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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP015768 Bordetella pertussis strain VA-62, complete genome 4 crisprs cas3,DinG,csa3,DEDDh 0 0 31 0

Results visualization

1. NZ_CP015768
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP015768_1 228513-228606 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP015768_2 792827-792921 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP015768_3 3225821-3225930 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP015768_4 3599254-3599338 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 8273 : 82617 56 uncultured_Mediterranean_phage(15.38%) transposase NA
DBSCAN-SWA_2 386899 : 448089 56 uncultured_Mediterranean_phage(40.0%) transposase,protease NA
DBSCAN-SWA_3 453407 : 499604 52 uncultured_Caudovirales_phage(17.39%) transposase,terminase,tail,tRNA NA
DBSCAN-SWA_4 505770 : 559706 49 Planktothrix_phage(50.0%) transposase,tRNA NA
DBSCAN-SWA_5 682286 : 750262 59 Bacillus_phage(33.33%) transposase NA
DBSCAN-SWA_6 773440 : 843707 57 Streptococcus_phage(14.29%) transposase NA
DBSCAN-SWA_7 855925 : 913307 47 uncultured_Mediterranean_phage(37.5%) transposase,holin,tRNA NA
DBSCAN-SWA_8 1112329 : 1177758 58 Planktothrix_phage(33.33%) transposase NA
DBSCAN-SWA_9 1242356 : 1297844 56 Mollivirus(16.67%) transposase,protease NA
DBSCAN-SWA_10 1503009 : 1572661 56 Staphylococcus_phage(16.67%) transposase,tRNA NA
DBSCAN-SWA_11 1584157 : 1633553 45 Erysipelothrix_phage(16.67%) transposase NA
DBSCAN-SWA_12 1644757 : 1685448 37 Klosneuvirus(25.0%) transposase,tRNA,protease NA
DBSCAN-SWA_13 1713231 : 1778779 59 Lake_Baikal_phage(20.0%) transposase,tRNA,protease NA
DBSCAN-SWA_14 2094433 : 2155781 52 Yellowstone_lake_phycodnavirus(12.5%) transposase,tRNA NA
DBSCAN-SWA_15 2176572 : 2247726 56 Tetraselmis_virus(10.0%) transposase NA
DBSCAN-SWA_16 2331926 : 2394227 55 Salmonella_phage(18.18%) transposase,tRNA NA
DBSCAN-SWA_17 2480344 : 2521013 45 Salmonella_phage(33.33%) transposase,tRNA NA
DBSCAN-SWA_18 2576478 : 2649348 59 Moraxella_phage(16.67%) transposase,tRNA NA
DBSCAN-SWA_19 2652491 : 2719303 49 uncultured_Mediterranean_phage(28.57%) transposase,protease NA
DBSCAN-SWA_20 2749689 : 2843726 90 Bacillus_virus(27.27%) transposase NA
DBSCAN-SWA_21 2917012 : 2980846 58 Pseudomonas_phage(30.0%) transposase,tRNA,protease NA
DBSCAN-SWA_22 3028990 : 3043178 16 Erwinia_phage(100.0%) transposase,protease NA
DBSCAN-SWA_23 3061601 : 3113520 43 Tupanvirus(16.67%) transposase,holin,tRNA NA
DBSCAN-SWA_24 3175423 : 3229164 50 Staphylococcus_phage(33.33%) transposase NA
DBSCAN-SWA_25 3235319 : 3294619 48 Acinetobacter_phage(27.27%) transposase,tRNA NA
DBSCAN-SWA_26 3309557 : 3367630 47 Planktothrix_phage(12.5%) transposase,tRNA NA
DBSCAN-SWA_27 3377430 : 3448771 59 Paramecium_bursaria_Chlorella_virus(20.0%) transposase,tRNA NA
DBSCAN-SWA_28 3518593 : 3634264 104 Bacillus_phage(12.5%) transposase,tRNA,protease NA
DBSCAN-SWA_29 3674677 : 3742502 60 Bacillus_phage(22.22%) transposase,tRNA NA
DBSCAN-SWA_30 3770325 : 3807315 33 Sphingobium_phage(33.33%) transposase NA
DBSCAN-SWA_31 3861644 : 3928807 59 Planktothrix_phage(37.5%) transposase,tRNA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage