_17 2648451 : 2706925 54 Planktothrix_phage(22.22%) transposase,tRNA NA
DBSCAN-SWA_18 2735709 : 2796220 52 Diachasmimorpha_longicaudata_entomopoxvirus(11.11%) protease,transposase,tRNA NA
DBSCAN-SWA_19 2804152 : 2857736 46 Bacillus_phage(25.0%) protease,transposase,tRNA NA
DBSCAN-SWA_20 3126119 : 3185419 48 Acinetobacter_phage(27.27%) transposase,tRNA NA
DBSCAN-SWA_21 3191574 : 3245315 50 Salmonella_phage(33.33%) transposase NA
DBSCAN-SWA_22 3294202 : 3326012 23 Pseudomonas_phage(33.33%) transposase,protease,integrase,tRNA attL 3291501:3291519|attR 3311390:3311408
DBSCAN-SWA_23 3567603 : 3669995 96 Bacillus_virus(27.27%) transposase,tRNA NA
DBSCAN-SWA_24 3700380 : 3771346 48 uncultured_Mediterranean_phage(25.0%) protease,transposase NA
DBSCAN-SWA_25 3812416 : 3894549 60 Bacillus_virus(28.57%) transposase,tRNA NA
DBSCAN-SWA_26 3898660 : 3939329 45 Salmonella_phage(33.33%) transposase,tRNA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage