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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP016380 Aeromonas hydrophila strain AHNIH1 chromosome, complete genome 12 crisprs WYL,csa3,DEDDh,cas3,DinG 1 3 7 0
NZ_CP016381 Aeromonas hydrophila strain AHNIH1 plasmid pASP-135, complete sequence 0 crisprs RT 0 0 2 0

Results visualization

1. NZ_CP016380
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP016380_1 263558-263653 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP016380_2 543405-543480 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP016380_3 786967-787072 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP016380_4 804282-804395 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP016380_5 878943-879075 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP016380_6 1743972-1744171 Orphan NA
2 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP016380_7 1862864-1862948 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP016380_8 2050588-2050732 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP016380_9 2297303-2297406 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP016380_10 3571426-3571544 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP016380_11 3811197-3811338 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP016380_12 4340098-4340209 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
NZ_CP016380_6 6.2|1744102|41|NZ_CP016380|PILER-CR 1744102-1744142 41 NZ_CP016380.1 1743931-1743971 2 0.951

1. spacer 6.2|1744102|41|NZ_CP016380|PILER-CR matches to position: 1743931-1743971, mismatch: 2, identity: 0.951

tttggctgggagagcgaccgtcatttcctgtcttggcgagg	CRISPR spacer
tttggctgggataacgaccgtcatttcctgtcttggcgagg	Protospacer
*********** *.***************************

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP016380_2 2.1|543428|30|NZ_CP016380|CRISPRCasFinder 543428-543457 30 MT639649 Microbacterium phage Burritobowl, complete genome 10047-10076 7 0.767
NZ_CP016380_6 6.1|1744020|34|NZ_CP016380|PILER-CR 1744020-1744053 34 NZ_CP010024 Paraburkholderia fungorum strain ATCC BAA-463 plasmid pBIL, complete sequence 429616-429649 10 0.706
NZ_CP016380_9 9.1|2297328|54|NZ_CP016380|CRISPRCasFinder 2297328-2297381 54 MN961670 Pseudomonas putida strain 420352 plasmid p420352-IMP, complete sequence 182313-182366 12 0.778
NZ_CP016380_9 9.1|2297328|54|NZ_CP016380|CRISPRCasFinder 2297328-2297381 54 NZ_CP010016 Burkholderia thailandensis 34 plasmid unnamed, complete sequence 207352-207405 12 0.778

1. spacer 2.1|543428|30|NZ_CP016380|CRISPRCasFinder matches to MT639649 (Microbacterium phage Burritobowl, complete genome) position: , mismatch: 7, identity: 0.767

cacg-agtcatgcggtgctccctgtcatctg	CRISPR spacer
-gcgtcgtcatgcggcgccccctgtcatcct	Protospacer
 .**  *********.**.**********. 

2. spacer 6.1|1744020|34|NZ_CP016380|PILER-CR matches to NZ_CP010024 (Paraburkholderia fungorum strain ATCC BAA-463 plasmid pBIL, complete sequence) position: , mismatch: 10, identity: 0.706

acggccgtcatttcccgccttggtgatgggcacc	CRISPR spacer
gtgcttctcatttgccgccttggtgatcggctcg	Protospacer
..* .. ****** ************* *** * 

3. spacer 9.1|2297328|54|NZ_CP016380|CRISPRCasFinder matches to MN961670 (Pseudomonas putida strain 420352 plasmid p420352-IMP, complete sequence) position: , mismatch: 12, identity: 0.778

ccctaccatgtcaaggtagtgctctaaccaactgagctataaacccacatctgt	CRISPR spacer
ccccaccatgtcaaggtggtgctctaaccaactgagctatgtgcctgctgtggg	Protospacer
***.*************.**********************. .**..*  . * 

4. spacer 9.1|2297328|54|NZ_CP016380|CRISPRCasFinder matches to NZ_CP010016 (Burkholderia thailandensis 34 plasmid unnamed, complete sequence) position: , mismatch: 12, identity: 0.778

ccctaccatgtcaaggtagtgctctaaccaactgagctataaacccacatctgt	CRISPR spacer
ccccaccatgtcaaggtggtgctctaaccaactgagctacgagcctgaagaagc	Protospacer
***.*************.*********************..*.**.. *   *.

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 677427 : 757595 81 Aeromonas_virus(66.67%) tail,integrase,tRNA,head,terminase,capsid,holin,plate,portal,transposase attL 694366:694420|attR 728153:728207
DBSCAN-SWA_2 1651726 : 1660510 8 Enterobacteria_phage(42.86%) transposase NA
DBSCAN-SWA_3 2548205 : 2564656 12 Hokovirus(12.5%) tRNA NA
DBSCAN-SWA_4 2840496 : 2886130 36 uncultured_Mediterranean_phage(14.29%) protease,plate,tRNA NA
DBSCAN-SWA_5 3784079 : 3791588 8 Staphylococcus_phage(50.0%) protease NA
DBSCAN-SWA_6 3981931 : 4037992 47 Aeromonas_virus(23.08%) integrase,transposase,capsid,tRNA attL 3997401:3997417|attR 4035782:4035798
DBSCAN-SWA_7 4041855 : 4051791 10 uncultured_Mediterranean_phage(25.0%) tRNA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
2. NZ_CP016381
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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 59723 : 121930 59 Escherichia_phage(47.62%) integrase,plate,tail,transposase attL 92241:92300|attR 113798:114712
DBSCAN-SWA_2 125914 : 143211 21 uncultured_Caudovirales_phage(20.0%) integrase,transposase attL 141943:141962|attR 143328:143347
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage