CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Target MGE spacer number	Prophage number
NZ_CP014597	Yangia sp. CCB-MM3 plasmid unnamed1, complete sequence	1 crisprs	cas7,cas8c,cas5,DEDDh	3	3
NZ_CP014595	Yangia sp. CCB-MM3 chromosome 1, complete sequence	4 crisprs	csa3,cas3,DEDDh	0	1
NZ_CP014598	Yangia sp. CCB-MM3 plasmid unnamed2, complete sequence	0 crisprs	NA	0	0
NZ_CP014601	Yangia sp. CCB-MM3 plasmid unnamed5, complete sequence	0 crisprs	NA	0	0
NZ_CP014596	Yangia sp. CCB-MM3 chromosome 2, complete sequence	0 crisprs	cas3	0	2
NZ_CP014599	Yangia sp. CCB-MM3 plasmid unnamed3, complete sequence	0 crisprs	NA	0	0
NZ_CP014600	Yangia sp. CCB-MM3 plasmid unnamed4, complete sequence	1 crisprs	NA	2	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP014597_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP014597_1

132627-132797

Orphan

Consensus_repeat	Method
CTCCTCCAATGTTGACACC	CRT

3 spacers

The CRISPR arrays of NZ_CP014597_1

>merge|NZ_CP014597|1|132627-132797|CRT
CTCCTCCAATGTTGACACCCCCAGCCCCGCTGACGCCAGGCTCCCAACATCTTCCAATGTTGACACCAAACAAGCCCGCCCCGCCGGCCGCGGCTCAGGCTCCTCCAATGTTGACACATCTGGCCCCTCCTCCGCCAAGGCGCGGCCTCCGACAGCTCCAATGTTGACACC

>NZ_CP014597|1|1|132627-132797|CRT
CTCCTCCAATGTTGACACC	CCCAGCCCCGCTGACGCCAGGCTCCCAAC
ATCTTCCAATGTTGACACC	AAACAAGCCCGCCCCGCCGGCCGCGGCTCAGG
CTCCTCCAATGTTGACACA	TCTGGCCCCTCCTCCGCCAAGGCGCGGCCTCCGA
CAGCTCCAATGTTGACACC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP014597.1\|WP_066110692.1\|139675_140029_-\|STAS-domain-containing-protein	unknown	unknown	gnl\|CDD\|132912
NZ_CP014597.1\|WP_066110694.1\|140030_140906_-\|STAS-domain-containing-protein	unknown	unknown	gnl\|CDD\|132912
NZ_CP014597.1\|WP_066110668.1\|121791_124617_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP014597.1\|WP_066110696.1\|141426_141795_-\|response-regulator	unknown	unknown	gnl\|CDD\|381122
NZ_CP014597.1\|WP_083191425.1\|130339_131299_-\|Fic-family-protein	unknown	unknown	gnl\|CDD\|225718
NZ_CP014597.1\|WP_083191427.1\|137123_138260_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226434
NZ_CP014597.1\|WP_066110685.1\|134283_135213_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP014597.1\|WP_157374336.1\|132947_134099_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP014597.1\|WP_066110698.1\|142356_142923_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP014597.1\|WP_083191428.1\|139263_139581_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|340411
NZ_CP014597.1\|WP_066110673.1\|126078_126993_+\|porin	unknown	unknown	gnl\|CDD\|275096
NZ_CP014597.1\|WP_066110675.1\|127571_128969_+\|PAS-domain-containing-protein	unknown	unknown	gnl\|CDD\|226434
NZ_CP014597.1\|WP_066110660.1\|120053_120731_-\|HDIG-domain-containing-protein	unknown	unknown	gnl\|CDD\|131739
NZ_CP014597.1\|WP_157374335.1\|129743_130211_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP014597.1\|WP_157374334.1\|121422_121770_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP014597.1\|WP_066110662.1\|121057_121417_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP014597.1\|WP_066110690.1\|138256_139267_-\|SpoIIE-family-protein-phosphatase	unknown	unknown	gnl\|CDD\|340411
NZ_CP014597.1\|WP_066110688.1\|136076_136736_+\|class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|379312
NZ_CP014597.1\|WP_066111034.1\|129048_129705_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP014597.1\|WP_066110670.1\|124682_125432_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP014597.1\|WP_066110692.1\|139675_140029_-\|STAS-domain-containing-protein	gnl\|CDD\|132912	cd07041, STAS_RsbR_RsbS_like, Sulphate Transporter and Anti-Sigma factor antagonist domain of the "stressosome" complex proteins RsbS and RsbR, regulators of the bacterial stress activated alternative sigma factor sigma-B by phosphorylation. The STAS (Sulphate Transporter and Anti-Sigma factor antagonist) domain of proteins related to RsbS and RsbR which are part of the "stressosome" complex that plays an important role in the regulation of the bacterial stress activated alternative sigma factor sigma-B. During stress conditions RsbS and RsbR are phosphorylated which leads to the release of RsbT, an activator of of the RsbU phosphatase, which in turn activates RsbV which leads to the release and activation of sigma factor B. RsbS is a single domain protein (STAS domain), while RsbR-like proteins have a well-conserved C-terminal STATS domain and a variable N-terminal domain. The STAS domain is also found in the C- terminal region of sulphate transporters and anti-anti-sigma factors.	2.97731e-25
NZ_CP014597.1\|WP_066110673.1\|126078_126993_+\|porin	gnl\|CDD\|275096	TIGR04273, activator_of_XA21-mediated_immunity_Ax21, sulfation-dependent quorum factor, Ax21 family. This family consists of proteins closely related to Ax21 (Activator of XA21-mediated immunity), a protein that is secreted by a type I secretion system (RaxABC), and that appears to be sulfated on an N-terminal region tryosine in a motif LSYN. Ax21 acts in a quorum-sensing system. Homologous peptide-mediated quorum-sensing systems appear to exist in other species, such as the emerging opportunistic pathogen Stenotrophomonas maltophilia. Intriguingly, the rice genome encodes a receptor (XA21) for this protein that triggers innate immunity. [Cellular processes, Pathogenesis].	0.000284453
NZ_CP014597.1\|WP_066110675.1\|127571_128969_+\|PAS-domain-containing-protein	gnl\|CDD\|226434	COG3920, COG3920, Signal transduction histidine kinase [Signal transduction mechanisms].	9.37683e-53
NZ_CP014597.1\|WP_066110660.1\|120053_120731_-\|HDIG-domain-containing-protein	gnl\|CDD\|131739	TIGR02692, putative_tRNA_nucleotidyltransferase, tRNA adenylyltransferase. The enzyme tRNA adenylyltransferase, also called tRNA-nucleotidyltransferase and CCA-adding enzyme, can add or repair the required CCA triplet at the 3'-end of tRNA molecules. Genes encoding tRNA include the CCA tail in some but not all bacteria, and this enzyme may be required for viability. Members of this family represent a distinct clade within the larger family pfam01743 (tRNA nucleotidyltransferase/poly(A) polymerase family protein). The example from Streptomyces coelicolor was shown to act as a CCA-adding enzyme and not as a poly(A) polymerase. [Protein synthesis, tRNA and rRNA base modification].	3.27587e-09
NZ_CP014597.1\|WP_066110694.1\|140030_140906_-\|STAS-domain-containing-protein	gnl\|CDD\|132912	cd07041, STAS_RsbR_RsbS_like, Sulphate Transporter and Anti-Sigma factor antagonist domain of the "stressosome" complex proteins RsbS and RsbR, regulators of the bacterial stress activated alternative sigma factor sigma-B by phosphorylation. The STAS (Sulphate Transporter and Anti-Sigma factor antagonist) domain of proteins related to RsbS and RsbR which are part of the "stressosome" complex that plays an important role in the regulation of the bacterial stress activated alternative sigma factor sigma-B. During stress conditions RsbS and RsbR are phosphorylated which leads to the release of RsbT, an activator of of the RsbU phosphatase, which in turn activates RsbV which leads to the release and activation of sigma factor B. RsbS is a single domain protein (STAS domain), while RsbR-like proteins have a well-conserved C-terminal STATS domain and a variable N-terminal domain. The STAS domain is also found in the C- terminal region of sulphate transporters and anti-anti-sigma factors.	8.26948e-43
NZ_CP014597.1\|WP_083191427.1\|137123_138260_-\|hypothetical-protein	gnl\|CDD\|226434	COG3920, COG3920, Signal transduction histidine kinase [Signal transduction mechanisms].	3.52464e-35
NZ_CP014597.1\|WP_066110696.1\|141426_141795_-\|response-regulator	gnl\|CDD\|381122	cd17586, REC_PFxFATGY, phosphoacceptor receiver (REC) domain of PFxFATGY motif single-domain (stand-alone) response regulators. This subfamily is composed of stand-alone response regulators (RRs) containing the PFxFATG[G/Y] motif; RRs with such a motif are also called ''FAT GUY'' response regulators. Included in this subfamily are Sphingomonas melonis SdrG, Sinorhizobium meliloti Sma0114, and Erythrobacter litoralis EL_LovR. SdrG is involved in the control of the general stress response. Sma0114 is part of the Sma0113/Sma0114 two-component system (TCS) that is involved in catabolite repression and polyhydroxy butyrate synthesis. EL_LovR is involved in a light-regulated TCS. PFxFATG[G/Y] RRs are typically associated with histidine-tryptophan-glutamate (HWE) histidine kinases that constitute a subclass of the larger histidine kinase superfamily characterized by an altered ATP binding site, which lacks the F-box that is normally an integral component of the ATP lid. The PFxFATG[G/Y] motif is involved in conformational changes after phosphorylation that results in the activation of the RR. REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays.	9.1055e-19
NZ_CP014597.1\|WP_083191425.1\|130339_131299_-\|Fic-family-protein	gnl\|CDD\|225718	COG3177, COG3177, Fic family protein [Function unknown].	5.85461e-24
NZ_CP014597.1\|WP_066110690.1\|138256_139267_-\|SpoIIE-family-protein-phosphatase	gnl\|CDD\|340411	cd16934, HATPase_RsbT-like, Histidine kinase-like ATPase domain of the anti sigma-B factor Bacillus subtilis serine/threonine-protein kinase RsbT, and related domains. This family includes the histidine kinase-like ATPase (HATPase) domain of Bacillus subtilis serine/threonine-protein kinase RsbT, a component of the stressosome signaling complex of Bacillus subtilis. The stressosome is formed from multiple copies of three proteins, a sensor protein RsbR, a scaffold protein RsbS, and RsbT, and responds to environmental changes by initiating a protein partner switching cascade. Stress perception increases the phosphorylation of RsbR and RsbS, by RsbT. Subsequent dissociation of RsbT from the stressosome activates the sigma-B cascade, leading to the release of the alternative sigma factor, sigma-B.	6.76196e-28
NZ_CP014597.1\|WP_066110688.1\|136076_136736_+\|class-I-SAM-dependent-methyltransferase	gnl\|CDD\|379312	pfam13649, Methyltransf_25, Methyltransferase domain. This family appears to be a methyltransferase domain.	9.67567e-21
NZ_CP014597.1\|WP_083191428.1\|139263_139581_-\|hypothetical-protein	gnl\|CDD\|340411	cd16934, HATPase_RsbT-like, Histidine kinase-like ATPase domain of the anti sigma-B factor Bacillus subtilis serine/threonine-protein kinase RsbT, and related domains. This family includes the histidine kinase-like ATPase (HATPase) domain of Bacillus subtilis serine/threonine-protein kinase RsbT, a component of the stressosome signaling complex of Bacillus subtilis. The stressosome is formed from multiple copies of three proteins, a sensor protein RsbR, a scaffold protein RsbS, and RsbT, and responds to environmental changes by initiating a protein partner switching cascade. Stress perception increases the phosphorylation of RsbR and RsbS, by RsbT. Subsequent dissociation of RsbT from the stressosome activates the sigma-B cascade, leading to the release of the alternative sigma factor, sigma-B.	1.22605e-25

>NZ_CP014597.1|WP_083191425.1|130339_131299_-|Fic-family-protein
MLKGRERGRRDVMETPGRMEPCGLEEEIPERLELAVDLALMLQKAVRPAPSSAELEHERREVRVMNAHFSLKLEGIDVPIFLITRALSGESLHGREADLAQAAIAHIDVEAWIDDLHDRGQLPAPTDADFLREVHRKLYYGMPVSMRELDDQDVIPGEYRLFHVSVGRHLPPSPHCVPDFMAHFQKRYRGLTSGDRGKVLAIPAAHHRFSYIHPFQDGNGRVARLMTHAMMLRAGLCNRSPWSISYALCEGQNQDRRYHEEMALADTPRQGDRDGRGNLSLCYLEHFTEWFLEQILCEISDTIGTGHASPENLVEAAAE
>NZ_CP014597.1|WP_157374335.1|129743_130211_-|hypothetical-protein
MQKWAIFTAAMAMAAPVPVFAENFGEEYLASTKLGRDLTTRGKSSVSMVTINECKLSYVLQAMGTCEASGDLKSESADINLRSVGKLSAQVDGETTEFILSGRPDISSLTSETITLCGGNVHRRSSLSEATFTIPELVGQTVFDELDDYIKTYCE
>NZ_CP014597.1|WP_066111034.1|129048_129705_+|hypothetical-protein
MLCTAVLLLPMRAEADLLCPGTLVTARAPAESAVEERICAVVVEAAAQLNTCGLPITRPVQILVIDGSLGDGCVGLYHCGEDLIEVLAPDRLEANRSRDGIFDAVPTDRFFDSIIVHELAHAAHDALPCPSGLCLATSEYLAYNSQIMSLEPDDQRAVMARIDMEETVKHDEVNAAILFFKPNVFAARAWAHLNQRDDPCEYLRHVANGVFTFDRERP
>NZ_CP014597.1|WP_066110675.1|127571_128969_+|PAS-domain-containing-protein
MDTANDAQWAGIAGVGSYTWWIEDDALEWSAGLLALYGRTSPPENITAFVKLIHPDDRPRIREELESVLASDRDYQSEFRILLPNGQERIVLDRGVVLRDTTGKPVAVKGLETDTTFAGRHASTPSADNDAFRALEMRVTRADAVLKTVFDAAPVGLGVWDRDFRFVHINRKLAEMNGLPAAAHIGRTVQEMLPDLDDHAGIHEIWTQVLETGEPKSDIEVSGTTPANPGVTRHWREHFFPVTSPDGVIGVAAIAEDVTESKRATQQIDTLLRELNHRSKNMLTLISAIARQTARSHPDDFLKHFQDRLSAMAAAQDLLLTGTAGVVDMEELMHSQLRPVIEAAEARVSLSGDGPITIAASKAQTLGLALHELATNAMKYGSLSEEDGELAVSWSLGPDGTITVEWKERLGPIVAPPKARGFGTKLIETMVPSLIDGNAVTNYDPEGLSWTLTFGADPTIQSPIE
>NZ_CP014597.1|WP_066110673.1|126078_126993_+|porin
MNNRFVSALALTAALLPVGAASAAEYSAAATLGYAHSDLEGLELDTTSLDLSLDAQATEALSFGIDVALSKSKPEDGEDFNLPSFMADMEYRFGNGFSAGIYAERFTLDTDLLLGTDIDFDSYGVTAGYARANYKVEAFYGETVTDPELDDVTIQDFGILAAMAPNSQSSIAARYVRSNAETDGTNEDWEAIELAGTYQINDPWAVFAGASFGQIDSLSLDVDTYGFGVSYNLDAVSEIPATLSLELARTTLDVDGYGGDADTVRVGVTFPLGAGGAKLPLNSVAGAVQNGRHSALSSAALAAF
>NZ_CP014597.1|WP_066110670.1|124682_125432_-|hypothetical-protein
MTRRLVNLGHGFWNVRCTMKIGGILNIGTHVSIVRKKSGRFLILDSYTLNGEIKDQVMGLTDDGRLVDAVLNLHPFHTLHCDAMARDFPGAKFYGSERHRRVCPGVPWEGEAVESPEVVGQFEEDLLFSLPQGIDYISADESVHAGSLLAYHPESGALHVDDTFNVLPVPPVLRRRIPKLLLHPTLKKALKTHDGALDEFCSWLEALGRDWEGVAALCAAHNGVQRFSKGEFTRATERASHRINEKLAA
>NZ_CP014597.1|WP_066110668.1|121791_124617_-|hypothetical-protein
MSMQPRNRFANYQPRKGLAGRFFEKLGIQEFLWEQSRENEYALAFLSGKTGIGKTAFLEDIRAEMKQERLDHKTEWAVGHVDFKDPERRTPERALAQIRVSLASEHLAAFPCFDAALAILFKESNPHKDIQEEYPRIYNSQFNEIGDELLSWVGDRELVKETMGDLIGEIPGAKFLKSTVLKLAEAAVKKIKTHDVKVDLARLQKMPNTQIRELLPDILALDIQRLKTRRPELTIAFMVDSLEQLGDDQWLRDLIQETKGTQWIISGKEIPAWEDHGFDNVTGLLTKLHPVYDHEVETYLEDAGIVDETAKRLIVKISSGFPPHFELLKNRYLDYGGDKNRLVALKAMGEAATSEIDPLVFMSATERNRLGLLSLVMPIDEETYNFLKIEYPSYVGAADWETFSTSSQICERAGGMASVTDEVREALLRDFEGREPKICERASGQLEKHFAERVEAAEVVDQTRLRIMQVQILRYTDPRGYRNAYKALAEDFLADRDFSSIKELRERQAFDAANSIWNKPRENERIREADLYGKALNLWLDAKVALSMFPPQTRDAYLAWESLHKLVENSSLNDPALRAEMGILTGDTRALTGIGDLAAEVATKAQLSGPEIGIEPEKLAPVRDLEMALCGRDWDWDGAIMAAGKVHKLGLPGDVQTDIEDLLKILRQREFRVSQNCLDRGSLERYVVPRGRQIVLSGPDEYYGEPRPVVMPALDRIKKISNILGDGASQKFEIALMQAEAKRVKEDYVRAESAYMRAYDIAGNDMQRLKALQQRAHGIAITGDNNFAPPRLKALAVFASDEGNDLPNDARADSFQKITDMRLKVGHHPRCGLGDLDRALRYARWAPDVTHELCANIINQSMRTIRAIPSEPDQHGIDYWKEQIPYLTILRDDLAEGGASAIQSRPRTREEVFAKMERDRQIAEEKAAQPEETPEDWEIRF
>NZ_CP014597.1|WP_157374334.1|121422_121770_+|hypothetical-protein
MSRAKTPAQTLEAMIDCCHALKDSDVLRMALPGHGVTLNFLTHRLDRHIAEENAEPTDYRLKGITETLREAHELLELWEPKEQSVEATLRYMAVFLIETSNKPAFRPALPRAPTM
>NZ_CP014597.1|WP_066110662.1|121057_121417_+|hypothetical-protein
MNDDITAHEIAQENTERLGELFEMLREVREKGLIYWEPNTSRGADNLREMLAGIDRFMAAAVHDVDQAIDKTTELLRDARDNGLIYWEPNTDRGAERKSDMVARIDALIEPAPAPGPRM
>NZ_CP014597.1|WP_066110660.1|120053_120731_-|HDIG-domain-containing-protein
MRTSFQHLRSLAPTASGDFMIDWPGIEAILFDEFEAMRSTEQSPLHHAEGDVLTHTKLVVESLVADEAWRGLPENRREMLFWTAVLHDVGKPATTVYDEDGRISSRGHSRTGMNIARRFLMEAGAQFRWREEVCGLIEHHQAPFWLLERDDPEKKAIEISLTCNTADLCLHARHDIHGRICQDAQRVLDNIDLAEMMFSESGCLGVPRDFPNDTTRLEYLEKQDR
>NZ_CP014597.1|WP_157374336.1|132947_134099_+|hypothetical-protein
MLARVKASKKKLEAAHKDLDQSDGATPSMKSPSAQARENTTVSKATSSQYLDRGRMLINRYKRQQGLPQDYDDFSATEFVAWLISNKPDLKSSTWRVYRQAAYHTLMGKPDPDIDVALDMLDNDIVEGDEASGKRSGKQDRLAKRTSAMKEKKFPKAEMDMVFAYLQYKSRSKMAPILRDWLEATVHTGLRPVEWRATAFQSYQDPKTKRRYCWLYVLNAKATNARGNGVVRTLDLSELPSPIMNAVARMSSRGLEWHEEGRFDNVKSQVGQLLYTIGEDIFPRRKKHFSLYSCRHQFVANMKSVLEPAEVSALSGHVVTRTAREFYGRAQSAWGIDDIGPHARPIAEEVATVQQSADFYEARIENLKLAGVLHGNTNSEFPS
>NZ_CP014597.1|WP_066110685.1|134283_135213_+|hypothetical-protein
MSTSQILRAFLIAACSSLSFTAQAEVPANIRIGLGHQVITTGGRVSLDEFLELNRDGADPANLMSLSESLRPCQKPGYIVDIGGVPVPDERAFEEIVRLSALFAGSAHITCEIGAQRASAVVNPVIETRGATGDWLIDVKPSPDVLSDLLALSMETAVDYGINMGEWRTGDDPDKIVFLENGRESSAYEVRDDHFVGSLFGEDAEDQQLLVEIVKAMGHEPKVVTKLAPDDFPVEITFSAIDPFTFFLDLRNHLGNLFALRFVHSNYHMIATGHDLDRMEGKSNGPEPTRQQILEEALRNFEKLAELAK
>NZ_CP014597.1|WP_066110688.1|136076_136736_+|class-I-SAM-dependent-methyltransferase
MTKDDDTKNQDTQAFDLKSGSTDAKTISAYYDKWASTYDETLNSWNYRTPSDAAKLLAPELEPGAFVLDVGCGTGLFGDALARGGDFRIMGMDISRGSIEMAKSRWLYDGFIEHDLQNRPLPVLDNAMDAAACVGVLTYVEDAGALLQDICRCVRPGGSVIFTQRTDRWEMLDFGKTVTAMEDADIWDVVKITDPMNYLPGHEDFGDEIKVHHVLCKVL
>NZ_CP014597.1|WP_083191427.1|137123_138260_-|hypothetical-protein
MKSSKLTTVVLEKSEDISRLREVSRVLSGVLNFRDFERTRAVTAVVELGRNAIEHGHRGKATFSIVEFRGRPALGVTVSDQGTGIPDQYLDPEGASSSSTGMGLGLRGVQRIASRFDVKTGSEGTRIDAAFQSADCKVDCSNLVDKAALALAELKSKDPAAELAEKNRELTESLADHELLMQELHHRTGNNLALIVALVRMSKSQAEADETKQVLGELEIRVGSLAKAHELMQRAAASGEIDLNEMLSEVARNAERAFSGDSLRVDIKVNCGPLRMESKLAIDIGLIVGELVTNAYKYAFVGRDTGTITCTVSGDFETGLMMMVSDNGVGLPDGAERPERSNSLGWRMIRTLTFQHDATLTVDGSDGLSVNVKFPPKL
>NZ_CP014597.1|WP_066110690.1|138256_139267_-|SpoIIE-family-protein-phosphatase
MNQWVEIDDRSAVAVVRRLARRHGQEIGLSEVRIDELAIVATEATTNILRYADRGRALIDVVQRGGQKSVALVFTDKGPGISDADRMFQDGESSTDSAGLGLGAIRRLSDTFDIFSSPDFGTTIVCTFSAAAGPTAPGIELAGLRVCHPLEQQCGDDFLIRETKGATDILMCDGLGHGPDAAAASEEVFEAAWAAGGLSAEPGQTMRQITEKLVGRRGAVAAIVHVAQPQMVMSYAGLGNISTIRIGETGVQRMAVRDGRIGAGPTRGYEETLELMANDLVILHSDGLKTLREAHFPPGLLRKSPLLIAGFFLDRAFRGRDDASIIVLRVTQEPER
>NZ_CP014597.1|WP_083191428.1|139263_139581_-|hypothetical-protein
MKDRGASTLRVTRFATAVSEIARNAIVHGGGGEISIYLDKRNEYLVVECRDKGPGIEDISLAMSDGYTSRGGLGRGLGGAKRLSHGFDIRSTPGEGTIVSMSVKL
>NZ_CP014597.1|WP_066110692.1|139675_140029_-|STAS-domain-containing-protein
MSGVTSINLVENALLVSIQDDVTDTEIVDLQETLSNRIAKDDVKGVILDISALEIVDTFVGRVIAQLAGISRLLAAETYVVGMRPAVAVTLVELGMYLPEVRTALSLTHALSQLRRD
>NZ_CP014597.1|WP_066110694.1|140030_140906_-|STAS-domain-containing-protein
MPQSATANILTILDNDFSGVVEEWLGTQVKEGVKRSDLFSDAESRTQNQELLKAFSKGVRSGVANEEFSLDDDEWADLRAVLADVSKERVSRGVTPTEMATFVLALKAPLFKRLEAMPDVEQSILIRDVLLVTRLVDAFAIYTNEIFIAERDQIIERQRQEMLELSTPVVELWDRVLTLPLIGTLDSARAQEVMENLLQTILERQAEVVIMDITGVGTVDTQVAQHLLRAAAAVRLMGAECIISGISPMIAQTMVQLGIDVGTVSTRSSIRTALSDALLKVGYVIKTTEAS
>NZ_CP014597.1|WP_066110696.1|141426_141795_-|response-regulator
MTKVLICEDEALVALDLQMILEDAGFDVVGSYPSVSKAMSALALMKPDLAVLDVRLADGEVFPVADQLKEMGVGIIFHSGHLVKGDITNTFPDAECCMKPVAPGTLIGALKRLQTLDPALPG
>NZ_CP014597.1|WP_066110698.1|142356_142923_-|hypothetical-protein
MLAFDEMICSLQTIAAVRPGHFKETTTLDYVISPQMIDGCVLSRFLQTHFDRTEEEIVRLVRFDGSSTLGEMYEILSQPLDENSENYRGENTKGRRRWEPPFFHEFVASIERLAKKERRTYRYNTRVSEVISPDAIASQQFMDFLTSSFRMTERDIDTTVVRMDRDTTLRQLYVQLRGAHLPWFANER

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP014597_1	1.1\|132646\|29\|NZ_CP014597\|CRT	132646-132674	29	NZ_CP014597	Yangia sp. CCB-MM3 plasmid unnamed1, complete sequence	132646-132674	0	1.0
NZ_CP014597_1	1.2\|132694\|32\|NZ_CP014597\|CRT	132694-132725	32	NZ_CP014597	Yangia sp. CCB-MM3 plasmid unnamed1, complete sequence	132694-132725	0	1.0
NZ_CP014597_1	1.3\|132745\|34\|NZ_CP014597\|CRT	132745-132778	34	NZ_CP014597	Yangia sp. CCB-MM3 plasmid unnamed1, complete sequence	132745-132778	0	1.0
NZ_CP014597_1	1.1\|132646\|29\|NZ_CP014597\|CRT	132646-132674	29	NZ_CP029356	Azospirillum sp. CFH 70021 plasmid unnamed1	494482-494510	7	0.759
NZ_CP014597_1	1.2\|132694\|32\|NZ_CP014597\|CRT	132694-132725	32	NZ_CP032346	Azospirillum brasilense strain MTCC4039 plasmid p1, complete sequence	1502457-1502488	7	0.781
NZ_CP014597_1	1.2\|132694\|32\|NZ_CP014597\|CRT	132694-132725	32	MN369761	Mycobacterium phage Malthus, complete genome	27400-27431	8	0.75
NZ_CP014597_1	1.2\|132694\|32\|NZ_CP014597\|CRT	132694-132725	32	AP018469	Mycobacterium phage Y10 DNA, complete genome, note: sample1	27476-27507	8	0.75
NZ_CP014597_1	1.2\|132694\|32\|NZ_CP014597\|CRT	132694-132725	32	AP018470	Mycobacterium phage Y2 DNA, complete genome	27476-27507	8	0.75
NZ_CP014597_1	1.2\|132694\|32\|NZ_CP014597\|CRT	132694-132725	32	MH727561	Mycobacterium phage Serendipitous, complete genome	10891-10922	8	0.75
NZ_CP014597_1	1.2\|132694\|32\|NZ_CP014597\|CRT	132694-132725	32	MT310882	Mycobacterium phage JF1, complete genome	27476-27507	8	0.75
NZ_CP014597_1	1.2\|132694\|32\|NZ_CP014597\|CRT	132694-132725	32	AP018471	Mycobacterium phage Y10 DNA, complete genome, note: sample2	27476-27507	8	0.75
NZ_CP014597_1	1.2\|132694\|32\|NZ_CP014597\|CRT	132694-132725	32	MF140435	Mycobacterium phage Wintermute, complete genome	27476-27507	8	0.75
NZ_CP014597_1	1.2\|132694\|32\|NZ_CP014597\|CRT	132694-132725	32	NC_027365	Mycobacterium virus Fionnbarth, complete genome	27477-27508	8	0.75
NZ_CP014597_1	1.2\|132694\|32\|NZ_CP014597\|CRT	132694-132725	32	NZ_CP032322	Azospirillum brasilense strain MTCC4035 plasmid p1, complete sequence	1574188-1574219	8	0.75
NZ_CP014597_1	1.2\|132694\|32\|NZ_CP014597\|CRT	132694-132725	32	NZ_CP007794	Azospirillum brasilense strain Az39 plasmid AbAZ39_p1, complete sequence	1477126-1477157	8	0.75
NZ_CP014597_1	1.2\|132694\|32\|NZ_CP014597\|CRT	132694-132725	32	NZ_CP032340	Azospirillum brasilense strain MTCC4038 plasmid p1, complete sequence	319279-319310	8	0.75
NZ_CP014597_1	1.2\|132694\|32\|NZ_CP014597\|CRT	132694-132725	32	NZ_CP012915	Azospirillum brasilense strain Sp 7 plasmid ABSP7_p1, complete sequence	66728-66759	8	0.75
NZ_CP014597_1	1.2\|132694\|32\|NZ_CP014597\|CRT	132694-132725	32	NZ_CP029356	Azospirillum sp. CFH 70021 plasmid unnamed1	313804-313835	8	0.75
NZ_CP014597_1	1.2\|132694\|32\|NZ_CP014597\|CRT	132694-132725	32	NZ_CP029356	Azospirillum sp. CFH 70021 plasmid unnamed1	500885-500916	8	0.75
NZ_CP014597_1	1.2\|132694\|32\|NZ_CP014597\|CRT	132694-132725	32	NZ_CP012399	Chelatococcus sp. CO-6 plasmid pCO-6, complete sequence	449225-449256	8	0.75
NZ_CP014597_1	1.2\|132694\|32\|NZ_CP014597\|CRT	132694-132725	32	KY555147	Caulobacter phage Ccr34, complete genome	115811-115842	8	0.75
NZ_CP014597_1	1.2\|132694\|32\|NZ_CP014597\|CRT	132694-132725	32	KY555145	Caulobacter phage Ccr29, complete genome	119724-119755	8	0.75
NZ_CP014597_1	1.2\|132694\|32\|NZ_CP014597\|CRT	132694-132725	32	KY555143	Caulobacter phage Ccr2, complete genome	115191-115222	8	0.75
NZ_CP014597_1	1.2\|132694\|32\|NZ_CP014597\|CRT	132694-132725	32	MH744418	Streptomyces phage JustBecause, complete genome	103527-103558	8	0.75
NZ_CP014597_1	1.2\|132694\|32\|NZ_CP014597\|CRT	132694-132725	32	NC_019410	Caulobacter phage CcrKarma, complete genome	115901-115932	8	0.75
NZ_CP014597_1	1.2\|132694\|32\|NZ_CP014597\|CRT	132694-132725	32	KY555146	Caulobacter phage Ccr32, complete genome	115371-115402	8	0.75
NZ_CP014597_1	1.2\|132694\|32\|NZ_CP014597\|CRT	132694-132725	32	NC_019407	Caulobacter phage CcrMagneto, complete genome	114089-114120	8	0.75
NZ_CP014597_1	1.2\|132694\|32\|NZ_CP014597\|CRT	132694-132725	32	KY555144	Caulobacter phage Ccr5, complete genome	115080-115111	8	0.75
NZ_CP014597_1	1.2\|132694\|32\|NZ_CP014597\|CRT	132694-132725	32	JX163858	Caulobacter phage phiCbK, complete genome	92458-92489	8	0.75
NZ_CP014597_1	1.2\|132694\|32\|NZ_CP014597\|CRT	132694-132725	32	KY555142	Caulobacter phage Ccr10, complete genome	114716-114747	8	0.75
NZ_CP014597_1	1.2\|132694\|32\|NZ_CP014597\|CRT	132694-132725	32	MT310898	Streptomyces phage Kela, complete genome	103401-103432	8	0.75
NZ_CP014597_1	1.2\|132694\|32\|NZ_CP014597\|CRT	132694-132725	32	NC_019411	Caulobacter phage CcrSwift, complete genome	114668-114699	8	0.75
NZ_CP014597_1	1.2\|132694\|32\|NZ_CP014597\|CRT	132694-132725	32	NZ_CP035420	Leisingera sp. NJS204 plasmid unnamed3, complete sequence	99182-99213	9	0.719
NZ_CP014597_1	1.2\|132694\|32\|NZ_CP014597\|CRT	132694-132725	32	NZ_CP028969	Aminobacter sp. MSH1 plasmid pUSP1, complete sequence	263924-263955	9	0.719
NZ_CP014597_1	1.2\|132694\|32\|NZ_CP014597\|CRT	132694-132725	32	NZ_CP032325	Azospirillum brasilense strain MTCC4035 plasmid p4, complete sequence	264781-264812	9	0.719
NZ_CP014597_1	1.2\|132694\|32\|NZ_CP014597\|CRT	132694-132725	32	NZ_CP026266	Aminobacter sp. MSH1 plasmid pAM01, complete sequence	261201-261232	9	0.719
NZ_CP014597_1	1.2\|132694\|32\|NZ_CP014597\|CRT	132694-132725	32	NZ_CP022369	Azospirillum sp. TSH58 plasmid TSH58_p05, complete sequence	355802-355833	9	0.719
NZ_CP014597_1	1.2\|132694\|32\|NZ_CP014597\|CRT	132694-132725	32	NZ_CP007796	Azospirillum brasilense strain Az39 plasmid AbAZ39_p3, complete sequence	446442-446473	9	0.719
NZ_CP014597_1	1.2\|132694\|32\|NZ_CP014597\|CRT	132694-132725	32	NZ_HG938354	Neorhizobium galegae bv. orientalis str. HAMBI 540 plasmid pHAMBI540a, complete sequence	488019-488050	9	0.719
NZ_CP014597_1	1.2\|132694\|32\|NZ_CP014597\|CRT	132694-132725	32	NC_008269	Rhodococcus jostii RHA1 plasmid pRHL1, complete sequence	229175-229206	9	0.719
NZ_CP014597_1	1.2\|132694\|32\|NZ_CP014597\|CRT	132694-132725	32	NZ_CP045288	Curtobacterium flaccumfaciens pv. flaccumfaciens strain P990 plasmid pCff1, complete sequence	138638-138669	9	0.719
NZ_CP014597_1	1.2\|132694\|32\|NZ_CP014597\|CRT	132694-132725	32	NZ_CP032342	Azospirillum brasilense strain MTCC4038 plasmid p3, complete sequence	311554-311585	9	0.719
NZ_CP014597_1	1.2\|132694\|32\|NZ_CP014597\|CRT	132694-132725	32	NZ_CP033321	Azospirillum brasilense strain Cd plasmid p3, complete sequence	340311-340342	9	0.719
NZ_CP014597_1	1.2\|132694\|32\|NZ_CP014597\|CRT	132694-132725	32	NZ_CP033315	Azospirillum brasilense strain Sp 7 plasmid p3, complete sequence	386619-386650	9	0.719
NZ_CP014597_1	1.2\|132694\|32\|NZ_CP014597\|CRT	132694-132725	32	NZ_CP032349	Azospirillum brasilense strain MTCC4039 plasmid p3, complete sequence	385245-385276	9	0.719
NZ_CP014597_1	1.3\|132745\|34\|NZ_CP014597\|CRT	132745-132778	34	NZ_CP022566	Rhizobium leguminosarum bv. viciae strain BIHB 1148 plasmid pSK02, complete sequence	427633-427666	9	0.735
NZ_CP014597_1	1.2\|132694\|32\|NZ_CP014597\|CRT	132694-132725	32	NZ_CP029358	Azospirillum sp. CFH 70021 plasmid unnamed3	17921-17952	10	0.688
NZ_CP014597_1	1.3\|132745\|34\|NZ_CP014597\|CRT	132745-132778	34	NZ_CP017105	Rhizobium gallicum strain IE4872 plasmid pRgalIE4872d, complete sequence	2145518-2145551	10	0.706
NZ_CP014597_1	1.2\|132694\|32\|NZ_CP014597\|CRT	132694-132725	32	NZ_AP022334	Methylosinus sp. C49 isolate Methylosinus sp. C49 plasmid pMSC49b, complete sequence	30052-30083	11	0.656
NZ_CP014597_1	1.2\|132694\|32\|NZ_CP014597\|CRT	132694-132725	32	NC_017958	Tistrella mobilis KA081020-065 plasmid pTM3, complete sequence	944137-944168	11	0.656
NZ_CP014597_1	1.2\|132694\|32\|NZ_CP014597\|CRT	132694-132725	32	NC_016588	Azospirillum lipoferum 4B plasmid AZO_p6, complete sequence	264745-264776	11	0.656
NZ_CP014597_1	1.2\|132694\|32\|NZ_CP014597\|CRT	132694-132725	32	NC_023591	Mycobacterium phage Adler, complete genome	50653-50684	11	0.656
NZ_CP014597_1	1.2\|132694\|32\|NZ_CP014597\|CRT	132694-132725	32	KF981876	UNVERIFIED: Mycobacterium phage ADLER F1725, complete genome	50650-50681	11	0.656
NZ_CP014597_1	1.3\|132745\|34\|NZ_CP014597\|CRT	132745-132778	34	NC_015065	Granulicella tundricola MP5ACTX9 plasmid pACIX902, complete sequence	145695-145728	12	0.647

1. spacer 1.1|132646|29|NZ_CP014597|CRT matches to NZ_CP014597 (Yangia sp. CCB-MM3 plasmid unnamed1, complete sequence) position: , mismatch: 0, identity: 1.0

cccagccccgctgacgccaggctcccaac	CRISPR spacer
cccagccccgctgacgccaggctcccaac	Protospacer
*****************************

2. spacer 1.2|132694|32|NZ_CP014597|CRT matches to NZ_CP014597 (Yangia sp. CCB-MM3 plasmid unnamed1, complete sequence) position: , mismatch: 0, identity: 1.0

aaacaagcccgccccgccggccgcggctcagg	CRISPR spacer
aaacaagcccgccccgccggccgcggctcagg	Protospacer
********************************

3. spacer 1.3|132745|34|NZ_CP014597|CRT matches to NZ_CP014597 (Yangia sp. CCB-MM3 plasmid unnamed1, complete sequence) position: , mismatch: 0, identity: 1.0

tctggcccctcctccgccaaggcgcggcctccga	CRISPR spacer
tctggcccctcctccgccaaggcgcggcctccga	Protospacer
**********************************

4. spacer 1.1|132646|29|NZ_CP014597|CRT matches to NZ_CP029356 (Azospirillum sp. CFH 70021 plasmid unnamed1) position: , mismatch: 7, identity: 0.759

cccagccccgctgacgccaggctcccaac	CRISPR spacer
tcccgccccgctgacgcccggctccgccg	Protospacer
.** ************** ******

5. spacer 1.2|132694|32|NZ_CP014597|CRT matches to NZ_CP032346 (Azospirillum brasilense strain MTCC4039 plasmid p1, complete sequence) position: , mismatch: 7, identity: 0.781

aaacaagcccgccccgccggccgcggctcagg	CRISPR spacer
cagcaagcgcgccccgacggccgcggcttccg	Protospacer
 *.***** ******* ***********.  *

6. spacer 1.2|132694|32|NZ_CP014597|CRT matches to MN369761 (Mycobacterium phage Malthus, complete genome) position: , mismatch: 8, identity: 0.75

aaacaagcccgccccgccggccgcggctcagg	CRISPR spacer
cgccaagcccgccgcgccggccgcggtggaga	Protospacer
 . ********** ************.  **.

7. spacer 1.2|132694|32|NZ_CP014597|CRT matches to AP018469 (Mycobacterium phage Y10 DNA, complete genome, note: sample1) position: , mismatch: 8, identity: 0.75

aaacaagcccgccccgccggccgcggctcagg	CRISPR spacer
cgccaagcccgccgcgccggccgcggtggaga	Protospacer
 . ********** ************.  **.

8. spacer 1.2|132694|32|NZ_CP014597|CRT matches to AP018470 (Mycobacterium phage Y2 DNA, complete genome) position: , mismatch: 8, identity: 0.75

aaacaagcccgccccgccggccgcggctcagg	CRISPR spacer
cgccaagcccgccgcgccggccgcggtggaga	Protospacer
 . ********** ************.  **.

9. spacer 1.2|132694|32|NZ_CP014597|CRT matches to MH727561 (Mycobacterium phage Serendipitous, complete genome) position: , mismatch: 8, identity: 0.75

aaacaagcccgccccgccggccgcggctcagg	CRISPR spacer
gctcggtcccgccccgtcggcctcggctcagg	Protospacer
.  *.. *********.***** *********

10. spacer 1.2|132694|32|NZ_CP014597|CRT matches to MT310882 (Mycobacterium phage JF1, complete genome) position: , mismatch: 8, identity: 0.75

aaacaagcccgccccgccggccgcggctcagg	CRISPR spacer
cgccaagcccgccgcgccggccgcggtggaga	Protospacer
 . ********** ************.  **.

11. spacer 1.2|132694|32|NZ_CP014597|CRT matches to AP018471 (Mycobacterium phage Y10 DNA, complete genome, note: sample2) position: , mismatch: 8, identity: 0.75

aaacaagcccgccccgccggccgcggctcagg	CRISPR spacer
cgccaagcccgccgcgccggccgcggtggaga	Protospacer
 . ********** ************.  **.

12. spacer 1.2|132694|32|NZ_CP014597|CRT matches to MF140435 (Mycobacterium phage Wintermute, complete genome) position: , mismatch: 8, identity: 0.75

aaacaagcccgccccgccggccgcggctcagg	CRISPR spacer
cgccaagcccgccgcgccggccgcggtggaga	Protospacer
 . ********** ************.  **.

13. spacer 1.2|132694|32|NZ_CP014597|CRT matches to NC_027365 (Mycobacterium virus Fionnbarth, complete genome) position: , mismatch: 8, identity: 0.75

aaacaagcccgccccgccggccgcggctcagg	CRISPR spacer
cgccaagcccgccgcgccggccgcggtggaga	Protospacer
 . ********** ************.  **.

14. spacer 1.2|132694|32|NZ_CP014597|CRT matches to NZ_CP032322 (Azospirillum brasilense strain MTCC4035 plasmid p1, complete sequence) position: , mismatch: 8, identity: 0.75

aaacaagcccgccccgccggccgcggctcagg	CRISPR spacer
cagcaagcgcgccccgacggccgcggcctccg	Protospacer
 *.***** ******* **********..  *

15. spacer 1.2|132694|32|NZ_CP014597|CRT matches to NZ_CP007794 (Azospirillum brasilense strain Az39 plasmid AbAZ39_p1, complete sequence) position: , mismatch: 8, identity: 0.75

aaacaagcccgccccgccggccgcggctcagg	CRISPR spacer
cagcaagcgcgccccgacggccgcggccttcg	Protospacer
 *.***** ******* **********..  *

16. spacer 1.2|132694|32|NZ_CP014597|CRT matches to NZ_CP032340 (Azospirillum brasilense strain MTCC4038 plasmid p1, complete sequence) position: , mismatch: 8, identity: 0.75

aaacaagcccgccccgccggccgcggctcagg	CRISPR spacer
cagcaagcgcgccccgacggccgcggcctccg	Protospacer
 *.***** ******* **********..  *

17. spacer 1.2|132694|32|NZ_CP014597|CRT matches to NZ_CP012915 (Azospirillum brasilense strain Sp 7 plasmid ABSP7_p1, complete sequence) position: , mismatch: 8, identity: 0.75

aaacaagcccgccccgccggccgcggctcagg	CRISPR spacer
cagcaagcgcgccccgacggccgcggcctccg	Protospacer
 *.***** ******* **********..  *

18. spacer 1.2|132694|32|NZ_CP014597|CRT matches to NZ_CP029356 (Azospirillum sp. CFH 70021 plasmid unnamed1) position: , mismatch: 8, identity: 0.75

aaacaagcccgccccgccggccgcggctcagg	CRISPR spacer
gaccgcgcccgcgccgccggccgcgggtcccg	Protospacer
.* *. ****** ************* **  *

19. spacer 1.2|132694|32|NZ_CP014597|CRT matches to NZ_CP029356 (Azospirillum sp. CFH 70021 plasmid unnamed1) position: , mismatch: 8, identity: 0.75

aaacaagc--ccgccccgccggccgcggctcagg	CRISPR spacer
--gctggccgccgccgcgccggccgcggcgcagc	Protospacer
  .* .**  ***** ************* ***

20. spacer 1.2|132694|32|NZ_CP014597|CRT matches to NZ_CP012399 (Chelatococcus sp. CO-6 plasmid pCO-6, complete sequence) position: , mismatch: 8, identity: 0.75

aaacaagc---ccgccccgccggccgcggctcagg	CRISPR spacer
---cctgctcgccgccgcgccggccgcggcacaga	Protospacer
   *  **   ***** ************* ***.

21. spacer 1.2|132694|32|NZ_CP014597|CRT matches to KY555147 (Caulobacter phage Ccr34, complete genome) position: , mismatch: 8, identity: 0.75

aaacaagcccgccccgccggccgcggctcagg	CRISPR spacer
cttctatcccgacccgccggccacggctcacg	Protospacer
   * * **** **********.******* *

22. spacer 1.2|132694|32|NZ_CP014597|CRT matches to KY555145 (Caulobacter phage Ccr29, complete genome) position: , mismatch: 8, identity: 0.75

aaacaagcccgccccgccggccgcggctcagg	CRISPR spacer
cttctatcccgacccgccggccacggctcacg	Protospacer
   * * **** **********.******* *

23. spacer 1.2|132694|32|NZ_CP014597|CRT matches to KY555143 (Caulobacter phage Ccr2, complete genome) position: , mismatch: 8, identity: 0.75

aaacaagcccgccccgccggccgcggctcagg	CRISPR spacer
cttctatcccgacccgccggccacggctcacg	Protospacer
   * * **** **********.******* *

24. spacer 1.2|132694|32|NZ_CP014597|CRT matches to MH744418 (Streptomyces phage JustBecause, complete genome) position: , mismatch: 8, identity: 0.75

aaacaagcccgccccgccggccgcggctcagg	CRISPR spacer
gaccccgcccgccccgcaggccccggctcccg	Protospacer
.* *  *********** **** ******  *

25. spacer 1.2|132694|32|NZ_CP014597|CRT matches to NC_019410 (Caulobacter phage CcrKarma, complete genome) position: , mismatch: 8, identity: 0.75

aaacaagcccgccccgccggccgcggctcagg	CRISPR spacer
cttctatcccgacccgccggccacggctcacg	Protospacer
   * * **** **********.******* *

26. spacer 1.2|132694|32|NZ_CP014597|CRT matches to KY555146 (Caulobacter phage Ccr32, complete genome) position: , mismatch: 8, identity: 0.75

aaacaagcccgccccgccggccgcggctcagg	CRISPR spacer
cttctatcccgacccgccggccacggctcacg	Protospacer
   * * **** **********.******* *

27. spacer 1.2|132694|32|NZ_CP014597|CRT matches to NC_019407 (Caulobacter phage CcrMagneto, complete genome) position: , mismatch: 8, identity: 0.75

aaacaagcccgccccgccggccgcggctcagg	CRISPR spacer
cttctatcccgacccgccggccacggctcacg	Protospacer
   * * **** **********.******* *

28. spacer 1.2|132694|32|NZ_CP014597|CRT matches to KY555144 (Caulobacter phage Ccr5, complete genome) position: , mismatch: 8, identity: 0.75

aaacaagcccgccccgccggccgcggctcagg	CRISPR spacer
cttctatcccgacccgccggccacggctcacg	Protospacer
   * * **** **********.******* *

29. spacer 1.2|132694|32|NZ_CP014597|CRT matches to JX163858 (Caulobacter phage phiCbK, complete genome) position: , mismatch: 8, identity: 0.75

aaacaagcccgccccgccggccgcggctcagg	CRISPR spacer
cttctatcccgacccgccggccacggctcacg	Protospacer
   * * **** **********.******* *

30. spacer 1.2|132694|32|NZ_CP014597|CRT matches to KY555142 (Caulobacter phage Ccr10, complete genome) position: , mismatch: 8, identity: 0.75

aaacaagcccgccccgccggccgcggctcagg	CRISPR spacer
cttctatcccgacccgccggccacggctcacg	Protospacer
   * * **** **********.******* *

31. spacer 1.2|132694|32|NZ_CP014597|CRT matches to MT310898 (Streptomyces phage Kela, complete genome) position: , mismatch: 8, identity: 0.75

aaacaagcccgccccgccggccgcggctcagg	CRISPR spacer
gaccccgcccgccccgcaggccccggctcccg	Protospacer
.* *  *********** **** ******  *

32. spacer 1.2|132694|32|NZ_CP014597|CRT matches to NC_019411 (Caulobacter phage CcrSwift, complete genome) position: , mismatch: 8, identity: 0.75

aaacaagcccgccccgccggccgcggctcagg	CRISPR spacer
cttctatcccgacccgccggccacggctcacg	Protospacer
   * * **** **********.******* *

33. spacer 1.2|132694|32|NZ_CP014597|CRT matches to NZ_CP035420 (Leisingera sp. NJS204 plasmid unnamed3, complete sequence) position: , mismatch: 9, identity: 0.719

aaacaagcccgccccgccggccgcggctcagg	CRISPR spacer
agcccagctcgccccgctggccgcggctgcca	Protospacer
*. * ***.********.**********   .

34. spacer 1.2|132694|32|NZ_CP014597|CRT matches to NZ_CP028969 (Aminobacter sp. MSH1 plasmid pUSP1, complete sequence) position: , mismatch: 9, identity: 0.719

aaacaagcccgccccgccggccgcggctcagg	CRISPR spacer
gccgaagcccgccccgagggccgcggcgatgg	Protospacer
.   ************  *********   **

35. spacer 1.2|132694|32|NZ_CP014597|CRT matches to NZ_CP032325 (Azospirillum brasilense strain MTCC4035 plasmid p4, complete sequence) position: , mismatch: 9, identity: 0.719

aaacaagcccgccccgccggccgcggctcagg	CRISPR spacer
gtccctgtacgccctgccggccgcggcccagg	Protospacer
.  *  *. *****.************.****

36. spacer 1.2|132694|32|NZ_CP014597|CRT matches to NZ_CP026266 (Aminobacter sp. MSH1 plasmid pAM01, complete sequence) position: , mismatch: 9, identity: 0.719

aaacaagcccgccccgccggccgcggctcagg	CRISPR spacer
gccgaagcccgccccgagggccgcggcgatgg	Protospacer
.   ************  *********   **

37. spacer 1.2|132694|32|NZ_CP014597|CRT matches to NZ_CP022369 (Azospirillum sp. TSH58 plasmid TSH58_p05, complete sequence) position: , mismatch: 9, identity: 0.719

aaacaagcccgccccgccggccgcggctcagg	CRISPR spacer
ttccctgtacgccctgccggccgcggcccagg	Protospacer
   *  *. *****.************.****

38. spacer 1.2|132694|32|NZ_CP014597|CRT matches to NZ_CP007796 (Azospirillum brasilense strain Az39 plasmid AbAZ39_p3, complete sequence) position: , mismatch: 9, identity: 0.719

aaacaagcccgccccgccggccgcggctcagg	CRISPR spacer
gtccctgtacgccctgccggccgcggcccagg	Protospacer
.  *  *. *****.************.****

39. spacer 1.2|132694|32|NZ_CP014597|CRT matches to NZ_HG938354 (Neorhizobium galegae bv. orientalis str. HAMBI 540 plasmid pHAMBI540a, complete sequence) position: , mismatch: 9, identity: 0.719

aaacaagcccgccccgccggccgcggctcagg	CRISPR spacer
tctcgcactcgcctcgccggccgcggcgcagg	Protospacer
   *. .*.****.************* ****

40. spacer 1.2|132694|32|NZ_CP014597|CRT matches to NC_008269 (Rhodococcus jostii RHA1 plasmid pRHL1, complete sequence) position: , mismatch: 9, identity: 0.719

aaacaagcccgccccgccggccgcggctcagg	CRISPR spacer
gaagaagaccgccccgccggccgctccggtga	Protospacer
.** *** ****************  *   *.

41. spacer 1.2|132694|32|NZ_CP014597|CRT matches to NZ_CP045288 (Curtobacterium flaccumfaciens pv. flaccumfaciens strain P990 plasmid pCff1, complete sequence) position: , mismatch: 9, identity: 0.719

aaacaagcccgccccgccggccgcggctcagg	CRISPR spacer
ggccgcgcccgccgcgccggcggcggctcgcg	Protospacer
.. *. ******* ******* *******. *

42. spacer 1.2|132694|32|NZ_CP014597|CRT matches to NZ_CP032342 (Azospirillum brasilense strain MTCC4038 plasmid p3, complete sequence) position: , mismatch: 9, identity: 0.719

aaacaagcccgccccgccggccgcggctcagg	CRISPR spacer
ctccctgtacgccctgccggccgcggcccagg	Protospacer
   *  *. *****.************.****

43. spacer 1.2|132694|32|NZ_CP014597|CRT matches to NZ_CP033321 (Azospirillum brasilense strain Cd plasmid p3, complete sequence) position: , mismatch: 9, identity: 0.719

aaacaagcccgccccgccggccgcggctcagg	CRISPR spacer
ctccctgtacgccctgccggccgcggcccagg	Protospacer
   *  *. *****.************.****

44. spacer 1.2|132694|32|NZ_CP014597|CRT matches to NZ_CP033315 (Azospirillum brasilense strain Sp 7 plasmid p3, complete sequence) position: , mismatch: 9, identity: 0.719

aaacaagcccgccccgccggccgcggctcagg	CRISPR spacer
ctccctgtacgccctgccggccgcggcccagg	Protospacer
   *  *. *****.************.****

45. spacer 1.2|132694|32|NZ_CP014597|CRT matches to NZ_CP032349 (Azospirillum brasilense strain MTCC4039 plasmid p3, complete sequence) position: , mismatch: 9, identity: 0.719

aaacaagcccgccccgccggccgcggctcagg	CRISPR spacer
ctccctgtacgccctgccggccgcggcccagg	Protospacer
   *  *. *****.************.****

46. spacer 1.3|132745|34|NZ_CP014597|CRT matches to NZ_CP022566 (Rhizobium leguminosarum bv. viciae strain BIHB 1148 plasmid pSK02, complete sequence) position: , mismatch: 9, identity: 0.735

tctggcccctcctccgccaaggcgcggcctccga	CRISPR spacer
gcgcgcccctcctccgtcaaggcgaggccgcgac	Protospacer
 *  ************.******* **** * .

47. spacer 1.2|132694|32|NZ_CP014597|CRT matches to NZ_CP029358 (Azospirillum sp. CFH 70021 plasmid unnamed3) position: , mismatch: 10, identity: 0.688

aaacaagcccgccccgccggccgcggctcagg	CRISPR spacer
ttttaagcccggcccgcccgccgcggcggccg	Protospacer
   .******* ****** ********    *

48. spacer 1.3|132745|34|NZ_CP014597|CRT matches to NZ_CP017105 (Rhizobium gallicum strain IE4872 plasmid pRgalIE4872d, complete sequence) position: , mismatch: 10, identity: 0.706

tctggcccctcctccgccaaggcgcggcctccga	CRISPR spacer
gcgcccccctcctccgtcaaggcgaggccgcgac	Protospacer
 *   ***********.******* **** * .

49. spacer 1.2|132694|32|NZ_CP014597|CRT matches to NZ_AP022334 (Methylosinus sp. C49 isolate Methylosinus sp. C49 plasmid pMSC49b, complete sequence) position: , mismatch: 11, identity: 0.656

aaacaagcccgccccgccggccgcggctcagg	CRISPR spacer
cgctcggcccgcctcgccggccacggctccca	Protospacer
 . . .*******.********.******  .

50. spacer 1.2|132694|32|NZ_CP014597|CRT matches to NC_017958 (Tistrella mobilis KA081020-065 plasmid pTM3, complete sequence) position: , mismatch: 11, identity: 0.656

aaacaagcccgccccgccggccgcggctcagg	CRISPR spacer
cggcaagcccgcccagccggtcgcgggcggcc	Protospacer
 ..*********** *****.***** . .

51. spacer 1.2|132694|32|NZ_CP014597|CRT matches to NC_016588 (Azospirillum lipoferum 4B plasmid AZO_p6, complete sequence) position: , mismatch: 11, identity: 0.656

aaacaagcccgccccgccggccgcggctcagg	CRISPR spacer
gccgctgcccgcaccgccggccgcgcctcgtc	Protospacer
.     ****** ************ ***.

52. spacer 1.2|132694|32|NZ_CP014597|CRT matches to NC_023591 (Mycobacterium phage Adler, complete genome) position: , mismatch: 11, identity: 0.656

aaacaagcccgccccgccggccgcggctcagg	CRISPR spacer
cgacaagcccgccccgctgcccgcgttctgca	Protospacer
 .***************.* ***** .... .

53. spacer 1.2|132694|32|NZ_CP014597|CRT matches to KF981876 (UNVERIFIED: Mycobacterium phage ADLER F1725, complete genome) position: , mismatch: 11, identity: 0.656

aaacaagcccgccccgccggccgcggctcagg	CRISPR spacer
cgacaagcccgccccgctgcccgcgttctgca	Protospacer
 .***************.* ***** .... .

54. spacer 1.3|132745|34|NZ_CP014597|CRT matches to NC_015065 (Granulicella tundricola MP5ACTX9 plasmid pACIX902, complete sequence) position: , mismatch: 12, identity: 0.647

tctggcccctcctccgccaaggcgcggcctccga	CRISPR spacer
gtaacaacctcctccggcaaggcgctgcctcgac	Protospacer
 . .   ********* ******** ***** .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

8995 : 17053

Mycobacterium_phage(33.33%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_066110512.1\|8995_9487_+	type II toxin-antitoxin system death-on-curing family toxin	A0A222YZ88	Escherichia_phage	6.7e-08	32.1
WP_066110514.1\|9907_10267_-	hypothetical protein	NA	NA	NA	NA
WP_066110515.1\|11570_11792_+	glutaredoxin-like protein NrdH	V5UN81	Mycobacterium_phage	1.6e-14	54.3
WP_066110517.1\|11800_12199_+	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	A0A2H4J6X7	uncultured_Caudovirales_phage	4.3e-13	38.5
WP_083191413.1\|12195_14337_+	class 1b ribonucleoside-diphosphate reductase subunit alpha	V9VI16	Lactococcus_phage	5.3e-198	49.5
WP_066110519.1\|14446_15409_+	class 1b ribonucleoside-diphosphate reductase subunit beta	R4TBI6	Mycobacterium_phage	2.8e-135	74.1
WP_066111019.1\|15553_17053_-	PLP-dependent aminotransferase family protein	A0A1X9I5H2	Streptococcus_phage	1.0e-14	27.5

DBSCAN-SWA_2

80034 : 165747

Thermus_phage(12.5%)

transposase,integrase

attL 126408:126424|attR 167158:167174

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_066110594.1\|80034_80994_+\|transposase	IS110 family transposase	A0A1S7J231	Thermus_phage	7.7e-16	32.1
WP_066110596.1\|81016_81637_-	hypothetical protein	NA	NA	NA	NA
WP_066110598.1\|81816_82488_-	hypothetical protein	NA	NA	NA	NA
WP_066110600.1\|82538_82859_+\|transposase	transposase	NA	NA	NA	NA
WP_066110601.1\|84233_84623_-	hypothetical protein	NA	NA	NA	NA
WP_066110605.1\|85202_86261_+	hypothetical protein	NA	NA	NA	NA
WP_083191420.1\|86359_86953_-	L,D-transpeptidase	NA	NA	NA	NA
WP_157374325.1\|87221_87857_-	hypothetical protein	NA	NA	NA	NA
WP_066110609.1\|88018_88567_-	hypothetical protein	NA	NA	NA	NA
WP_066110611.1\|89360_92783_-	hypothetical protein	NA	NA	NA	NA
WP_066110613.1\|92784_93429_-	DUF4194 domain-containing protein	NA	NA	NA	NA
WP_066110615.1\|93428_94820_-	hypothetical protein	NA	NA	NA	NA
WP_066110617.1\|94938_95208_+	hypothetical protein	NA	NA	NA	NA
WP_157374326.1\|95215_95551_-	hypothetical protein	NA	NA	NA	NA
WP_066110620.1\|95949_96255_-	hypothetical protein	A0A0F6WCV7	Sinorhizobium_phage	1.9e-08	42.9
WP_157374327.1\|96420_97177_+\|transposase	IS5 family transposase	A0A0N9SJT9	Paenibacillus_phage	7.2e-09	35.5
WP_066110594.1\|98837_99797_+\|transposase	IS110 family transposase	A0A1S7J231	Thermus_phage	7.7e-16	32.1
WP_066110624.1\|99937_100336_+	response regulator	NA	NA	NA	NA
WP_066110626.1\|100332_100866_-	hypothetical protein	NA	NA	NA	NA
WP_083191422.1\|101764_102484_-	LuxR family transcriptional regulator	NA	NA	NA	NA
WP_066110630.1\|102951_104082_+\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_083191423.1\|104848_105097_-\|transposase	transposase	NA	NA	NA	NA
WP_157374189.1\|105289_106419_-\|transposase	IS3 family transposase	S5WIU1	Leptospira_phage	9.3e-37	35.9
WP_066110632.1\|106479_107022_-\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_066110633.1\|107291_107939_-	hypothetical protein	NA	NA	NA	NA
WP_066110635.1\|108213_108420_-	cold-shock protein	A0A1W6JNX5	Morganella_phage	8.7e-10	50.0
WP_066110637.1\|108688_110449_+	ATP-dependent helicase	A7KV33	Bacillus_phage	1.7e-16	26.1
WP_157374328.1\|110595_110739_-	hypothetical protein	NA	NA	NA	NA
WP_157374329.1\|111325_111550_-	hypothetical protein	NA	NA	NA	NA
WP_157374330.1\|111916_112588_-	hypothetical protein	NA	NA	NA	NA
WP_066110645.1\|112807_113002_+	hypothetical protein	NA	NA	NA	NA
WP_066110647.1\|113101_113374_-	hypothetical protein	NA	NA	NA	NA
WP_066110649.1\|113499_113679_-	hypothetical protein	NA	NA	NA	NA
WP_157374331.1\|113932_114571_-	hypothetical protein	NA	NA	NA	NA
WP_157374332.1\|114915_116267_-\|transposase	IS3 family transposase	Q8W6R2	Burkholderia_virus	4.7e-11	29.5
WP_066110655.1\|116441_117413_-	DUF559 domain-containing protein	NA	NA	NA	NA
WP_066110657.1\|117485_118295_+	streptomycin kinase	NA	NA	NA	NA
WP_157374255.1\|118701_119828_-\|transposase	IS3 family transposase	S5WIU1	Leptospira_phage	1.3e-30	32.4
WP_157374333.1\|119888_120008_-	hypothetical protein	NA	NA	NA	NA
WP_066110660.1\|120053_120731_-	HDIG domain-containing protein	NA	NA	NA	NA
WP_066110662.1\|121057_121417_+	hypothetical protein	NA	NA	NA	NA
WP_157374334.1\|121422_121770_+	hypothetical protein	NA	NA	NA	NA
WP_066110668.1\|121791_124617_-	hypothetical protein	NA	NA	NA	NA
WP_066110670.1\|124682_125432_-	hypothetical protein	NA	NA	NA	NA
WP_066110673.1\|126078_126993_+	porin	NA	NA	NA	NA
126408:126424	attL	NA	NA	NA	NA
WP_066110675.1\|127571_128969_+	PAS domain-containing protein	NA	NA	NA	NA
WP_066111034.1\|129048_129705_+	hypothetical protein	NA	NA	NA	NA
WP_157374335.1\|129743_130211_-	hypothetical protein	NA	NA	NA	NA
WP_083191425.1\|130339_131299_-	Fic family protein	NA	NA	NA	NA
WP_157374336.1\|132947_134099_+	hypothetical protein	NA	NA	NA	NA
WP_066110685.1\|134283_135213_+	hypothetical protein	NA	NA	NA	NA
WP_066110688.1\|136076_136736_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_083191427.1\|137123_138260_-	hypothetical protein	NA	NA	NA	NA
WP_066110690.1\|138256_139267_-	SpoIIE family protein phosphatase	NA	NA	NA	NA
WP_083191428.1\|139263_139581_-	hypothetical protein	NA	NA	NA	NA
WP_066110692.1\|139675_140029_-	STAS domain-containing protein	NA	NA	NA	NA
WP_066110694.1\|140030_140906_-	STAS domain-containing protein	NA	NA	NA	NA
WP_066110696.1\|141426_141795_-	response regulator	NA	NA	NA	NA
WP_066110698.1\|142356_142923_-	hypothetical protein	NA	NA	NA	NA
WP_066110700.1\|143058_144639_-	sodium/solute symporter	A0A219Y9P9	Aeromonas_phage	1.6e-42	29.3
WP_066110703.1\|145510_146839_-	type VI secretion protein ImpB	NA	NA	NA	NA
WP_066110705.1\|147655_148456_-	hypothetical protein	NA	NA	NA	NA
WP_157374337.1\|148520_149871_+\|transposase	IS3 family transposase	Q8W6R2	Burkholderia_virus	2.5e-12	30.1
WP_083191429.1\|150398_151613_+	MFS transporter	NA	NA	NA	NA
WP_066110709.1\|151647_152544_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_066110713.1\|152650_153610_+	thioredoxin-disulfide reductase	A0A2I2L5E1	Orpheovirus	3.9e-68	46.3
WP_066110715.1\|153649_153973_+	thioredoxin fold domain-containing protein	A0A0A7CHH9	Dinoroseobacter_phage	1.8e-09	34.8
WP_066110717.1\|153987_154419_+	hypothetical protein	NA	NA	NA	NA
WP_066110718.1\|154518_154776_+	glutaredoxin 3	V9QKN6	Rhizobium_phage	4.4e-11	39.5
WP_066110720.1\|154914_155400_+	DUF2938 family protein	NA	NA	NA	NA
WP_066110721.1\|155604_156237_-\|integrase	tyrosine-type recombinase/integrase	A0A2H4J6I5	uncultured_Caudovirales_phage	1.4e-10	30.8
WP_066110722.1\|156759_157767_+	succinylglutamate desuccinylase	NA	NA	NA	NA
WP_066110723.1\|157763_158744_+	threonine/serine dehydratase	NA	NA	NA	NA
WP_066110725.1\|158736_159942_+	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA
WP_066110727.1\|160330_162034_-	alkaline phosphatase family protein	NA	NA	NA	NA
WP_066110729.1\|162807_164349_+	arylsulfatase	A0A2P0VMN7	Tetraselmis_virus	1.3e-150	53.3
WP_066107743.1\|164727_165747_-\|transposase	IS110 family transposase	NA	NA	NA	NA
167158:167174	attR	NA	NA	NA	NA

DBSCAN-SWA_3

208307 : 249950

Leptospira_phage(42.86%)

transposase,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_157374189.1\|208307_209436_+\|transposase	IS3 family transposase	S5WIU1	Leptospira_phage	9.3e-37	35.9
WP_066110807.1\|209482_209740_+	hypothetical protein	NA	NA	NA	NA
WP_083191438.1\|209870_211172_+	pyridoxal phosphate-dependent aminotransferase family protein	NA	NA	NA	NA
WP_066110812.1\|211178_211946_-	hypothetical protein	NA	NA	NA	NA
WP_066110814.1\|212313_212901_+	HAD family hydrolase	NA	NA	NA	NA
WP_066110816.1\|213046_214420_+	hypothetical protein	NA	NA	NA	NA
WP_066110818.1\|214507_215425_-	type I-C CRISPR-associated protein Cas7/Csd2	NA	NA	NA	NA
WP_066110820.1\|215424_217254_-	type I-C CRISPR-associated protein Cas8c/Csd1	NA	NA	NA	NA
WP_066110822.1\|217250_217595_-	hypothetical protein	NA	NA	NA	NA
WP_157374205.1\|217727_219079_-\|transposase	IS3 family transposase	Q8W6R2	Burkholderia_virus	2.5e-12	30.1
WP_157374346.1\|219132_219879_-	hypothetical protein	NA	NA	NA	NA
WP_066110826.1\|220349_221228_+	hypothetical protein	NA	NA	NA	NA
WP_157374347.1\|221230_222472_+	DUF560 domain-containing protein	NA	NA	NA	NA
WP_157374348.1\|222703_223834_+	hypothetical protein	NA	NA	NA	NA
WP_066110831.1\|223906_225199_+	pyridoxal phosphate-dependent aminotransferase family protein	D2TEZ5	Emiliania_huxleyi_virus	1.9e-25	28.5
WP_157374349.1\|225321_225498_+	hypothetical protein	NA	NA	NA	NA
WP_083191440.1\|225825_226404_-	hypothetical protein	NA	NA	NA	NA
WP_066110834.1\|226778_227948_+	trypsin-like peptidase domain-containing protein	NA	NA	NA	NA
WP_083191459.1\|228202_228337_+	DUF2256 domain-containing protein	NA	NA	NA	NA
WP_066110837.1\|228565_228856_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_083191441.1\|228852_229419_+	hypothetical protein	NA	NA	NA	NA
WP_157374350.1\|229402_230528_+\|transposase	IS3 family transposase	S5WIU1	Leptospira_phage	2.0e-31	33.2
WP_066110844.1\|231028_231376_+	hypothetical protein	K4JQI5	Caulobacter_virus	2.9e-05	36.3
WP_066110846.1\|231439_231835_+	hypothetical protein	NA	NA	NA	NA
WP_083191442.1\|231925_232348_+	META domain-containing protein	NA	NA	NA	NA
WP_066110850.1\|232391_232658_-	hypothetical protein	NA	NA	NA	NA
WP_157374351.1\|233004_233310_+	hypothetical protein	NA	NA	NA	NA
WP_157374352.1\|233335_233734_+	hypothetical protein	NA	NA	NA	NA
WP_083191443.1\|233807_234956_-	PAS and helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_066110854.1\|235306_235780_-	hypothetical protein	NA	NA	NA	NA
WP_066110856.1\|235932_236655_-	hypothetical protein	NA	NA	NA	NA
WP_066110857.1\|236850_237834_+	hypothetical protein	NA	NA	NA	NA
WP_066110859.1\|237850_238309_-	hypothetical protein	NA	NA	NA	NA
WP_066110860.1\|238448_239270_+	hypothetical protein	NA	NA	NA	NA
WP_157374189.1\|240518_241647_+\|transposase	IS3 family transposase	S5WIU1	Leptospira_phage	9.3e-37	35.9
WP_066110862.1\|241674_242190_-	transglutaminase domain-containing protein	NA	NA	NA	NA
WP_066110863.1\|242551_243055_+	hypothetical protein	NA	NA	NA	NA
WP_066110865.1\|243057_243927_+\|protease	M48 family metalloprotease	NA	NA	NA	NA
WP_066110867.1\|244167_244869_+	hypothetical protein	NA	NA	NA	NA
WP_066110869.1\|245000_245675_-	hypothetical protein	NA	NA	NA	NA
WP_157374353.1\|245819_246098_-	hypothetical protein	NA	NA	NA	NA
WP_066110871.1\|246191_246842_+	hypothetical protein	NA	NA	NA	NA
WP_083191444.1\|247783_248557_-	response regulator transcription factor	NA	NA	NA	NA
WP_157374354.1\|248710_248896_+	hypothetical protein	NA	NA	NA	NA
WP_083191461.1\|249161_249560_+	MucR family transcriptional regulator	A0A1P8VVG0	Erythrobacter_phage	8.4e-09	35.6
WP_083191445.1\|249803_249950_-\|transposase	transposase	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP014595

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP014595_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP014595_2

1711969-1712062

Orphan

Consensus_repeat	Method
GGGCAAGGTCACCTATCCCGACGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP014595_2

>merge|NZ_CP014595|2|1711969-1712062|CRISPRCasFinder
GGGCAAGGTCACCTATCCCGACGGTTCGATCTACGAGGGCGCCTTCCTCGGCGATCTCGCCAATGGCCGGGGCAAGATCACCTATCCCGACGGC

>NZ_CP014595|2|2|1711969-1712062|CRISPRCasFinder
GGGCAAGGTCACCTATCCCGACGG	TTCGATCTACGAGGGCGCCTTCCTCGGCGATCTCGCCAATGGCCG
GGGCAAGATCACCTATCCCGACGGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP014595.1\|WP_066103643.1\|1713049_1714579_-\|deoxyribodipyrimidine-photolyase	unknown	unknown	gnl\|CDD\|225588
NZ_CP014595.1\|WP_066103646.1\|1717091_1718075_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|226361
NZ_CP014595.1\|WP_066103628.1\|1701800_1703030_+\|DUF2254-domain-containing-protein	unknown	unknown	gnl\|CDD\|378351
NZ_CP014595.1\|WP_066106888.1\|1715290_1716115_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|380091
NZ_CP014595.1\|WP_066103632.1\|1704706_1705654_+\|1-phosphofructokinase-family-hexose-kinase	unknown	unknown	gnl\|CDD\|238570
NZ_CP014595.1\|WP_066103638.1\|1709281_1710940_-\|NAD+-synthase	unknown	unknown	gnl\|CDD\|237577
NZ_CP014595.1\|WP_066106880.1\|1706739_1706949_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP014595.1\|WP_066106883.1\|1708850_1709252_+\|metallopeptidase-family-protein	unknown	unknown	gnl\|CDD\|240572
NZ_CP014595.1\|WP_066103650.1\|1719523_1720387_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224097
NZ_CP014595.1\|WP_066103652.1\|1720390_1721230_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224098
NZ_CP014595.1\|WP_066103654.1\|1721229_1721868_+\|HyuE-hydantoin-racemase	unknown	unknown	gnl\|CDD\|226611
NZ_CP014595.1\|WP_066103648.1\|1718141_1719407_+\|extracellular-solute-binding-protein	unknown	unknown	gnl\|CDD\|223759
NZ_CP014595.1\|WP_157374024.1\|1707130_1708075_+\|MBL-fold-metallo-hydrolase	unknown	unknown	gnl\|CDD\|293806
NZ_CP014595.1\|WP_066103645.1\|1714572_1715250_-\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|181609
NZ_CP014595.1\|WP_066103641.1\|1712718_1712934_+\|DUF2945-domain-containing-protein	unknown	unknown	gnl\|CDD\|378576
NZ_CP014595.1\|WP_066103626.1\|1701237_1701804_+\|gamma-glutamylcyclotransferase	unknown	unknown	gnl\|CDD\|119400
NZ_CP014595.1\|WP_083191191.1\|1716114_1716828_-\|GntR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224715
NZ_CP014595.1\|WP_066103630.1\|1703271_1704606_-\|glutamate--tRNA-ligase	unknown	unknown	gnl\|CDD\|183594
NZ_CP014595.1\|WP_066103637.1\|1708102_1708654_-\|2OG-Fe(II)-oxygenase	unknown	unknown	gnl\|CDD\|379309
NZ_CP014595.1\|WP_066103633.1\|1705732_1706728_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP014595.1\|WP_066103646.1\|1717091_1718075_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|226361	COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism].	1.56355e-135
NZ_CP014595.1\|WP_066103641.1\|1712718_1712934_+\|DUF2945-domain-containing-protein	gnl\|CDD\|378576	pfam11160, DUF2945, Protein of unknown function (DUF2945). This family of proteins has no known function.	3.64783e-16
NZ_CP014595.1\|WP_066106888.1\|1715290_1716115_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|380091	pfam18014, Acetyltransf_18, Acetyltransferase (GNAT) domain. This entry represents a likely acetyltransferase enzyme that is related to pfam06852.	5.78878e-23
NZ_CP014595.1\|WP_066103632.1\|1704706_1705654_+\|1-phosphofructokinase-family-hexose-kinase	gnl\|CDD\|238570	cd01164, FruK_PfkB_like, 1-phosphofructokinase (FruK), minor 6-phosphofructokinase (pfkB) and related sugar kinases. FruK plays an important role in the predominant pathway for fructose utilisation.This group also contains tagatose-6-phophate kinase, an enzyme of the tagatose 6-phosphate pathway, which responsible for breakdown of the galactose moiety during lactose metabolism by bacteria such as L. lactis.	1.15896e-85
NZ_CP014595.1\|WP_066103638.1\|1709281_1710940_-\|NAD+-synthase	gnl\|CDD\|237577	PRK13981, PRK13981, NAD synthetase; Provisional.	0
NZ_CP014595.1\|WP_066103654.1\|1721229_1721868_+\|HyuE-hydantoin-racemase	gnl\|CDD\|226611	COG4126, COG4126, Hydantoin racemase [Amino acid transport and metabolism].	1.56415e-54
NZ_CP014595.1\|WP_066106883.1\|1708850_1709252_+\|metallopeptidase-family-protein	gnl\|CDD\|240572	cd12952, MMP_ACEL2062, Minimal MMP-like domain found in Acidothermus cellulolyticus hypothetical protein ACEL2062 and similar protein. The subfamily includes an uncharacterized protein from Acidothermus cellulolyticus (ACEL2062) and its homologs from bacteria. Although its biological role remains unclear, ACEL2062 contains a minimal metalloprotease (MMP)-like domain consisting of 3-stranded mixed 2-beta sheets and a HExxHxxGxxD/S (x could be any amino acid) motif. It may belong to a superfamily of bacterial zinc metallo-peptidases, which is characterized by a conserved HExxHxxGxxD motif.	2.22912e-49
NZ_CP014595.1\|WP_066103650.1\|1719523_1720387_+\|ABC-transporter-permease	gnl\|CDD\|224097	COG1176, PotB, ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport and metabolism].	2.80025e-71
NZ_CP014595.1\|WP_066103652.1\|1720390_1721230_+\|ABC-transporter-permease	gnl\|CDD\|224098	COG1177, PotC, ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism].	3.06452e-55
NZ_CP014595.1\|WP_066103648.1\|1718141_1719407_+\|extracellular-solute-binding-protein	gnl\|CDD\|223759	COG0687, PotD, Spermidine/putrescine-binding periplasmic protein [Amino acid transport and metabolism].	4.81006e-23
NZ_CP014595.1\|WP_066103637.1\|1708102_1708654_-\|2OG-Fe(II)-oxygenase	gnl\|CDD\|379309	pfam13640, 2OG-FeII_Oxy_3, 2OG-Fe(II) oxygenase superfamily. This family contains members of the 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily.	2.79691e-20
NZ_CP014595.1\|WP_157374024.1\|1707130_1708075_+\|MBL-fold-metallo-hydrolase	gnl\|CDD\|293806	cd07720, OPHC2-like_MBL-fold, Pseudomonas pseudoalcaligenes organophosphorus hydrolase C2, and related proteins; MBL-fold metallo hydrolase domain. Pseudomonas pseudoalcaligenes OPHC2 is a thermostable organophosphorus hydrolase which a broad substrate activity spectrum: it hydrolyzes various phosphotriesters, esters, and a lactone. This subgroup also includes Pseudomonas oleovorans PoOPH which exhibits high lactonase and esterase activities, and latent PTE activity. However, double mutations His250Ile/Ile263Trp switch PoOPH into an efficient and thermostable PTE. Members of this subgroup belong to the MBL-fold metallo-hydrolase superfamily which is comprised mainly of hydrolytic enzymes which carry out a variety of biological functions.	1.47914e-85
NZ_CP014595.1\|WP_066103645.1\|1714572_1715250_-\|SDR-family-oxidoreductase	gnl\|CDD\|181609	PRK09009, PRK09009, SDR family oxidoreductase.	1.17359e-59
NZ_CP014595.1\|WP_066103643.1\|1713049_1714579_-\|deoxyribodipyrimidine-photolyase	gnl\|CDD\|225588	COG3046, COG3046, Uncharacterized protein related to deoxyribodipyrimidine photolyase [General function prediction only].	0
NZ_CP014595.1\|WP_066103626.1\|1701237_1701804_+\|gamma-glutamylcyclotransferase	gnl\|CDD\|119400	cd06661, GGCT_like, GGCT-like domains, also called AIG2-like family. Gamma-glutamyl cyclotransferase (GGCT) catalyzes the formation of pyroglutamic acid (5-oxoproline) from dipeptides containing gamma-glutamyl, and is a dimeric protein. In Homo sapiens, the protein is encoded by the gene C7orf24, and the enzyme participates in the gamma-glutamyl cycle. Hereditary defects in the gamma-glutamyl cycle have been described for some of the genes involved, but not for C7orf24. The synthesis and metabolism of glutathione (L-gamma-glutamyl-L-cysteinylglycine) ties the gamma-glutamyl cycle to numerous cellular processes; glutathione acts as a ubiquitous reducing agent in reductive mechanisms involved in protein and DNA synthesis, transport processes, enzyme activity, and metabolism. AIG2 (avrRpt2-induced gene) is an Arabidopsis protein that exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae pv maculicola strain ES4326 carrying avrRpt2. avrRpt2 is an avirulence gene that can convert virulent strains of P. syringae to avirulence on Arabidopsis thaliana, soybean, and bean. The family also includes bacterial tellurite-resistance proteins (trgB); tellurium (Te) compounds are used in industrial processes and had been used as antimicrobial agents in the past. Some members have been described proteins involved in cation transport (chaC).	2.15743e-06
NZ_CP014595.1\|WP_083191191.1\|1716114_1716828_-\|GntR-family-transcriptional-regulator	gnl\|CDD\|224715	COG1802, GntR, Transcriptional regulators [Transcription].	5.68239e-43
NZ_CP014595.1\|WP_066103630.1\|1703271_1704606_-\|glutamate--tRNA-ligase	gnl\|CDD\|183594	PRK12558, PRK12558, glutamyl-tRNA synthetase; Provisional.	0
NZ_CP014595.1\|WP_066103628.1\|1701800_1703030_+\|DUF2254-domain-containing-protein	gnl\|CDD\|378351	pfam10011, DUF2254, Predicted membrane protein (DUF2254). Members of this family of bacterial proteins comprises various hypothetical and putative membrane proteins. Their exact function, has not, as yet, been defined.	2.64168e-95

>NZ_CP014595.1|WP_066103638.1|1709281_1710940_-|NAD+-synthase
MADRFRLTIAQLNPTVGDLAGNAAKAKDAWKKGRDAGAQLVALPEMFIAGYNAQDLPKKHAFTLDCMEVAQKLAEDCADGPALAIGCPWIEGTELYNAYLICRGGRIVTHVFKHHLPNYGVFDEVRVFDSGAIGGPYAVGNVRIGSPICEDAWYEDVAETHAETGAEFLLVPNGSPYRRNKHETRLNKMVARVVETGLPLIYLNMVGGQDDQIFDGGSFVLNPGGQAALQLPVFEEEIAHVDLVRTPEGWRAEDGRFVQHPDDMEQDYHAMVLSLRDYCRKTGFGKVLLGMSGGIDSALVATIATDALGAENVRCVMLPSEYTSEHSLEDAKACATNLGCHYDFVPIAEGRDAITKTLAPLFAGRDADLTEENIQSRLRGLLLMALSNKFGEMLLTTGNKSEVAVGYATIYGDMAGGYNPIKDLYKTRVFAICRWRNENQRPWMNGPDGEVIPERIITKPPSAELREDQKDSDSLPDYPVLDGILEILVDRDGSIADCVAAGYDRADAKKVEHLLYISEYKRFQAAPGARLSQKAFWLDRRYPIANRWRDNG
>NZ_CP014595.1|WP_066106883.1|1708850_1709252_+|metallopeptidase-family-protein
MTTPDTAPDLAAFETMARAAVNALPEPFRAAAAEVVLQVEDWPPEDILQEMQIDDRLDLTGLYEGVPMTEKSSSWPSPYPDTVWLFREPILQEWRDRGDVELDALIAHVTMHEFAHHFGWSDDDIASIDRWWE
>NZ_CP014595.1|WP_066103637.1|1708102_1708654_-|2OG-Fe(II)-oxygenase
MITVHSIPQAFSEVDCSRLIEISRNAEASDARLVGQQRAHNMRRADLVWLDDVEDTGWVMDRIIELVRDANRSAYDFALDAFDESAQVARYGAEREGHFDWHSDIGEGRLAARRKLTMVVQLSDEGAYEGGALELMPSNHVVAAKKERGTATLFPSYMLHRVTPVTGGERHSLTIWAHGPAFR
>NZ_CP014595.1|WP_157374024.1|1707130_1708075_+|MBL-fold-metallo-hydrolase
MTNMEKNKMTRRSALTAAAALPLAAGLTGAGARPAAAQSAQGPQVPRTYRVPLGDFEVTAMMAGTRTVPEPKGTFGLNASDEEFAEVSKAAHIPTDKAQFFFTPTLVNTGSAVILFDTGLDPAGITAAVEAAGYAPEDVTHVVITHMHGDHIGGLSDGGTPTFGNAALLTGQEEWNHWTEAANDTFESKVRPLEDQFSFLGNGEEVAPGITSVLAPGHTPGHMCFMLESGGQKLMLTADLANHYVWSVGKPDWEVRFDMDKELAASSRRKIFGTLAEDKTPFIGYHMPFPAVGYVEAEGDGFRYVPHSYQLLMT
>NZ_CP014595.1|WP_066106880.1|1706739_1706949_-|hypothetical-protein
MIPDASNPCWRRVLSSEAELSGAVLATKILVTRLRREVKASPAQMSGKIAELRGYFEKNAFATKDIALF
>NZ_CP014595.1|WP_066103633.1|1705732_1706728_-|hypothetical-protein
MKNQMMTPEQAAARIDAGATLVIAGDEEVLTKLPRGRWIGGTTVYFMTETGGHVDRENVFVTELEAAEDARAVLYEGEDLPSLTMGRFDNGLSVILIPAFSKAHEAYAIHGAEYPGLFDQPVMGWITGVHLDELASATPKVIDGTTGRVHQEGALVLHVKLSASRSANVEILNLFTQDDNGPEITFPATGFAAETARINGAEVDFAKWVEAQGIDTRLPLVANYAGALVNVSFQSVGPEGVAFYAPVIEGVSYRLAASPGDYTTVFARQAQGDGAQELSCNCILNFLFGELQDKRTGSFTGPVTFGEIAYILLNQTMVRLQLHGQDQAAVA
>NZ_CP014595.1|WP_066103632.1|1704706_1705654_+|1-phosphofructokinase-family-hexose-kinase
MRDILTVTLNPALDLSTTADRVEAGPKLRCDAPAIDPGGGGINVARLAAELGGPARAFVALSGPTGMRLEAALAELGLPMVRMKAPGETRESFAVHDRQTGAQYRFVMPGPVWSAGDVMDALDAISSTVPQGGIVVLSGSQPPGVPDDFPTELCRALKGRGAYVIVDTSGPVLEALARGTDPAPAVLRMDSLEAEELAGRPLMTRADSAGFAAELVARGAAERVILARGADGSVMAGPDGLWQVSAAKVSVLSAVGAGDSFVGAYAFGISSGLSAPEALALGAAAASATVTTPGTSLSTRAMIHDLLDQCGASAL
>NZ_CP014595.1|WP_066103630.1|1703271_1704606_-|glutamate--tRNA-ligase
MTTTRFAPSPTGHIHVGNLRTALFNYLIARKAGGTFILRIDDTDAERSKEEYVDGIKRDLEWLGLHWDKTERQSARLDRYHAAADELREMGRFYEAFETPTELDLKRKKLLNMGKPPVYDRAALDLSESEKDALRAERGNGVWRFKLIQERIDWNDGILGDISIDAASVSDPVLIRGDGQILYTLASVVDDMDMGVTNIVRGSDHVTNTATQIQIIEALGGTAPGFAHHSLLTGPQGESLSKRLGVLSIRDLREAGVEPEALLSLMARLGSSQPVELRTSLDEIAEGFELSQFGSAPTKFDEHDLYPLTARKLHQLPLQDVAEELTAIGVPAEKQELFWSVARDNITTRKDIPGWWALFRDGAEPLIADEDRDFIAEAMALLPEGPYTRDTWGEWTKTVKEATGRKGKGLFMPLRKALTGLERGPEMADVLPLLEKIPAKDLAK
>NZ_CP014595.1|WP_066103628.1|1701800_1703030_+|DUF2254-domain-containing-protein
MTPRWLLLLYRLSKRLGVRVLFGALLALVAVALAPVLQPLIPEDWQDRFGADAVTPILQILATTMLTVTTFSLSVMVQAFQSAASQATPRAYRLHLEDSTAQTALAAFTGTFLFSLTSLVLFNAGFYSEASAVVIFFLTIGSIVTVIVAMLRWIGHLSVMGSMDHTLQRVENSALPPLERAMSRPSLGAARPDHALPSDAREVPATKAGYVQYINLEALEEKLSEREAIFRVTAHPGAHLVPGMPLGQISGGHVEAEEICECFTLGEERTMEQDARYGVMVMNEIALRALSPAVNDPGTAIDVVQRLERMLFGLGRPEEGPPEFPHVQMAPLNPAHLVEDGFYPLIRDGAARPEVIGCVLTAMNVLRRADWPALAAAAEDTRAYAFAHAEAAFTIDADKAWLAGKREDA
>NZ_CP014595.1|WP_066103626.1|1701237_1701804_+|gamma-glutamylcyclotransferase
MSTSFFFGYGSLVNRRTHAFDPAHKAVAKGWRRVWARVPGRPVSLLTVSRDAGSEIEGLIAPVTGEGWAVLDQREADYDRTDARADVRHEAPTVEELAIYVVPEADRLPPDTEHPVLLSYLDVVLQGYLGEFGKEGAERFLASTGDWRVPFLNDRDAPLYPRAQSLSDAERGFVDAALLYVGAQVFSR
>NZ_CP014595.1|WP_066103641.1|1712718_1712934_+|DUF2945-domain-containing-protein
MSSFQVGEIVKWNWGAGSATGKIAERFERKVTRQISGEKITRNGSPDAPAFLIEQDDGGRVLKLESELEKT
>NZ_CP014595.1|WP_066103643.1|1713049_1714579_-|deoxyribodipyrimidine-photolyase
MVSRLVLVLGDQLSEDLIALRRADTATDVVVMAEVAAETDYTAHHPKKIALIFAAMRKFAAHLRKEGWEVRYTQLDDTENAGSIPGELLRRAEETGSTEVLATKPGEWRLIEALRDTPLDITLLEDDRFLASHAEFEDWAKGRKALRMEYFYREMRRKTGLLMDGDKPEGGDWNYDSENRKPPPDGIDHGGPMSFTPDETVEEVLDLVEARFPKNFGTLRPFHFATDRGQAKRALAHFIRHALPEFGAYQDAMLDGHKYLNHALVSPYINIGLLSALEVCEAAAEAYRAGDAPLNSVEGFIRQIIGWREYVRGIYFHEGPDYPRRNRLNQQRALPPLYWGAETKMRCLSKAVEQTRDEAYAHHIQRLMVTGNFALIAGIDPAEVHEWYLSVYVDAFEWVEAPNTVGMSQFADGGVIASKPYVSSGAYIDRMSDYCGHCAYKVKQKTGEGACPFNLLYWHFLTRHRERFENNPRMGNMYRTWDRMDEAKRETVLAEAEAFLKRLSAGETV
>NZ_CP014595.1|WP_066103645.1|1714572_1715250_-|SDR-family-oxidoreductase
MTGTQERAIVIGSSGGIGSALAAALETRGTEVTRLSRREHRLDVTDEASVERHLGALEGSFDLILVATGALCPEGAAPEKTLKSLDPAQVMQQMAINALGPALVLKHAMRLLPRDRRAVFAALSARVGSIGDNRLGGWYSYRASKAALNQMIRTASVELARTHKQLACVALHPGTVATPFTAEYLGRHPAVPPEEAAQNLLSVLDGLGPEETGRFFDWAGKEVVW
>NZ_CP014595.1|WP_066106888.1|1715290_1716115_-|GNAT-family-N-acetyltransferase
MLRTMTKADLGHALDWAAKEGWNPGLEDLDPFYAADPEGFFCAELGGNMAAAISVVNHTDRLAFLGLYLCAPAYRGQGIAHALWLHAMKHAGTRTIGLDGVPAQQENYRKSGFVLAGQTKRFAGRLSHGPGKGVQSAAADEHAALIAMEAKACGYAKPRFTAAWLEPAQTRFTLVHREAGKPNGFLTLRGCHVGWKIGPLCAPDLPVAQALLEAAAAHTGEDQVMIDLPAESAALAAHCLAMGMQPVFHTARMYRGPAPLAGRGQNAVGTLELG
>NZ_CP014595.1|WP_083191191.1|1716114_1716828_-|GntR-family-transcriptional-regulator
MTAKEAAPAGRGKGSKGSKARAVADALTLAVHEHRLAPGLKLNEDEVGEIFGVGRTIVRSALQMLAHDQLVTIEPNRGAFVAAPSIREAREVFEARALLEPRTARSAAERMTPEDAARLRRHNAEEHAALDRGEYGTAVRLSGEFHIEIARIADQSTIADFITQLIARSSLVIALYWRRPKAMCETHAHEALLTALEEGDGATAEELMKGHLLDLLSSLDLREAPATPQSLREALRP
>NZ_CP014595.1|WP_066103646.1|1717091_1718075_+|ABC-transporter-ATP-binding-protein
MRQGLDLELVGLTKRYGDTVAVDAINHHFGSGVYACLLGPSGCGKSSTLRMIAGHETVSDGAIVLGGSDISHLPPAKRGTAMMFQSYALFPHLSVADNVAFSLKMKGTDAATRRKKAMEMLALVDMTQFAERLPSQLSGGQQQRVALARALITEPQILLLDEPLSALDPFLRIRMRAELKRLQRELGITFVHVTHGQDEALALADEIVVMNNAVIEQAGPAREVFNSPKTEFVARFMGGHNVLALPQGHFAIRNDLTRIAPQQGAKLDGRVTSVEFQGAHVAVTVLAAGDQDVTAWVPEEQFFSDPKSPGDGVGLVWDDQALHPLSA
>NZ_CP014595.1|WP_066103648.1|1718141_1719407_+|extracellular-solute-binding-protein
MTTKKLSRRGLLKGAAAAGAATAFPAPMIWAQNIKDVTLRQFGTGVSNLNEVAQKVKEDLGFTLEMTALDSDAVTQRAATQPGSFDIADIEYWICKKVWPTGNLQAMDVSKIKNYDKIVGIFKDGKLTPESTIAQGTAPHTVGFTDGPDGTTFADQQTNWMTLIPTIYNADTLGIRPDLIGRPIDTWAELLNPEFKGKASILDISSIGIMDAAMVCEAMGEIAYGDKGNMTREEIDKTMAIFTEAKRAGQFRAFWKTFDESVNLMASGEVVIQSMWSPAITAVKSRGIDCVYQPLKEGYRSWGGGIGLSKNLSGLELDAAYEYINWYLDGWVGGFLMRQGYYSAVPETSKNFMSENEWGYWFEGKEATDTITNPFGDAMAQAGEVRDGGSFEERMGSVACWNAVMDENQYMVRKWNEFIAA
>NZ_CP014595.1|WP_066103650.1|1719523_1720387_+|ABC-transporter-permease
MRAGENNRHLTGWLLASPLTLVLIFFLVLPIAMIVVVSFWKATEFSIIPAFSWENYDFLFGSPVTYRVFGNTIKYALIVWACTLLIGFTVAYFLAFHVRTQTWQIALFLLCTIPFWTSNIIRMISWIPFLGRNGLANSALISAGITDEPLEWLLYSDFSVILAFVHLYTLFMVVPIFNTMMRIDKSLIEAAYDGGASGFQTLTNVIIPLCKPGIMIGTIFVVTLVMGDFVTVRFMSGSQSANVGRLIQNDIALLQYPSASATAVVLLITVLMVIGILLRFVDIRKEL
>NZ_CP014595.1|WP_066103652.1|1720390_1721230_+|ABC-transporter-permease
MESRPRSFYVLGAFFVLFLLFLYGPTFTIAILSFQGPQGGLTFPMRGVSLHWFFDLFEQQAVGDIWGSFRRSFALGLLVMVTTVVVSVAGGLAFRKRFAGNAVLFYLVITSLVIPSILVSLGVGLIFSQLGLPIHWASSGFGSQLTWTLPFGLLIMFAVFNRFDKSFEEAARDQGATNWQTLQHVVLPIIAPSLIGVALFGFTLSYDEFARTLLTAGSYNTLPLEIYGMTTNVTTPVIFALGTLTTAFSLVIIGVFLLTVWSMNKRRAKQGSDAGKGMV
>NZ_CP014595.1|WP_066103654.1|1721229_1721868_+|HyuE-hydantoin-racemase
MAYVIINPNSTAAMTEGMLEVARAAVPGVTLEGWTNAGGPPAIQGHEDGLKAAPSLLELVDKANAEGFEGIIIACFDDTALEDAQARSKVPVIGIGQAAYHIAALRGWSFSVVTTLPISVPIIEGNIIGYGFEHLMGKVRASDVPVLALEEDPDRATEAVAVETARAMAGDGVDCVILGCAGMAKLTAHLRGRFDKPILDGVECAARLITAL

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Crispr_ID: NZ_CP014595_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP014595_1

1711624-1711855

Orphan

Consensus_repeat	Method
GGGCAAGGTCACCTATCCCGACGG	CRISPRCasFinder

3 spacers

The CRISPR arrays of NZ_CP014595_1

>merge|NZ_CP014595|1|1711624-1711855|CRISPRCasFinder
TGCCGAGATCGCCTATCCCGACGGCTCGGTCTACGAGGGCCGCGTGGCCAATGGGTTGCGCGACGGTCAGGGCAAGCTGACCATGCCCGACGGGCTGATCTACGAGGGCACATGGCGTGAGGGCCAGATCGACGGCGTCGGCAAGCTCACCCAGCCCAATGGCGACATCTACGAGGGAGAGCTCGTGGACGGCCGCCGCGAAGGGCAGGGCAAGGTGACCTACGCCAATGGC

>NZ_CP014595|1|1|1711624-1711855|CRISPRCasFinder
TGCCGAGATCGCCTATCCCGACGG	CTCGGTCTACGAGGGCCGCGTGGCCAATGGGTTGCGCGACGGTCA
GGGCAAGCTGACCATGCCCGACGG	GCTGATCTACGAGGGCACATGGCGTGAGGGCCAGATCGACGGCGT
CGGCAAGCTCACCCAGCCCAATGG	CGACATCTACGAGGGAGAGCTCGTGGACGGCCGCCGCGAAGGGCA
GGGCAAGGTGACCTACGCCAATGGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP014595.1\|WP_066103643.1\|1713049_1714579_-\|deoxyribodipyrimidine-photolyase	unknown	unknown	gnl\|CDD\|225588
NZ_CP014595.1\|WP_066103646.1\|1717091_1718075_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|226361
NZ_CP014595.1\|WP_066103628.1\|1701800_1703030_+\|DUF2254-domain-containing-protein	unknown	unknown	gnl\|CDD\|378351
NZ_CP014595.1\|WP_066106888.1\|1715290_1716115_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|380091
NZ_CP014595.1\|WP_066103632.1\|1704706_1705654_+\|1-phosphofructokinase-family-hexose-kinase	unknown	unknown	gnl\|CDD\|238570
NZ_CP014595.1\|WP_066103638.1\|1709281_1710940_-\|NAD+-synthase	unknown	unknown	gnl\|CDD\|237577
NZ_CP014595.1\|WP_066106880.1\|1706739_1706949_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP014595.1\|WP_066106883.1\|1708850_1709252_+\|metallopeptidase-family-protein	unknown	unknown	gnl\|CDD\|240572
NZ_CP014595.1\|WP_066103650.1\|1719523_1720387_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224097
NZ_CP014595.1\|WP_066103652.1\|1720390_1721230_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224098
NZ_CP014595.1\|WP_066103654.1\|1721229_1721868_+\|HyuE-hydantoin-racemase	unknown	unknown	gnl\|CDD\|226611
NZ_CP014595.1\|WP_066103648.1\|1718141_1719407_+\|extracellular-solute-binding-protein	unknown	unknown	gnl\|CDD\|223759
NZ_CP014595.1\|WP_157374024.1\|1707130_1708075_+\|MBL-fold-metallo-hydrolase	unknown	unknown	gnl\|CDD\|293806
NZ_CP014595.1\|WP_066103645.1\|1714572_1715250_-\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|181609
NZ_CP014595.1\|WP_066103641.1\|1712718_1712934_+\|DUF2945-domain-containing-protein	unknown	unknown	gnl\|CDD\|378576
NZ_CP014595.1\|WP_066103626.1\|1701237_1701804_+\|gamma-glutamylcyclotransferase	unknown	unknown	gnl\|CDD\|119400
NZ_CP014595.1\|WP_083191191.1\|1716114_1716828_-\|GntR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224715
NZ_CP014595.1\|WP_066103630.1\|1703271_1704606_-\|glutamate--tRNA-ligase	unknown	unknown	gnl\|CDD\|183594
NZ_CP014595.1\|WP_066103637.1\|1708102_1708654_-\|2OG-Fe(II)-oxygenase	unknown	unknown	gnl\|CDD\|379309
NZ_CP014595.1\|WP_066103633.1\|1705732_1706728_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP014595.1\|WP_066103646.1\|1717091_1718075_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|226361	COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism].	1.56355e-135
NZ_CP014595.1\|WP_066103641.1\|1712718_1712934_+\|DUF2945-domain-containing-protein	gnl\|CDD\|378576	pfam11160, DUF2945, Protein of unknown function (DUF2945). This family of proteins has no known function.	3.64783e-16
NZ_CP014595.1\|WP_066106888.1\|1715290_1716115_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|380091	pfam18014, Acetyltransf_18, Acetyltransferase (GNAT) domain. This entry represents a likely acetyltransferase enzyme that is related to pfam06852.	5.78878e-23
NZ_CP014595.1\|WP_066103632.1\|1704706_1705654_+\|1-phosphofructokinase-family-hexose-kinase	gnl\|CDD\|238570	cd01164, FruK_PfkB_like, 1-phosphofructokinase (FruK), minor 6-phosphofructokinase (pfkB) and related sugar kinases. FruK plays an important role in the predominant pathway for fructose utilisation.This group also contains tagatose-6-phophate kinase, an enzyme of the tagatose 6-phosphate pathway, which responsible for breakdown of the galactose moiety during lactose metabolism by bacteria such as L. lactis.	1.15896e-85
NZ_CP014595.1\|WP_066103638.1\|1709281_1710940_-\|NAD+-synthase	gnl\|CDD\|237577	PRK13981, PRK13981, NAD synthetase; Provisional.	0
NZ_CP014595.1\|WP_066103654.1\|1721229_1721868_+\|HyuE-hydantoin-racemase	gnl\|CDD\|226611	COG4126, COG4126, Hydantoin racemase [Amino acid transport and metabolism].	1.56415e-54
NZ_CP014595.1\|WP_066106883.1\|1708850_1709252_+\|metallopeptidase-family-protein	gnl\|CDD\|240572	cd12952, MMP_ACEL2062, Minimal MMP-like domain found in Acidothermus cellulolyticus hypothetical protein ACEL2062 and similar protein. The subfamily includes an uncharacterized protein from Acidothermus cellulolyticus (ACEL2062) and its homologs from bacteria. Although its biological role remains unclear, ACEL2062 contains a minimal metalloprotease (MMP)-like domain consisting of 3-stranded mixed 2-beta sheets and a HExxHxxGxxD/S (x could be any amino acid) motif. It may belong to a superfamily of bacterial zinc metallo-peptidases, which is characterized by a conserved HExxHxxGxxD motif.	2.22912e-49
NZ_CP014595.1\|WP_066103650.1\|1719523_1720387_+\|ABC-transporter-permease	gnl\|CDD\|224097	COG1176, PotB, ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport and metabolism].	2.80025e-71
NZ_CP014595.1\|WP_066103652.1\|1720390_1721230_+\|ABC-transporter-permease	gnl\|CDD\|224098	COG1177, PotC, ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism].	3.06452e-55
NZ_CP014595.1\|WP_066103648.1\|1718141_1719407_+\|extracellular-solute-binding-protein	gnl\|CDD\|223759	COG0687, PotD, Spermidine/putrescine-binding periplasmic protein [Amino acid transport and metabolism].	4.81006e-23
NZ_CP014595.1\|WP_066103637.1\|1708102_1708654_-\|2OG-Fe(II)-oxygenase	gnl\|CDD\|379309	pfam13640, 2OG-FeII_Oxy_3, 2OG-Fe(II) oxygenase superfamily. This family contains members of the 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily.	2.79691e-20
NZ_CP014595.1\|WP_157374024.1\|1707130_1708075_+\|MBL-fold-metallo-hydrolase	gnl\|CDD\|293806	cd07720, OPHC2-like_MBL-fold, Pseudomonas pseudoalcaligenes organophosphorus hydrolase C2, and related proteins; MBL-fold metallo hydrolase domain. Pseudomonas pseudoalcaligenes OPHC2 is a thermostable organophosphorus hydrolase which a broad substrate activity spectrum: it hydrolyzes various phosphotriesters, esters, and a lactone. This subgroup also includes Pseudomonas oleovorans PoOPH which exhibits high lactonase and esterase activities, and latent PTE activity. However, double mutations His250Ile/Ile263Trp switch PoOPH into an efficient and thermostable PTE. Members of this subgroup belong to the MBL-fold metallo-hydrolase superfamily which is comprised mainly of hydrolytic enzymes which carry out a variety of biological functions.	1.47914e-85
NZ_CP014595.1\|WP_066103645.1\|1714572_1715250_-\|SDR-family-oxidoreductase	gnl\|CDD\|181609	PRK09009, PRK09009, SDR family oxidoreductase.	1.17359e-59
NZ_CP014595.1\|WP_066103643.1\|1713049_1714579_-\|deoxyribodipyrimidine-photolyase	gnl\|CDD\|225588	COG3046, COG3046, Uncharacterized protein related to deoxyribodipyrimidine photolyase [General function prediction only].	0
NZ_CP014595.1\|WP_066103626.1\|1701237_1701804_+\|gamma-glutamylcyclotransferase	gnl\|CDD\|119400	cd06661, GGCT_like, GGCT-like domains, also called AIG2-like family. Gamma-glutamyl cyclotransferase (GGCT) catalyzes the formation of pyroglutamic acid (5-oxoproline) from dipeptides containing gamma-glutamyl, and is a dimeric protein. In Homo sapiens, the protein is encoded by the gene C7orf24, and the enzyme participates in the gamma-glutamyl cycle. Hereditary defects in the gamma-glutamyl cycle have been described for some of the genes involved, but not for C7orf24. The synthesis and metabolism of glutathione (L-gamma-glutamyl-L-cysteinylglycine) ties the gamma-glutamyl cycle to numerous cellular processes; glutathione acts as a ubiquitous reducing agent in reductive mechanisms involved in protein and DNA synthesis, transport processes, enzyme activity, and metabolism. AIG2 (avrRpt2-induced gene) is an Arabidopsis protein that exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae pv maculicola strain ES4326 carrying avrRpt2. avrRpt2 is an avirulence gene that can convert virulent strains of P. syringae to avirulence on Arabidopsis thaliana, soybean, and bean. The family also includes bacterial tellurite-resistance proteins (trgB); tellurium (Te) compounds are used in industrial processes and had been used as antimicrobial agents in the past. Some members have been described proteins involved in cation transport (chaC).	2.15743e-06
NZ_CP014595.1\|WP_083191191.1\|1716114_1716828_-\|GntR-family-transcriptional-regulator	gnl\|CDD\|224715	COG1802, GntR, Transcriptional regulators [Transcription].	5.68239e-43
NZ_CP014595.1\|WP_066103630.1\|1703271_1704606_-\|glutamate--tRNA-ligase	gnl\|CDD\|183594	PRK12558, PRK12558, glutamyl-tRNA synthetase; Provisional.	0
NZ_CP014595.1\|WP_066103628.1\|1701800_1703030_+\|DUF2254-domain-containing-protein	gnl\|CDD\|378351	pfam10011, DUF2254, Predicted membrane protein (DUF2254). Members of this family of bacterial proteins comprises various hypothetical and putative membrane proteins. Their exact function, has not, as yet, been defined.	2.64168e-95

>NZ_CP014595.1|WP_066103638.1|1709281_1710940_-|NAD+-synthase
MADRFRLTIAQLNPTVGDLAGNAAKAKDAWKKGRDAGAQLVALPEMFIAGYNAQDLPKKHAFTLDCMEVAQKLAEDCADGPALAIGCPWIEGTELYNAYLICRGGRIVTHVFKHHLPNYGVFDEVRVFDSGAIGGPYAVGNVRIGSPICEDAWYEDVAETHAETGAEFLLVPNGSPYRRNKHETRLNKMVARVVETGLPLIYLNMVGGQDDQIFDGGSFVLNPGGQAALQLPVFEEEIAHVDLVRTPEGWRAEDGRFVQHPDDMEQDYHAMVLSLRDYCRKTGFGKVLLGMSGGIDSALVATIATDALGAENVRCVMLPSEYTSEHSLEDAKACATNLGCHYDFVPIAEGRDAITKTLAPLFAGRDADLTEENIQSRLRGLLLMALSNKFGEMLLTTGNKSEVAVGYATIYGDMAGGYNPIKDLYKTRVFAICRWRNENQRPWMNGPDGEVIPERIITKPPSAELREDQKDSDSLPDYPVLDGILEILVDRDGSIADCVAAGYDRADAKKVEHLLYISEYKRFQAAPGARLSQKAFWLDRRYPIANRWRDNG
>NZ_CP014595.1|WP_066106883.1|1708850_1709252_+|metallopeptidase-family-protein
MTTPDTAPDLAAFETMARAAVNALPEPFRAAAAEVVLQVEDWPPEDILQEMQIDDRLDLTGLYEGVPMTEKSSSWPSPYPDTVWLFREPILQEWRDRGDVELDALIAHVTMHEFAHHFGWSDDDIASIDRWWE
>NZ_CP014595.1|WP_066103637.1|1708102_1708654_-|2OG-Fe(II)-oxygenase
MITVHSIPQAFSEVDCSRLIEISRNAEASDARLVGQQRAHNMRRADLVWLDDVEDTGWVMDRIIELVRDANRSAYDFALDAFDESAQVARYGAEREGHFDWHSDIGEGRLAARRKLTMVVQLSDEGAYEGGALELMPSNHVVAAKKERGTATLFPSYMLHRVTPVTGGERHSLTIWAHGPAFR
>NZ_CP014595.1|WP_157374024.1|1707130_1708075_+|MBL-fold-metallo-hydrolase
MTNMEKNKMTRRSALTAAAALPLAAGLTGAGARPAAAQSAQGPQVPRTYRVPLGDFEVTAMMAGTRTVPEPKGTFGLNASDEEFAEVSKAAHIPTDKAQFFFTPTLVNTGSAVILFDTGLDPAGITAAVEAAGYAPEDVTHVVITHMHGDHIGGLSDGGTPTFGNAALLTGQEEWNHWTEAANDTFESKVRPLEDQFSFLGNGEEVAPGITSVLAPGHTPGHMCFMLESGGQKLMLTADLANHYVWSVGKPDWEVRFDMDKELAASSRRKIFGTLAEDKTPFIGYHMPFPAVGYVEAEGDGFRYVPHSYQLLMT
>NZ_CP014595.1|WP_066106880.1|1706739_1706949_-|hypothetical-protein
MIPDASNPCWRRVLSSEAELSGAVLATKILVTRLRREVKASPAQMSGKIAELRGYFEKNAFATKDIALF
>NZ_CP014595.1|WP_066103633.1|1705732_1706728_-|hypothetical-protein
MKNQMMTPEQAAARIDAGATLVIAGDEEVLTKLPRGRWIGGTTVYFMTETGGHVDRENVFVTELEAAEDARAVLYEGEDLPSLTMGRFDNGLSVILIPAFSKAHEAYAIHGAEYPGLFDQPVMGWITGVHLDELASATPKVIDGTTGRVHQEGALVLHVKLSASRSANVEILNLFTQDDNGPEITFPATGFAAETARINGAEVDFAKWVEAQGIDTRLPLVANYAGALVNVSFQSVGPEGVAFYAPVIEGVSYRLAASPGDYTTVFARQAQGDGAQELSCNCILNFLFGELQDKRTGSFTGPVTFGEIAYILLNQTMVRLQLHGQDQAAVA
>NZ_CP014595.1|WP_066103632.1|1704706_1705654_+|1-phosphofructokinase-family-hexose-kinase
MRDILTVTLNPALDLSTTADRVEAGPKLRCDAPAIDPGGGGINVARLAAELGGPARAFVALSGPTGMRLEAALAELGLPMVRMKAPGETRESFAVHDRQTGAQYRFVMPGPVWSAGDVMDALDAISSTVPQGGIVVLSGSQPPGVPDDFPTELCRALKGRGAYVIVDTSGPVLEALARGTDPAPAVLRMDSLEAEELAGRPLMTRADSAGFAAELVARGAAERVILARGADGSVMAGPDGLWQVSAAKVSVLSAVGAGDSFVGAYAFGISSGLSAPEALALGAAAASATVTTPGTSLSTRAMIHDLLDQCGASAL
>NZ_CP014595.1|WP_066103630.1|1703271_1704606_-|glutamate--tRNA-ligase
MTTTRFAPSPTGHIHVGNLRTALFNYLIARKAGGTFILRIDDTDAERSKEEYVDGIKRDLEWLGLHWDKTERQSARLDRYHAAADELREMGRFYEAFETPTELDLKRKKLLNMGKPPVYDRAALDLSESEKDALRAERGNGVWRFKLIQERIDWNDGILGDISIDAASVSDPVLIRGDGQILYTLASVVDDMDMGVTNIVRGSDHVTNTATQIQIIEALGGTAPGFAHHSLLTGPQGESLSKRLGVLSIRDLREAGVEPEALLSLMARLGSSQPVELRTSLDEIAEGFELSQFGSAPTKFDEHDLYPLTARKLHQLPLQDVAEELTAIGVPAEKQELFWSVARDNITTRKDIPGWWALFRDGAEPLIADEDRDFIAEAMALLPEGPYTRDTWGEWTKTVKEATGRKGKGLFMPLRKALTGLERGPEMADVLPLLEKIPAKDLAK
>NZ_CP014595.1|WP_066103628.1|1701800_1703030_+|DUF2254-domain-containing-protein
MTPRWLLLLYRLSKRLGVRVLFGALLALVAVALAPVLQPLIPEDWQDRFGADAVTPILQILATTMLTVTTFSLSVMVQAFQSAASQATPRAYRLHLEDSTAQTALAAFTGTFLFSLTSLVLFNAGFYSEASAVVIFFLTIGSIVTVIVAMLRWIGHLSVMGSMDHTLQRVENSALPPLERAMSRPSLGAARPDHALPSDAREVPATKAGYVQYINLEALEEKLSEREAIFRVTAHPGAHLVPGMPLGQISGGHVEAEEICECFTLGEERTMEQDARYGVMVMNEIALRALSPAVNDPGTAIDVVQRLERMLFGLGRPEEGPPEFPHVQMAPLNPAHLVEDGFYPLIRDGAARPEVIGCVLTAMNVLRRADWPALAAAAEDTRAYAFAHAEAAFTIDADKAWLAGKREDA
>NZ_CP014595.1|WP_066103626.1|1701237_1701804_+|gamma-glutamylcyclotransferase
MSTSFFFGYGSLVNRRTHAFDPAHKAVAKGWRRVWARVPGRPVSLLTVSRDAGSEIEGLIAPVTGEGWAVLDQREADYDRTDARADVRHEAPTVEELAIYVVPEADRLPPDTEHPVLLSYLDVVLQGYLGEFGKEGAERFLASTGDWRVPFLNDRDAPLYPRAQSLSDAERGFVDAALLYVGAQVFSR
>NZ_CP014595.1|WP_066103641.1|1712718_1712934_+|DUF2945-domain-containing-protein
MSSFQVGEIVKWNWGAGSATGKIAERFERKVTRQISGEKITRNGSPDAPAFLIEQDDGGRVLKLESELEKT
>NZ_CP014595.1|WP_066103643.1|1713049_1714579_-|deoxyribodipyrimidine-photolyase
MVSRLVLVLGDQLSEDLIALRRADTATDVVVMAEVAAETDYTAHHPKKIALIFAAMRKFAAHLRKEGWEVRYTQLDDTENAGSIPGELLRRAEETGSTEVLATKPGEWRLIEALRDTPLDITLLEDDRFLASHAEFEDWAKGRKALRMEYFYREMRRKTGLLMDGDKPEGGDWNYDSENRKPPPDGIDHGGPMSFTPDETVEEVLDLVEARFPKNFGTLRPFHFATDRGQAKRALAHFIRHALPEFGAYQDAMLDGHKYLNHALVSPYINIGLLSALEVCEAAAEAYRAGDAPLNSVEGFIRQIIGWREYVRGIYFHEGPDYPRRNRLNQQRALPPLYWGAETKMRCLSKAVEQTRDEAYAHHIQRLMVTGNFALIAGIDPAEVHEWYLSVYVDAFEWVEAPNTVGMSQFADGGVIASKPYVSSGAYIDRMSDYCGHCAYKVKQKTGEGACPFNLLYWHFLTRHRERFENNPRMGNMYRTWDRMDEAKRETVLAEAEAFLKRLSAGETV
>NZ_CP014595.1|WP_066103645.1|1714572_1715250_-|SDR-family-oxidoreductase
MTGTQERAIVIGSSGGIGSALAAALETRGTEVTRLSRREHRLDVTDEASVERHLGALEGSFDLILVATGALCPEGAAPEKTLKSLDPAQVMQQMAINALGPALVLKHAMRLLPRDRRAVFAALSARVGSIGDNRLGGWYSYRASKAALNQMIRTASVELARTHKQLACVALHPGTVATPFTAEYLGRHPAVPPEEAAQNLLSVLDGLGPEETGRFFDWAGKEVVW
>NZ_CP014595.1|WP_066106888.1|1715290_1716115_-|GNAT-family-N-acetyltransferase
MLRTMTKADLGHALDWAAKEGWNPGLEDLDPFYAADPEGFFCAELGGNMAAAISVVNHTDRLAFLGLYLCAPAYRGQGIAHALWLHAMKHAGTRTIGLDGVPAQQENYRKSGFVLAGQTKRFAGRLSHGPGKGVQSAAADEHAALIAMEAKACGYAKPRFTAAWLEPAQTRFTLVHREAGKPNGFLTLRGCHVGWKIGPLCAPDLPVAQALLEAAAAHTGEDQVMIDLPAESAALAAHCLAMGMQPVFHTARMYRGPAPLAGRGQNAVGTLELG
>NZ_CP014595.1|WP_083191191.1|1716114_1716828_-|GntR-family-transcriptional-regulator
MTAKEAAPAGRGKGSKGSKARAVADALTLAVHEHRLAPGLKLNEDEVGEIFGVGRTIVRSALQMLAHDQLVTIEPNRGAFVAAPSIREAREVFEARALLEPRTARSAAERMTPEDAARLRRHNAEEHAALDRGEYGTAVRLSGEFHIEIARIADQSTIADFITQLIARSSLVIALYWRRPKAMCETHAHEALLTALEEGDGATAEELMKGHLLDLLSSLDLREAPATPQSLREALRP
>NZ_CP014595.1|WP_066103646.1|1717091_1718075_+|ABC-transporter-ATP-binding-protein
MRQGLDLELVGLTKRYGDTVAVDAINHHFGSGVYACLLGPSGCGKSSTLRMIAGHETVSDGAIVLGGSDISHLPPAKRGTAMMFQSYALFPHLSVADNVAFSLKMKGTDAATRRKKAMEMLALVDMTQFAERLPSQLSGGQQQRVALARALITEPQILLLDEPLSALDPFLRIRMRAELKRLQRELGITFVHVTHGQDEALALADEIVVMNNAVIEQAGPAREVFNSPKTEFVARFMGGHNVLALPQGHFAIRNDLTRIAPQQGAKLDGRVTSVEFQGAHVAVTVLAAGDQDVTAWVPEEQFFSDPKSPGDGVGLVWDDQALHPLSA
>NZ_CP014595.1|WP_066103648.1|1718141_1719407_+|extracellular-solute-binding-protein
MTTKKLSRRGLLKGAAAAGAATAFPAPMIWAQNIKDVTLRQFGTGVSNLNEVAQKVKEDLGFTLEMTALDSDAVTQRAATQPGSFDIADIEYWICKKVWPTGNLQAMDVSKIKNYDKIVGIFKDGKLTPESTIAQGTAPHTVGFTDGPDGTTFADQQTNWMTLIPTIYNADTLGIRPDLIGRPIDTWAELLNPEFKGKASILDISSIGIMDAAMVCEAMGEIAYGDKGNMTREEIDKTMAIFTEAKRAGQFRAFWKTFDESVNLMASGEVVIQSMWSPAITAVKSRGIDCVYQPLKEGYRSWGGGIGLSKNLSGLELDAAYEYINWYLDGWVGGFLMRQGYYSAVPETSKNFMSENEWGYWFEGKEATDTITNPFGDAMAQAGEVRDGGSFEERMGSVACWNAVMDENQYMVRKWNEFIAA
>NZ_CP014595.1|WP_066103650.1|1719523_1720387_+|ABC-transporter-permease
MRAGENNRHLTGWLLASPLTLVLIFFLVLPIAMIVVVSFWKATEFSIIPAFSWENYDFLFGSPVTYRVFGNTIKYALIVWACTLLIGFTVAYFLAFHVRTQTWQIALFLLCTIPFWTSNIIRMISWIPFLGRNGLANSALISAGITDEPLEWLLYSDFSVILAFVHLYTLFMVVPIFNTMMRIDKSLIEAAYDGGASGFQTLTNVIIPLCKPGIMIGTIFVVTLVMGDFVTVRFMSGSQSANVGRLIQNDIALLQYPSASATAVVLLITVLMVIGILLRFVDIRKEL
>NZ_CP014595.1|WP_066103652.1|1720390_1721230_+|ABC-transporter-permease
MESRPRSFYVLGAFFVLFLLFLYGPTFTIAILSFQGPQGGLTFPMRGVSLHWFFDLFEQQAVGDIWGSFRRSFALGLLVMVTTVVVSVAGGLAFRKRFAGNAVLFYLVITSLVIPSILVSLGVGLIFSQLGLPIHWASSGFGSQLTWTLPFGLLIMFAVFNRFDKSFEEAARDQGATNWQTLQHVVLPIIAPSLIGVALFGFTLSYDEFARTLLTAGSYNTLPLEIYGMTTNVTTPVIFALGTLTTAFSLVIIGVFLLTVWSMNKRRAKQGSDAGKGMV
>NZ_CP014595.1|WP_066103654.1|1721229_1721868_+|HyuE-hydantoin-racemase
MAYVIINPNSTAAMTEGMLEVARAAVPGVTLEGWTNAGGPPAIQGHEDGLKAAPSLLELVDKANAEGFEGIIIACFDDTALEDAQARSKVPVIGIGQAAYHIAALRGWSFSVVTTLPISVPIIEGNIIGYGFEHLMGKVRASDVPVLALEEDPDRATEAVAVETARAMAGDGVDCVILGCAGMAKLTAHLRGRFDKPILDGVECAARLITAL

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Crispr_ID: NZ_CP014595_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP014595_3

1712176-1712337

Orphan

Consensus_repeat	Method
GGGCAAGGTCACCTATCCCGACGG	CRISPRCasFinder

2 spacers

The CRISPR arrays of NZ_CP014595_3

>merge|NZ_CP014595|3|1712176-1712337|CRISPRCasFinder
GGGCGTGATGACCTACCCCGACGGTTACCGCTACGAGGGTGACTGGCAGGACGGTCAGCGCCATGGCGAAGGCACGGCCACCTATCCCGACGGCACGGTTTACACCGGTGCCTTCCGCGACGGCCAGCGCCACGGGCAGGGCAAGATCACCATGCCCGACGG

>NZ_CP014595|3|3|1712176-1712337|CRISPRCasFinder
GGGCGTGATGACCTACCCCGACGG	TTACCGCTACGAGGGTGACTGGCAGGACGGTCAGCGCCATGGCGA
AGGCACGGCCACCTATCCCGACGG	CACGGTTTACACCGGTGCCTTCCGCGACGGCCAGCGCCACGGGCA
GGGCAAGATCACCATGCCCGACGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP014595.1\|WP_066103643.1\|1713049_1714579_-\|deoxyribodipyrimidine-photolyase	unknown	unknown	gnl\|CDD\|225588
NZ_CP014595.1\|WP_066103646.1\|1717091_1718075_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|226361
NZ_CP014595.1\|WP_066103628.1\|1701800_1703030_+\|DUF2254-domain-containing-protein	unknown	unknown	gnl\|CDD\|378351
NZ_CP014595.1\|WP_066106888.1\|1715290_1716115_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|380091
NZ_CP014595.1\|WP_066103632.1\|1704706_1705654_+\|1-phosphofructokinase-family-hexose-kinase	unknown	unknown	gnl\|CDD\|238570
NZ_CP014595.1\|WP_066103638.1\|1709281_1710940_-\|NAD+-synthase	unknown	unknown	gnl\|CDD\|237577
NZ_CP014595.1\|WP_066106880.1\|1706739_1706949_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP014595.1\|WP_066106883.1\|1708850_1709252_+\|metallopeptidase-family-protein	unknown	unknown	gnl\|CDD\|240572
NZ_CP014595.1\|WP_066103650.1\|1719523_1720387_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224097
NZ_CP014595.1\|WP_066103652.1\|1720390_1721230_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224098
NZ_CP014595.1\|WP_066103654.1\|1721229_1721868_+\|HyuE-hydantoin-racemase	unknown	unknown	gnl\|CDD\|226611
NZ_CP014595.1\|WP_066103648.1\|1718141_1719407_+\|extracellular-solute-binding-protein	unknown	unknown	gnl\|CDD\|223759
NZ_CP014595.1\|WP_157374024.1\|1707130_1708075_+\|MBL-fold-metallo-hydrolase	unknown	unknown	gnl\|CDD\|293806
NZ_CP014595.1\|WP_066103645.1\|1714572_1715250_-\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|181609
NZ_CP014595.1\|WP_066103641.1\|1712718_1712934_+\|DUF2945-domain-containing-protein	unknown	unknown	gnl\|CDD\|378576
NZ_CP014595.1\|WP_066103626.1\|1701237_1701804_+\|gamma-glutamylcyclotransferase	unknown	unknown	gnl\|CDD\|119400
NZ_CP014595.1\|WP_083191191.1\|1716114_1716828_-\|GntR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224715
NZ_CP014595.1\|WP_066103630.1\|1703271_1704606_-\|glutamate--tRNA-ligase	unknown	unknown	gnl\|CDD\|183594
NZ_CP014595.1\|WP_066103637.1\|1708102_1708654_-\|2OG-Fe(II)-oxygenase	unknown	unknown	gnl\|CDD\|379309
NZ_CP014595.1\|WP_066103633.1\|1705732_1706728_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP014595.1\|WP_066103646.1\|1717091_1718075_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|226361	COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism].	1.56355e-135
NZ_CP014595.1\|WP_066103641.1\|1712718_1712934_+\|DUF2945-domain-containing-protein	gnl\|CDD\|378576	pfam11160, DUF2945, Protein of unknown function (DUF2945). This family of proteins has no known function.	3.64783e-16
NZ_CP014595.1\|WP_066106888.1\|1715290_1716115_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|380091	pfam18014, Acetyltransf_18, Acetyltransferase (GNAT) domain. This entry represents a likely acetyltransferase enzyme that is related to pfam06852.	5.78878e-23
NZ_CP014595.1\|WP_066103632.1\|1704706_1705654_+\|1-phosphofructokinase-family-hexose-kinase	gnl\|CDD\|238570	cd01164, FruK_PfkB_like, 1-phosphofructokinase (FruK), minor 6-phosphofructokinase (pfkB) and related sugar kinases. FruK plays an important role in the predominant pathway for fructose utilisation.This group also contains tagatose-6-phophate kinase, an enzyme of the tagatose 6-phosphate pathway, which responsible for breakdown of the galactose moiety during lactose metabolism by bacteria such as L. lactis.	1.15896e-85
NZ_CP014595.1\|WP_066103638.1\|1709281_1710940_-\|NAD+-synthase	gnl\|CDD\|237577	PRK13981, PRK13981, NAD synthetase; Provisional.	0
NZ_CP014595.1\|WP_066103654.1\|1721229_1721868_+\|HyuE-hydantoin-racemase	gnl\|CDD\|226611	COG4126, COG4126, Hydantoin racemase [Amino acid transport and metabolism].	1.56415e-54
NZ_CP014595.1\|WP_066106883.1\|1708850_1709252_+\|metallopeptidase-family-protein	gnl\|CDD\|240572	cd12952, MMP_ACEL2062, Minimal MMP-like domain found in Acidothermus cellulolyticus hypothetical protein ACEL2062 and similar protein. The subfamily includes an uncharacterized protein from Acidothermus cellulolyticus (ACEL2062) and its homologs from bacteria. Although its biological role remains unclear, ACEL2062 contains a minimal metalloprotease (MMP)-like domain consisting of 3-stranded mixed 2-beta sheets and a HExxHxxGxxD/S (x could be any amino acid) motif. It may belong to a superfamily of bacterial zinc metallo-peptidases, which is characterized by a conserved HExxHxxGxxD motif.	2.22912e-49
NZ_CP014595.1\|WP_066103650.1\|1719523_1720387_+\|ABC-transporter-permease	gnl\|CDD\|224097	COG1176, PotB, ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport and metabolism].	2.80025e-71
NZ_CP014595.1\|WP_066103652.1\|1720390_1721230_+\|ABC-transporter-permease	gnl\|CDD\|224098	COG1177, PotC, ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism].	3.06452e-55
NZ_CP014595.1\|WP_066103648.1\|1718141_1719407_+\|extracellular-solute-binding-protein	gnl\|CDD\|223759	COG0687, PotD, Spermidine/putrescine-binding periplasmic protein [Amino acid transport and metabolism].	4.81006e-23
NZ_CP014595.1\|WP_066103637.1\|1708102_1708654_-\|2OG-Fe(II)-oxygenase	gnl\|CDD\|379309	pfam13640, 2OG-FeII_Oxy_3, 2OG-Fe(II) oxygenase superfamily. This family contains members of the 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily.	2.79691e-20
NZ_CP014595.1\|WP_157374024.1\|1707130_1708075_+\|MBL-fold-metallo-hydrolase	gnl\|CDD\|293806	cd07720, OPHC2-like_MBL-fold, Pseudomonas pseudoalcaligenes organophosphorus hydrolase C2, and related proteins; MBL-fold metallo hydrolase domain. Pseudomonas pseudoalcaligenes OPHC2 is a thermostable organophosphorus hydrolase which a broad substrate activity spectrum: it hydrolyzes various phosphotriesters, esters, and a lactone. This subgroup also includes Pseudomonas oleovorans PoOPH which exhibits high lactonase and esterase activities, and latent PTE activity. However, double mutations His250Ile/Ile263Trp switch PoOPH into an efficient and thermostable PTE. Members of this subgroup belong to the MBL-fold metallo-hydrolase superfamily which is comprised mainly of hydrolytic enzymes which carry out a variety of biological functions.	1.47914e-85
NZ_CP014595.1\|WP_066103645.1\|1714572_1715250_-\|SDR-family-oxidoreductase	gnl\|CDD\|181609	PRK09009, PRK09009, SDR family oxidoreductase.	1.17359e-59
NZ_CP014595.1\|WP_066103643.1\|1713049_1714579_-\|deoxyribodipyrimidine-photolyase	gnl\|CDD\|225588	COG3046, COG3046, Uncharacterized protein related to deoxyribodipyrimidine photolyase [General function prediction only].	0
NZ_CP014595.1\|WP_066103626.1\|1701237_1701804_+\|gamma-glutamylcyclotransferase	gnl\|CDD\|119400	cd06661, GGCT_like, GGCT-like domains, also called AIG2-like family. Gamma-glutamyl cyclotransferase (GGCT) catalyzes the formation of pyroglutamic acid (5-oxoproline) from dipeptides containing gamma-glutamyl, and is a dimeric protein. In Homo sapiens, the protein is encoded by the gene C7orf24, and the enzyme participates in the gamma-glutamyl cycle. Hereditary defects in the gamma-glutamyl cycle have been described for some of the genes involved, but not for C7orf24. The synthesis and metabolism of glutathione (L-gamma-glutamyl-L-cysteinylglycine) ties the gamma-glutamyl cycle to numerous cellular processes; glutathione acts as a ubiquitous reducing agent in reductive mechanisms involved in protein and DNA synthesis, transport processes, enzyme activity, and metabolism. AIG2 (avrRpt2-induced gene) is an Arabidopsis protein that exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae pv maculicola strain ES4326 carrying avrRpt2. avrRpt2 is an avirulence gene that can convert virulent strains of P. syringae to avirulence on Arabidopsis thaliana, soybean, and bean. The family also includes bacterial tellurite-resistance proteins (trgB); tellurium (Te) compounds are used in industrial processes and had been used as antimicrobial agents in the past. Some members have been described proteins involved in cation transport (chaC).	2.15743e-06
NZ_CP014595.1\|WP_083191191.1\|1716114_1716828_-\|GntR-family-transcriptional-regulator	gnl\|CDD\|224715	COG1802, GntR, Transcriptional regulators [Transcription].	5.68239e-43
NZ_CP014595.1\|WP_066103630.1\|1703271_1704606_-\|glutamate--tRNA-ligase	gnl\|CDD\|183594	PRK12558, PRK12558, glutamyl-tRNA synthetase; Provisional.	0
NZ_CP014595.1\|WP_066103628.1\|1701800_1703030_+\|DUF2254-domain-containing-protein	gnl\|CDD\|378351	pfam10011, DUF2254, Predicted membrane protein (DUF2254). Members of this family of bacterial proteins comprises various hypothetical and putative membrane proteins. Their exact function, has not, as yet, been defined.	2.64168e-95

>NZ_CP014595.1|WP_066103638.1|1709281_1710940_-|NAD+-synthase
MADRFRLTIAQLNPTVGDLAGNAAKAKDAWKKGRDAGAQLVALPEMFIAGYNAQDLPKKHAFTLDCMEVAQKLAEDCADGPALAIGCPWIEGTELYNAYLICRGGRIVTHVFKHHLPNYGVFDEVRVFDSGAIGGPYAVGNVRIGSPICEDAWYEDVAETHAETGAEFLLVPNGSPYRRNKHETRLNKMVARVVETGLPLIYLNMVGGQDDQIFDGGSFVLNPGGQAALQLPVFEEEIAHVDLVRTPEGWRAEDGRFVQHPDDMEQDYHAMVLSLRDYCRKTGFGKVLLGMSGGIDSALVATIATDALGAENVRCVMLPSEYTSEHSLEDAKACATNLGCHYDFVPIAEGRDAITKTLAPLFAGRDADLTEENIQSRLRGLLLMALSNKFGEMLLTTGNKSEVAVGYATIYGDMAGGYNPIKDLYKTRVFAICRWRNENQRPWMNGPDGEVIPERIITKPPSAELREDQKDSDSLPDYPVLDGILEILVDRDGSIADCVAAGYDRADAKKVEHLLYISEYKRFQAAPGARLSQKAFWLDRRYPIANRWRDNG
>NZ_CP014595.1|WP_066106883.1|1708850_1709252_+|metallopeptidase-family-protein
MTTPDTAPDLAAFETMARAAVNALPEPFRAAAAEVVLQVEDWPPEDILQEMQIDDRLDLTGLYEGVPMTEKSSSWPSPYPDTVWLFREPILQEWRDRGDVELDALIAHVTMHEFAHHFGWSDDDIASIDRWWE
>NZ_CP014595.1|WP_066103637.1|1708102_1708654_-|2OG-Fe(II)-oxygenase
MITVHSIPQAFSEVDCSRLIEISRNAEASDARLVGQQRAHNMRRADLVWLDDVEDTGWVMDRIIELVRDANRSAYDFALDAFDESAQVARYGAEREGHFDWHSDIGEGRLAARRKLTMVVQLSDEGAYEGGALELMPSNHVVAAKKERGTATLFPSYMLHRVTPVTGGERHSLTIWAHGPAFR
>NZ_CP014595.1|WP_157374024.1|1707130_1708075_+|MBL-fold-metallo-hydrolase
MTNMEKNKMTRRSALTAAAALPLAAGLTGAGARPAAAQSAQGPQVPRTYRVPLGDFEVTAMMAGTRTVPEPKGTFGLNASDEEFAEVSKAAHIPTDKAQFFFTPTLVNTGSAVILFDTGLDPAGITAAVEAAGYAPEDVTHVVITHMHGDHIGGLSDGGTPTFGNAALLTGQEEWNHWTEAANDTFESKVRPLEDQFSFLGNGEEVAPGITSVLAPGHTPGHMCFMLESGGQKLMLTADLANHYVWSVGKPDWEVRFDMDKELAASSRRKIFGTLAEDKTPFIGYHMPFPAVGYVEAEGDGFRYVPHSYQLLMT
>NZ_CP014595.1|WP_066106880.1|1706739_1706949_-|hypothetical-protein
MIPDASNPCWRRVLSSEAELSGAVLATKILVTRLRREVKASPAQMSGKIAELRGYFEKNAFATKDIALF
>NZ_CP014595.1|WP_066103633.1|1705732_1706728_-|hypothetical-protein
MKNQMMTPEQAAARIDAGATLVIAGDEEVLTKLPRGRWIGGTTVYFMTETGGHVDRENVFVTELEAAEDARAVLYEGEDLPSLTMGRFDNGLSVILIPAFSKAHEAYAIHGAEYPGLFDQPVMGWITGVHLDELASATPKVIDGTTGRVHQEGALVLHVKLSASRSANVEILNLFTQDDNGPEITFPATGFAAETARINGAEVDFAKWVEAQGIDTRLPLVANYAGALVNVSFQSVGPEGVAFYAPVIEGVSYRLAASPGDYTTVFARQAQGDGAQELSCNCILNFLFGELQDKRTGSFTGPVTFGEIAYILLNQTMVRLQLHGQDQAAVA
>NZ_CP014595.1|WP_066103632.1|1704706_1705654_+|1-phosphofructokinase-family-hexose-kinase
MRDILTVTLNPALDLSTTADRVEAGPKLRCDAPAIDPGGGGINVARLAAELGGPARAFVALSGPTGMRLEAALAELGLPMVRMKAPGETRESFAVHDRQTGAQYRFVMPGPVWSAGDVMDALDAISSTVPQGGIVVLSGSQPPGVPDDFPTELCRALKGRGAYVIVDTSGPVLEALARGTDPAPAVLRMDSLEAEELAGRPLMTRADSAGFAAELVARGAAERVILARGADGSVMAGPDGLWQVSAAKVSVLSAVGAGDSFVGAYAFGISSGLSAPEALALGAAAASATVTTPGTSLSTRAMIHDLLDQCGASAL
>NZ_CP014595.1|WP_066103630.1|1703271_1704606_-|glutamate--tRNA-ligase
MTTTRFAPSPTGHIHVGNLRTALFNYLIARKAGGTFILRIDDTDAERSKEEYVDGIKRDLEWLGLHWDKTERQSARLDRYHAAADELREMGRFYEAFETPTELDLKRKKLLNMGKPPVYDRAALDLSESEKDALRAERGNGVWRFKLIQERIDWNDGILGDISIDAASVSDPVLIRGDGQILYTLASVVDDMDMGVTNIVRGSDHVTNTATQIQIIEALGGTAPGFAHHSLLTGPQGESLSKRLGVLSIRDLREAGVEPEALLSLMARLGSSQPVELRTSLDEIAEGFELSQFGSAPTKFDEHDLYPLTARKLHQLPLQDVAEELTAIGVPAEKQELFWSVARDNITTRKDIPGWWALFRDGAEPLIADEDRDFIAEAMALLPEGPYTRDTWGEWTKTVKEATGRKGKGLFMPLRKALTGLERGPEMADVLPLLEKIPAKDLAK
>NZ_CP014595.1|WP_066103628.1|1701800_1703030_+|DUF2254-domain-containing-protein
MTPRWLLLLYRLSKRLGVRVLFGALLALVAVALAPVLQPLIPEDWQDRFGADAVTPILQILATTMLTVTTFSLSVMVQAFQSAASQATPRAYRLHLEDSTAQTALAAFTGTFLFSLTSLVLFNAGFYSEASAVVIFFLTIGSIVTVIVAMLRWIGHLSVMGSMDHTLQRVENSALPPLERAMSRPSLGAARPDHALPSDAREVPATKAGYVQYINLEALEEKLSEREAIFRVTAHPGAHLVPGMPLGQISGGHVEAEEICECFTLGEERTMEQDARYGVMVMNEIALRALSPAVNDPGTAIDVVQRLERMLFGLGRPEEGPPEFPHVQMAPLNPAHLVEDGFYPLIRDGAARPEVIGCVLTAMNVLRRADWPALAAAAEDTRAYAFAHAEAAFTIDADKAWLAGKREDA
>NZ_CP014595.1|WP_066103626.1|1701237_1701804_+|gamma-glutamylcyclotransferase
MSTSFFFGYGSLVNRRTHAFDPAHKAVAKGWRRVWARVPGRPVSLLTVSRDAGSEIEGLIAPVTGEGWAVLDQREADYDRTDARADVRHEAPTVEELAIYVVPEADRLPPDTEHPVLLSYLDVVLQGYLGEFGKEGAERFLASTGDWRVPFLNDRDAPLYPRAQSLSDAERGFVDAALLYVGAQVFSR
>NZ_CP014595.1|WP_066103641.1|1712718_1712934_+|DUF2945-domain-containing-protein
MSSFQVGEIVKWNWGAGSATGKIAERFERKVTRQISGEKITRNGSPDAPAFLIEQDDGGRVLKLESELEKT
>NZ_CP014595.1|WP_066103643.1|1713049_1714579_-|deoxyribodipyrimidine-photolyase
MVSRLVLVLGDQLSEDLIALRRADTATDVVVMAEVAAETDYTAHHPKKIALIFAAMRKFAAHLRKEGWEVRYTQLDDTENAGSIPGELLRRAEETGSTEVLATKPGEWRLIEALRDTPLDITLLEDDRFLASHAEFEDWAKGRKALRMEYFYREMRRKTGLLMDGDKPEGGDWNYDSENRKPPPDGIDHGGPMSFTPDETVEEVLDLVEARFPKNFGTLRPFHFATDRGQAKRALAHFIRHALPEFGAYQDAMLDGHKYLNHALVSPYINIGLLSALEVCEAAAEAYRAGDAPLNSVEGFIRQIIGWREYVRGIYFHEGPDYPRRNRLNQQRALPPLYWGAETKMRCLSKAVEQTRDEAYAHHIQRLMVTGNFALIAGIDPAEVHEWYLSVYVDAFEWVEAPNTVGMSQFADGGVIASKPYVSSGAYIDRMSDYCGHCAYKVKQKTGEGACPFNLLYWHFLTRHRERFENNPRMGNMYRTWDRMDEAKRETVLAEAEAFLKRLSAGETV
>NZ_CP014595.1|WP_066103645.1|1714572_1715250_-|SDR-family-oxidoreductase
MTGTQERAIVIGSSGGIGSALAAALETRGTEVTRLSRREHRLDVTDEASVERHLGALEGSFDLILVATGALCPEGAAPEKTLKSLDPAQVMQQMAINALGPALVLKHAMRLLPRDRRAVFAALSARVGSIGDNRLGGWYSYRASKAALNQMIRTASVELARTHKQLACVALHPGTVATPFTAEYLGRHPAVPPEEAAQNLLSVLDGLGPEETGRFFDWAGKEVVW
>NZ_CP014595.1|WP_066106888.1|1715290_1716115_-|GNAT-family-N-acetyltransferase
MLRTMTKADLGHALDWAAKEGWNPGLEDLDPFYAADPEGFFCAELGGNMAAAISVVNHTDRLAFLGLYLCAPAYRGQGIAHALWLHAMKHAGTRTIGLDGVPAQQENYRKSGFVLAGQTKRFAGRLSHGPGKGVQSAAADEHAALIAMEAKACGYAKPRFTAAWLEPAQTRFTLVHREAGKPNGFLTLRGCHVGWKIGPLCAPDLPVAQALLEAAAAHTGEDQVMIDLPAESAALAAHCLAMGMQPVFHTARMYRGPAPLAGRGQNAVGTLELG
>NZ_CP014595.1|WP_083191191.1|1716114_1716828_-|GntR-family-transcriptional-regulator
MTAKEAAPAGRGKGSKGSKARAVADALTLAVHEHRLAPGLKLNEDEVGEIFGVGRTIVRSALQMLAHDQLVTIEPNRGAFVAAPSIREAREVFEARALLEPRTARSAAERMTPEDAARLRRHNAEEHAALDRGEYGTAVRLSGEFHIEIARIADQSTIADFITQLIARSSLVIALYWRRPKAMCETHAHEALLTALEEGDGATAEELMKGHLLDLLSSLDLREAPATPQSLREALRP
>NZ_CP014595.1|WP_066103646.1|1717091_1718075_+|ABC-transporter-ATP-binding-protein
MRQGLDLELVGLTKRYGDTVAVDAINHHFGSGVYACLLGPSGCGKSSTLRMIAGHETVSDGAIVLGGSDISHLPPAKRGTAMMFQSYALFPHLSVADNVAFSLKMKGTDAATRRKKAMEMLALVDMTQFAERLPSQLSGGQQQRVALARALITEPQILLLDEPLSALDPFLRIRMRAELKRLQRELGITFVHVTHGQDEALALADEIVVMNNAVIEQAGPAREVFNSPKTEFVARFMGGHNVLALPQGHFAIRNDLTRIAPQQGAKLDGRVTSVEFQGAHVAVTVLAAGDQDVTAWVPEEQFFSDPKSPGDGVGLVWDDQALHPLSA
>NZ_CP014595.1|WP_066103648.1|1718141_1719407_+|extracellular-solute-binding-protein
MTTKKLSRRGLLKGAAAAGAATAFPAPMIWAQNIKDVTLRQFGTGVSNLNEVAQKVKEDLGFTLEMTALDSDAVTQRAATQPGSFDIADIEYWICKKVWPTGNLQAMDVSKIKNYDKIVGIFKDGKLTPESTIAQGTAPHTVGFTDGPDGTTFADQQTNWMTLIPTIYNADTLGIRPDLIGRPIDTWAELLNPEFKGKASILDISSIGIMDAAMVCEAMGEIAYGDKGNMTREEIDKTMAIFTEAKRAGQFRAFWKTFDESVNLMASGEVVIQSMWSPAITAVKSRGIDCVYQPLKEGYRSWGGGIGLSKNLSGLELDAAYEYINWYLDGWVGGFLMRQGYYSAVPETSKNFMSENEWGYWFEGKEATDTITNPFGDAMAQAGEVRDGGSFEERMGSVACWNAVMDENQYMVRKWNEFIAA
>NZ_CP014595.1|WP_066103650.1|1719523_1720387_+|ABC-transporter-permease
MRAGENNRHLTGWLLASPLTLVLIFFLVLPIAMIVVVSFWKATEFSIIPAFSWENYDFLFGSPVTYRVFGNTIKYALIVWACTLLIGFTVAYFLAFHVRTQTWQIALFLLCTIPFWTSNIIRMISWIPFLGRNGLANSALISAGITDEPLEWLLYSDFSVILAFVHLYTLFMVVPIFNTMMRIDKSLIEAAYDGGASGFQTLTNVIIPLCKPGIMIGTIFVVTLVMGDFVTVRFMSGSQSANVGRLIQNDIALLQYPSASATAVVLLITVLMVIGILLRFVDIRKEL
>NZ_CP014595.1|WP_066103652.1|1720390_1721230_+|ABC-transporter-permease
MESRPRSFYVLGAFFVLFLLFLYGPTFTIAILSFQGPQGGLTFPMRGVSLHWFFDLFEQQAVGDIWGSFRRSFALGLLVMVTTVVVSVAGGLAFRKRFAGNAVLFYLVITSLVIPSILVSLGVGLIFSQLGLPIHWASSGFGSQLTWTLPFGLLIMFAVFNRFDKSFEEAARDQGATNWQTLQHVVLPIIAPSLIGVALFGFTLSYDEFARTLLTAGSYNTLPLEIYGMTTNVTTPVIFALGTLTTAFSLVIIGVFLLTVWSMNKRRAKQGSDAGKGMV
>NZ_CP014595.1|WP_066103654.1|1721229_1721868_+|HyuE-hydantoin-racemase
MAYVIINPNSTAAMTEGMLEVARAAVPGVTLEGWTNAGGPPAIQGHEDGLKAAPSLLELVDKANAEGFEGIIIACFDDTALEDAQARSKVPVIGIGQAAYHIAALRGWSFSVVTTLPISVPIIEGNIIGYGFEHLMGKVRASDVPVLALEEDPDRATEAVAVETARAMAGDGVDCVILGCAGMAKLTAHLRGRFDKPILDGVECAARLITAL

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Crispr_ID: NZ_CP014595_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP014595_4

2409244-2409599

Orphan

Consensus_repeat	Method
GGTGCGGCGATCTCAGGGAGGAGGAGAGAGACCGCCGCTGTATCG	PILER-CR

3 spacers

The CRISPR arrays of NZ_CP014595_4

>merge|NZ_CP014595|4|2409244-2409599|PILER-CR
GGTGCGACGATCTCAGGGAGGAGGAGAGAGATCGCCGCTGCATCAAAGTCCCAGGAAGGAGGAGAGGGACTCCGAAGCTTCTGGACCGCATGCGGCCCTTTATGAGGTGCGGCGGTCTCAGGGAGGAGGAGAGAGACCGCCGCTGTATCGTTGCCCCAGGGAGGAGGAGAGGGGCTCCGAATAGGGTGGGCGCTGAGGCCCGGAAACTGGTGCGGCGGTCTCAGGGAGGAGGAGAGAGACCGCCGCGGTATCGTTGCCCCAGGGAGGAGGAGAGGGGCTCCGAATAGGTTGGGCGCTGGGGCCCGGAAACTGGTGCGGCGATCTCAGGGAGGAGGAGAGAGATCGCCGCTGTATCG

>NZ_CP014595|4|1|2409244-2409599|PILER-CR
GGTGCGACGATCTCAGGGAGGAGGAGAGAGATCGCCGCTGCATCA	AAGTCCCAGGAAGGAGGAGAGGGACTCCGAAGCTTCTGGACCGCATGCGGCCCTTTATGA
GGTGCGGCGGTCTCAGGGAGGAGGAGAGAGACCGCCGCTGTATCG	TTGCCCCAGGGAGGAGGAGAGGGGCTCCGAATAGGGTGGGCGCTGAGGCCCGGAAACT
GGTGCGGCGGTCTCAGGGAGGAGGAGAGAGACCGCCGCGGTATCG	TTGCCCCAGGGAGGAGGAGAGGGGCTCCGAATAGGTTGGGCGCTGGGGCCCGGAAACT
GGTGCGGCGATCTCAGGGAGGAGGAGAGAGATCGCCGCTGTATCG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP014595.1\|WP_066107027.1\|2414421_2415360_-\|SPOR-domain-containing-protein	unknown	unknown	gnl\|CDD\|335993
NZ_CP014595.1\|WP_066105285.1\|2411400_2412522_-\|DNA-polymerase-III-subunit-delta'	unknown	unknown	gnl\|CDD\|236022
NZ_CP014595.1\|WP_066105281.1\|2410210_2411275_+\|Mrp/NBP35-family-ATP-binding-protein	unknown	unknown	gnl\|CDD\|378455
NZ_CP014595.1\|WP_066105264.1\|2398374_2400075_+\|cell-division-protein-FtsZ	unknown	unknown	gnl\|CDD\|236468
NZ_CP014595.1\|WP_066105298.1\|2416001_2417189_+\|site-specific-integrase	unknown	unknown	gnl\|CDD\|271182
NZ_CP014595.1\|WP_157374068.1\|2418145_2418556_+\|AlpA-family-phage-regulatory-protein	unknown	unknown	gnl\|CDD\|225848
NZ_CP014595.1\|WP_066107023.1\|2395732_2396626_+\|cell-division-protein-FtsQ	unknown	unknown	gnl\|CDD\|224505
NZ_CP014595.1\|WP_066105295.1\|2413174_2414374_-\|D-alanyl-D-alanine-carboxypeptidase	unknown	unknown	gnl\|CDD\|224600
NZ_CP014595.1\|WP_066105305.1\|2417929_2418136_+\|MerR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|378935
NZ_CP014595.1\|WP_066105269.1\|2402287_2403940_+\|DNA-repair-protein-RecN	unknown	unknown	gnl\|CDD\|223571
NZ_CP014595.1\|WP_066105267.1\|2401376_2402231_+\|outer-membrane-protein-assembly-factor-BamD	unknown	unknown	gnl\|CDD\|274513
NZ_CP014595.1\|WP_066105261.1\|2396625_2397957_+\|cell-division-protein-FtsA	unknown	unknown	gnl\|CDD\|223918
NZ_CP014595.1\|WP_066105272.1\|2404161_2407242_-\|valine--tRNA-ligase	unknown	unknown	gnl\|CDD\|235582
NZ_CP014595.1\|WP_066105289.1\|2412518_2413178_-\|dTMP-kinase	unknown	unknown	gnl\|CDD\|234814
NZ_CP014595.1\|WP_066107024.1\|2400342_2401263_+\|UDP-3-O-acyl-N-acetylglucosamine-deacetylase	unknown	unknown	gnl\|CDD\|237294
NZ_CP014595.1\|WP_066105302.1\|2417188_2417887_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP014595.1\|WP_066105258.1\|2394824_2395715_+\|D-alanine--D-alanine-ligase	unknown	unknown	gnl\|CDD\|234948
NZ_CP014595.1\|WP_066105278.1\|2409758_2409962_-\|DUF1127-domain-containing-protein	unknown	unknown	gnl\|CDD\|368980
NZ_CP014595.1\|WP_066105275.1\|2407389_2408955_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|366246
NZ_CP014595.1\|WP_066105255.1\|2393638_2394577_+\|UDP-N-acetylmuramate-dehydrogenase	unknown	unknown	gnl\|CDD\|237553

Protein	Function_ID	Function_description	E-value
NZ_CP014595.1\|WP_066107027.1\|2414421_2415360_-\|SPOR-domain-containing-protein	gnl\|CDD\|335993	pfam05036, SPOR, Sporulation related domain. This 70 residue domain is composed of two 35 residue repeats found in proteins involved in sporulation and cell division such as FtsN, DedD, and CwlM. This domain is involved in binding peptidoglycan. Two tandem repeats fold into a pseudo-2-fold symmetric single-domain structure containing numerous contacts between the repeats. FtsN is an essential cell division protein with a simple bitopic topology, a short N-terminal cytoplasmic segment fused to a large carboxy periplasmic domain through a single transmembrane domain. These repeats lay at the periplasmic C-terminus. FtsN localizes to the septum ring complex.	4.14794e-09
NZ_CP014595.1\|WP_066105285.1\|2411400_2412522_-\|DNA-polymerase-III-subunit-delta'	gnl\|CDD\|236022	PRK07471, PRK07471, DNA polymerase III subunit delta'; Validated.	4.76329e-156
NZ_CP014595.1\|WP_066105281.1\|2410210_2411275_+\|Mrp/NBP35-family-ATP-binding-protein	gnl\|CDD\|378455	pfam10609, ParA, NUBPL iron-transfer P-loop NTPase. This family contains ATPases involved in plasmid partitioning. It also contains the cytosolic Fe-S cluster assembling factor NBP35 which is required for biogenesis and export of both ribosomal subunits.	1.27388e-132
NZ_CP014595.1\|WP_066105264.1\|2398374_2400075_+\|cell-division-protein-FtsZ	gnl\|CDD\|236468	PRK09330, PRK09330, cell division protein FtsZ; Validated.	0
NZ_CP014595.1\|WP_066105298.1\|2416001_2417189_+\|site-specific-integrase	gnl\|CDD\|271182	cd00801, INT_P4_C, Bacteriophage P4 integrase, C-terminal catalytic domain. P4-like integrases are found in temperate bacteriophages, integrative plasmids, pathogenicity and symbiosis islands, and other mobile genetic elements. The P4 integrase mediates integrative and excisive site-specific recombination between two sites, called attachment sites, located on the phage genome and the bacterial chromosome. The phage attachment site is often found adjacent to the integrase gene, while the host attachment sites are typically situated near tRNA genes. This family belongs to the superfamily of DNA breaking-rejoining enzymes, which share the same fold in their catalytic domain and the overall reaction mechanism. The catalytic domain contains six conserved active site residues. Their overall reaction mechanism involves cleavage of a single strand of a DNA duplex by nucleophilic attack of a conserved tyrosine to give a 3' phosphotyrosyl protein-DNA adduct. In the second rejoining step, a terminal 5' hydroxyl attacks the covalent adduct to release the enzyme and generate duplex DNA.	1.05019e-50
NZ_CP014595.1\|WP_157374068.1\|2418145_2418556_+\|AlpA-family-phage-regulatory-protein	gnl\|CDD\|225848	COG3311, AlpA, Predicted transcriptional regulator [Transcription].	5.22365e-09
NZ_CP014595.1\|WP_066107023.1\|2395732_2396626_+\|cell-division-protein-FtsQ	gnl\|CDD\|224505	COG1589, FtsQ, Cell division septal protein [Cell envelope biogenesis, outer membrane].	2.9004e-19
NZ_CP014595.1\|WP_066105295.1\|2413174_2414374_-\|D-alanyl-D-alanine-carboxypeptidase	gnl\|CDD\|224600	COG1686, DacC, D-alanyl-D-alanine carboxypeptidase [Cell envelope biogenesis, outer membrane].	4.18931e-129
NZ_CP014595.1\|WP_066105305.1\|2417929_2418136_+\|MerR-family-transcriptional-regulator	gnl\|CDD\|378935	pfam12728, HTH_17, Helix-turn-helix domain. This domain is a DNA-binding helix-turn-helix domain.	0.00827695
NZ_CP014595.1\|WP_066105269.1\|2402287_2403940_+\|DNA-repair-protein-RecN	gnl\|CDD\|223571	COG0497, RecN, ATPase involved in DNA repair [DNA replication, recombination, and repair].	1.1609e-180
NZ_CP014595.1\|WP_066105267.1\|2401376_2402231_+\|outer-membrane-protein-assembly-factor-BamD	gnl\|CDD\|274513	TIGR03302, OM_YfiO, outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). [Protein fate, Protein and peptide secretion and trafficking].	1.8117e-88
NZ_CP014595.1\|WP_066105261.1\|2396625_2397957_+\|cell-division-protein-FtsA	gnl\|CDD\|223918	COG0849, ftsA, Cell division ATPase FtsA [Cell division and chromosome partitioning].	4.75227e-116
NZ_CP014595.1\|WP_066105272.1\|2404161_2407242_-\|valine--tRNA-ligase	gnl\|CDD\|235582	PRK05729, valS, valyl-tRNA synthetase; Reviewed.	0
NZ_CP014595.1\|WP_066105289.1\|2412518_2413178_-\|dTMP-kinase	gnl\|CDD\|234814	PRK00698, tmk, thymidylate kinase; Validated.	4.09466e-79
NZ_CP014595.1\|WP_066107024.1\|2400342_2401263_+\|UDP-3-O-acyl-N-acetylglucosamine-deacetylase	gnl\|CDD\|237294	PRK13186, lpxC, UDP-3-O-acyl-N-acetylglucosamine deacetylase.	6.47727e-152
NZ_CP014595.1\|WP_066105258.1\|2394824_2395715_+\|D-alanine--D-alanine-ligase	gnl\|CDD\|234948	PRK01372, ddl, D-alanine--D-alanine ligase; Reviewed.	1.65546e-171
NZ_CP014595.1\|WP_066105278.1\|2409758_2409962_-\|DUF1127-domain-containing-protein	gnl\|CDD\|368980	pfam06568, DUF1127, Domain of unknown function (DUF1127). This family is found in several hypothetical bacterial proteins. In some cases it represents it represents the C-terminal region whereas in others it represents the whole sequence.	2.29344e-05
NZ_CP014595.1\|WP_066105275.1\|2407389_2408955_-\|hypothetical-protein	gnl\|CDD\|366246	pfam00685, Sulfotransfer_1, Sulfotransferase domain.	3.63692e-07
NZ_CP014595.1\|WP_066105255.1\|2393638_2394577_+\|UDP-N-acetylmuramate-dehydrogenase	gnl\|CDD\|237553	PRK13905, murB, UDP-N-acetylmuramate dehydrogenase.	7.72212e-151

>NZ_CP014595.1|WP_066105275.1|2407389_2408955_-|hypothetical-protein
MDRHIVIAGQGRSGSTLFYNMLRNTLQGYGMFDREVPAASVIQLPGNQCTKRPFDIFDLPKLFQANQGRKRIDLICMLRDPRDILTSRHRSVPDDYFVAADNCWFVPEGRVPAFTAPGFLPVHEASMRVSGSGLFPQGIFFLKYEDLVRDPEAVQQMLAEGLGLTFEGRFSDFHKAEIPQRLQRALNGVREVDTERQRKWAKPEHRARIIDQFTRFPVLHDVLKQLGYEEDQGWFEDLQREAQQEGVAVKAAVPAAKPAAAEAAAETKQSALPVTGSILDHPAIPVLYEDATMKLSGIEGSGPQCLVTFVGVGHGLGGIDQQSEEFRKLSSGGWGSQLFVFDKTRSWGNALDPELLARLTAPHRAGRKVSTLGLSMGGFLAAQMSRPLGAARCIALAPQYSVHPEIAPFDTRWTRYSEQISTWRQPSLMGSFDSACRYELIFPDLPVELAHAERFPKAPNIRRFTVPSDNHNVAATLKARGQLYPLLEALLREDGAGALPDFCTPGAAAWHVAPEVAAAAG
>NZ_CP014595.1|WP_066105272.1|2404161_2407242_-|valine--tRNA-ligase
MAMEKTFNAAEAEARIYDAWESSGAFKAGANASRDESFSIMIPPPNVTGSLHMGHAFNNTLQDILVRWHRMRGFDTLWQPGQDHAGIATQMVVERELAKDKNNATRREMGREAFLEKVWQWKQQSGGTIINQLKRLGASCDWSRNAFTMSGAEGAPAGEDGNFHDAVIKVFVDMYEKGLIYRGKRLVNWDPHFETAISDLEVENIEVPGHMWHFKYPLAGGETYTYVEKDEDGNVLFTEERDYISIATTRPETMLGDGAVAVHPSDERYAPIVGKLCEIPVGPKEHRRLIPIITDEYPDASFGSGAVKITGAHDFNDYGVAKRGGIPCYRLMDTRATMREDGHPYAEAAEIAQQVARGELTLDEHEVDKLNLVPDHLRGLDRFAAREAVIAEITEEGLAVMTEATDPRLGAAAAKAPPAPEEGGEALDEPEQWVPLVEAKPIMQPFGDRSKVVIEPMLTDQWFVDTAQIVGPALDAVREGRVRIMPESGEKTYYHWLENIEPWCISRQLWWGHQIPVWHTPGMGDEWRSFCAASEDEAIEQMKAVFGEDAEFLIVEDAAAAEDHLAALLQQGTDFTGVDQRRRPQAIPVFRDPDVLDTWFSSGLWPIGTLGWPEQTPELGKYFPTSVLVTGQDILFFWVARMMMMQLAVVDEIPFHDVYLHGLVRDAKGKKMSKSLGNVVDPLEIIDEFGADALRFTNAAMASLGGVLKLDKQRIAGYRNFGTKLWNAASFAQMNGVFDLAHSDAIPDTTLPLNRWIKGEIAKTRETVDAALADYRFNDAAQALYGFVWGTFCDWYLEFTKPVFQGEDEAAKAETRATYAWAFDQCLILLHPIMPFITEELWAQRDRPKMLIHADWPAYSAAEMVDAQADAELNWVIRMIEAIRSARAQMHVPAGLYVPCVVKGMTPDAKAAYETNEAFVKRYARIEGLTEVDEMPKGTAALALSGGTFGLPLAGIIDVAEEKARLEKALQKLGKELGGLRGRLKNPKFAESAPEEVVQETRDNLAAREEEEAKLKEAMARLAELG
>NZ_CP014595.1|WP_066105269.1|2402287_2403940_+|DNA-repair-protein-RecN
MLRALEIRDLLIIDRLDLSFQPGLNVLTGETGAGKSILLDSLGFVLGWRGRAELVRAGAQQGEVTAVFELAEGHAARGVLEEAGLPVSGELILRRVNTADGRKTGWVNDRRASGEVLRRLSETLVELHGQHDDRGLLNPSGHRDILDSYAGIGAELGAARAAWIAQRTARKALSDAETALEAVRAEEDFLRHATEELDKLAPEVGEEAELDSRRRMMQGAERVRADISRASQALGYEGAEGAMSDALRWLEGASEGAEGRLDGAIAALTRAMAELDEASGEVASTLDALEFDPRTLEDTEERLFAIRGLARKHQVLPDELAGLRETLSARLSALDHSAEELDALNAEVRRTENAYDAAATALSEARSAAAARLDKAVATELAPLKMERAVFRTEVTRAPEGPEGRDAVAFTVATNPGAPSGPLNKIASGGELSRFLLALKVCLSQEQGGDVTMIFDEIDRGVGGATADAVGRRLASLAAEGQVLVVTHSPQVAALGAHHWRVAKRVENDITLSSVTALAADEREDEIARMLSGDTVTPEARAAARALLIG
>NZ_CP014595.1|WP_066105267.1|2401376_2402231_+|outer-membrane-protein-assembly-factor-BamD
MAGGRSRNAVIGAAFSAILLVGCSAQEQPGMGPGGVPMENFTAEQIFERGEYEMDRSDAERAAYYFGEIERLYPYSDWAKRALIMQAYAYHRAKDYENSRSSAQRYIDFYPSDEDAAYAQYLLALSYYDQIEEVGRDQGLTFQALQSLRTVIERYPDTEYARSSILKFDLAFDHLAAKEMEIGRYYLKRENYGAAISRFRVVVEDFQTTTHTAEALHRLVEAYLSLGLTQEAQSAGAILGYNYRGTPWYEDSYKLLTGRGLELEAAGDSWLAQVYRQMVKGQWL
>NZ_CP014595.1|WP_066107024.1|2400342_2401263_+|UDP-3-O-acyl-N-acetylglucosamine-deacetylase
MQTTIRSAVSFQGVGLHSGAPVRMTIRPASAEHGIWFKRTDILLGDALVPARYDAVEISPLCTLIKNRAGVSVSTIEHVMAALAGCGIHNALIEIDGPEVPILDGSAAPFVREILARGVRELRAPVRAIEILTPVEVQTAAGWARLSPAQGTTMEFHIDFADAAIGTQDKVINLANGSFVRELCDSRTFCRQSDVEAMQANGKALGGTYENAVVVDGDKILSPGGLRHADEAVRHKMLDALGDLYTAGVPILGHYTGFKAGHAITNKLLHALFATPDAFRMTVCDSRMAARLPGAGVERDEIPAVA
>NZ_CP014595.1|WP_066105264.1|2398374_2400075_+|cell-division-protein-FtsZ
MALNLSMPGQEELKPRITVFGVGGAGGNAVNNMITKQLEGVDFVVANTDAQALQQSMATAKVQLGVKVTEGLGAGARPSVGSAAAEESIEQIVDHLAGAHMCFITAGMGGGTGTGAAPIIAQAARELGVLTVGVVTKPFQFEGAKRMRQAEEGVETLQKMVDTLIIIPNQNLFRLANEKTTFTEAFSLADDVLYQGVKGVTDLMVRPGLINLDFADVRAVMDEMGKAMMGTGEADGEDRSIQAAEKAIANPLLDEISLKGAKGVLINITGGHDLTLFELDEAANRIREEVDADANIIVGSTLDDTMEGRMRVSVVATGIDASAVQHDIPVPRRTLAQPLANTEEQAPAAEAAPASVQPAAQQPAAMVAQAAPTDPQAQQYEEDEPSLFGEMPAAQQTYQEEDVVETDDGLPPPAYRPQAAQPQPQPSTLEAAPESFVAPRAPQPGQPSADTMKRLHAAAARNNRPGQPAAPARPQQPQQAPQRAAEPERPRFGINSLINRMTGHGHEQQPQQGAPKAAAPAAPQPQPQARRQPPMQAQRPAPAPAPEEAPEQDRIEIPAFLRRQAN
>NZ_CP014595.1|WP_066105261.1|2396625_2397957_+|cell-division-protein-FtsA
MFELYESQRAMRNMRKAAMQRGVVAVLDVGSSKIACLVLRFDGSDQGEDSGVGSLAGQAGFRVIGAATTRSRGVRFGEIAAMNETERAIRTAVQAAQKMAGIRVDHVIACFSGAEPRSYGLDGHVSVDGNTVTEQDVARVLSACDVPEVGHGREVMHAQPVNFALDHRSGLSDPRGQIGRELTCDMHMLTVNAQAIQNLAHCVKRCDLELAGIASSAYVSGVAALVEDEQELGAACIDMGGGATGVSIFMKKHMIYGDAVPMGGDHVTGDISMGLQIPMAMAERIKTFYGGVHATGMDDREMIEISGDTGDWHHDRRQVSRAELIGIMRPRVEEILEEVRACLDAAGFEHLPSQQIVLTGAASQIPGLDGLASRILGSQVRLGRPMRVHGLPQAATGPGFASAVGMCLFAAHPQDEWWDFEIPVERYPARSLMRAVKWFRENW
>NZ_CP014595.1|WP_066107023.1|2395732_2396626_+|cell-division-protein-FtsQ
MPRPQKSRPQQVHRSDPAPSRLKYRLERLMLTPLFRFTLHIGMPFLIGVGGAAAYFSVDSNREAFVGAIMSVRDQIEARPEFRVNLMAIDGASDGVAADVREILSLDFPLSSFDLDLDQMREIITGLDAVKSASLRITQGGVLEVNVVERVPVVLWRGLRGLELLDEGGALVGPAGRRASHADLPVIAGTGAEAHVPEALDLFAAAAPLAGRLRGLERVGLRRWDLVLDKGQRVLLPEEGAVQALERAMAMDGAVDMLSRDIAAVDLRLAQRPTLRLNHSAAEEYWRIKSIETGEKR
>NZ_CP014595.1|WP_066105258.1|2394824_2395715_+|D-alanine--D-alanine-ligase
MAVLMGGPSAEREVSLSSGQECAAALRDEGFDVIEIDAGPDLAARLKDLSPDVVFNALHGRWGEDGCVQGMLEWLRIPYTHSGVLSSALAMDKDRSKQVYRAAGLPVVESVLADKAEVCARHVMAPPYVVKPYNEGSSVGVYLVMDGANTPPQLSEEMPQTVMVETYAPGRELTTTVLGDQALTVTDIITDGWYDYDAKYKAGGSRHEVPANVPQEIFDACLDYAVRAHKALGCRGLSRTDFRWDESRGLDGLVLLETNTQPGMTPTSLAPEQAQASGMSFGALCRWMVEDASCDR
>NZ_CP014595.1|WP_066105255.1|2393638_2394577_+|UDP-N-acetylmuramate-dehydrogenase
MIDQLPPVRGRLTTGRPLSELTWLRVGGPAEVLFQPADLEDLQQFLAALPADVPVFPMGVGSNLIVRDGGLRGVVIRLGRGFNGTEIEGTRVTSGAAALDAQVAKRAAAAGVDLTFLRTIPGSIGGAVRMNAGCYGTYVADHLVEIKAVLRDGTLVTIPAADLRLEYRQSQLPEGAVVVEAVFEGVAGEPDELMARMEAQVKKRDETQPTKDRTAGSTFRNPAGFSSTGKADDTHDLKAWKVIDEAGMRGATRGGAQMSPMHSNFLVNTGEASAADLEGLGEEVRKRVFQHSGLQLQWEIMRVGDPLENEGG
>NZ_CP014595.1|WP_066105278.1|2409758_2409962_-|DUF1127-domain-containing-protein
MAFATDTTRIEGRTGGLLDTLRTALARRRLYKQTFSELASLSNRELSDLGLHRSMIRRIAYQAAYEA
>NZ_CP014595.1|WP_066105281.1|2410210_2411275_+|Mrp/NBP35-family-ATP-binding-protein
MTQLSDATMALLKSFDLPGGGNLVSRDMIRALSVDGGHVRFVIEAPSAEIARQMEGFRAVVEAQVAQLPGAVSAAVVLSAPTQAPKAPSLKMGGHAKPQEGRMAPPGVKKLIAIGSGKGGVGKSTVSSNLAVALARAGKKVGLLDADIHGPSQPRMFGVSKRPASPDGKTIIPLEAHGVTLMSIGVMLPEDKAVVWRGPMLMGALQQMLMQVEWGTLDVLLIDLPPGTGDVQLSLGQKSEVDGAIVVSTPQDVALIDAKKALEAFATLNVPVLGMIENMSVFVCPDCGRESHIFGQGGVAAEAARLNLPVLAQLPIDLDTRLAGDSGAPVALGEGVMARAYAKLAQDLIDAGQV
>NZ_CP014595.1|WP_066105285.1|2411400_2412522_-|DNA-polymerase-III-subunit-delta'
MSAEEDIPEADRVEGAPHPRETFRLFGQDRAQADFLTAFTSGRLHHGWLITGPRGLGKATLAWTIARFLLATPEQEEDGLFGAPPPPRDLLIDPEHPVAHRVHALSEPRLHLLRRSWDSKTKKLRSIITVEEVRALKRFFSLSSADGGRRVVIIDSADEMNPNAANAILKLLEEPPANTVLLMISHQPSRLLPTIRSRCRELRLAPLGPEDMARALEQAGAQVAPQEAEALAELSAGSVGEALRLLNLDGLKLYSDLVSLAGTLPRLDRPRAIALGESTAGKGREARLDLMLTLTDRLMARLARVGVTGMPPRAEAAPNEAEVLRRLAPHPGAGRAWAQLAQDAGERARHARAVNVDPAALVLDLLLQMRKAG
>NZ_CP014595.1|WP_066105289.1|2412518_2413178_-|dTMP-kinase
MTGSNGAETARSGLFISFEGIDGSGKSTQARLLHAALLGAGREAVLTREPGGSPGAEEIRALVLQGDPDRWSAETELLLFTAARRDHLERLIRPALAAGKLVICDRFADSSRMYQGLSRGDLRSKVDALHELMIGTEPDLTFLIDMDPAAGLARAKARATEEERFEDFGVELQERMRAGYLALAKEFPERFIVIDGNRAQENVAADIRARLEPYLSTSA
>NZ_CP014595.1|WP_066105295.1|2413174_2414374_-|D-alanyl-D-alanine-carboxypeptidase
MRRPTSPLSSLSLRRLLAGAATAALLATSAQAFDTSARTAFVLDYTTGTVLMAKDADKSVPPASMSKLMTLYMAFEAIRDGRLKLDETLPVSSHAMSYGGSTMFLDTTDRVKVEDLLRGIIVLSGNDACAVIAEALSPNGTEAGFADLMTRRAQQLGMTSSHFANASGWPADGHVMSMRDLVLLARHIIEDFPEFYPIFAERRFEFDGRAPQNVHNRNPLLRLDIGADGLKTGHTQEAGYGLVGSAKQGDRRVIFAIAGLDSERARAEESESIVNWAFRQFAERKLIEKGKEVARADVFLGAQESVGLVARDDIEMLIPVTPGTELGAEVVYTGPLQAPITAGQQLAELIITPEGLPEHRVPLFAAEDVPSGGFVKRMMVVSTNLIGRLQAPATTAEAM
>NZ_CP014595.1|WP_066107027.1|2414421_2415360_-|SPOR-domain-containing-protein
MKPAKAGATSRASRGTGWASLAALLGTVALSACSDAQMPGFLKSEGGTGAEASGTSATVERDIEAPEVFQTTEAGLWDGRPSLGGVWVAHPDVTEPERVIIRNESNGQFVIGALFRRERMSPGPRLQVSSDAAAAIGMLAGEPVNLNVVALRREEGPAQPEEGTGPAGVEASTLSETPEVEETTLDPVTAGAAAAIEAAPASAPAAAPAAAPAATAAPTEAASPAPAPAPKPASSLSRPYVQIGIFSIEQNAENTATAMRQAGMVPTVKKQSSSGKTFWRVLVGPAQDKAELEALLTKIKGTGFSDAYAVKN
>NZ_CP014595.1|WP_066105298.1|2416001_2417189_+|site-specific-integrase
MALSGKLTKKLVENLGPGRHGDGNGLYLVVDPSGARRWIVRVVVKGQKNRKGGPLRTDFGLGSAELVPLHQARERALEYRRMAKQGVNPRFNARKEAPTFEEVAQQVHIERMPTWKNAKHGQQWINTLRVYAFPKIGRIPIDLIGQPEVMMCLGPIWTEKHETATRLAQRIKIVLDVARSKGFRTGENPVTAIKESLALPRVKAKPKHHVAMRWQDVPSFFAGLRERNAMAAKALMFTCLSAARTGEVLGMRWAEVDTESQLWVCPAERMKGGEEHRVPLTDEMLSIIEPLRAMRSEYVFEGQKRHRPLSNMAMLMLLRRMGAEGVTVHGFRSTFRDWAAEVANVPREVAEKSLAHTVGSDVERAYARSDLLEKRRALMRDWSQYVASSRVQEPE
>NZ_CP014595.1|WP_066105302.1|2417188_2417887_+|hypothetical-protein
MFKVSINEVDGLYLELFRIALSAEDNEARVEALRYVKHVVVAERLKVLAESEGPGWASEPDNQSLVTWSAQTAAERDDAIYEFSRVSRTYEDRNERRLNIAEHAGKLVYLSILEGKRQGVQTPTGILHQVTLAGKQHGIRGAKDKDTVRRSWGAYRGIVHLGMAMDFCADQPVQPEEVLFFAERIRRVLSGSCPKGTSEPYVPPEAQISFAYESGIWGPRFRNRGLPYSVGD
>NZ_CP014595.1|WP_066105305.1|2417929_2418136_+|MerR-family-transcriptional-regulator
MPKLFEDDRNYLLGDPELEIIGDREKLAQWRHKMKGPAFYRLGRKIIYRGSDLNAWVAANRVDPSKNA
>NZ_CP014595.1|WP_157374068.1|2418145_2418556_+|AlpA-family-phage-regulatory-protein
MSKKTREPRGALDLFSAAGLSDHALPAVGNLKCAAPAAKPARKPKKKAISPISVEGAQNERYLRDSAVAQRYGVSRQTVWRWAAQGALPEPIKLSEGVTRWRVSDLLAHEASLPKSAKAKVVRSRRMKTTREGGQS

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

2821630 : 2846391

Paracoccus_phage(25.0%)

capsid,protease,portal,head,tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_066106250.1\|2821630_2822215_-\|protease	TIGR02281 family clan AA aspartic protease	NA	NA	NA	NA
WP_066106253.1\|2822302_2822926_-	MarC family protein	NA	NA	NA	NA
WP_066107106.1\|2822975_2824850_-	ABC-F family ATP-binding cassette domain-containing protein	A0A2K9L0W2	Tupanvirus	3.0e-72	34.7
WP_066106256.1\|2825174_2825597_+	nucleoside-diphosphate kinase	NA	NA	NA	NA
WP_066106259.1\|2825699_2826101_-	DUF4112 domain-containing protein	NA	NA	NA	NA
WP_066106261.1\|2826119_2826299_-	YqaE/Pmp3 family membrane protein	NA	NA	NA	NA
WP_066106263.1\|2826419_2826767_-	TfoX/Sxy family protein	NA	NA	NA	NA
WP_066106266.1\|2826785_2827973_-	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA
WP_083191257.1\|2828508_2829918_+	DNA-packaging protein	A0A0K1LMR9	Caulobacter_phage	2.9e-72	39.9
WP_066106271.1\|2830177_2831287_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_083191290.1\|2831512_2832292_+	ABC transporter permease subunit	NA	NA	NA	NA
WP_066106277.1\|2832288_2833071_+	ABC transporter permease	NA	NA	NA	NA
WP_066106280.1\|2833067_2834114_+	ABC transporter ATP-binding protein	Q6GZ03	Mycoplasma_phage	6.6e-21	36.0
WP_066106283.1\|2834267_2835488_+\|portal	phage portal protein	W8ECU7	Geobacillus_phage	4.6e-58	35.6
WP_066106286.1\|2835441_2835708_+	hypothetical protein	NA	NA	NA	NA
WP_066107112.1\|2835735_2836290_+\|head,protease	HK97 family phage prohead protease	A0A0U2BX10	Paracoccus_phage	2.1e-34	58.0
WP_066106289.1\|2836318_2837503_+\|capsid	phage major capsid protein	B0VK33	Azospirillum_phage	2.1e-63	42.1
WP_066106292.1\|2837567_2838161_+	hypothetical protein	NA	NA	NA	NA
WP_066106295.1\|2838157_2838496_+\|head,tail	head-tail adaptor protein	NA	NA	NA	NA
WP_066106297.1\|2838492_2838900_+	DUF3168 domain-containing protein	NA	NA	NA	NA
WP_066106302.1\|2838926_2839349_+\|tail	phage major tail protein, TP901-1 family	A0A1J0GVL1	Pseudoalteromonas_phage	2.7e-05	31.4
WP_066106305.1\|2839349_2839673_+	gene transfer agent family protein	NA	NA	NA	NA
WP_066106308.1\|2839669_2839873_+\|tail	phage tail assembly chaperone	NA	NA	NA	NA
WP_066107116.1\|2839865_2840519_+\|tail	phage tail tape measure protein	H9EB42	Vibrio_phage	1.2e-09	46.8
WP_066106311.1\|2840529_2841162_+	DUF2460 domain-containing protein	A0A0B5A2K3	Paracoccus_phage	9.5e-55	49.3
WP_066106314.1\|2841161_2842043_+	DUF2163 domain-containing protein	A0A1V0DY93	Dinoroseobacter_phage	6.5e-54	40.7
WP_066106317.1\|2842039_2842480_+	peptidase	A0A1V0DYB6	Dinoroseobacter_phage	2.4e-28	50.7
WP_066106321.1\|2842479_2846391_+	host specificity protein	A0A0B5A7K5	Paracoccus_phage	2.3e-231	39.1

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

3. NZ_CP014600

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP014600_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP014600_1

37151-37310

Orphan

Consensus_repeat	Method
CTGTCCCCGCGGGGACAC	PILER-CR

2 spacers

The CRISPR arrays of NZ_CP014600_1

>merge|NZ_CP014600|1|37151-37310|PILER-CR
TGTCCCCGCGGGGACAGAGAGAAAGCCGGTCGATGCGCCAGCGCTCAGAGAGCCTTTGCCGGGGTCTGTCCCCGCGGGGACACGTGATCACCCGCCCCAGAAAGAGCCCTCTGCCACGGCCAAGGCGCGCGCCAAATCTGCGCTGTCCCCGCGGGGACAC

>NZ_CP014600|1|1|37151-37310|PILER-CR
TGTCCCCGCGGGGACAGA	GAGAAAGCCGGTCGATGCGCCAGCGCTCAGAGAGCCTTTGCCGGGGTC
TGTCCCCGCGGGGACACG	TGATCACCCGCCCCAGAAAGAGCCCTCTGCCACGGCCAAGGCGCGCGCCAAATCTGCGC
TGTCCCCGCGGGGACAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP014600.1\|WP_083191532.1\|43994_44858_+\|IclR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224332
NZ_CP014600.1\|WP_066112061.1\|44873_46778_+\|thiamine-pyrophosphate-binding-protein	unknown	unknown	gnl\|CDD\|223107
NZ_CP014600.1\|WP_066112040.1\|34683_35424_+\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|180838
NZ_CP014600.1\|WP_066112034.1\|27345_29025_-\|alpha/beta-hydrolase-fold-domain-containing-protein	unknown	unknown	gnl\|CDD\|369561
NZ_CP014600.1\|WP_066112453.1\|47725_48157_+\|heme-binding-protein	unknown	unknown	gnl\|CDD\|225734
NZ_CP014600.1\|WP_066112064.1\|46813_47704_+\|NAD(P)-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|224995
NZ_CP014600.1\|WP_083191533.1\|49026_50046_+\|TRAP-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270321
NZ_CP014600.1\|WP_066112055.1\|41673_43782_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379232
NZ_CP014600.1\|WP_066112067.1\|48161_48989_+\|sugar-phosphate-isomerase/epimerase	unknown	unknown	gnl\|CDD\|224007
NZ_CP014600.1\|WP_066112451.1\|32846_33299_+\|GtrA-family-protein	unknown	unknown	gnl\|CDD\|377229
NZ_CP014600.1\|WP_066112049.1\|38694_39999_-\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|274585
NZ_CP014600.1\|WP_066112043.1\|35483_36797_+\|DUF2029-domain-containing-protein	unknown	unknown	gnl\|CDD\|378217
NZ_CP014600.1\|WP_066112052.1\|40809_41493_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|273037
NZ_CP014600.1\|WP_066112036.1\|29488_31006_-\|peptide-MFS-transporter	unknown	unknown	gnl\|CDD\|225646
NZ_CP014600.1\|WP_066112031.1\|25998_27306_+\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|236983
NZ_CP014600.1\|WP_066112045.1\|37588_38698_-\|replication-protein	unknown	unknown	gnl\|CDD\|319262
NZ_CP014600.1\|WP_083191530.1\|22826_24737_-\|ATP-dependent-metallopeptidase-FtsH/Yme1/Tma-family-protein	unknown	unknown	gnl\|CDD\|273520
NZ_CP014600.1\|WP_083191531.1\|31239_32841_+\|UbiA-family-prenyltransferase	unknown	unknown	gnl\|CDD\|236195
NZ_CP014600.1\|WP_157374396.1\|25117_25996_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|366565
NZ_CP014600.1\|WP_066112038.1\|33295_34687_+\|FAD-binding-oxidoreductase	unknown	unknown	gnl\|CDD\|223354

Protein	Function_ID	Function_description	E-value
NZ_CP014600.1\|WP_083191532.1\|43994_44858_+\|IclR-family-transcriptional-regulator	gnl\|CDD\|224332	COG1414, IclR, Transcriptional regulator [Transcription].	1.5033e-61
NZ_CP014600.1\|WP_066112061.1\|44873_46778_+\|thiamine-pyrophosphate-binding-protein	gnl\|CDD\|223107	COG0028, IlvB, Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism].	9.23173e-51
NZ_CP014600.1\|WP_066112040.1\|34683_35424_+\|SDR-family-oxidoreductase	gnl\|CDD\|180838	PRK07102, PRK07102, SDR family oxidoreductase.	2.44541e-130
NZ_CP014600.1\|WP_066112034.1\|27345_29025_-\|alpha/beta-hydrolase-fold-domain-containing-protein	gnl\|CDD\|369561	pfam07859, Abhydrolase_3, alpha/beta hydrolase fold. This catalytic domain is found in a very wide range of enzymes.	3.14701e-65
NZ_CP014600.1\|WP_066112453.1\|47725_48157_+\|heme-binding-protein	gnl\|CDD\|225734	COG3193, GlcG, Uncharacterized protein, possibly involved in utilization of glycolate and propanediol [General function prediction only].	4.21981e-30
NZ_CP014600.1\|WP_066112064.1\|46813_47704_+\|NAD(P)-dependent-oxidoreductase	gnl\|CDD\|224995	COG2084, MmsB, 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism].	2.87039e-50
NZ_CP014600.1\|WP_083191533.1\|49026_50046_+\|TRAP-transporter-substrate-binding-protein	gnl\|CDD\|270321	cd13603, PBP2_TRAP_Siap_TeaA_like, Substrate-binding domain of a sialic acid binding Tripartite ATP-independent Periplasmic transport system (SiaP) and related proteins; the type 2 periplasmic-binding protein fold. This subfamily includes the periplasmic-binding component of TRAP transport systems such as SiaP (a sialic acid binding virulence factor), TeaA (an ectoine binding protein), and an uncharacterized TM0322 from hyperthermophilic bacterium Thermotoga maritima. TRAP transporters are a large family of solute transporters ubiquitously found in bacteria and archaea. They are comprised of a periplasmic substrate-binding protein (SBP) and two unequally sized integral membrane components: a large transmembrane subunit involved in the translocation process and a smaller membrane of unknown function. The driving force of TRAP transporters is provided by electrochemical ion gradients (either protons or sodium ions) across the cytoplasmic membrane, rather than ATP hydrolysis. This substrate-binding domain belongs to the type 2 periplasmic binding fold protein superfamily (PBP2). The PBP2 proteins are typically comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	6.24268e-104
NZ_CP014600.1\|WP_066112055.1\|41673_43782_+\|hypothetical-protein	gnl\|CDD\|379232	pfam13517, VCBS, Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella. This domain of about 100 residues is found in multiple (up to 35) copies in long proteins from several species of Vibrio, Colwellia, Bradyrhizobium, and Shewanella (hence the name VCBS) and in smaller copy numbers in proteins from several other bacteria. The large protein size and repeat copy numbers, species distribution, and suggested activities of several member proteins suggests a role for this domain in adhesion (TIGR).	2.78615e-06
NZ_CP014600.1\|WP_066112067.1\|48161_48989_+\|sugar-phosphate-isomerase/epimerase	gnl\|CDD\|224007	COG1082, IolE, Sugar phosphate isomerases/epimerases [Carbohydrate transport and metabolism].	6.72204e-30
NZ_CP014600.1\|WP_066112451.1\|32846_33299_+\|GtrA-family-protein	gnl\|CDD\|377229	pfam04138, GtrA, GtrA-like protein. Members of this family are predicted to be integral membrane proteins with three or four transmembrane spans. They are involved in the synthesis of cell surface polysaccharides. The GtrA family are a subset of this family. GtrA is predicted to be an integral membrane protein with 4 transmembrane spans. It is involved is in O antigen modification by Shigella flexneri bacteriophage X (SfX), but does not determine the specificity of glucosylation. Its function remains unknown, but it may play a role in translocation of undecaprenyl phosphate linked glucose (UndP-Glc) across the cytoplasmic membrane. Another member of this family is a DTDP-glucose-4-keto-6-deoxy-D-glucose reductase, which catalyzes the conversion of dTDP-4-keto-6-deoxy-D-glucose to dTDP-D-fucose, which is involved in the biosynthesis of the serotype-specific polysaccharide antigen of Actinobacillus actinomycetemcomitans Y4 (serotype b). This family also includes the teichoic acid glycosylation protein, GtcA, which is a serotype-specific protein in some Listeria innocua and monocytogenes strains. Its exact function is not known, but it is essential for decoration of cell wall teichoic acids with glucose and galactose.	1.32242e-10
NZ_CP014600.1\|WP_066112049.1\|38694_39999_-\|AAA-family-ATPase	gnl\|CDD\|274585	TIGR03453, partition_RepA, plasmid partitioning protein RepA. Members of this family are the RepA (or ParA) protein involved in replicon partitioning. All known examples occur in bacterial species with two or more replicons, on a plasmid or the smaller chromosome. Note that an apparent exception may be seen as a pseudomolecule from assembly of an incompletely sequenced genome. Members of this family belong to a larger family that also includes the enzyme cobyrinic acid a,c-diamide synthase, but assignment of that name to members of this family would be in error. [Mobile and extrachromosomal element functions, Plasmid functions].	7.59887e-59
NZ_CP014600.1\|WP_066112043.1\|35483_36797_+\|DUF2029-domain-containing-protein	gnl\|CDD\|378217	pfam09594, GT87, Glycosyltransferase family 87. The enzymes in this family are glycosyltransferases. PimE is involved in phosphatidylinositol mannoside (PIM) synthesis, a major class of glycolipids in all mycobacteria. PimE is a polyprenol-phosphate-mannose-dependent mannosyltransferase that transfers the fifth mannose of PIM. The family also includes alpha(1-->3) arabinofuranosyltransferase, invloved in the synthesis of of mycobacterial arabinogalactan.	9.27466e-14
NZ_CP014600.1\|WP_066112052.1\|40809_41493_+\|hypothetical-protein	gnl\|CDD\|273037	TIGR00362, DnaA, chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006). [DNA metabolism, DNA replication, recombination, and repair].	1.38767e-05
NZ_CP014600.1\|WP_066112036.1\|29488_31006_-\|peptide-MFS-transporter	gnl\|CDD\|225646	COG3104, PTR2, Dipeptide/tripeptide permease [Amino acid transport and metabolism].	4.16406e-122
NZ_CP014600.1\|WP_066112031.1\|25998_27306_+\|tetratricopeptide-repeat-protein	gnl\|CDD\|236983	PRK11788, PRK11788, tetratricopeptide repeat protein; Provisional.	7.90776e-06
NZ_CP014600.1\|WP_066112045.1\|37588_38698_-\|replication-protein	gnl\|CDD\|319262	cd16405, RepB_like_N, plasmid segregation replication protein B like protein, N-terminal domain. RepB, found on plasmids and secondary chromosomes, works along with repA in directing plasmid segregation, and has been shown in Rhizobium etli to require the parS centromere-like sequence for full transcriptional repression of the repABC operon, inducing plasmid incompatibility. RepA is a Walker-type ATPase that complexes with RepB to form DNA-protein complexes in the presence of ATP/ADP. RepC is an initiator protein for the plasmid. repA and repB are homologous to the parA and ParB genes of the parABS partitioning system found on primary chromosomes.	2.04575e-10
NZ_CP014600.1\|WP_083191530.1\|22826_24737_-\|ATP-dependent-metallopeptidase-FtsH/Yme1/Tma-family-protein	gnl\|CDD\|273520	TIGR01241, ATP-dependent_zinc_metalloprotease_FtsH, ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH. [Cellular processes, Cell division, Protein fate, Degradation of proteins, peptides, and glycopeptides].	0
NZ_CP014600.1\|WP_083191531.1\|31239_32841_+\|UbiA-family-prenyltransferase	gnl\|CDD\|236195	PRK08238, PRK08238, UbiA family prenyltransferase.	0
NZ_CP014600.1\|WP_157374396.1\|25117_25996_+\|hypothetical-protein	gnl\|CDD\|366565	pfam01298, TbpB_B_D, C-lobe and N-lobe beta barrels of Tf-binding protein B. Bacterial lipoproteins represent a large group of specialized membrane proteins that perform a variety of functions including maintenance and stabilization of the cell envelope, protein targeting and transit to the outer membrane, membrane biogenesis, and cell adherence. Pathogenic Gram-negative bacteria within the Neisseriaceae and Pasteurellaceae families rely on a specialized uptake system, characterized by an essential surface receptor complex that acquires iron from host transferrin (Tf) and transports the iron across the outer membrane. They have an iron uptake system composed of surface exposed lipoprotein, Tf-binding protein B (TbpB), and an integral outer-membrane protein, Tf-binding protein A (TbpA), that together function to extract iron from the host iron binding glycoprotein (Tf). TbpB is a bilobed (N and C lobe) lipid-anchored protein with each lobe consisting of an eight-stranded beta barrel flanked by a handle domain made up of four (N lobe) or eight (C lobe) beta strands. TbpB extends from the outer membrane surface by virtue of an N-terminal peptide region that is anchored to the outer membrane by fatty acyl chains on the N-terminal cysteine and is involved in the initial capture of iron-loaded Tf. This domain family is found in C and N lobe eight stranded beta barrel region of TbpB proteins. The eight-stranded barrel domains in N and C lobe draw comparisons to eight-stranded beta barrel outer-membrane protein W (OmpW). However, the barrel domains of TbpB have the hydrophobic residues line the inner surface of the beta barrels to create a stable hydrophobic core.	2.17589e-08
NZ_CP014600.1\|WP_066112038.1\|33295_34687_+\|FAD-binding-oxidoreductase	gnl\|CDD\|223354	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion].	2.0734e-24

>NZ_CP014600.1|WP_066112043.1|35483_36797_+|DUF2029-domain-containing-protein
MQDSSPALAETALPGARVPGEPVLFRLSAMSRAVLMAMLLAMLLFATAQHMGGLFGKDPLFLDFNVFYMVGEYVWQGRVAETYDFGLFAPAQDAVNGPDQGFMPWTYPAQMDLFVALLALLPRWLAYFAFAAGSLAGFLWVLKRLAGVHFDAALVLVLPALMVTLLTGQNGMMTAALVGSYALLALRGTGSGSGTGSGTGSGSAGVPLGLMAIKPHLAVGLALHALMTGRWKVLAVSVAVTLAAVAAATLAFGPGIWAVVAQSARDSGTYLAEGRYPLFRMSSVYAGLRNSGASADLAFAAQASVAALALGLVAALALRRWQPRRLLGVALLSSYAVSPYNYDYDLCALGMALALLLPDAARFAGVGGKIALAVCCWSACGLAVFGASVPGRFDSLMAALSMRGEFPSIATLGYLGAFGLLLCYAVKGERAAGAGTY
>NZ_CP014600.1|WP_066112040.1|34683_35424_+|SDR-family-oxidoreductase
MTTLPPVLILGARSDIGLAVAHRFAAAGHPLQLAARHAGTLEPERADLALRHGVSVTLHEFDALDTAGHGAFVEALPQLPGIAVCAVGLMGTQEHSAAEPEAAIAVLRSNFEGPAIILAHLANRFEARGSGTLVGISSVAGERGRATNYVYGAGKAGFTAFLSGLRNRLAGRGVQVLTVLPGFVATRMTEGMDLPQKLTAAPEEVAEAIFRGCSKGRDVIYVRPIWRVIMAVIRAIPERVFKKLSL
>NZ_CP014600.1|WP_066112038.1|33295_34687_+|FAD-binding-oxidoreductase
MKLTGWGRFAPRDTALEAPRDAQALRALLARPSARDPAATDPTATETAATDKAQGGAIARGNGRAYGDAAVGAQTTLSTRHLNRMIAFDAQSGQLVAEAGVLLSDVIDAFLPRGWFPMVTPGTRFVTLGGMAAADVHGKNHHLDGSFRTCVDWLDLMGPDGEIRRCSRTENAELFDWTLGGMGLTGVILRLALRLRAVESGWIGQTTLPCPDLDAVLRGFEEHESAPYSVAWIDCLASGGALGRSLLTLGHHLPRAKLEAAQAADPFASAKRGARKLPFDLPSFALNRHSVRGFNALYYRRGCAAAGAGVTDWQSYFYPLDAILGWNRIYGRRGFVQFQCVLPDTSARAGLAALLRATAETGCASFLAVLKRFGAQDGAFSFPMQGYTLAMDFPASRRALALLDRLDAITLTHGGRFYLAKDARMSAETLHRADPRAADLAALRARAGMAAPLQSALSQRLSL
>NZ_CP014600.1|WP_066112451.1|32846_33299_+|GtrA-family-protein
MSLPTLVLRYAGFALLAMAANLGTQRAVLAFGDPEQLLLPAIALGTLIGLAVKYTLDKRWIFHDRGTTPLPRQFALYSLMGLATTALFWGTETAFWLLWHSDAARELGAALGLTVGYVVKYRLDRRFVFAVAMTGEDSNETPREGQEQAA
>NZ_CP014600.1|WP_083191531.1|31239_32841_+|UbiA-family-prenyltransferase
MISSQVTGFTAAEQPLESGSNVVALRGALAPQFQPEPITDTDTARQTPRETLSSPGLLVVDLDGTLVHTDTLFESFWSALGRDWRGALGAARALLQGRAAVKHSLAQAAALEAEHLPYDRAVLAYIEAWRAEGGRAVLVTAADQSIADAVAAHTGLFDEAHGSDGQTNLKGARKAAFITARWGASRFAYMGDASADLPIWQHASRAITVNAPAALRRRSERVAQHTEHMRTRGFALRPYLDALRPHQWLKNLLVFLPMLAAHQISAGSLGHALAAFASFCLVASAVYVLNDLLDLNSDRAHPRKRARPFASGRLPIAHGPAMLLALGGGGLGIAMAMGPQMLAVMTGYMTLTTAYSLYLKRAAVIDILALAGLYTMRMVAGAVALGIELSAWLAAFSLFFFFALAAVKRQAELVDHKARGKTAPAGRGYSTDDLPIITMVGLGSGYLSVLVMALYVTSPAVLALYSMPQALWGICAVLLYWVTRMVLLTQRGQMHDDPVVFAARDRVSHFSALAILGFGLWAALGETLWTALT
>NZ_CP014600.1|WP_066112036.1|29488_31006_-|peptide-MFS-transporter
MSRFARYPAGLPALFLVEMWERFSFYGMRAILVLYLIDAVETGGMGMQTSEAVAIYGIYSAAVYILALPGGWIADRFWGARRAITVGGLVIILGHILLAISGSTAWIFLAGLVCIALGTGLLKPNISSMVGELYPKDDVGGRDAGFSFFYMGINIGAILGGFVAGYLGEVWGWHYGFGAAAVAMLLGLLNFLHAGRGSLRGKGARPPQKDAAEAGRDRLVSLGLSAAVVLILGALIAAGVLDVRSAEGVAQATGVLIVTVAVGFFLNIYIAGELSADEKKRMIVLAILFVAAALFWSRFEQAGSSLSIFAAELTRRDLMGFEVPASWFQNLNPAFIILLTPLFAWFWTRAQDRGWEISVFVKFGLALVLVGLGFWLLVPAAKVAMTGVRVSALFLIGTFFIHTCAELLLSPVGLSTFSRLAPERFTSQMMGFWFLAASLGNLIAGLLAAGMDTETPSELPGLFNGLFTGSAVAGLVLIALARPLTRWALSGNETLAAAEDTGQHG
>NZ_CP014600.1|WP_066112034.1|27345_29025_-|alpha/beta-hydrolase-fold-domain-containing-protein
MEDVSVKKREPGPNGDSRARRNWKQNPEAVRANILKVAREAFVAHGLTGAKIDDIAARTETSKRMIYYYFGDKEGLYRAVLQEAYSRVRSAEDELELASLHPVEALRRLAEFTFDHHAEDRDFVRLVMVENIHDARHMQSDGDMAGQNISAIRLLDEIYQRGCAAGLFRRGLTALELHWHISALAVFNVSNRATFSSLFGDDLFTPKGQQQLRRHVGDMMLRFVMKPGLSVEEASSKPISETRVIHPDIYRFRETWDATWASLPTDGDAATRRLHFESVSRSLRLPSPDGVETDEEHWIDSEAEPVRVRLFRPEGPEPLPALIYLHGGAWRQGSPETHWNITARLAALSGYLVISADYALAPEAPYPAALQQIGAVVAWAKAQHEMLGIDPAKLAIGGDGAGGNLAAVTALRCRDAGVSLSAQLLIYPICDFDTTRPSAQVNREGPLWTLDQLMAAQEQYCPDTSLRTHDPQLAPLLASSHAGLPPAYIALAEHDPLRDSGAAYGEALEAAGVPVAVDPGSGLVRDYLHAIGFGTVAEERLRGMGGWLRSQAGKSVAGE
>NZ_CP014600.1|WP_066112031.1|25998_27306_+|tetratricopeptide-repeat-protein
MARIGPRAAARRTVLPRVATLALLALLGGGLGAGTARAQDMAPAATPEASPEVAPAQIEARFQQAMTTRDPEAAVRLLRRILAQDPGLVRVRLELARALFEAGQYARSREQFRIVLSSPDLPPQVRDNVLRFMRAIDEKRGWRAEYSIGLRAPRGAGRSYDTDTFDFDLGDGPLPFVMNRPDPPLTGLALSGAARRQWPLATRMGGATLTAYLRGAGEIYETEGDIFDEASAELAAGLQFTWPRSTAYLELLAGTDYDAWEMTEERLGLGAGISWRSASGLTTALEAELMDVTLGGFEGEDVTRASASATVIKPLGGRAQIAASLSLQHQAAWRDDLSYDYAELRFGGRTEVSGGFLLEPSVYALAFEQVAAGAGFSETRSEREYGLELRIDKTDTFVFGRLTPYVEIAAARRNSSIDAYSYRELRIGAGLSSAF
>NZ_CP014600.1|WP_157374396.1|25117_25996_+|hypothetical-protein
MKYLVVGVAAVSLLSACGGSGGGSNNSTGLSELVSFVEDGSADGTYSASGMGVSTHYVTNADGTVTSVETPVSDRNVDASLTFEDGELDAVSVETPDGTLTFSRSAGDTFILQEGAITAVSADGDRVMVAADPFQQGYEYQSYGTWQTGLTGTTRLAGAGSIGARTSASQMPSSGTASYYGDSTGQVFTDGDVAVTTSYIAVDTDFDTVEVYSSETITADPITGVITGSRPDLDFYAEGSVSGTGFAATMDTGTLTGTVDGQFYGPDAAEVGGTFSGTTADSTYIGAFGAIQ
>NZ_CP014600.1|WP_083191530.1|22826_24737_-|ATP-dependent-metallopeptidase-FtsH/Yme1/Tma-family-protein
MADKQKPPDRSPPPPLPEQWLRVAILLVAIVITLALVLDENTQTSTAETRSYSAVKEMIAGGKVTSATLADHAITISVPDAAGGTTLYRATTPAQSDPSLLPLLEDHKVPITADPPSDSSIWMFLLPWMLILGVYFWLQRRMIGQMGGGMGAGGAAGLFKGRFSTPAETRTLVTFADVAGQEQAKREVAELVDFLREPERYQSVGAEVPHGVLLMGPPGTGKTLMAKALAGEAGVPFFSTSGSEFIEVFVGVGAGRVRKMFEAARKAAPAVIFIDELDSIGRTRGTGLGGGHDEREQTLNQILAELDGFEGKEAVVVLAATNRPDVLDPALLRPGRFDRHVTLSLPDRAGRLAILKLHSADLPLETPGDLAEIAAGTPGFSGADLKNLLNEGAINAARRRAQSITTADLQEARDKVMMGTVRSLAIAPGERHRLAVHEAGHAAAAFYSPGADPLYKVTIIPRGQALGGTHMLEGEEHHTLPEEYLRTQLLILLAGRAAERRFTGSVSSGADDDIRRATRLARSMVTRWGMTEALGPVDLRTSEDSPFLGQSFAQPREHSDATAARADAAVILLLKEAEQGAAALLEAHETEILGLVSQLEREETLDSAQISKLLAGAGNVHRIERPTNGRSGGEPG
>NZ_CP014600.1|WP_066112045.1|37588_38698_-|replication-protein
MSKRRGFDIDFPETPDGVYTGGGRKTASDESARPSVPAGTRRGPMAAAISENAEALRDRAEAERAIREENDRLAHDYVRLKRAGLITDLVPIDAVLTTKLTRDRAAGPDPEIEELKASIREVGLSNPIRVEPVGDHFELVQGFRRLSAFRELYAETGDEAYARIPAGLVASGEALVGLYRKMVDENLVRRGISFAEMAQLALSFARDPATDTTDIEEAITLLYASAGRQKRSYIRHFATLLEELGGELRHPEAISRQLGLDLVKRMGDEPGFSAGLKTMLAGQGEVSSDYEVARLTDAVKSAPKATPKPKGSSANAAAKTTLRCTVPAGTVRCAARDGKVELAMERDFSSIDRHRLEAAVAAFMAALDD
>NZ_CP014600.1|WP_066112049.1|38694_39999_-|AAA-family-ATPase
MFTHEDLARLQAQSLKMQGWIRQQTFSPEMEKTLRRFSSWEVAELILQVNQSTLRGRMAADPHLPQGLVEEDGRQRWYSLEEINEIRRKLKVNRKSLMPPRPAKKRAFRVAISNFKGGAGKSTVALHFAHAAALDGYRVLCVDFDPQATLSHSMGLSDITEEYTVWGIMARDLIRETERMNAATRGAESGSSLPERRLPEAITSMGLRDLRAADFIKPTSWPTIDIIPSCANAAFVEFASAQYRHLNPEWSFFAAVSRYLDSLPPDAYDLVIFDCPPAIGYQSMNAVFAADMLYIPSGPGYWEYDSTTSFIGQLSEALGDLSGFEGVVPAGTLTLPKAFLDVRFLLTRYESGNDLHRAMRQAFQKVWDERMTEHPIEMTRAVEQSGRFLSSIYEIDYREMTRETWRRARASFDRAYEEFRSHVLTAWDKLEDEA
>NZ_CP014600.1|WP_066112052.1|40809_41493_+|hypothetical-protein
MLATKAAGRNAAAMKYDLLTVMGAYALAQDKGRQRLVLRLMTLVTARYNWARDELAVGQREIARLWLVDERTVKREMAKLRAMGWLKVKRQGARGRVSEYSLAIERILEDSRTRWGDVGPDLEQRLSGSEPVDEKVVPLPVKGKIPAPNLADESEWGLARAVLHGEDPALYAAWFAALERRERAGGRLVLVAPSRFHASYVSGHLGARLLSACRAVDGGVDEVQVVT
>NZ_CP014600.1|WP_066112055.1|41673_43782_+|hypothetical-protein
MPAALSQSSVFSFPDFSPTATLSLGLTEAEALSIGAGFAVASNPHPSGDAYLQATGASAQAGGVFDGVAGLYDLTVAYFDETDGVSMMEVLVNGTVVASFDWDSTTGDAIVTAASKADYTVTGLVLAPGDMIELRGARDGGEPLRTDYVEISAAAAPSLGESFVIEAEDLQIVSGFSVKSNGAASGREMLQHTSGDEARASYSVQQTGSFDLTIGYFDETDGVSWLQVLVNGAEVASFDWDGTGGASIASRASLVEEVIEGLALEAGDTIELVGQGDGGEPLRVDYLQFTSVEPGASGPSAPATLDLWYLRDGEVYVALNDGSGGFTELATGVTPDGTLRAVDMDGDGDLDFLDVAVVDPFPLPEATSPADEFVFEVVTTVYENDGSGGFTETTSDSTSFVAGLYGYPASEVDRLWQILQTGDAGDIDGDGDVDFAAVSLIAGRIMIFDNAGDDTFNLIELPVPDEVYELSQGGNFAGLADMNDDGKLDLLLSVSWNFSSTLVMINDGAGGFDPVGSYGASDDGNSTEIPADLDGDGDLDVLFVAISDGGGIYTYINDGTGARDAAAVAPSFPESELNGIGFLQIGDYDGDGKLEMVGASIEDASAGLDPGLRLFEFPLEEGELSIEVASLDPSLVGELTAQGDFDGDGDIDLILVAEESADTFVLINDGTASFTAVPTGLDAFSSNYPTLYAGELGDLLVA
>NZ_CP014600.1|WP_083191532.1|43994_44858_+|IclR-family-transcriptional-regulator
MKKIWSDAPASCSFRGREELQMSNDLSIRDQAAPPEKTIQSVDRALAILETIARHRGEVTLALICEDLGLNASTCHHIIKTLIARNYVRPGTARGRYMLGSQVVLIADAVNIKAELPGRARPVLDALNQTTEEAVHLAVLQGDEMITLVKRDALHALRVDSGSIGKSTAMHATATGKALLSGLPEAEVRRLTTQHGMKAFTSHTVTDIDTLLAELAEVRATGCAMDREEFQLYVVCIGAPVLDVKGKVMASLSVSTPINRATEAHLSLVRQEVLSAARSLSLSRYDP
>NZ_CP014600.1|WP_066112061.1|44873_46778_+|thiamine-pyrophosphate-binding-protein
MNKQDVKITAALSGAEGTRARAEAIAASGGFEEALAEGTLPQLAELSLSEALVLGLLKQGTRKYLAIFGHGSTDLGEVLRIYTEAGVTQTYNFRNEVEMAHAATALSWHYGEVPALVTSIGPGALQAMAGSLAAASNGVGVWHVYGDETTLGEGYNMQQIPKAEQALYPRMTALMGESYMLWRPQALRDALRRGGQKVFAPAKAGPFYLHLPINVQPEVAEFNLASFPARPAFEPLAPEGEGAITRAAELIARTDRVVLKAGGGCRGFDAEIRALARAAGASVVLSPGSTGVLADDDPLNMHVGGSKGSLSGNFAMEHAELVIVAGSRAVCQADCSGIGYPRARAVVNLNADAGDAMHYNDTISLLGDLGAVARRLTAALEARTGDPGKEKWLEECAARKAEWGAFKAERLALPPQVDPVWQAPVLAQPAAIGIVSEFANAIGAVKYFDAGDVQANGFQIVADSRSGQTFTETGASYMGFATSGILASAIADTPDYVIAFTGDGSFMMNPQALIDGVEHGLRGMIVIFDNRRMAAISSLQLAQYGRDFRTNDGVAVDYAQMAGSVSGVLSLSVGGTADALRTALEQGQAHDGLSVLHVPVYSGEEPRAGMGSWGKWNVGNWVEDVQSRWLRQSL
>NZ_CP014600.1|WP_066112064.1|46813_47704_+|NAD(P)-dependent-oxidoreductase
MSKRTVGFVGVGNIGTPMVLSMLRADLDVLVRDLRKDQAAECLAAGARFAESNAQLCEECETIGVAVVNDAQLNRLFRDAGGLLELAKPGTVLIVHSTVLPETILALGKECDARGLKLIDAQVSGGDLRAREGDLAVMAGGDKAVIDANRDYFDAISRRTEHMGELGLGAATKVAIQMMTFGNWLAAMEAMRVARAHGIDEKLLADFATDTTSDSWVCQVWGNYDRLLHNHPLTGSEELFRFFDKDLFNALLVARGKDLSLPFTAAGSQALEGAMRERMELSAEQYAKPATQVRSA
>NZ_CP014600.1|WP_066112453.1|47725_48157_+|heme-binding-protein
MTALTRPKAVVTLAAAEALIDRAFAHAEKIGKSVCVAVVDDGGFLMAFRRMDATNPAAGQIAIDKAYTAAVSHIPTHKWQEIMQSDEPLRIGVPGVVHRMITYGGGQPIVVDGQIIGAIGCSGGHWTGDTEIGTEALKIFEEG
>NZ_CP014600.1|WP_066112067.1|48161_48989_+|sugar-phosphate-isomerase/epimerase
MTDQITLPLSFHTGFLSDLPVLEAVRKIRDHGYEMVELNGELLPWGPAHITPDTPRAVIDKLAGMGPYSALCIHHCDFGSSRDDRRDAALAWGREMMDRAVDLGIGLVHVIPGEETGIAALHRSLAVAVEDAERRGLTLALEAIVGRQIGTVQTALAALEAAPGLKINFDPSHYHPMGDDTTEAAKALLPHIAHVHLKDAVGGPEDFRFVPLGEGGIDLTAMLRVLLEGGYRGAVSIEHESHFFAGDARGADEVLRDCRADFDALMARAQGAPVV
>NZ_CP014600.1|WP_083191533.1|49026_50046_+|TRAP-transporter-substrate-binding-protein
MNRFSLNRRGFLQGAGALSLAAGLGVRPALAGAKTKLKLSHQLGATHPSYQAAERMAAAIEERTGGELSIAIFPNSALGSPPETVKQAQMGAIDLVMFNPPNIEAQDKSAGVIQIPYQFDGYEHAHRVLGETARPWLDAFLQRNGLAWIANFEYGFRALSNSRRPVMTPDDVKGLKLRVPPELSIQATFEALGANTQTIAFGELYLALSSGTVDGQDNPISVDYANKFYEVQSHIATTRHVYTSFMLTGNPRSLDGLSDEHRAILSEEALKAGKEAQAEVQAGEEDMLAKMEAEGVQVTRPDPGPFRDMMGPAWERLRERIGGETWDEWMGYVEAARTS

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP014600_1	1.1\|37169\|48\|NZ_CP014600\|PILER-CR	37169-37216	48	NZ_CP014600	Yangia sp. CCB-MM3 plasmid unnamed4, complete sequence	37168-37215	0	1.0
NZ_CP014600_1	1.2\|37235\|59\|NZ_CP014600\|PILER-CR	37235-37293	59	NZ_CP014600	Yangia sp. CCB-MM3 plasmid unnamed4, complete sequence	37234-37292	0	1.0

1. spacer 1.1|37169|48|NZ_CP014600|PILER-CR matches to NZ_CP014600 (Yangia sp. CCB-MM3 plasmid unnamed4, complete sequence) position: , mismatch: 0, identity: 1.0

agagaaagccggtcgatgcgccagcgctcagagagcctttgccggggt	CRISPR spacer
agagaaagccggtcgatgcgccagcgctcagagagcctttgccggggt	Protospacer
************************************************

2. spacer 1.2|37235|59|NZ_CP014600|PILER-CR matches to NZ_CP014600 (Yangia sp. CCB-MM3 plasmid unnamed4, complete sequence) position: , mismatch: 0, identity: 1.0

gtgatcacccgccccagaaagagccctctgccacggccaaggcgcgcgccaaatctgcg	CRISPR spacer
gtgatcacccgccccagaaagagccctctgccacggccaaggcgcgcgccaaatctgcg	Protospacer
***********************************************************

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

4. NZ_CP014596

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

345414 : 408284

Moumouvirus(10.0%)

transposase,integrase,protease,tRNA

attL 368675:368690|attR 401079:401094

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_066107919.1\|345414_346185_-\|tRNA	tRNA pseudouridine(38-40) synthase TruA	NA	NA	NA	NA
WP_066107922.1\|346404_347832_+	YcjX family protein	NA	NA	NA	NA
WP_066110380.1\|347891_348308_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_066107924.1\|348304_349342_+	TIGR01620 family protein	NA	NA	NA	NA
WP_066107927.1\|349491_350190_+	hypothetical protein	NA	NA	NA	NA
WP_066107929.1\|350421_350673_-	hypothetical protein	NA	NA	NA	NA
WP_066107931.1\|351129_354048_+\|tRNA	isoleucine--tRNA ligase	M1NN51	Moumouvirus	8.5e-66	24.3
WP_083191318.1\|354170_354671_-	hypothetical protein	NA	NA	NA	NA
WP_066107934.1\|354953_355475_-	acyloxyacyl hydrolase	NA	NA	NA	NA
WP_066107937.1\|355609_356065_-	low molecular weight phosphotyrosine protein phosphatase	NA	NA	NA	NA
WP_066110384.1\|356141_356831_+	NAD-dependent deacylase	A0A023MHA7	Escherichia_phage	7.0e-19	33.0
WP_157374201.1\|356834_357272_-	copper chaperone PCu(A)C	NA	NA	NA	NA
WP_066107943.1\|357474_357765_-	50S ribosomal protein L28	NA	NA	NA	NA
WP_066107946.1\|357882_358884_-	methylmalonyl Co-A mutase-associated GTPase MeaB	NA	NA	NA	NA
WP_066107949.1\|359006_360113_-	acetylornithine deacetylase	NA	NA	NA	NA
WP_066110386.1\|360109_361768_-	amidohydrolase	NA	NA	NA	NA
WP_066107950.1\|361846_362866_-	extracellular solute-binding protein	NA	NA	NA	NA
WP_066107953.1\|362901_363702_-	ABC transporter permease	NA	NA	NA	NA
WP_066107956.1\|363698_364562_-	ABC transporter permease	NA	NA	NA	NA
WP_066107958.1\|364558_365632_-	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	1.7e-27	36.0
WP_066107962.1\|365691_367755_-	NADH:flavin oxidoreductase	NA	NA	NA	NA
WP_066107968.1\|367938_368871_-	LysR family transcriptional regulator	NA	NA	NA	NA
368675:368690	attL	NA	NA	NA	NA
WP_066107972.1\|368937_370419_-	aldehyde dehydrogenase	NA	NA	NA	NA
WP_066107974.1\|370523_371792_-	SidA/IucD/PvdA family monooxygenase	A0A2H4J2Q2	uncultured_Caudovirales_phage	1.0e-07	35.8
WP_066107976.1\|372028_374476_-	ATP-dependent helicase HrpB	A0A1V0SH94	Hokovirus	2.0e-23	25.2
WP_066107979.1\|374615_375416_-	transglycosylase SLT domain-containing protein	A0A1P8CWQ1	Bacillus_phage	3.0e-21	41.9
WP_066107982.1\|375972_376164_+	hypothetical protein	NA	NA	NA	NA
WP_066110388.1\|376320_376506_+	hypothetical protein	NA	NA	NA	NA
WP_066107985.1\|376840_377698_+	Flp pilus assembly protein CpaB	NA	NA	NA	NA
WP_066107988.1\|377936_379355_+	type II and III secretion system protein family protein	NA	NA	NA	NA
WP_066107991.1\|379359_380019_+	OmpA family protein	NA	NA	NA	NA
WP_066107993.1\|380222_381461_+	AAA family ATPase	NA	NA	NA	NA
WP_066107995.1\|381473_382928_+	CpaF family protein	NA	NA	NA	NA
WP_066107997.1\|382933_383899_+	pilus assembly protein TadB	NA	NA	NA	NA
WP_066108000.1\|383909_384881_+	type II secretion system F family protein	NA	NA	NA	NA
WP_066108003.1\|384886_385471_+	tetratricopeptide repeat protein	NA	NA	NA	NA
WP_066108006.1\|385528_386389_+	tetratricopeptide repeat protein	NA	NA	NA	NA
WP_066108010.1\|386399_386906_+	hypothetical protein	NA	NA	NA	NA
WP_066108013.1\|386916_387702_-	pyrroline-5-carboxylate reductase	NA	NA	NA	NA
WP_066108016.1\|387905_389213_+	ATPase	NA	NA	NA	NA
WP_066108021.1\|389666_389873_+	AlpA family phage regulatory protein	NA	NA	NA	NA
WP_066108022.1\|389882_390248_-	hypothetical protein	NA	NA	NA	NA
WP_066108025.1\|390349_390679_-	hypothetical protein	NA	NA	NA	NA
WP_066108028.1\|390791_391064_+\|transposase	transposase	NA	NA	NA	NA
WP_083191320.1\|391145_391376_+\|transposase	IS3 family transposase	NA	NA	NA	NA
WP_157374203.1\|392232_392586_-	hypothetical protein	NA	NA	NA	NA
WP_157374205.1\|392709_394061_-\|transposase	IS3 family transposase	Q8W6R2	Burkholderia_virus	2.5e-12	30.1
WP_157374173.1\|394701_395827_+\|transposase	IS3 family transposase	S5WIU1	Leptospira_phage	1.3e-30	32.4
WP_066108039.1\|396503_397781_+	hypothetical protein	NA	NA	NA	NA
WP_066108043.1\|398318_398951_+\|integrase	tyrosine-type recombinase/integrase	Q7Y4J2	Streptococcus_phage	8.7e-08	26.7
WP_066108046.1\|399184_401707_-	hypothetical protein	NA	NA	NA	NA
401079:401094	attR	NA	NA	NA	NA
WP_157374207.1\|402488_402662_+	hypothetical protein	NA	NA	NA	NA
WP_066108051.1\|403153_404239_-	hypothetical protein	NA	NA	NA	NA
WP_066108054.1\|404984_405791_+	DUF4394 domain-containing protein	A0A167R2B9	Powai_lake_megavirus	8.7e-21	38.3
WP_066108057.1\|405985_406516_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA
WP_066108062.1\|406512_407241_+	hypothetical protein	NA	NA	NA	NA
WP_066108065.1\|407531_408284_-\|protease	AprI/Inh family metalloprotease inhibitor	NA	NA	NA	NA

DBSCAN-SWA_2

895192 : 953178

Leptospira_phage(42.86%)

integrase,transposase

attL 891147:891161|attR 918708:918722

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
891147:891161	attL	NA	NA	NA	NA
WP_066109148.1\|895192_897403_-\|integrase,transposase	DDE-type integrase/transposase/recombinase	NA	NA	NA	NA
WP_157374239.1\|897402_898146_-	hypothetical protein	NA	NA	NA	NA
WP_066109154.1\|899477_902390_-	hypothetical protein	NA	NA	NA	NA
WP_083191351.1\|902910_905160_+	autotransporter outer membrane beta-barrel domain-containing protein	NA	NA	NA	NA
WP_066109160.1\|905242_905512_-	hypothetical protein	NA	NA	NA	NA
WP_157374241.1\|905986_906744_-\|transposase	IS5 family transposase	A0A0N9SJT9	Paenibacillus_phage	2.2e-10	36.4
WP_157374243.1\|907036_908254_+	hypothetical protein	NA	NA	NA	NA
WP_066109170.1\|908779_910579_-	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_066109173.1\|910718_912449_-	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA
WP_066109176.1\|912665_913691_+	ABC transporter permease	NA	NA	NA	NA
WP_157374245.1\|913693_914590_+	ABC transporter permease subunit	NA	NA	NA	NA
WP_066109184.1\|914595_915438_+	ABC transporter ATP-binding protein	NA	NA	NA	NA
WP_066109187.1\|915434_916181_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	1.1e-22	35.8
WP_066109190.1\|916423_918013_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_066109193.1\|918050_919199_-	mandelate racemase	NA	NA	NA	NA
918708:918722	attR	NA	NA	NA	NA
WP_083191353.1\|919410_920172_+	FadR family transcriptional regulator	NA	NA	NA	NA
WP_083191354.1\|920270_921176_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_066109195.1\|921270_922233_+	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA
WP_066109198.1\|922234_924094_+	TRAP transporter fused permease subunit	NA	NA	NA	NA
WP_066109200.1\|924090_925428_+	DUF1446 domain-containing protein	NA	NA	NA	NA
WP_066109204.1\|925464_925764_+	hypothetical protein	NA	NA	NA	NA
WP_066109207.1\|925984_926854_-	ABC transporter permease	NA	NA	NA	NA
WP_083191355.1\|926850_927213_-	ABC transporter permease subunit	NA	NA	NA	NA
WP_157374189.1\|927279_928409_-\|transposase	IS3 family transposase	S5WIU1	Leptospira_phage	9.3e-37	35.9
WP_066109210.1\|928446_929100_-	hypothetical protein	NA	NA	NA	NA
WP_066109212.1\|929096_929438_-	TOBE domain-containing protein	NA	NA	NA	NA
WP_157373999.1\|929510_930637_-\|transposase	IS3 family transposase	S5WIU1	Leptospira_phage	1.0e-30	32.4
WP_083191356.1\|930674_931046_-	hypothetical protein	NA	NA	NA	NA
WP_157374247.1\|931892_932393_+	hypothetical protein	NA	NA	NA	NA
WP_066109216.1\|932843_933230_-	DUF1311 domain-containing protein	NA	NA	NA	NA
WP_066109219.1\|933615_934614_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_083191399.1\|934720_935722_+	D-cysteine desulfhydrase	NA	NA	NA	NA
WP_083191358.1\|935761_936613_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_066109222.1\|936646_937363_+	amino acid ABC transporter permease	NA	NA	NA	NA
WP_066109227.1\|937362_938019_+	ABC transporter permease subunit	NA	NA	NA	NA
WP_066109230.1\|938015_938744_+	amino acid ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	8.4e-31	36.8
WP_066109233.1\|938740_939754_+	putative sulfate exporter family transporter	NA	NA	NA	NA
WP_083191359.1\|939805_940495_+	histidine phosphatase family protein	NA	NA	NA	NA
WP_066109239.1\|940716_942615_+	amidohydrolase	NA	NA	NA	NA
WP_066109244.1\|943191_943578_-	DUF1311 domain-containing protein	NA	NA	NA	NA
WP_157374249.1\|943882_944533_+	hypothetical protein	NA	NA	NA	NA
WP_157374251.1\|944627_945038_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_157374253.1\|945184_945562_+	hypothetical protein	NA	NA	NA	NA
WP_066109258.1\|945612_946593_+	SH3 domain-containing protein	NA	NA	NA	NA
WP_066109262.1\|946644_948711_+	M13 family metallopeptidase	E3T4I7	Cafeteria_roenbergensis_virus	1.4e-51	24.6
WP_066107743.1\|948859_949879_+\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_066109265.1\|950733_951978_+	hypothetical protein	NA	NA	NA	NA
WP_157374255.1\|952052_953178_+\|transposase	IS3 family transposase	S5WIU1	Leptospira_phage	1.3e-30	32.4

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP014597

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP014595

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CRISPR-Cas detection and classification

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Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

3. NZ_CP014600

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

4. NZ_CP014596

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection