CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP016380	Aeromonas hydrophila strain AHNIH1 chromosome, complete genome	12 crisprs	WYL,csa3,DEDDh,cas3,DinG	1	3	7	0
NZ_CP016381	Aeromonas hydrophila strain AHNIH1 plasmid pASP-135, complete sequence	0 crisprs	RT	0	0	2	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP016380_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP016380_1

263558-263653

Orphan

Consensus_repeat	Method
CTGCACACCAAGATCACCCTGACCAATCC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP016380_1

>merge|NZ_CP016380|1|263558-263653|CRISPRCasFinder
CTGCACACCAAGATCACCCTGACCAATCCGGATGATTTAGTTTGGAATTGATAAGCTGATGGAAGTACTGCGCACCAAGATCACCCTGACCAATCC

>NZ_CP016380|1|1|263558-263653|CRISPRCasFinder
CTGCACACCAAGATCACCCTGACCAATCC	GGATGATTTAGTTTGGAATTGATAAGCTGATGGAAGTA
CTGCGCACCAAGATCACCCTGACCAATCC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP016380.1\|WP_016352287.1\|268574_269567_-\|aspartate--ammonia-ligase	unknown	unknown	gnl\|CDD\|235456
NZ_CP016380.1\|WP_065475194.1\|271660_272065_-\|CBS-domain-containing-protein	unknown	unknown	gnl\|CDD\|341392
NZ_CP016380.1\|WP_065475192.1\|270277_271042_-\|transporter-substrate-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|366132
NZ_CP016380.1\|WP_011707736.1\|262560_263541_+\|23S-rRNA-pseudouridine(1911/1915/1917)-synthase-RluD	unknown	unknown	gnl\|CDD\|183020
NZ_CP016380.1\|WP_011707745.1\|250347_251250_-\|AraC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|377694
NZ_CP016380.1\|WP_042064256.1\|256185_256938_+\|transporter-substrate-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|270422
NZ_CP016380.1\|WP_065475181.1\|251396_252560_+\|alcohol-dehydrogenase	unknown	unknown	gnl\|CDD\|185092
NZ_CP016380.1\|WP_011707742.1\|254605_256090_+\|Re/Si-specific-NAD(P)(+)-transhydrogenase-subunit-beta	unknown	unknown	gnl\|CDD\|236520
NZ_CP016380.1\|WP_065475183.1\|257249_258557_+\|serine-dehydratase-subunit-alpha-family-protein	unknown	unknown	gnl\|CDD\|226206
NZ_CP016380.1\|WP_011707743.1\|253067_254594_+\|Re/Si-specific-NAD(P)(+)-transhydrogenase-subunit-alpha	unknown	unknown	gnl\|CDD\|236507
NZ_CP016380.1\|WP_017409782.1\|261687_262443_-\|outer-membrane-protein-assembly-factor-BamD	unknown	unknown	gnl\|CDD\|274513
NZ_CP016380.1\|WP_041216795.1\|271127_271664_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|227700
NZ_CP016380.1\|WP_065475185.1\|258722_260123_+\|L-cystine-transporter	unknown	unknown	gnl\|CDD\|224736
NZ_CP016380.1\|WP_024945187.1\|264906_267480_+\|ATP-dependent-chaperone-ClpB	unknown	unknown	gnl\|CDD\|274529
NZ_CP016380.1\|WP_065475186.1\|260217_261546_+\|CoA-disulfide-reductase	unknown	unknown	gnl\|CDD\|181958
NZ_CP016380.1\|WP_065475190.1\|267540_268365_+\|MBL-fold-metallo-hydrolase	unknown	unknown	gnl\|CDD\|293799
NZ_CP016380.1\|WP_065475196.1\|272185_272890_+\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|180586
NZ_CP016380.1\|WP_065475188.1\|263793_264531_+\|peptidoglycan-editing-factor-PgeF	unknown	unknown	gnl\|CDD\|182677
NZ_CP016380.1\|WP_011707730.1\|269721_270183_+\|transcriptional-regulator-AsnC	unknown	unknown	gnl\|CDD\|183019
NZ_CP016380.1\|WP_065475201.1\|272892_273408_-\|2-amino-4-hydroxy-6--hydroxymethyldihydropteridine-diphosphokinase	unknown	unknown	gnl\|CDD\|376515

Protein	Function_ID	Function_description	E-value
NZ_CP016380.1\|WP_016352287.1\|268574_269567_-\|aspartate--ammonia-ligase	gnl\|CDD\|235456	PRK05425, PRK05425, asparagine synthetase AsnA; Provisional.	0
NZ_CP016380.1\|WP_065475194.1\|271660_272065_-\|CBS-domain-containing-protein	gnl\|CDD\|341392	cd04629, CBS_pair_bac, Two tandem repeats of the cystathionine beta-synthase (CBS pair) domains present in bacteria. The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase).	1.19341e-56
NZ_CP016380.1\|WP_065475192.1\|270277_271042_-\|transporter-substrate-binding-domain-containing-protein	gnl\|CDD\|366132	pfam00497, SBP_bac_3, Bacterial extracellular solute-binding proteins, family 3.	5.42221e-22
NZ_CP016380.1\|WP_011707736.1\|262560_263541_+\|23S-rRNA-pseudouridine(1911/1915/1917)-synthase-RluD	gnl\|CDD\|183020	PRK11180, rluD, 23S rRNA pseudouridine(1911/1915/1917) synthase RluD.	0
NZ_CP016380.1\|WP_011707745.1\|250347_251250_-\|AraC-family-transcriptional-regulator	gnl\|CDD\|377694	pfam06719, AraC_N, AraC-type transcriptional regulator N-terminus. This family represents the N-terminus of bacterial ARAC-type transcriptional regulators. In E. coli, these regulate the L-arabinose operon through sensing the presence of arabinose, and when the sugar is present, transmitting this information from the arabinose-binding domains to the protein's DNA-binding domains. This family might represent the N-terminal arm of the protein, which binds to the C-terminal DNA binding domains to hold them in a state where the protein prefers to loop and remain non-activating. All family members contain the pfam00165 domain.	2.77284e-49
NZ_CP016380.1\|WP_042064256.1\|256185_256938_+\|transporter-substrate-binding-domain-containing-protein	gnl\|CDD\|270422	cd13704, PBP2_HisK, The periplasmic sensor domain of histidine kinase receptors; the type 2 periplasmic binding fold protein. This subfamily includes the periplasmic sensor domain of the histidine kinase receptors (HisK) which are elements of the two-component signal transduction systems commonly found in bacteria and lower eukaryotes. Typically, the two-component system consists of a membrane-spanning histidine kinase sensor and a cytoplasmic response regulator. The two-component systems serve as a stimulus-response coupling mechanism to enable microorganisms to sense and respond to changes in environmental conditions. Extracellular stimuli such as small molecule ligands and ions are detected by the N-terminal periplasmic sensing domain of the sensor kinase receptor, which regulate the catalytic activity of the cytoplasmic kinase domain and promote ATP-dependent autophosphorylation of a conserved histidine residue. The phosphate is then transferred to a conserved aspartate in the response regulator through a phospho-transfer mechanism, and the activity of the response regulator is in turn regulated. The sensor domain belongs to the type 2 periplasmic-binding fold protein (PBP2) superfamily, whose members are involved in chemotaxis and uptake of nutrients and other small molecules from the extracellular space through their function as an initial high-affinity binding component. PBP2 typically comprises of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	1.35847e-21
NZ_CP016380.1\|WP_065475181.1\|251396_252560_+\|alcohol-dehydrogenase	gnl\|CDD\|185092	PRK15138, PRK15138, alcohol dehydrogenase.	0
NZ_CP016380.1\|WP_011707742.1\|254605_256090_+\|Re/Si-specific-NAD(P)(+)-transhydrogenase-subunit-beta	gnl\|CDD\|236520	PRK09444, pntB, Re/Si-specific NAD(P)(+) transhydrogenase subunit beta.	0
NZ_CP016380.1\|WP_065475183.1\|257249_258557_+\|serine-dehydratase-subunit-alpha-family-protein	gnl\|CDD\|226206	COG3681, COG3681, L-cysteine desulfidase [Amino acid transport and metabolism].	2.63628e-136
NZ_CP016380.1\|WP_011707743.1\|253067_254594_+\|Re/Si-specific-NAD(P)(+)-transhydrogenase-subunit-alpha	gnl\|CDD\|236507	PRK09424, pntA, Re/Si-specific NAD(P)(+) transhydrogenase subunit alpha.	0
NZ_CP016380.1\|WP_017409782.1\|261687_262443_-\|outer-membrane-protein-assembly-factor-BamD	gnl\|CDD\|274513	TIGR03302, OM_YfiO, outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). [Protein fate, Protein and peptide secretion and trafficking].	6.5087e-100
NZ_CP016380.1\|WP_041216795.1\|271127_271664_+\|hypothetical-protein	gnl\|CDD\|227700	COG5413, COG5413, Uncharacterized integral membrane protein [Function unknown].	4.24078e-28
NZ_CP016380.1\|WP_065475185.1\|258722_260123_+\|L-cystine-transporter	gnl\|CDD\|224736	COG1823, COG1823, Predicted Na+/dicarboxylate symporter [General function prediction only].	0
NZ_CP016380.1\|WP_024945187.1\|264906_267480_+\|ATP-dependent-chaperone-ClpB	gnl\|CDD\|274529	TIGR03346, chaperone_ClpB, ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins. [Protein fate, Protein folding and stabilization].	0
NZ_CP016380.1\|WP_065475186.1\|260217_261546_+\|CoA-disulfide-reductase	gnl\|CDD\|181958	PRK09564, PRK09564, coenzyme A disulfide reductase; Reviewed.	0
NZ_CP016380.1\|WP_065475190.1\|267540_268365_+\|MBL-fold-metallo-hydrolase	gnl\|CDD\|293799	cd07713, DHPS-like_MBL-fold, Methanocaldococcus jannaschii dihydropteroate synthase, Thermoanaerobacter tengcongensis Tflp, and related proteins; MBL-fold metallo hydrolase domain. This subgroup includes Methanocaldococcus jannaschii 7,8-dihydropterin-6-methyl-4-(beta-D-ribofuranosyl)-aminobenzene-5'-phosphate synthase (EC 2.5.1.15), a folate biosynthetic enzyme also known as dihydropteroate synthase and 7,8 dihydropteroate synthase. Thermoanaerobacter tengcongensis Tflp is a ferredoxin-like member. Members of this subgroup belong to the MBL-fold metallo-hydrolase superfamily which is comprised mainly of hydrolytic enzymes which carry out a variety of biological functions.	3.51823e-78
NZ_CP016380.1\|WP_065475196.1\|272185_272890_+\|SDR-family-oxidoreductase	gnl\|CDD\|180586	PRK06483, PRK06483, dihydromonapterin reductase; Provisional.	4.56651e-71
NZ_CP016380.1\|WP_065475188.1\|263793_264531_+\|peptidoglycan-editing-factor-PgeF	gnl\|CDD\|182677	PRK10723, PRK10723, polyphenol oxidase.	3.31443e-122
NZ_CP016380.1\|WP_011707730.1\|269721_270183_+\|transcriptional-regulator-AsnC	gnl\|CDD\|183019	PRK11179, PRK11179, DNA-binding transcriptional regulator AsnC; Provisional.	1.36867e-111
NZ_CP016380.1\|WP_065475201.1\|272892_273408_-\|2-amino-4-hydroxy-6--hydroxymethyldihydropteridine-diphosphokinase	gnl\|CDD\|376515	pfam01288, HPPK, 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK).	6.93608e-23

>NZ_CP016380.1|WP_011707736.1|262560_263541_+|23S-rRNA-pseudouridine(1911/1915/1917)-synthase-RluD
MSQHIELTGEFQDHQFGQRLDQALAELFPDYSRTRIKEWILQDRVTLDGQVANTPREKVLAGQKVHVDVELADDTRWDAQNIELNIVYEDEHILVIDKPAGLVVHPGAGTPDGTILNALLHRYPAIAEVPRAGIVHRLDKDTTGLMVVAKTIPAQTHLVEALQARQITREYEAIAIGHMTAGGTVDAPIGRHPTQRTHMAVVPNGRESVTHYRVHEKFRGHTRLRLRLETGRTHQIRVHMAHIKHPLVGDPAYGGRLRLLRNATPELTEALRGFHRQALHATMLKLAHPITGEVMEWHSPTPQDMLDLMEVLRADTLANPDDLVWN
>NZ_CP016380.1|WP_017409782.1|261687_262443_-|outer-membrane-protein-assembly-factor-BamD
MGKKSHLLMSLALVATLITGCSSTKPKVPDEPPETLYQKARLKLDAGNYLNAIELLEALDSRYPFGAYSNQVQLDLIYAYYKQDDTAQAIANIDRFIRLNPAHKNIDYVFYMRGLTNMAGDYNFFQDFLGINRDDKDPSYARQAFQDFKTLLQNYPNSVYAADARARMIGLKNRLARYDLSVAEYYVKRDALIAAANRAKLIVETYPDTAETEKALEIMINSYDSLKMPTLAQHAREVLAKNYPDNRLGRG
>NZ_CP016380.1|WP_065475186.1|260217_261546_+|CoA-disulfide-reductase
MRIVIIGGEAAGMSAAAKARRLAKEAEIVVYEASEVISFGACGLPYFVGDEFQEPGYMAEFTPEQFAAKGIEVKTGHRVLGLDATAQTLTVEHKGDIFTDRYDRLMIATGAREVMPPIPGLQQEGVFGLRRMADGLALKAAVQDKANTRALVIGSGFIGLEVVEALVHQGKEVRLIELAERVIPDAFDGEITQHIETELREQGVSLHLGERVEALLGEGRVTGVRTSHGEYEADIVVVCTGVKPNTEFLADTGIERLGNGAIKVDRQGRSSLANVWSAGDCASVWHAVKQQQVYVPLATIANKLGRMVGENLAGAEQEFPGTLGSAALKVLGLEAGRTGLSEQEAKAMGIDYRTVVIKDKCHTNYCPGQSDIHVKLVYEAGSKRLLGGQILGRKGAVHRIDALAVAITMGVTTEQLGMLDFAYAPPFSRTWDVLNVAGNVAK
>NZ_CP016380.1|WP_065475185.1|258722_260123_+|L-cystine-transporter
MTLSVIGNLAILVMLLLFLYRLQQTHVSFTRRVFSGLGLGILFGAALQLLYGAGSDVLVQTGDYLDIVGSGYVKLLQMIITPLIMVSIIGAILKLNGGTALGKISAMTIGVLIFTTMIAAGAGILMSNLFGLTAEGLTAGAAETARGAALQTTLGSVESMSFAKMVLEFIPANPFLDMTGARKTSTIAVVIFSIFIGLSATGIARKKPEIFASFGHFMQVAHVIVMRMVTLVLRLTPYGVLALMTKVVSGSNYADIINLLNFVLASYGAIAIMFAVHLLLVALVGINPARFLKKIMPVLAFAFTSRTSAGSIPMNVQTQTKALGIPEGIANFAASFGSTIGQNGCAGIYPAMLAVMIAPTVGVNPMDPGFIMTLIAIITVSSFGVAGIGGGATFAALIVLSALDFPVALAGLLISIEPLIDMGRTALNVSGSITAGTVTSRLLGETDMAVFNSEHEVCLDGEESTI
>NZ_CP016380.1|WP_065475183.1|257249_258557_+|serine-dehydratase-subunit-alpha-family-protein
MRHIAMKAQWTDFITLLKREVVPALGCTEPMSVALAAANCRKLLGQVPTRVSVWVSGNLFKNGMGVGVPGTGMIGLPVAAAVGITGGNPDAGLEVLKALTSAQVEEAKSLLPAIKVDVKDVPDVLYAEVLAQVEGHSARVVICTDHTRIILMERDGEVLMAQDSAPGVQIQAAPSSKPAMTLREIVEFALQVPLAEIDFIREAATMNQALADEGLQGYGLRIGKILTEQVERKLLSDDLMTLAMRLSSAASDARMDGAMLPAMSNSGSGNQGIAATMPVVAAAHFLQASDEQLTRALVMSHLVAIYIKTYQNKLSALCAASTAAMGAGAAITWLLGGQFEQISHCINNMIGDVSGIICDGAGSACSMKVSTSTSAAVKSSLMAINNLHVPQSEGIVSDDVDQTIANLGRLSKQGMLDTDIEIINIMRAKQQGKAE
>NZ_CP016380.1|WP_042064256.1|256185_256938_+|transporter-substrate-binding-domain-containing-protein
MVWRKGWILLCLWWGWAAQASEPPTLTLLTELWPPYVMRLDDGSLGGADLELARTVLKRMGYQTTVKVLPWKRVLQEARLQRGDAIVDAFFEERRLEWLHYPDEPLSQSGEVLFFPLARPVDFQGLASLKGLRIGTQTDYAYGEEFLTSALFTRVAMTGESNMIKQLHLMMAGRLDGVVMNQMVGRYLLKGQGLQDQVGHSEKRVSESNRNFLAFTHRPGNERLAYQFSLALKAFKQTPEYQSLLTRYGL
>NZ_CP016380.1|WP_011707742.1|254605_256090_+|Re/Si-specific-NAD(P)(+)-transhydrogenase-subunit-beta
MSQGLVTASYIVAAVLFILSLAGLSKQETAKHGNLFGIAGMAIALLATVFNPETSGVHWIILAMVIGGAIGVRLALKVEMTEMPELVAVLHSFVGMAAVLVGFNSFIDLHPSAPAEVVVSVGSNLDATLAAARAAFEQAASVAQVEHLSGAMLNIHLVEIFLGVFIGAVTFTGSVVAFGKLRGLISSKPLMLPHRHKLNLLAVVASLALMVYFVNAGGSTFALLVMTLIAFAFGWHLVASIGGADMPVVVSMLNSYSGWAAAAAGFMLSNDLLIVVGALVGSSGAILSYIMCKAMNRSFISVIAGGFGSDGVASTADQEMGEYRETSAEDVADLLKNSSSVIITPGYGMAVAQAQYPVAEITQKLRDRGVKVRFGIHPVAGRLPGHMNVLLAEAKVPYDIVLEMDEINEDFSDTDTVLVIGANDTVNPAAMEDPGSPIAGMPVLEVWKAQNVIGFKRSMNTGYAGVQNPLFFKENTQMLFGDAKASVEAILKAL
>NZ_CP016380.1|WP_011707743.1|253067_254594_+|Re/Si-specific-NAD(P)(+)-transhydrogenase-subunit-alpha
MQIGIPRESLAGETRVAATPATVEQLKKLGFEVAIEAGAGLLASFDDAAFEAAGASVVPSVWQADLIFKVNAPTDAEIAQIKDGATLVSFIWPAQNPELVKKLSARNINVMAMDMVPRISRAQSLDALSSMANIGGYRAVVEAAHQFGRFFTGQITAAGKVPPAKVLVIGAGVAGLAAIGTAGSLGAIVRAFDTRLEVAEQIESMGGEFLKLDFGGEDGSSSDGYAKVMSEEFIAAEMALFAQQAKEVDIIITTALIPGKPAPKLITKEMVDSMKPGSVIVDMAAQAGGNCEYTVPGELHVTGNGVKVIGYTDLPGRLPAQSSQLYGTNLVNLMKLMCKEKDGNVAINFEDVVQRNMTVIQAGEVTFPPPAISVSAAPQKPAAAKPAAKKEAAKPSNKKFVFGALGIAAFGWVAAVAPAAFLSHFTVFILACVVGYYVVWNVSHALHTPLMSVTNAISGIIVVGALLQIGQGSTLVTALAFVAVLIASINIFGGFTVTQRMLKMFRKD
>NZ_CP016380.1|WP_065475181.1|251396_252560_+|alcohol-dehydrogenase
MNNFTLHTPTKILFGNGQVAQLREQLPRDARILITYGGGSVVRSGLLTQIRSELAGMTLFEFGGIEPNPTYETLMGAVELARAERVDFLLAVGGGSVLDGTKFIAAAAHYDPARDPWHILETVGNEVRSAIPLGAVLTLPATGSEMNMGAVVTRRSSGDKVHFFSPFVMPRFAVLDPVLTYTLPARQVANGVVDAFIHILEQYLTYPVNAKVQDRFAEGLLLTLLEEGPKALVEPENYEVRANIMWSATLALNGLIGAGVPQDWATHMLGHEITALHGLDHAQTLAVVLPALLQAKRQQKHAKLLQYAERVWDLRSGSEAERIDGAIAATRDFFERMGVKTRLRDYGVADAGIDTLLGKLAEHGMTAIGEHGDIDLVQSQHIYEAAW
>NZ_CP016380.1|WP_011707745.1|250347_251250_-|AraC-family-transcriptional-regulator
MQTRYTDLAAKLARHVTAPGITPSPVDQVSLIYTTEYHGRTPVLYQPRMIVILQGHKVGYLADQVFRYDPNHYLLMTLPLPCECECFASPEQPLIGFSLEINLVTLQELLLELGDALPAPTPQKSGVHSVPLSEAMFCAAERLIDLMDKPHHARVLGPQTVREMLFYALHEGGGPALQALANRHNHVGQIARVLRMIESRYADNLTMEELAREVNMSVSAFHHHFKAVTATSPLQYIKSFRLHKARMMMLHDGIKAGTAATRVGYESNSQFSREYKRFFGSTPTDQASRFREGQLRIIEG
>NZ_CP016380.1|WP_065475188.1|263793_264531_+|peptidoglycan-editing-factor-PgeF
MKWIEPDWPAPAKVSALSTTRDGGISEGVFAGLNLGAHVGDEPAQVEANRTRLQQAAGIPGTLNWLNQVHGTAVHPVSRDYGCAPDADAACAREAGQACIVMTADCLPVLFCDRAGTVVAAAHAGWRGLQGGVLEASIAAMGCEPGEILAWLGPAIGPTAFEVGGEVREAFMAEQAEAATAFVPSPNEGKWLADIYQLARQRLARAGVTAVYGGEHCTFSDSEQFYSYRRNGQTGRMASIIWLAE
>NZ_CP016380.1|WP_024945187.1|264906_267480_+|ATP-dependent-chaperone-ClpB
MRLDRLTSKFQIAISDAQSLALGRDHQFIEPVHLMTALVNQDGGSIRPLLTLTGMDINSLRSRLGEELDRLPRVSGVEGDVQLSNGLGRLLNVCDKLAQQRKDQFISSELFVLAALDEKGTLGELLRAQGLTKEKLEAAIDKVRGGKKVEDANAEENRQALEKYTIDLTERAEIGKLDPVIGRDDEIRRTIQVLQRRTKNNPVLIGAPGVGKTAIVEGLAQRIINGEVPEGLKNKRVLSLDMGALVAGAKYRGEFEERLKAVLNDLAKEEGNVILFIDELHTMVGAGKGEGAMDAGNMLKPALARGDLHCVGATTLDEYRQYIEKDAALERRFQKVLVEEPSVEDTIAILRGLKERYELHHHVQITDPAIVAAAQLSHRYIADRQLPDKAIDLIDEAAASIRLQIDSKPESLDRLERRIIQLKLEQQALMKEDDDASRKRLELINQEISEKDREYNELDEVWKAEKAALAGTQHIKAALEQARQDLDVARRAGDLGRMSELQYGRIPELEKQLDLATQAEMQETSLLRNRVTDVEIADVLARWTGIPVARMLEGERDKLLRMEDQLHSRVIGQEEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALAEFLFDTQDAMVRIDMSEFMEKHSVARLVGAPPGYVGYEEGGYLTEAVRRRPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNSVVIMTSNLGSDLIQEHHSEKDYDEMKGMLMEVLTRSFRPEFINRIDETVVFHPLGEEHIKSIARIQLKSLMGRLEAQGYEVEVSEALLEKLVHAGFDPVYGARPLKRAIQHKVENPLAQALLSGRIVPGKKLVLGADSNGLTMTQ
>NZ_CP016380.1|WP_065475190.1|267540_268365_+|MBL-fold-metallo-hydrolase
MLKFSVLVDDDVHLPGCLPERGLALLLECDGLRVLFDSGRGRALCHNAAVMGVDLASLTHVVLSHGHYDHVGGVGSLPVYPRSIPLIACPDVFCERGYFLSLPFWRRNLYRLSGALARESLPARGLLPHCSAEPVWLSDRLVFLGSIVRRDRAAPSLLGYIVRGGRVEKDLISDDSALAYKSEQGLIVFIGCGHAGVENIIERAKEVCGDERIHAVIGGLHLKFSGPQRAVALGAYLREEAVDQLFACHCTGSRKAGLPRQRQIGAGFEHSFSA
>NZ_CP016380.1|WP_016352287.1|268574_269567_-|aspartate--ammonia-ligase
MKQHYIRSQQQISFVKEMFSRQLAQQLGLMEVQAPILSRVGDGTQDNLSGHENAVQVKVKTLPEHSYEVVHSLAKWKRQTLGRFGFGPGEGIYTHMKALRPDEDRLTPIHSVYVDQWDWEKVMPSERRDLAYLQETVRGIWAAIKATERAVCAEHELTPFLPAEIQFLHSEELLTRYPDLDAKGRERAIAKELGAVFLIGIGGALSHGERHDVRAPDYDDWSSHSELGLAGLNGDILVWNPVLQDSFEISSMGIRVDAEALRRQLAITGDEDRLQYDWHQDLLAARMPQTIGGGIGQSRLAMLLLQKEHIGQVQVGVWPAEMKAAVQGML
>NZ_CP016380.1|WP_011707730.1|269721_270183_+|transcriptional-regulator-AsnC
MPENYRIDNLDQAILTALMENARIPYAELAKQLLVSPGTIHVRVEKMKQAGIIEGTRVQVNPKKLGYDVCCFIGINLKSAKDYPSALAKLQALDEVVEAYYTTGHYSIFMKVMTRSIDELQTVLIHKIQTIDEIQSTETLISLQNPILRDVKP
>NZ_CP016380.1|WP_065475192.1|270277_271042_-|transporter-substrate-binding-domain-containing-protein
MRRFILLCLLFPLWLQAKELIIGGTLEPPLKFLDAQGVPHGLDVDVVSTIFGKLRIPIRIELTDSGARLTRNAETGVYDLVMTHSYKPERERYLLYPQQAHLRHSWHFFVRKADLLKIRYDTLADLKPWRIGITKDFSYTPELTAALADPAYHFQEIPINQLQLRKLIAGRIDMVPMPLVTAFAQIKEEGLEGKLDYLPKPLKASPYYTVWTKARADATTPALMAAYDAELLRMKRDGRLKAIYDHYGIPYIEP
>NZ_CP016380.1|WP_041216795.1|271127_271664_+|hypothetical-protein
MANPEIESELDGIDRVSVCLYRLGLSLAALLLLCRGASLLLGQDFLAPASWLVALAVASGVCGLCLHVYDKRIRFVLQGLGWGALLLSASGAPDVLVLGAALATLAGLAFKEQFCFAIPGIRAVPLLLPLLWLLELAGIGWAAALVALVCGLLLCLLSLAKWRMPLHFDIGDKGRYQI
>NZ_CP016380.1|WP_065475194.1|271660_272065_-|CBS-domain-containing-protein
MLQIRDHMSRSTHSLTPQLGLAEALDRLHSSGLSGLPVLDPQQRLIGFLSEQDCIPSLLTSSYHCDTRTRVEDLMSRTPLSVSPDDSILDLARQMTEARPKVYPVLEGNRVVGIISRRQVMQALNAQMKGCLPT
>NZ_CP016380.1|WP_065475196.1|272185_272890_+|SDR-family-oxidoreductase
MRALVTGCGRRLGFYLCEQLVAAGWQVTGSYRSERPELARLRALGGELVQADFAREEEVGKLIEALAVHQDLALVIHNASAFEPQAVDLAAQLAQFEQFYRVHMAAPFQLNRALAPQLARNANAGIIHITDIYIHAPAPQFASYVATKAGAHSLAMSFARELAPAVRVNTIEPGPILFLDEHGDAWRQQVLAKTPLAREGGLAPIWQAVQLLMQNDYMTGASIRVDGGRGLAVI
>NZ_CP016380.1|WP_065475201.1|272892_273408_-|2-amino-4-hydroxy-6--hydroxymethyldihydropteridine-diphosphokinase
MFYLCSIGSNLDPHQHVSQAVGELLVHFGRLQLSSVIQTKPVGMHSSHDFLNCLFVAESELAPHQLKAHFVAMELAHGRDRSDPRCKVLDRTLDIDILASSQSDDFSTARVDAYLDELLAELYGRGQVHDRKVTLPLHTRLMAGKVIEERQVGLAPIALQQEMATPAALLR

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Crispr_ID: NZ_CP016380_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP016380_2

543405-543480

Orphan

Consensus_repeat	Method
GTTGGAGCCCAGGCTGATATAGA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP016380_2

>merge|NZ_CP016380|2|543405-543480|CRISPRCasFinder
GTTGGAGCCCAGGCTGATATAGACACGAGTCATGCGGTGCTCCCTGTCATCTGGTTGGAACCCAGGCTGATATAGA

>NZ_CP016380|2|2|543405-543480|CRISPRCasFinder
GTTGGAGCCCAGGCTGATATAGA	CACGAGTCATGCGGTGCTCCCTGTCATCTG
GTTGGAACCCAGGCTGATATAGA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP016380.1\|WP_065475394.1\|536606_537515_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|182990
NZ_CP016380.1\|WP_041216960.1\|528182_530090_-\|methyl-accepting-chemotaxis-protein	unknown	unknown	gnl\|CDD\|223910
NZ_CP016380.1\|WP_065475403.1\|548719_549127_+\|DUF1795-domain-containing-protein	unknown	unknown	gnl\|CDD\|370123
NZ_CP016380.1\|WP_065480444.1\|546856_548710_+\|type-VI-secretion-system-tip-protein-VgrG	unknown	unknown	gnl\|CDD\|274542
NZ_CP016380.1\|WP_065475396.1\|537591_538209_+\|LysE-family-transporter	unknown	unknown	gnl\|CDD\|273358
NZ_CP016380.1\|WP_010634822.1\|546012_546531_+\|type-VI-secretion-system-effector-Hcp1	unknown	unknown	gnl\|CDD\|213799
NZ_CP016380.1\|WP_065475397.1\|538332_539727_+\|FAD-binding-protein	unknown	unknown	gnl\|CDD\|281959
NZ_CP016380.1\|WP_065475407.1\|557785_558301_+\|ClbS/DfsB-family-four-helix-bundle-protein	unknown	unknown	gnl\|CDD\|377957
NZ_CP016380.1\|WP_065475409.1\|558645_559818_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|274333
NZ_CP016380.1\|WP_065475392.1\|532814_535412_+\|bifunctional-aconitate-hydratase-2/2-methylisocitrate-dehydratase	unknown	unknown	gnl\|CDD\|236424
NZ_CP016380.1\|WP_065475401.1\|542323_542806_-\|YbaK/EbsC-family-protein	unknown	unknown	gnl\|CDD\|239824
NZ_CP016380.1\|WP_065475406.1\|557340_557673_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP016380.1\|WP_011707547.1\|543489_543861_-\|dihydroneopterin-aldolase	unknown	unknown	gnl\|CDD\|214902
NZ_CP016380.1\|WP_065475399.1\|539736_540864_+\|GTP-binding-protein	unknown	unknown	gnl\|CDD\|223597
NZ_CP016380.1\|WP_011707550.1\|540925_542314_+\|multidrug-transporter-subunit-MdtD	unknown	unknown	gnl\|CDD\|182502
NZ_CP016380.1\|WP_024944784.1\|555969_557313_+\|two-pore-domain-potassium-channel-family-protein	unknown	unknown	gnl\|CDD\|369572
NZ_CP016380.1\|WP_065475389.1\|530327_532586_+\|patatin-like-phospholipase-domain-containing-protein	unknown	unknown	gnl\|CDD\|132844
NZ_CP016380.1\|WP_065475368.1\|535480_536443_-\|IS1595-family-transposase	unknown	unknown	gnl\|CDD\|372298
NZ_CP016380.1\|WP_016352149.1\|544037_544700_+\|glycerol-3-phosphate-1-O-acyltransferase-PlsY	unknown	unknown	gnl\|CDD\|234691
NZ_CP016380.1\|WP_081304458.1\|553594_554038_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP016380.1\|WP_065475394.1\|536606_537515_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|182990	PRK11139, PRK11139, DNA-binding transcriptional activator GcvA; Provisional.	7.34595e-72
NZ_CP016380.1\|WP_041216960.1\|528182_530090_-\|methyl-accepting-chemotaxis-protein	gnl\|CDD\|223910	COG0840, Tar, Methyl-accepting chemotaxis protein [Cell motility and secretion / Signal transduction mechanisms].	4.89621e-77
NZ_CP016380.1\|WP_065475403.1\|548719_549127_+\|DUF1795-domain-containing-protein	gnl\|CDD\|370123	pfam08786, DcrB, DcrB. DcrB is a bacterial protein required for phages C1 and C6 adsorption. It may be involved in the opening or formation of diffusion channels in the outer membrane. Structurally, it consist of an antiparallel beta sheet with some alpha helical regions.	1.63872e-36
NZ_CP016380.1\|WP_065480444.1\|546856_548710_+\|type-VI-secretion-system-tip-protein-VgrG	gnl\|CDD\|274542	TIGR03361, VI_Rhs_Vgr, type VI secretion system Vgr family protein. Members of this protein family belong to the Rhs element Vgr protein family (see TIGR01646), but furthermore all are found in genomes with type VI secretion loci. However, members of this protein family, although recognizably correlated to type VI secretion according the partial phylogenetic profiling algorithm, are often found far the type VI secretion locus.	0
NZ_CP016380.1\|WP_065475396.1\|537591_538209_+\|LysE-family-transporter	gnl\|CDD\|273358	TIGR00949, Uncharacterized_membrane_protein_YahN, The Resistance to Homoserine/Threonine (RhtB) Family protein. [Transport and binding proteins, Amino acids, peptides and amines].	1.17462e-42
NZ_CP016380.1\|WP_010634822.1\|546012_546531_+\|type-VI-secretion-system-effector-Hcp1	gnl\|CDD\|213799	TIGR03344, VI_effect_Hcp1, type VI secretion system effector, Hcp1 family. This family includes Hcp1 (hemolysin coregulated protein 1), an exported, homohexameric ring-forming virulence protein from Pseudomonas aeruginosa. Hcp1 lacks a conventional signal sequence and is instead exported by means of the type VI secretion system, encoded by a pathogenicity cluster of a class previously designated IAHP (IcmF-associated homologous protein). Homologs of Hcp1, in this protein family, are found in various bacteria of which most but not all are known pathogens. Pathogens may have many multiple members of this family, with three to ten in Erwinia carotovora, Yersinia pestis, uropathogenic Escherichia coli, and the insect pathogen Photorhabdus luminescens. [Cellular processes, Pathogenesis].	1.04311e-84
NZ_CP016380.1\|WP_065475397.1\|538332_539727_+\|FAD-binding-protein	gnl\|CDD\|281959	pfam04030, ALO, D-arabinono-1,4-lactone oxidase. This domain is specific to D-arabinono-1,4-lactone oxidase EC:1.1.3.-, which is involved in the final step of the D-erythroascorbic acid biosynthesis pathway.	3.33061e-45
NZ_CP016380.1\|WP_065475407.1\|557785_558301_+\|ClbS/DfsB-family-four-helix-bundle-protein	gnl\|CDD\|377957	pfam08020, DUF1706, Protein of unknown function (DUF1706). This family contains many hypothetical proteins from bacteria and yeast.	2.49527e-68
NZ_CP016380.1\|WP_065475409.1\|558645_559818_+\|hypothetical-protein	gnl\|CDD\|274333	TIGR02871, conserved_hypothetical_protein, sporulation integral membrane protein YlbJ. Members of this protein family are found exclusively in Firmicutes (low-GC Gram-positive bacterial) and are known from studies in Bacillus subtilis to be part of the sigma-E regulon. Mutation leads to a sporulation defect, confirming that members of this protein family, YlbJ, are sporulation proteins. This protein appears to be universal among endospore-forming bacteria, but is encoded by a pair ORFs distant from eash other in Symbiobacterium thermophilum IAM14863. [Cellular processes, Sporulation and germination].	0.000205557
NZ_CP016380.1\|WP_065475392.1\|532814_535412_+\|bifunctional-aconitate-hydratase-2/2-methylisocitrate-dehydratase	gnl\|CDD\|236424	PRK09238, PRK09238, bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase; Validated.	0
NZ_CP016380.1\|WP_065475401.1\|542323_542806_-\|YbaK/EbsC-family-protein	gnl\|CDD\|239824	cd04332, YbaK_like, YbaK-like. The YbaK family of deacylase domains includes the INS amino acid-editing domain of the bacterial class II prolyl tRNA synthetase (ProRS), and it's trans-acting homologs, YbaK, ProX, and PrdX. The primary function of INS is to hydrolyze mischarged cysteinyl-tRNA(Pro)'s, thus helping ensure the fidelity of translation. Organisms whose ProRS lacks the INS domain express an INS homolog in trans (e.g. YbaK, ProX, or PrdX).	1.09196e-27
NZ_CP016380.1\|WP_011707547.1\|543489_543861_-\|dihydroneopterin-aldolase	gnl\|CDD\|214902	smart00905, FolB, Dihydroneopterin aldolase. Dihydroneopterin aldolase catalyses the conversion of 7,8-dihydroneopterin to 6-hydroxymethyl-7,8-dihydropterin in the biosynthetic pathway of tetrahydrofolate. In the opportunistic pathogen Pneumocystis carinii, dihydroneopterin aldolase function is expressed as the N-terminal portion of the multifunctional folic acid synthesis protein (Fas). This region encompasses two domains, FasA and FasB, which are 27% amino acid identical. FasA and FasB also share significant amino acid sequence similarity with bacterial dihydroneopterin aldolases. This region consists of two tandem sequences each homologous to folB and which form tetramers.	2.81322e-41
NZ_CP016380.1\|WP_065475399.1\|539736_540864_+\|GTP-binding-protein	gnl\|CDD\|223597	COG0523, COG0523, Putative GTPases (G3E family) [General function prediction only].	9.11293e-91
NZ_CP016380.1\|WP_011707550.1\|540925_542314_+\|multidrug-transporter-subunit-MdtD	gnl\|CDD\|182502	PRK10504, PRK10504, putative transporter; Provisional.	5.60057e-158
NZ_CP016380.1\|WP_024944784.1\|555969_557313_+\|two-pore-domain-potassium-channel-family-protein	gnl\|CDD\|369572	pfam07885, Ion_trans_2, Ion channel. This family includes the two membrane helix type ion channels found in bacteria.	1.38645e-07
NZ_CP016380.1\|WP_065475389.1\|530327_532586_+\|patatin-like-phospholipase-domain-containing-protein	gnl\|CDD\|132844	cd07205, Pat_PNPLA6_PNPLA7_NTE1_like, Patatin-like phospholipase domain containing protein 6, protein 7, and fungal NTE1. Patatin-like phospholipase domain containing protein 6 (PNPLA6) and protein 7 (PNPLA7) are included in this family. PNPLA6 is commonly known as Neuropathy Target Esterase (NTE). NTE has at least two functional domains: the N-terminal domain putatively regulatory domain and the C-terminal catalytic domain which shows esterase activity. NTE shows phospholipase activity for lysophosphatidylcholine (LPC) and phosphatidylcholine (PC). Exposure of NTE to organophosphates leads to organophosphate-induced delayed neurotoxicity (OPIDN). OPIDN is a progressive neurological condition that is characterized by weakness, paralysis, pain, and paresthesia. PNPLA7 is an insulin-regulated phospholipase that is homologus to Neuropathy Target Esterase (NTE or PNPLA6) and is also known as NTE-related esterase (NRE). Human NRE is predominantly expressed in prostate, white adipose, and pancreatic tissue. NRE hydrolyzes sn-1 esters in lysophosphatidylcholine and lysophosphatidic acid, but shows no lipase activity with substrates like triacylglycerols (TG), cholesteryl esters, retinyl esters (RE), phosphatidylcholine (PC), or monoacylglycerol (MG). This family includes subfamily of PNPLA6 (NTE) and PNPLA7 (NRE)-like phospholipases.	1.57949e-59
NZ_CP016380.1\|WP_065475368.1\|535480_536443_-\|IS1595-family-transposase	gnl\|CDD\|372298	pfam12762, DDE_Tnp_IS1595, ISXO2-like transposase domain. This domain probably functions as an integrase that is found in a wide variety of transposases, including ISXO2.	1.36177e-12
NZ_CP016380.1\|WP_016352149.1\|544037_544700_+\|glycerol-3-phosphate-1-O-acyltransferase-PlsY	gnl\|CDD\|234691	PRK00220, PRK00220, glycerol-3-phosphate 1-O-acyltransferase PlsY.	1.06077e-96

>NZ_CP016380.1|WP_065475401.1|542323_542806_-|YbaK/EbsC-family-protein
MPLDTIHDFNCRLLTGLPHQRFEHEPILDYATDEKVRARLGWQAEFSKTLFLKFKDGRFALLLTHRDGRLDNKAVKAALGAKPSICTADEMQAEIGCLPGAVCPFLPRADIPLLVDPVLMTHHAFTWTPGHPEQTFLLETAHLAGLLTQLPCQVSYLPAP
>NZ_CP016380.1|WP_011707550.1|540925_542314_+|multidrug-transporter-subunit-MdtD
MPDSTHMVTPAQRKWLPPLTAVGFFMQTLDGTILNTALPSMAETLGESPLQMQSVIIAYMLTVALLIPASGWLADRFGTRRIYLAAILLFTLGSLACAAANSLPLLVAARVLQGIGGALLMPVGRLAVLRVYSKHELLRVMSFVTIPGLVGPLIGPALGGWLVEVASWHWVFLINLPVGLLGFIASWYFMPDLRQSTAKFDWQGFVMFSAGMVLVSVGLQGLGEHSISTGWALFALLFGLAAMASYWLYAANAEEPLFGLGLFKTSTFAIGIWGNLFARLGSGAMPFLTPLFLQLGLGFSPSKAGMTMIPTVLGAMLTKTLVNKLIPRIGYRRILIGNTLALGVMIASFSLIDNQLPYGVLLGWLMVFGAINSLQFSAMNTLTLQDLSPEFASSGNGLLSVVMQLSMSLGVAIAASLLGLFSAGSAAADGQWLGGFHLTYLCIGLMSMLAALIFAQLARDKR
>NZ_CP016380.1|WP_065475399.1|539736_540864_+|GTP-binding-protein
MTDMQDTRIPVTLLTGFLGSGKTTLLNHWVKQPELGECAVLINEFGSVGLDHHLVQQVDEQVVLLDSGCICCSVQGSLVEALQGLFMKAIQRKIKPFKRLIIETTGLADPAPVLFTLREEGFIAQRYRFDGTVTVVDAGHIEQQLAVQYEAVKQVALADLLVVSKGDLVDGEQLERVEAQLAVLNPAAPIERVSNGELSPAVLEKLGAYNEAAGRDVRQLLAWLRTEAPKQGLASPMQPKMKPFAAKVGTAAPTHFEHGNIESFALRIGEPLKPSRLLAAIDAVQAQYGDALLRLKGILQLEGESQPVVIHGVHGQLYPLQALGEWPEGKAQSRLVFIVKSQDKAGIERLFLDTLKAPEPSLEEQLRAMLGQPDA
>NZ_CP016380.1|WP_065475397.1|538332_539727_+|FAD-binding-protein
MTVRFQAFHSIKAIGQREVLFNWSRTNPLGALEQVWRPKNRDELQQLLRENPERKLRLIGSGLSFEPIHSVYAEGSQALLVDLHHLRGQLAQTADTVTYQAGTPLDTVYADLIAMERMLPASPGVIGIQTLGGALSTGTHGQGLHQSALCDAVAAMTVMLASGDIIRVDRSDPRFGAFVMGMGMLGILLDVTLQTVPNRIMRCTKFTTDYPFLLAHNERLNREHAFVKSWWFAWTGESHIWLVDPASEEEVARYRAGGSEPLLLEGDIDARMNATIDATLQKMAKDTKDEALAGEHFETVRRFKDASDLVGNVYQILCKGIPAPQINCEVAVPLHRMNEALETLQAWQKANPGVLHYPFILRCTGPSKAWLSAAYDQSVCWIGFLVYLAADGTFVNGSMEQMRELQQLLVPLGGIPHFGKHLAMDLYDFPALLPRWHDFLALKGELDPHGRFENRWLADLFANR
>NZ_CP016380.1|WP_065475396.1|537591_538209_+|LysE-family-transporter
MTELLAVVAITFFAVISPGPDFAMVSRNSLLLSRRSGVLTALGIGAGVCVHVTYTLFGVGLLIQQSLWLFNLIKLAGAAYLIFLGIKMLRAKPMTAEVLAEHPALSSLGALRTGFLTNVLNPKTTIFIVSLFMQVVQPQTPLAVQLGYGAFIVLAHAVWFSAVAIFFSTDSVRGRLLAVRHWIDRVFGGLLVGFGMLLALTQQTR
>NZ_CP016380.1|WP_065475394.1|536606_537515_-|LysR-family-transcriptional-regulator
MNGENDSQKSLSLPALTALRCFEVAARTEHFSRAADELHLTHGAVSRAVRLLEEDLGVMLFERRQRRVFLTEAGERLYQAVREGLGGIRQTAQALRRQGRPSSLVISCEPTLLMRWLIPRWPAFQALHPELDVHLMAGGGALSFGSGIDLAIRRNDFQWPAELYSQPLFEELTGPVCQPGKVAQFFETGANSPALRPAAPRLHTKTRPGAWQEWLQHADQSAGEEAPGQTFEHFYFSLQAAVAGLGVAIGPYRQVCDDIEAGLLVAPLGFCPDGTGYHLLAPAPPAPGSAHARLAEWLQSLT
>NZ_CP016380.1|WP_065475368.1|535480_536443_-|IS1595-family-transposase
MDTQAFQHLLSLFPSLTSRQRRLAQHELTTPHPITSLATQLPVCQCCPHCQAEATQLAPWGWSRGLRRYRCKQCLRTSSVLTNTPLARLRKPQCWEDYAQALIDGLTVRQAALRSGVGKNTAFLWRHRFLKAMASHQAVREEGIVEVDETFFLESFKGQRGLPRPARHRGGKGRTRGTGPDYIPVMVVQDRAGHLADFQLEQLNARAVKAVLEPLIAPDAVLCSDGAGVYASFSKLQGMTHQVVHNRAGERVVGAYHIQHVNGYHRRLKEWMERFHGVATHYLRNYLGWRRMLERYGGEVNISRCLHEALGHPMQHVIGT
>NZ_CP016380.1|WP_065475392.1|532814_535412_+|bifunctional-aconitate-hydratase-2/2-methylisocitrate-dehydratase
MLETYRKHVAERAAEGVVAKPLDAEQVAALVELLKNPPAGEQDFLKELLSSRIPPGVDEAAYVKAGFLTAVAKGEAHSPILSAAEAVELLGTMQGGYNIQPLIDLLDDATLAPLAAKGLSHTLLMFDSFHDVEEKAKAGNAHAKQVMQSWADAEWFLSRPELAEKITVTVFKVTGETNTDDLSPAPDAWSRPDIPLHALAMLKNARPGITPDKDGVIGPIKTIDALKEKGFPLAYVGDVVGTGSSRKSATNSVLWFMGDDIPHVPNKRAGGVCLGGKIAPIFFNTMEDAGALPIEVDVSKLEMGDVIDIYPFAGKICKHGTEQVLAQFELKTDVLIDEVRAGGRIPLIIGRGLTDKAREALGLPFSTVFRRPQPVADTGKGFTLAQKMVGKACGVKGIRPGTYCEPKMTTVGSQDTTGPMTRDELKDLACLGFSADLTMQSFCHTAAYPKPIDVQTHHTLPDFIMNRGGVSLRPGDGVIHSWLNRMLLPDTVGTGGDSHTRFPIGISFPAGSGLVAFAAATGVMPLDMPESVLVRFKGELQPGITLRDLVHAIPYAAIQKGLLTVEKAGKKNIFSGRILEIEGLPTLKVEQAFELADASAERSAAGCTIKLDKEPIIEYLKSNIVMLKWMLSEGYGDVRTITRRIKGMEEWLANPVLMEADKDAEYAEIIEIDLATIKEPILCAPNDPDDARLLSDVAGDQIDEVFIGSCMTNIGHFRAAGKLLEKYQGELPTRMWIAPPTKMDKDQLTEEGYYGIFGRVGARIEIPGCSLCMGNQARVAEGASVVSTSTRNFPNRLGKGANVYLASAELAAVAAIIGKIPTVAEYLQYAKTLDATAADTYRYLNFNEIASYTKKADAVILQQAV
>NZ_CP016380.1|WP_065475389.1|530327_532586_+|patatin-like-phospholipase-domain-containing-protein
MRIFRRGWNPLFLILLACLPLMAAAQSERPKIALVLSGGGAKGAAHIGILKVLEEKRIPVDIIVGTSMGSYVAGMYAMGLSAEEVERTTLAIDWNKGYQDKVGRDELSLRKKQQSEQYQLRTDIGVNGDSVQFPDGFFQGQSMASLLRHATSNLPVQKSFDDLPIPYRAMATDMETVTPFVLDHGSLAKAMQASMSIPGALKPVEWEGHILADGGTVNNMPVDVAKAMGADVVIAVDISAKLRTRESLKSGLAMIDQLTTYMTQVGTEKQKALMGPRDVLLTPEFGNMGIADFALMPEGIKLGEQVANRASAQLDALSLSPAAYTAYRNQKLSRRAERSGQPAYYIDKVEIINKSRLSDETVRAMLKVRPDKIQTNESLEAGIRRLYALESFDRITYEVEERGGENVLVVNASEKNWGPGYLNFQFGFSDDFESSSNYNVGMSYTLTNVNDWGAEWLTEASLGTAKHFKTDFYTPLEPSQTFFGEASLAYDKTQRRIFIPEETRAMDGVSYVDSEYNFTNVDLAVGWNRQPWSRLSLGLEGKVGDIDVRNVADAKVDASSWGPYVRFEHDTLDSRYFPYQGAYWDIKGGYSSVRLDDNDTLNERYEGVNYHLAMVKPWSWDRHSLNLLLEGGGSTSQEVLPLFVQDLGGLFRMSGFQRYQLSGRYSLFGGLRYIYRVADNDFGALRAPLYLGGSLEQGGVWDKGEDISMESSFTAGSVYVGVESFLGPIFLGYGMAEGGNDMFYLQLGSTFE
>NZ_CP016380.1|WP_041216960.1|528182_530090_-|methyl-accepting-chemotaxis-protein
MLASLTLKQKILATVTLAVVLSCLLVGYFSQRSAQQLIESRMFEQELPNLTQRIGKEIEKDLTSVAGAARQLANDRFVLDWVARGMPKEQESILIDQLKDMAAQYGLVTASFADRQSAAYYNQDGFLRNLTPEQDAWFYGYTKSQQDLMLSIFRESNGEVKLFVNFQQLNGRGLAGLAKSLDSMVSMLANFRIGDSGFVFMTDGSGKVKLHPDASRIDRDSLAQLASGSGNLLNKQPFAATHAEIDGQPVVLASSYIPLLDWYLVAQVPEAEIYAELDRARLHILLVSLAIAAGMGLLGMLLAGSVSRPLNQLARLFRELGSGDGDLTQRLKVEGRDELAQVATGFNNFVAKIHGSIEQVASNSRQLAATANEVAAKAQLTQHNCTAQRDRTVQVATAIHEMGATVSEIAGNASLAADVAKQANEQADAGALVVAQARHGIVGLSGEIEQVAGVIESLASQTDSIGSILDTIRSISEQTNLLALNAAIEAARAGEQGRGFAVVADEVRNLASRSAASTAEIQGMINRLQEQSARAVSAMAQGRNQSLEVVTQADEANGALGQITAHITQISDMNIQVATATEEQSSVVGEINRNVEDINQLTMETADIAHQLTESSRSLQHLSGELDKLVGNFRL
>NZ_CP016380.1|WP_011707547.1|543489_543861_-|dihydroneopterin-aldolase
MDKVFIRGLEVLTTIGVYEWEKGIRQKLCFDLEMGFDNRPAAATDDIKLALDYATLSRKICDHASSKVVELVETMAEQVAMLVLADERVQWVKVTLTKPGAVPNAAGVGVEILRHRTPAASAN
>NZ_CP016380.1|WP_016352149.1|544037_544700_+|glycerol-3-phosphate-1-O-acyltransferase-PlsY
MTALTILMIILAYLGGSLSSAVLVSRITGLPDPRDHGSHNPGATNVLRLGGRLAAVVVLLLDVLKGTAPVYLAWYLQIKPVYLGFIGVAACLGHMYPIFFHFRGGKGVATALGTMMPIGFTMGGAVIGTWLLVLLVSGYSSLASIITVLLTPLFTYLLKPEYTLPVSLLSCLILIRHHENIARLLKGEEPRVWGRQNRAEQEEVLEMDDPEQKRDERDKK
>NZ_CP016380.1|WP_010634822.1|546012_546531_+|type-VI-secretion-system-effector-Hcp1
MPTPCYISIEGKTQGNITAGAFTSDSVGNIFVQGHEDEMLVQEFQHVVTVPTDPQSGQPAGQRVHKPFKFTVALNKAVPLMYNSLASGEMLPKVTLKWYRTSVEGKQEHFFSTVLTDATIVDIDCQMPHCQDPAKSDFTQLIQVSLAYRKIDWEHTVAGTSGADDWRAPIEA
>NZ_CP016380.1|WP_065480444.1|546856_548710_+|type-VI-secretion-system-tip-protein-VgrG
MANQTGLQFTVKVGTLPAPTFAVASFELNEGLNRPFDLHLELASLLSDIDFGAVLDQPCELLVWFEGDLLRRVSGVVAQFAQGDTGFRRTRYSMVVKPALWRLSLRTNARIFQAQKPEEILSILLQEHGITDYAFALKNEHAQREYCVQYRESDLAFLNRLAAEEGMFYFHEFEAGKHRLVFADDAAALQEGPALFFNLANQGLQQGAFVCRFHYQEAVRPSDVELKDYSFKTPAYGLSHKKMGAELEHQRDSYQHFDYPGRFKQDPSGKAFAQHRLDALRADAVTGNGHSTEAGLMPGLSFELSEHPAPALNIAWQVVHVTHTGKQPQALEEEGGSEPTVYYNDFGVVKATTTWRAQMPHKPLVDGAQIATVVGPAGEEIYCDKYGRIKLQFPWDRYGASDEHSSCWVRVGQAWAGGGYGMMAIPRIGHEVIVSFLEGDPDQPIVIGRTYHATNLPSEGLPANKTRMSLRSNTHKGKGFNELRFEDKAGQEEVFLHAQHDMNTVVLNNRSTSVNANHTEQVGGSQTVAVQGNQTMSVKLDQVTEVQGEQTVAVTKNRSTMVNDNESLQVKNNIAIQSQDGDILIATAGGYIAIDKEGNIAITGKGLVLNGTRIDLN
>NZ_CP016380.1|WP_065475403.1|548719_549127_+|DUF1795-domain-containing-protein
MYQMNEGALLIPPQWRDESLHVFVLPGDTVNLVVNRSPFEFGLAPETVYQQTLSQFAAHLKGYQELASWETHLDGQAAPAIEYTWRSTEGPMHQVVVMQVRGALLLTFTITAAGTLQDEQKQALLDVIATFKAAG
>NZ_CP016380.1|WP_081304458.1|553594_554038_+|hypothetical-protein
MDNKFLISTDTATLSVFDLDAIKHRISDTADWWSLPEDEVEEVNRGNIIFIGLGDDGVYEVNVTDHIISPDVTLFLRAPSGAIFIGAGEDTSGGDLEPDSSVSISGRMLSLPIKNYAVSFKKDDNRIHISFKPSETGSNNIKCSVKI
>NZ_CP016380.1|WP_024944784.1|555969_557313_+|two-pore-domain-potassium-channel-family-protein
MNATELWQLSPEQFNEWRRANDYPLIWDLLVASLPHFDDWMTEQKIDKQVIFQIGIARFISSRCVLSLCLYMSDDKIRLYETASSALESLRKSGLIRAETRFEPYCMWLAGKHGKDEVKRVQSLLSVSENNKGEAQVLGKHRLLNIGGVELKSPIISGRLLDFTCLDELSLDGAVNNSKVYLWHCSAKGVRVNGGVIGLDLFDSLLWDHRAWAKKRELALEDGVFQDFTIECEEIRFHSSRAVLKNFNVRAKNFDATMEHTNLDKVQVAYNENGRVDHSEASKLYRNAKRLFSSVGDTVDAGECYYKEKLHEMKSLASPRELFKECWLRSGLLKKGWLTLLCYLKCAAKFISFITWGFGERPIRSLLLSMGVILLATLTYFLAPASVTYHHLGRSLYFSIVTFVTLGYGDISQTSSPLQLLSAIEAFCGMFLTGLFLAGFASKTKQY
>NZ_CP016380.1|WP_065475406.1|557340_557673_-|hypothetical-protein
MNDLVTYIRAIHRQAGPAIIVRQQSEQHSEQDESGTLTHHRQTHYWFANGVVICHQLELDEEPSPQLCPECWISYRVVASPIPITPARKLFHNPCQEAFWLKMQEITPAG
>NZ_CP016380.1|WP_065475407.1|557785_558301_+|ClbS/DfsB-family-four-helix-bundle-protein
MGIPADKAELLLAIETNFGKLFKALQAVPEGLTQEPVMEGHSKGTRMSVANLVAYLIGWNELVIKWIERDAAGLPVDFPETGFKWNELGGLAHTFYRDYEGLTYSQLLTRLVAARARIVELIGQRSDDELYGHPWYERWPLGRMIQFNTASPYHNANGQLRKWLKSEGVKP
>NZ_CP016380.1|WP_065475409.1|558645_559818_+|hypothetical-protein
MENQAVKDSRQEAASLRRWLEPVLVLVILGSLFGYLGSQMGLSALVNTLFNTAHQLLLNTVLFIMGITVLSGALSQLLSEFGVIRLLEVLLAPLMKPVFRLPGRTALAALMTFFSDNPAVISLAKDSRFRKGFTPWQLVSLTNFGTAFGMGLIVVTFMATLQLPGGESTASAALIGLLGALIGSVVSTRLMQRMIRPLVGETPITDEVASVGAKPGLSQEAAPTWLRVLNALLDGGKSGVELGMAVIPGVLIISTFVMLLTFGPGEQGYSGEAFQGVALLPVLAAKVGWLFELLFGFTHAELVAFPVTSLGAVGAAMSLVPPFIGKGWITGNEVAVFTAMGMCWSGFLSTHTAMLDALGYRHLTSRAIVAHTIGGLCAGVAAHQLYLWLG

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Crispr_ID: NZ_CP016380_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP016380_3

786967-787072

Orphan

Consensus_repeat	Method
CTAAACGCCAAGGTTTGATCCGAATGAAATCTGT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP016380_3

>merge|NZ_CP016380|3|786967-787072|CRISPRCasFinder
CTAAACGCCAAGGTTTGATCCGAATGAAATCTGTATAAGCGAGCGACGATGGCGCTGGCCGTTTTATTTGCCCTAAACGCTAAGGTTTGATCCGAATGAAATCTGT

>NZ_CP016380|3|3|786967-787072|CRISPRCasFinder
CTAAACGCCAAGGTTTGATCCGAATGAAATCTGT	ATAAGCGAGCGACGATGGCGCTGGCCGTTTTATTTGCC
CTAAACGCTAAGGTTTGATCCGAATGAAATCTGT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP016380.1\|WP_043127303.1\|780536_781673_+\|cytochrome-d-ubiquinol-oxidase-subunit-II	unknown	unknown	gnl\|CDD\|184965
NZ_CP016380.1\|WP_011707365.1\|783293_783740_+\|protein-TolR	unknown	unknown	gnl\|CDD\|274306
NZ_CP016380.1\|WP_065475704.1\|792842_793709_-\|D-hexose-6-phosphate-mutarotase	unknown	unknown	gnl\|CDD\|185697
NZ_CP016380.1\|WP_011707363.1\|785003_786329_+\|Tol-Pal-system-protein-TolB	unknown	unknown	gnl\|CDD\|235312
NZ_CP016380.1\|WP_011707366.1\|782604_783294_+\|protein-TolQ	unknown	unknown	gnl\|CDD\|131843
NZ_CP016380.1\|WP_065475698.1\|789452_791558_-\|methyl-accepting-chemotaxis-protein	unknown	unknown	gnl\|CDD\|223910
NZ_CP016380.1\|WP_187172464.1\|781856_782102_+\|cyd-operon-YbgE-family-protein	unknown	unknown	gnl\|CDD\|370577
NZ_CP016380.1\|WP_017411112.1\|803863_804307_-\|NUDIX-domain-containing-protein	unknown	unknown	gnl\|CDD\|240034
NZ_CP016380.1\|WP_065475691.1\|778967_780524_+\|cytochrome-ubiquinol-oxidase-subunit-I	unknown	unknown	gnl\|CDD\|185052
NZ_CP016380.1\|WP_065475707.1\|797438_799616_+\|1,4-alpha-glucan-branching-protein-GlgB	unknown	unknown	gnl\|CDD\|235445
NZ_CP016380.1\|WP_065475700.1\|791698_792772_+\|quinolinate-synthase-NadA	unknown	unknown	gnl\|CDD\|236489
NZ_CP016380.1\|WP_011707367.1\|782207_782615_+\|tol-pal-system-associated-acyl-CoA-thioesterase	unknown	unknown	gnl\|CDD\|274304
NZ_CP016380.1\|WP_065475710.1\|799615_801757_+\|glycogen-debranching-protein-GlgX	unknown	unknown	gnl\|CDD\|131155
NZ_CP016380.1\|WP_011707358.1\|793824_794820_-\|type-I-glyceraldehyde-3-phosphate-dehydrogenase	unknown	unknown	gnl\|CDD\|185323
NZ_CP016380.1\|WP_017411114.1\|801813_802206_+\|peptide-methionine-(R)-S-oxide-reductase-MsrB	unknown	unknown	gnl\|CDD\|376583
NZ_CP016380.1\|WP_065475712.1\|802285_803437_-\|chromate-efflux-transporter	unknown	unknown	gnl\|CDD\|273350
NZ_CP016380.1\|WP_005304933.1\|781687_781804_+\|cytochrome-bd-I-oxidase-subunit-CydX	unknown	unknown	gnl\|CDD\|227227
NZ_CP016380.1\|WP_065475696.1\|783745_784909_+\|cell-envelope-integrity-protein-TolA	unknown	unknown	gnl\|CDD\|368950
NZ_CP016380.1\|WP_005304908.1\|786378_786903_+\|peptidoglycan-associated-lipoprotein-Pal	unknown	unknown	gnl\|CDD\|182744
NZ_CP016380.1\|WP_065475706.1\|795166_797356_+\|4-alpha-glucanotransferase	unknown	unknown	gnl\|CDD\|236831

Protein	Function_ID	Function_description	E-value
NZ_CP016380.1\|WP_043127303.1\|780536_781673_+\|cytochrome-d-ubiquinol-oxidase-subunit-II	gnl\|CDD\|184965	PRK15003, PRK15003, cytochrome d ubiquinol oxidase subunit II.	1.71002e-167
NZ_CP016380.1\|WP_011707365.1\|783293_783740_+\|protein-TolR	gnl\|CDD\|274306	TIGR02801, Protein_TolR, TolR protein. The model describes the inner membrane protein TolR, part of the TolR/TolQ complex that transduces energy from the proton-motive force, through TolA, to an outer membrane complex made up of TolB and Pal (peptidoglycan-associated lipoprotein). The complex is required to maintain outer membrane integrity, and defects may cause a defect in the import of some organic compounds in addition to the resulting morphologic. While several gene pairs homologous to talR and tolQ may be found in a single genome, but the scope of this model is set to favor finding only bone fide TolR, supported by operon structure as well as by score. [Transport and binding proteins, Other, Cellular processes, Pathogenesis].	5.92405e-42
NZ_CP016380.1\|WP_065475704.1\|792842_793709_-\|D-hexose-6-phosphate-mutarotase	gnl\|CDD\|185697	cd09020, D-hex-6-P-epi_like, D-hexose-6-phosphate epimerase-like. D-Hexose-6-phosphate epimerase Ymr099c from Saccharomyces cerevisiae belongs to the large superfamily of aldose-1-epimerases. Its active site is very similar to the catalytic site of galactose mutarotase, the best studied member of the superfamily. It also contains the conserved glutamate and histidine residues that have been shown in galactose mutarotase to be critical for catalysis, the glutamate serving as the active site base to initiate the reaction by removing the proton from the C-1 hydroxyl group of the sugar substrate, and the histidine as the active site acid to protonate the C-5 ring oxygen. In addition Ymr099c contains 2 conserved arginine residues which are involved in phosphate binding, and exhibits hexose-6-phosphate mutarotase activity on glucose-6-P, galactose-6-P and mannose-6-P.	1.36687e-120
NZ_CP016380.1\|WP_011707363.1\|785003_786329_+\|Tol-Pal-system-protein-TolB	gnl\|CDD\|235312	PRK04792, tolB, Tol-Pal system protein TolB.	0
NZ_CP016380.1\|WP_011707366.1\|782604_783294_+\|protein-TolQ	gnl\|CDD\|131843	TIGR02796, Protein_TolQ, TolQ protein. TolQ is one of the essential components of the Tol-Pal system. Together with TolR, it harnesses protonmotive force to energize TolA, which spans the periplasm to reach the complex of TolB and Pal at the outer member. The tol-pal system proves to be important for maintaining outer membrane integrity. Gene pairs similar to the TolQ and TolR gene pair often number several per genome, but this model describes specificially TolQ per se, as found in tol-pal operons. A close homolog, excluded from this model, is ExbB of the ExbB/ExbD/TonB protein complex, which powers transport of siderophores and vitamin B12 across the bacterial outer membrane. The Tol-Pal system is exploited by colicin and filamentous phage DNA to enter the cell. It is also implicated in pathogenesis in several bacterial species [Transport and binding proteins, Other, Cellular processes, Pathogenesis].	7.20038e-107
NZ_CP016380.1\|WP_065475698.1\|789452_791558_-\|methyl-accepting-chemotaxis-protein	gnl\|CDD\|223910	COG0840, Tar, Methyl-accepting chemotaxis protein [Cell motility and secretion / Signal transduction mechanisms].	3.8796e-64
NZ_CP016380.1\|WP_187172464.1\|781856_782102_+\|cyd-operon-YbgE-family-protein	gnl\|CDD\|370577	pfam09600, Cyd_oper_YbgE, Cyd operon protein YbgE (Cyd_oper_YbgE). This entry describes a small protein of unknown function, about 100 amino acids in length, essentially always found in an operon with CydAB, subunits of the cytochrome d terminal oxidase. It appears to be an integral membrane protein. It is found so far only in the Proteobacteria.	4.21679e-18
NZ_CP016380.1\|WP_017411112.1\|803863_804307_-\|NUDIX-domain-containing-protein	gnl\|CDD\|240034	cd04678, Nudix_Hydrolase_19, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required.	4.91842e-52
NZ_CP016380.1\|WP_065475691.1\|778967_780524_+\|cytochrome-ubiquinol-oxidase-subunit-I	gnl\|CDD\|185052	PRK15097, PRK15097, cytochrome bd-I ubiquinol oxidase subunit CydA.	0
NZ_CP016380.1\|WP_065475707.1\|797438_799616_+\|1,4-alpha-glucan-branching-protein-GlgB	gnl\|CDD\|235445	PRK05402, PRK05402, 1,4-alpha-glucan branching protein GlgB.	0
NZ_CP016380.1\|WP_065475700.1\|791698_792772_+\|quinolinate-synthase-NadA	gnl\|CDD\|236489	PRK09375, PRK09375, quinolinate synthase NadA.	0
NZ_CP016380.1\|WP_011707367.1\|782207_782615_+\|tol-pal-system-associated-acyl-CoA-thioesterase	gnl\|CDD\|274304	TIGR02799, Acyl-CoA_thioesterase_YbgC, tol-pal system-associated acyl-CoA thioesterase. The tol-pal system consists of five critical genes. Inner membrane proteins TolQ and TolR convert protomotive force to energy that is transduced through TolA to an outer membrane complex of TolB and Pal. The system is known to be required to maintain outer membrane integrity. In a system with several homologous parts, ExbB and ExbD transduces energy through TonB to a variety of outer membrane proteins, many of which are siderophore receptors. The tol-pal system therefore may also be involved in transport. This family consists of a protein nearly always found in operons with the genes of the tol-pal system. The significance of this thioesterase to the tol-pal system is unclear, but either of two observations may be relevant. First, Pal, or peptidoglycan-associated lipoprotein, has a conserved N-terminal cleavage and acylation that makes it a lipoprotein. Second, the tol-pal system is implicated not only in the import of certain organics but also in the maintenance of outer membrane integrity (by an unknown mechanism).	5.78381e-54
NZ_CP016380.1\|WP_065475710.1\|799615_801757_+\|glycogen-debranching-protein-GlgX	gnl\|CDD\|131155	TIGR02100, Glycogen_operon_protein_GlgX_homolog, glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase. [Energy metabolism, Biosynthesis and degradation of polysaccharides].	0
NZ_CP016380.1\|WP_011707358.1\|793824_794820_-\|type-I-glyceraldehyde-3-phosphate-dehydrogenase	gnl\|CDD\|185323	PRK15425, gapA, glyceraldehyde-3-phosphate dehydrogenase.	0
NZ_CP016380.1\|WP_017411114.1\|801813_802206_+\|peptide-methionine-(R)-S-oxide-reductase-MsrB	gnl\|CDD\|376583	pfam01641, SelR, SelR domain. Methionine sulfoxide reduction is an important process, by which cells regulate biological processes and cope with oxidative stress. MsrA, a protein involved in the reduction of methionine sulfoxides in proteins, has been known for four decades and has been extensively characterized with respect to structure and function. However, recent studies revealed that MsrA is only specific for methionine-S-sulfoxides. Because oxidized methionines occur in a mixture of R and S isomers in vivo, it was unclear how stereo-specific MsrA could be responsible for the reduction of all protein methionine sulfoxides. It appears that a second methionine sulfoxide reductase, SelR, evolved that is specific for methionine-R-sulfoxides, the activity that is different but complementary to that of MsrA. Thus, these proteins, working together, could reduce both stereoisomers of methionine sulfoxide. This domain is found both in SelR proteins and fused with the peptide methionine sulfoxide reductase enzymatic domain pfam01625. The domain has two conserved cysteine and histidines. The domain binds both selenium and zinc. The final cysteine is found to be replaced by the rare amino acid selenocysteine in some members of the family. This family has methionine-R-sulfoxide reductase activity.	3.20681e-74
NZ_CP016380.1\|WP_065475712.1\|802285_803437_-\|chromate-efflux-transporter	gnl\|CDD\|273350	TIGR00937, Chromate_transport_protein, chromate transporter, chromate ion transporter (CHR) family. Members of this family probably act as chromate transporters, and are found in Pseudomonas aeruginosa, Alcaligenes eutrophus, Vibrio cholerae, Bacillus subtilis, Ochrobactrum tritici, cyanobacteria and archaea. The protein reduces chromate accumulation and is essential for chromate resistance. [Transport and binding proteins, Anions].	7.7848e-67
NZ_CP016380.1\|WP_005304933.1\|781687_781804_+\|cytochrome-bd-I-oxidase-subunit-CydX	gnl\|CDD\|227227	COG4890, COG4890, Predicted outer membrane lipoprotein [Function unknown].	9.94001e-13
NZ_CP016380.1\|WP_065475696.1\|783745_784909_+\|cell-envelope-integrity-protein-TolA	gnl\|CDD\|368950	pfam06519, TolA, TolA C-terminal. This family consists of several bacterial TolA proteins as well as two eukaryotic proteins of unknown function. Tol proteins are involved in the translocation of group A colicins. Colicins are bacterial protein toxins, which are active against Escherichia coli and other related species (See pfam01024). TolA is anchored to the cytoplasmic membrane by a single membrane spanning segment near the N-terminus, leaving most of the protein exposed to the periplasm.	7.90244e-21
NZ_CP016380.1\|WP_005304908.1\|786378_786903_+\|peptidoglycan-associated-lipoprotein-Pal	gnl\|CDD\|182744	PRK10802, PRK10802, peptidoglycan-associated lipoprotein Pal.	3.5678e-77
NZ_CP016380.1\|WP_065475706.1\|795166_797356_+\|4-alpha-glucanotransferase	gnl\|CDD\|236831	PRK11052, malQ, 4-alpha-glucanotransferase; Provisional.	0

>NZ_CP016380.1|WP_005304908.1|786378_786903_+|peptidoglycan-associated-lipoprotein-Pal
MQLNKLLKGLAIALPLFTLAACSSSSDSDAAGAESGMTDGMGGVQTGGANGMLSPEEQMRQKFEALQRDNVIYFPFDGYDIQGQYADLLDAHASYLRERPSVKVLIEGHADERGTPEYNIALGERRAKAVAKYLQTLGVQAEQLSIVSYGEEKPLDMSHTEDAFAKNRRAVLVY
>NZ_CP016380.1|WP_011707363.1|785003_786329_+|Tol-Pal-system-protein-TolB
MIRKVFFALVGCLLLGQSAQAALDIVITGGIDSARPIAVAPFKWEGNGQLPQDIAEVVSNDLMRSGKFKPLARGQMPQTPSTSGEINFAPWASQGVEAVVVGSIAAVGDGTYKINFELVDVLKGQLAKAQGGESNGYILDSRMATIPGAQMRQFAHRISDIVYERLTGERGAFLTRLAYVSVQQGTQFPYQLRIADYDGYNEKTLLRSREPLMSPAWSPDGSKLAYVSFENQKSEIYVQDIYTQQRSLITSFRGINGAPEWSPDGRRLAIVLSKDGSPNLYVVDVASKQLTRVTTSRVIDTEPSWMPDGQNLLFTSERGGKPQIYSVNLATGMTRRMTWEGESNQGASITPDGKIMVMVTRVQGQYRIARQDMENNALLVLTQSALDESPSVAPNGSMIIYATIYQGRKSLALVSTDGRFKAVLPTSSGEIRAPAWSPFLN
>NZ_CP016380.1|WP_065475696.1|783745_784909_+|cell-envelope-integrity-protein-TolA
MDVKRGISGYLIASLLLHLIIGIILFVGLDFSKPKRPESKGQIVNAVMLDENFLNEQAKQIQQQKSQPKPQKVEKEKDKEDTDIARRELAQQQERLRIAETKRKEAEEATRKAEAEKQKKVAEQKQAEEKAQKAEEARKLEEQKAKKVEAERKAAEEESKALALKKKKEQEKKEAEEKQAKADAAKKAEAEKKAKQEAEKKAKAEADKKAKAEAEKKAKAEADKKAKEAKEEAAKKAKADAEKKAKAEADKQAKIAAERKRKAAEEAKLQKEMEDMMQQQLAAEANARSQAASAAAQGEVDKYAALIKATVERYMILDPTMRGKTCTIGVRLASTGFVISVDNGQGDPAVCRSGKAAVLKANQLPVPKDPAAFEMLKEFNLKLEPSI
>NZ_CP016380.1|WP_011707365.1|783293_783740_+|protein-TolR
MQTYQRIRRKKVAEINVVPYIDVMLVLLIIFMAVTPVITQGVKVDLPQAESEQLPEDAKPPFIVSVNTEGEYVIKAGEADDEPVPAGTPEAMQQYITEKAMGYLAINQNAPVVVAGDKSVRYEEVILLMVALKKAGVPQVGLMTDPVN
>NZ_CP016380.1|WP_011707366.1|782604_783294_+|protein-TolQ
MHAEISFIGLFWQASLLVKLVMMTLMGMSVVSWALIIQRSKAIKAANLASEQFEDRFWSGVDLNRLYQESSSRRDDIEGMEDIFYSGFKEYARLLKAGARGQDAVMDGTYRAMRVSLSRAVDELESNLPVLATIGSISPYIGLFGTVWGIMNAFIALGQVQQATLQMVAPGIAEALIATAMGLFAAIPAVIFYNRFSNKVERLENAYANFMDEFTTILNRQIAQQQGDQ
>NZ_CP016380.1|WP_011707367.1|782207_782615_+|tol-pal-system-associated-acyl-CoA-thioesterase
MGEVSEFPVRVYYEDTDAGGIVYNANYLKFMERARTEFLRCGGIEQDVMLRDGFAFVVSRTEIDFRSAARFNELLTVLTQVTEVKRASMRFSQRILAADGRLITQAMVQIACVSHPHMKPVAIPENVKGVLLSAR
>NZ_CP016380.1|WP_187172464.1|781856_782102_+|cyd-operon-YbgE-family-protein
MLLAAALLAVAILQAPNLVAANTSEHGLWLAPWLMWAVCCGVMHGLGFHPRSLVGRVLFCPWLAWPSLLYGLWLTQGYFLS
>NZ_CP016380.1|WP_005304933.1|781687_781804_+|cytochrome-bd-I-oxidase-subunit-CydX
MWYFTWILGLLLACAFGIINALWLEHTENMDRQIDENK
>NZ_CP016380.1|WP_043127303.1|780536_781673_+|cytochrome-d-ubiquinol-oxidase-subunit-II
MFDYEMLRLVWWVLVGVLLIGFAITDGFDMGVGALLPFVGKKDVERRVMLNTMGPHWEGNQVWLVTAGGALFAAWPMVYAAAFSGFYIAMILTLMALFFRPVGFKYRSLREDAKWRSNWDWALFVGSAVPPIVFGVAFGNLLQGVPFDFNQFMMLTYHGNFFGLLNPFGLLAGLVSLFMLVTQGATWLMMKTDGEVLARSRTAAMICSLLTLVLFGLAGFWVSGMEGYVVVKAAATDAVSNPMNKEVVRQAGAWMNNYNLYPWMVAAPVLGLAMSLLTALFAKLNKGWLAFTTSSLAVAGVILTAGFSMFPFVMPSSLEPSLSLTMWDATASFNTLKVMTVAAAIFVPIVLGYTLWTYIKMFGRVTSKHIEDNQQSLY
>NZ_CP016380.1|WP_065475691.1|778967_780524_+|cytochrome-ubiquinol-oxidase-subunit-I
MIAEHVVDLSRFQFAATALYHFLFVPLTLGMAFILAIMESVYVMTNNPVYRDMTKFWGKLFGINFALGVTTGLTMEFQFGTNWAYYSHYVGDIFGAPLAIEGLMAFFLESTFVGMFFFGWDRLSKRQHLAATWLMALGTNLSALWILVANGWMQNPVGAEFNFESMRMEMVSFADLVFNPVAQVKFVHTVAAGYTTGAMFVLGISSYYLLKNRDVAFARRSFAIAAAFGMASILSVLILGDESGYETGEVQKVKLAAIEAEWNTEPAPASFTLFGIPNQEEMRTDYAIKIPYALGIIATRSLDGQVTGLKDLKSEHELRVRNGMTAYDLLTKLQSGDKSDDTRARFDEVKQDLGYGLLLKRYTNNVTDATDEQIKAAVDDSIPQVAPLFFAFRIMVACGMLMLLLIGLAFYDSTRHKIGERKWLLKALLYGIPLPWIAIECGWFVAEYGRQPWTIAEVLPTSVSASNVPASEIWFSLIGICLFYTVLLIIEMYLMFKYARLGPSSLKTGKYHFEQSKA
>NZ_CP016380.1|WP_065475698.1|789452_791558_-|methyl-accepting-chemotaxis-protein
MKQRSLKTKLLLLTMGLFLASGLAMTLMQSSSLNTLRSNIVSQTRQALEQEVSRTLQFQAERYAVQIADLLQQSYQVPLGMAAQLEGSMAQPDRLLSRPQVETLLHSRLQQAGGISSIYAQFEPDGYDGQDASWQAGASHSVVGKGSLEIYFTRDQGGQISQQPVDAATSAAKYDTSVNEFGIRNSEWYLCGRDTLHPCLMEPYLYEISPGNKMLMTSLTVPVLKAGKFAGITGVDMNLPIFQQLAENLGKSLYDNQAEVTLVSKMGLIVGSNRHADKLGRPLTEAGLTAPTGQEQDTETDFILQQPVRIDAADTQWWLMLKVPKALALSQANTISNQLGDLLQATQQQQLIAIVVITLLALALLIWFIQTITAPLSLISRHVSHLSSNEGDLTQQMRIDTHQELIELGGHLNAFLGKLRGMVQGSKQIGQQVHQQAQGMKQTADTMRSSLDEQSLELESVVSAMHQMSTTAVSVAGYAEQAAQESETATHHISTAQQTLSRARTEIHTLVEDMHLADKAVAQVAQRSTNISRILDVIRAIAEQTNLLALNAAIEAARAGDMGRGFAVVADEVRALANKTRESTDEIGQLIGSLQTEVNSSQQLMSTGITRSASTVEGTEQAFEALNQVVTQIQQIHDHISQVATAAEQQSAVSDTINQNLMRIGDAATTLGQEANASHHLSEQLEQAATALATQLDRLRT
>NZ_CP016380.1|WP_065475700.1|791698_792772_+|quinolinate-synthase-NadA
MSNALNNVPPVVEMDYPFPAKPLPLSAEQKTTLIADIKALLKERKAVLVAHYYTDPEIQALAEDTGGFVGDSLEMARFGRDHEAQTLIVAGVRFMGETSKILSPHKRVLMPTLEAECSLDLGCPIEQFSAFCDAHPDHIVVVYANTSAAVKARADWVVTSSIALEIVEHLDSQGHKIIWGPDRHLGAYIEKKTGAEMLRWQGHCIVHDEFKARALRELKEQNPDAAVLVHPESPASVIELADAVGSTSQLIKAAKELPQQKLIVATDRGIFYKMQQACPEKEMVEAPTGGDGATCRSCAHCPWMAMNGLVAIKEALTDGAERHEILVDEDLRVKALIPLDRMLNFAAELRLKTQGNA
>NZ_CP016380.1|WP_065475704.1|792842_793709_-|D-hexose-6-phosphate-mutarotase
MQPTRSLTAHCTLSHHPAGQPLLTVDNGYAKAEISLFGAHVLSYQRHDEPASIWLSDKAVLDGSKPIRGGIPLCWPWFGPAPARVGSGKPSHGFARTSLWTLDGVSDHGDGTLVHLSLRDNEATRQLWPHAFELELDVLVGKELALVLTTRNTGKAPLVYSGALHTYLQISSPESVSVSGLGEPYADKLTGQNGQQQGPLTLNGPLDRVYWQPAAHISIQDGERETRVVSGNHDSVVVWTPWLEGARAMADMSDDGYRTMLCVEAAIASETGVTVAPDEEHSFSTVII
>NZ_CP016380.1|WP_011707358.1|793824_794820_-|type-I-glyceraldehyde-3-phosphate-dehydrogenase
MTIKVGINGFGRIGRFVFRLAAERSDIEVVGINDLIDVDYMAYMLKYDSTHGRFKGTVEVKDGNLVVNGKTVRVTAERDPANLKWGEIGVDVVAEATGLFLTDETARKHIAAGAKKVVLTGPSKDATPMFVMGVNDATYAGQDIVSNASCTTNCLAPIAKVLNDTFGIESGLMTTVHATTATQKTVDGPSAKDWRGGRGAAQNIIPSSTGAAKAVGVVIPELKGLLTGMAFRVPTPDVSVVDLTVNLKKAATYAEICEAMKAASEGAMKGVLGYTEDEVVSTDFLGERQTSVFDAKAGIQLNDKFVKVVSWYDNEMGYSSKVLDLIAHISK
>NZ_CP016380.1|WP_065475706.1|795166_797356_+|4-alpha-glucanotransferase
MTTLIEQLAAAKGIASEYVDAWGHPAQVSEESKAAMLGAMGYRVDDEAALTEQLEQEHRQHWLRALDPVMVVRSGEPITLEVRLPIEFVNDALSWQLKLEQGGLLSGQLTPIDGELVGVAEFEEMECQAYRVALAVQPELGYHDLILLEEGNDEPLASMRLIVAPKACYKQPPIANGRKVWGPSVQLYCLRSRHNWGIGDFSDLGQLVEKMAAWGAHFVGLNPIHALYPANPESASPYSPSSRRWLNVAYIDVEAVPEFLANARLKAEVANPAFQQHLSELRAKGNVDYTGVVETKLGMLRQVFDQASLSAERQAAFDAFVAAGGDSLQQQAAFDALQAHFYAKGENAWGWPVWPEPFRDYHNPEVAAWMAEHRQDVNFYLYLQFLADEQLARADARAKAAGMVMGIYRDLAVGVSEGSTEIWANRDLYCPKASVGAPPDILGPLGQNWGLPPMNPNQLFEAAYQPMVDLFRANMRSCGALRIDHVMALLRLWWVPPGESAAKGAYIYYPVNDLLGILALESHRNQCLLIGEDLGTVPEGIDVTLKENGVHSYKVFFFERSKGDGGFISPAHYAEQAMSALTTHDMPTLKGFWHCDDLALGRELGLYPDEDVLKTLYADRHQAKQRILDSLHGHGVISGNISHDVNWVGMNTELNHGLQLHMSRGSCALFSTQLEDWLEMDKPVNVPGTSYEYPNWRRKLSTDLEDIFANEALKALAGKMSQARDEASR
>NZ_CP016380.1|WP_065475707.1|797438_799616_+|1,4-alpha-glucan-branching-protein-GlgB
MLVERLVAARCSDPFSHLGLQANPDGPGLKLTVWLPDAQAVRVRDLKSGKIVATLAPTDDSGLFETVFTRRKNPFPYQLLADYPDASVEVIDPYQFQDAGWAGLAELTYQPENLYHTLGAQLRTVGHLDQQVEGVRFAVYAPSATAVSLIGDFNFWDGRRHPMQRSQCGHWVLFVPGLKAGDRYKFELKDPAGNRLPHKSDPVGFYCEQYPSFASVVYDHDQYQWQDAAWRESQLNDKREQPLSIYELHVGSWKRHPNGDSLSWRELAVELVDYVKGMEYTHIELLPVSEHPFSGSWGYQPVGMFSPTSRYGTADDFKYFVDQCHQAGIGVILDWVPAHFPSDAHGLARFDGTPLYEYEDPRRGWHPDWNSYIYDFGRNTVRQFLVASALFWLDKFHVDGLRVDAVASMLYLDYSRNAGEWVPNVDGGNHNYEAISLLKWTNEEVYGKYPHAMTIAEESTAFAGVSRPTFLGGLGFGFKWNMGWMHDTLTYMQKEPIHRRYHHNDMTFSMVYHYDENFILSLSHDEVVHGKHSMLYKMPGDEWQQAANLRAYMGFMYAHPGKKLNFMGTEIAQSNEWNHDAQLPWHLLQYPKHGGQQRLIHDLNHLYRHEPALYQADYEQNGFRWLDHNDADNSIFAWLRADKQGANPLVVACNFTPVPRLAYRLGVPAAGHYRVVLNTDSEHYWGSNYDVGLVFAAEPTPWQGMAHSIVLDLPPLATLFIKQES
>NZ_CP016380.1|WP_065475710.1|799615_801757_+|glycogen-debranching-protein-GlgX
MFVMEKGQDHPLGALLDETGCHFCVWAPQSDKVELCLFDEQERELARLELPGRRGQYRFGHVRGVKAGQRYGYRVHGTSQEGMLFDPDKLLIDPYAKALSRPTHWDDALYQGDSAAMVAKSVVVDDTFDWQGVGKPAIEPARTVIYETHVKGFTRQHQGVPSELRGTYLGICHPLIIEHLKSLGITSVQLMPVAAFMSEPRLEQLGLTNYWGYNPIAFFAPEPRYAAQEAVTEFKTMVRELHKAGLEVILDVVYNHTAESGFDGPMLSFKGFDNAGYYAFEAGAHGPDYTRHANVTGCGNSVNLDHPNSLRLVLDALRYWVTEMQVDGFRFDLAVTLAREAGEFDPMGAFFKAMMADPVLARVKLIAEPWDIGPFGYRLGQFPSQWLEINDRYRDTVRAFWRGDAGKMGDFATRLVGSRDLFPKNWRSPHTSVNYLCYHDGFTLEDLVSYNQRHNQANGEDNRDGHGNNLSNNHGVEGPTLDPRVNNLRQQQKRNLIATLLLSQGTPHFLAGDEMGRSQLGNNNAYCQDNQISWVNWQWRPEDERLLAFTQQMLALRAESTVFSNLQLSDDSWNGAPSSCHQVNWYHPDGHQLTDQDWHAPMGQAFAMDIGMIGCGGERWYVLFNASDYDIQFRLPPPGEGLEWIQTIDTATNDGLPFLPDDIKRQVAVGRAHSLKLLERVALSAVALAEEGVVATPDVAVVLPTGSQFPLAG
>NZ_CP016380.1|WP_017411114.1|801813_802206_+|peptide-methionine-(R)-S-oxide-reductase-MsrB
MSGNTPNPEQWRRQLSAEQYHVCWEKGTERPYSGALLHNRKSGDYLCVCCKQVLFHSDAKFDSGCGWPSFDRAIEGTVTYTEDGSHGMKRVEITCSQCGSHLGHVFPDGPTETGQRYCVNSLSLDFDPEP
>NZ_CP016380.1|WP_065475712.1|802285_803437_-|chromate-efflux-transporter
MGQVFIQFLWLGCVSFGGPAAHIGYFQRTFVERLGWLTQAEFAQLLALCQLLPGPASSQIGFAIGRQRAGLAGALAAFAGFTLPSFLLLLATAIGLGQLGNNVWLDAALHGLKLLALVVVADAVLTMSRQFCKTTRNQGIMVATAAALWWQPGLLTQLVMLAGAALLCARVGAPQTPGPQPSPAQSIPVHQPHWPTLLLFALLFVGLPLLGGPVGQLVADFYRAGSLVFGGGHVVLPLLAESVGHSLNPQQFLTGYSLAQLVPGPMFTLATYLGAQLLPATPVGGALLATLALFLPGFLLLWAMGPCWQSWLARPRLAGAVAGINAAVVGLLLAALYQPVWQSAVLAPTDLALAAIGFYLLRVLKLPILALATLLVVATLLLA
>NZ_CP016380.1|WP_017411112.1|803863_804307_-|NUDIX-domain-containing-protein
MSTPYPRVGVGVILTNRQGQVLLGKRKGSHAPYWSIAGGHLELGETFESAAIREVAEETGFQISNPSVIAVTNNLETWRESGLHYVSVTLLAEVEGEPQLLEPEKCEGWVWCDPRNLPEPHFDASRQSIACWLAGRCYLPTPNQPTP

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Crispr_ID: NZ_CP016380_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP016380_4

804282-804395

Orphan

Consensus_repeat	Method
CCGACGCGGGGATAGGGAGTAGACATAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP016380_4

>merge|NZ_CP016380|4|804282-804395|CRISPRCasFinder
CCGACGCGGGGATAGGGAGTAGACATAAGAAGAGCTCCTTGCTGAGGGGGGGAATGGGTTGGTCAGGATCACTCTGTCATCGACTGCCGACGCGGGGATAGGGGGTAGACATAA

>NZ_CP016380|4|4|804282-804395|CRISPRCasFinder
CCGACGCGGGGATAGGGAGTAGACATAA	GAAGAGCTCCTTGCTGAGGGGGGGAATGGGTTGGTCAGGATCACTCTGTCATCGACTG
CCGACGCGGGGATAGGGGGTAGACATAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP016380.1\|WP_065475718.1\|809040_810282_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|340888
NZ_CP016380.1\|WP_011707358.1\|793824_794820_-\|type-I-glyceraldehyde-3-phosphate-dehydrogenase	unknown	unknown	gnl\|CDD\|185323
NZ_CP016380.1\|WP_016351946.1\|806227_806653_+\|MarR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197670
NZ_CP016380.1\|WP_011707347.1\|808253_808874_-\|transcriptional-regulator	unknown	unknown	gnl\|CDD\|225222
NZ_CP016380.1\|WP_065475704.1\|792842_793709_-\|D-hexose-6-phosphate-mutarotase	unknown	unknown	gnl\|CDD\|185697
NZ_CP016380.1\|WP_005304871.1\|807468_807945_-\|Lrp/AsnC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224439
NZ_CP016380.1\|WP_065475698.1\|789452_791558_-\|methyl-accepting-chemotaxis-protein	unknown	unknown	gnl\|CDD\|223910
NZ_CP016380.1\|WP_017411114.1\|801813_802206_+\|peptide-methionine-(R)-S-oxide-reductase-MsrB	unknown	unknown	gnl\|CDD\|376583
NZ_CP016380.1\|WP_065475700.1\|791698_792772_+\|quinolinate-synthase-NadA	unknown	unknown	gnl\|CDD\|236489
NZ_CP016380.1\|WP_065475710.1\|799615_801757_+\|glycogen-debranching-protein-GlgX	unknown	unknown	gnl\|CDD\|131155
NZ_CP016380.1\|WP_135318988.1\|808062_808278_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP016380.1\|WP_043166132.1\|810631_811453_+\|Cof-type-HAD-IIB-family-hydrolase	unknown	unknown	gnl\|CDD\|182523
NZ_CP016380.1\|WP_065475715.1\|804551_805556_-\|NADP-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|176190
NZ_CP016380.1\|WP_005304873.1\|807061_807379_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225653
NZ_CP016380.1\|WP_065475712.1\|802285_803437_-\|chromate-efflux-transporter	unknown	unknown	gnl\|CDD\|273350
NZ_CP016380.1\|WP_065475706.1\|795166_797356_+\|4-alpha-glucanotransferase	unknown	unknown	gnl\|CDD\|236831
NZ_CP016380.1\|WP_041216536.1\|805638_806085_-\|organic-hydroperoxide-resistance-protein	unknown	unknown	gnl\|CDD\|274649
NZ_CP016380.1\|WP_044800769.1\|806688_806916_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225562
NZ_CP016380.1\|WP_024945827.1\|787061_787871_+\|tol-pal-system-protein-YbgF	unknown	unknown	gnl\|CDD\|182745
NZ_CP016380.1\|WP_065475707.1\|797438_799616_+\|1,4-alpha-glucan-branching-protein-GlgB	unknown	unknown	gnl\|CDD\|235445

Protein	Function_ID	Function_description	E-value
NZ_CP016380.1\|WP_065475718.1\|809040_810282_+\|MFS-transporter	gnl\|CDD\|340888	cd17330, MFS_SLC46_TetA_like, Eukaryotic Solute carrier 46 (SLC46) family, Bacterial Tetracycline resistance proteins, and similar proteins of the Major Facilitator Superfamily of transporters. This family is composed of the eukaryotic proteins MFSD9, MFSD10, MFSD14, and SLC46 family proteins, as well as bacterial multidrug resistance (MDR) transporters such as tetracycline resistance protein TetA and multidrug resistance protein MdtG. MDR transporters are drug/H+ antiporters (DHA) that mediate the efflux of a variety of drugs and toxic compounds, and confer resistance to these compounds. TetA proteins confer resistance to tetracycline while MdtG confers resistance to fosfomycin and deoxycholate. The Solute carrier 46 (SLC46) family is composed of three vertebrate members (SLC46A1, SLC46A2, and SLC46A3), the best-studied of which is SLC46A1, which functions both as an intestinal proton-coupled high-affinity folate transporter involved in the absorption of folates and as an intestinal heme transporter which mediates heme uptake. MFSD10 facilitates the uptake of organic anions such as some non-steroidal anti-inflammatory drugs (NSAIDs) and confers resistance to such NSAIDs. The SLC46/TetA-like family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	2.53559e-41
NZ_CP016380.1\|WP_011707358.1\|793824_794820_-\|type-I-glyceraldehyde-3-phosphate-dehydrogenase	gnl\|CDD\|185323	PRK15425, gapA, glyceraldehyde-3-phosphate dehydrogenase.	0
NZ_CP016380.1\|WP_016351946.1\|806227_806653_+\|MarR-family-transcriptional-regulator	gnl\|CDD\|197670	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein.	1.50891e-20
NZ_CP016380.1\|WP_011707347.1\|808253_808874_-\|transcriptional-regulator	gnl\|CDD\|225222	COG2345, COG2345, Predicted transcriptional regulator [Transcription].	1.14517e-53
NZ_CP016380.1\|WP_065475704.1\|792842_793709_-\|D-hexose-6-phosphate-mutarotase	gnl\|CDD\|185697	cd09020, D-hex-6-P-epi_like, D-hexose-6-phosphate epimerase-like. D-Hexose-6-phosphate epimerase Ymr099c from Saccharomyces cerevisiae belongs to the large superfamily of aldose-1-epimerases. Its active site is very similar to the catalytic site of galactose mutarotase, the best studied member of the superfamily. It also contains the conserved glutamate and histidine residues that have been shown in galactose mutarotase to be critical for catalysis, the glutamate serving as the active site base to initiate the reaction by removing the proton from the C-1 hydroxyl group of the sugar substrate, and the histidine as the active site acid to protonate the C-5 ring oxygen. In addition Ymr099c contains 2 conserved arginine residues which are involved in phosphate binding, and exhibits hexose-6-phosphate mutarotase activity on glucose-6-P, galactose-6-P and mannose-6-P.	1.36687e-120
NZ_CP016380.1\|WP_005304871.1\|807468_807945_-\|Lrp/AsnC-family-transcriptional-regulator	gnl\|CDD\|224439	COG1522, Lrp, Transcriptional regulators [Transcription].	3.22775e-48
NZ_CP016380.1\|WP_065475698.1\|789452_791558_-\|methyl-accepting-chemotaxis-protein	gnl\|CDD\|223910	COG0840, Tar, Methyl-accepting chemotaxis protein [Cell motility and secretion / Signal transduction mechanisms].	3.8796e-64
NZ_CP016380.1\|WP_017411114.1\|801813_802206_+\|peptide-methionine-(R)-S-oxide-reductase-MsrB	gnl\|CDD\|376583	pfam01641, SelR, SelR domain. Methionine sulfoxide reduction is an important process, by which cells regulate biological processes and cope with oxidative stress. MsrA, a protein involved in the reduction of methionine sulfoxides in proteins, has been known for four decades and has been extensively characterized with respect to structure and function. However, recent studies revealed that MsrA is only specific for methionine-S-sulfoxides. Because oxidized methionines occur in a mixture of R and S isomers in vivo, it was unclear how stereo-specific MsrA could be responsible for the reduction of all protein methionine sulfoxides. It appears that a second methionine sulfoxide reductase, SelR, evolved that is specific for methionine-R-sulfoxides, the activity that is different but complementary to that of MsrA. Thus, these proteins, working together, could reduce both stereoisomers of methionine sulfoxide. This domain is found both in SelR proteins and fused with the peptide methionine sulfoxide reductase enzymatic domain pfam01625. The domain has two conserved cysteine and histidines. The domain binds both selenium and zinc. The final cysteine is found to be replaced by the rare amino acid selenocysteine in some members of the family. This family has methionine-R-sulfoxide reductase activity.	3.20681e-74
NZ_CP016380.1\|WP_065475700.1\|791698_792772_+\|quinolinate-synthase-NadA	gnl\|CDD\|236489	PRK09375, PRK09375, quinolinate synthase NadA.	0
NZ_CP016380.1\|WP_065475710.1\|799615_801757_+\|glycogen-debranching-protein-GlgX	gnl\|CDD\|131155	TIGR02100, Glycogen_operon_protein_GlgX_homolog, glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase. [Energy metabolism, Biosynthesis and degradation of polysaccharides].	0
NZ_CP016380.1\|WP_043166132.1\|810631_811453_+\|Cof-type-HAD-IIB-family-hydrolase	gnl\|CDD\|182523	PRK10530, PRK10530, pyridoxal phosphate (PLP) phosphatase; Provisional.	7.51279e-84
NZ_CP016380.1\|WP_065475715.1\|804551_805556_-\|NADP-dependent-oxidoreductase	gnl\|CDD\|176190	cd05288, PGDH, Prostaglandin dehydrogenases. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.	3.23405e-171
NZ_CP016380.1\|WP_005304873.1\|807061_807379_+\|hypothetical-protein	gnl\|CDD\|225653	COG3111, COG3111, Periplasmic protein with OB-fold [Function unknown].	0.00960974
NZ_CP016380.1\|WP_065475712.1\|802285_803437_-\|chromate-efflux-transporter	gnl\|CDD\|273350	TIGR00937, Chromate_transport_protein, chromate transporter, chromate ion transporter (CHR) family. Members of this family probably act as chromate transporters, and are found in Pseudomonas aeruginosa, Alcaligenes eutrophus, Vibrio cholerae, Bacillus subtilis, Ochrobactrum tritici, cyanobacteria and archaea. The protein reduces chromate accumulation and is essential for chromate resistance. [Transport and binding proteins, Anions].	7.7848e-67
NZ_CP016380.1\|WP_065475706.1\|795166_797356_+\|4-alpha-glucanotransferase	gnl\|CDD\|236831	PRK11052, malQ, 4-alpha-glucanotransferase; Provisional.	0
NZ_CP016380.1\|WP_041216536.1\|805638_806085_-\|organic-hydroperoxide-resistance-protein	gnl\|CDD\|274649	TIGR03561, organ_hyd_perox, peroxiredoxin, Ohr subfamily. pfam02566, OsmC-like protein, contains several deeply split clades of homologous proteins. The clade modeled here includes the protein Ohr, or organic hydroperoxide resistance protein. [Cellular processes, Detoxification].	2.85818e-57
NZ_CP016380.1\|WP_044800769.1\|806688_806916_+\|hypothetical-protein	gnl\|CDD\|225562	COG3017, LolB, Outer membrane lipoprotein involved in outer membrane biogenesis [Cell envelope biogenesis, outer membrane].	0.00983786
NZ_CP016380.1\|WP_024945827.1\|787061_787871_+\|tol-pal-system-protein-YbgF	gnl\|CDD\|182745	PRK10803, PRK10803, tol-pal system protein YbgF; Provisional.	6.11429e-64
NZ_CP016380.1\|WP_065475707.1\|797438_799616_+\|1,4-alpha-glucan-branching-protein-GlgB	gnl\|CDD\|235445	PRK05402, PRK05402, 1,4-alpha-glucan branching protein GlgB.	0

>NZ_CP016380.1|WP_065475712.1|802285_803437_-|chromate-efflux-transporter
MGQVFIQFLWLGCVSFGGPAAHIGYFQRTFVERLGWLTQAEFAQLLALCQLLPGPASSQIGFAIGRQRAGLAGALAAFAGFTLPSFLLLLATAIGLGQLGNNVWLDAALHGLKLLALVVVADAVLTMSRQFCKTTRNQGIMVATAAALWWQPGLLTQLVMLAGAALLCARVGAPQTPGPQPSPAQSIPVHQPHWPTLLLFALLFVGLPLLGGPVGQLVADFYRAGSLVFGGGHVVLPLLAESVGHSLNPQQFLTGYSLAQLVPGPMFTLATYLGAQLLPATPVGGALLATLALFLPGFLLLWAMGPCWQSWLARPRLAGAVAGINAAVVGLLLAALYQPVWQSAVLAPTDLALAAIGFYLLRVLKLPILALATLLVVATLLLA
>NZ_CP016380.1|WP_017411114.1|801813_802206_+|peptide-methionine-(R)-S-oxide-reductase-MsrB
MSGNTPNPEQWRRQLSAEQYHVCWEKGTERPYSGALLHNRKSGDYLCVCCKQVLFHSDAKFDSGCGWPSFDRAIEGTVTYTEDGSHGMKRVEITCSQCGSHLGHVFPDGPTETGQRYCVNSLSLDFDPEP
>NZ_CP016380.1|WP_065475710.1|799615_801757_+|glycogen-debranching-protein-GlgX
MFVMEKGQDHPLGALLDETGCHFCVWAPQSDKVELCLFDEQERELARLELPGRRGQYRFGHVRGVKAGQRYGYRVHGTSQEGMLFDPDKLLIDPYAKALSRPTHWDDALYQGDSAAMVAKSVVVDDTFDWQGVGKPAIEPARTVIYETHVKGFTRQHQGVPSELRGTYLGICHPLIIEHLKSLGITSVQLMPVAAFMSEPRLEQLGLTNYWGYNPIAFFAPEPRYAAQEAVTEFKTMVRELHKAGLEVILDVVYNHTAESGFDGPMLSFKGFDNAGYYAFEAGAHGPDYTRHANVTGCGNSVNLDHPNSLRLVLDALRYWVTEMQVDGFRFDLAVTLAREAGEFDPMGAFFKAMMADPVLARVKLIAEPWDIGPFGYRLGQFPSQWLEINDRYRDTVRAFWRGDAGKMGDFATRLVGSRDLFPKNWRSPHTSVNYLCYHDGFTLEDLVSYNQRHNQANGEDNRDGHGNNLSNNHGVEGPTLDPRVNNLRQQQKRNLIATLLLSQGTPHFLAGDEMGRSQLGNNNAYCQDNQISWVNWQWRPEDERLLAFTQQMLALRAESTVFSNLQLSDDSWNGAPSSCHQVNWYHPDGHQLTDQDWHAPMGQAFAMDIGMIGCGGERWYVLFNASDYDIQFRLPPPGEGLEWIQTIDTATNDGLPFLPDDIKRQVAVGRAHSLKLLERVALSAVALAEEGVVATPDVAVVLPTGSQFPLAG
>NZ_CP016380.1|WP_065475707.1|797438_799616_+|1,4-alpha-glucan-branching-protein-GlgB
MLVERLVAARCSDPFSHLGLQANPDGPGLKLTVWLPDAQAVRVRDLKSGKIVATLAPTDDSGLFETVFTRRKNPFPYQLLADYPDASVEVIDPYQFQDAGWAGLAELTYQPENLYHTLGAQLRTVGHLDQQVEGVRFAVYAPSATAVSLIGDFNFWDGRRHPMQRSQCGHWVLFVPGLKAGDRYKFELKDPAGNRLPHKSDPVGFYCEQYPSFASVVYDHDQYQWQDAAWRESQLNDKREQPLSIYELHVGSWKRHPNGDSLSWRELAVELVDYVKGMEYTHIELLPVSEHPFSGSWGYQPVGMFSPTSRYGTADDFKYFVDQCHQAGIGVILDWVPAHFPSDAHGLARFDGTPLYEYEDPRRGWHPDWNSYIYDFGRNTVRQFLVASALFWLDKFHVDGLRVDAVASMLYLDYSRNAGEWVPNVDGGNHNYEAISLLKWTNEEVYGKYPHAMTIAEESTAFAGVSRPTFLGGLGFGFKWNMGWMHDTLTYMQKEPIHRRYHHNDMTFSMVYHYDENFILSLSHDEVVHGKHSMLYKMPGDEWQQAANLRAYMGFMYAHPGKKLNFMGTEIAQSNEWNHDAQLPWHLLQYPKHGGQQRLIHDLNHLYRHEPALYQADYEQNGFRWLDHNDADNSIFAWLRADKQGANPLVVACNFTPVPRLAYRLGVPAAGHYRVVLNTDSEHYWGSNYDVGLVFAAEPTPWQGMAHSIVLDLPPLATLFIKQES
>NZ_CP016380.1|WP_065475706.1|795166_797356_+|4-alpha-glucanotransferase
MTTLIEQLAAAKGIASEYVDAWGHPAQVSEESKAAMLGAMGYRVDDEAALTEQLEQEHRQHWLRALDPVMVVRSGEPITLEVRLPIEFVNDALSWQLKLEQGGLLSGQLTPIDGELVGVAEFEEMECQAYRVALAVQPELGYHDLILLEEGNDEPLASMRLIVAPKACYKQPPIANGRKVWGPSVQLYCLRSRHNWGIGDFSDLGQLVEKMAAWGAHFVGLNPIHALYPANPESASPYSPSSRRWLNVAYIDVEAVPEFLANARLKAEVANPAFQQHLSELRAKGNVDYTGVVETKLGMLRQVFDQASLSAERQAAFDAFVAAGGDSLQQQAAFDALQAHFYAKGENAWGWPVWPEPFRDYHNPEVAAWMAEHRQDVNFYLYLQFLADEQLARADARAKAAGMVMGIYRDLAVGVSEGSTEIWANRDLYCPKASVGAPPDILGPLGQNWGLPPMNPNQLFEAAYQPMVDLFRANMRSCGALRIDHVMALLRLWWVPPGESAAKGAYIYYPVNDLLGILALESHRNQCLLIGEDLGTVPEGIDVTLKENGVHSYKVFFFERSKGDGGFISPAHYAEQAMSALTTHDMPTLKGFWHCDDLALGRELGLYPDEDVLKTLYADRHQAKQRILDSLHGHGVISGNISHDVNWVGMNTELNHGLQLHMSRGSCALFSTQLEDWLEMDKPVNVPGTSYEYPNWRRKLSTDLEDIFANEALKALAGKMSQARDEASR
>NZ_CP016380.1|WP_011707358.1|793824_794820_-|type-I-glyceraldehyde-3-phosphate-dehydrogenase
MTIKVGINGFGRIGRFVFRLAAERSDIEVVGINDLIDVDYMAYMLKYDSTHGRFKGTVEVKDGNLVVNGKTVRVTAERDPANLKWGEIGVDVVAEATGLFLTDETARKHIAAGAKKVVLTGPSKDATPMFVMGVNDATYAGQDIVSNASCTTNCLAPIAKVLNDTFGIESGLMTTVHATTATQKTVDGPSAKDWRGGRGAAQNIIPSSTGAAKAVGVVIPELKGLLTGMAFRVPTPDVSVVDLTVNLKKAATYAEICEAMKAASEGAMKGVLGYTEDEVVSTDFLGERQTSVFDAKAGIQLNDKFVKVVSWYDNEMGYSSKVLDLIAHISK
>NZ_CP016380.1|WP_065475704.1|792842_793709_-|D-hexose-6-phosphate-mutarotase
MQPTRSLTAHCTLSHHPAGQPLLTVDNGYAKAEISLFGAHVLSYQRHDEPASIWLSDKAVLDGSKPIRGGIPLCWPWFGPAPARVGSGKPSHGFARTSLWTLDGVSDHGDGTLVHLSLRDNEATRQLWPHAFELELDVLVGKELALVLTTRNTGKAPLVYSGALHTYLQISSPESVSVSGLGEPYADKLTGQNGQQQGPLTLNGPLDRVYWQPAAHISIQDGERETRVVSGNHDSVVVWTPWLEGARAMADMSDDGYRTMLCVEAAIASETGVTVAPDEEHSFSTVII
>NZ_CP016380.1|WP_065475700.1|791698_792772_+|quinolinate-synthase-NadA
MSNALNNVPPVVEMDYPFPAKPLPLSAEQKTTLIADIKALLKERKAVLVAHYYTDPEIQALAEDTGGFVGDSLEMARFGRDHEAQTLIVAGVRFMGETSKILSPHKRVLMPTLEAECSLDLGCPIEQFSAFCDAHPDHIVVVYANTSAAVKARADWVVTSSIALEIVEHLDSQGHKIIWGPDRHLGAYIEKKTGAEMLRWQGHCIVHDEFKARALRELKEQNPDAAVLVHPESPASVIELADAVGSTSQLIKAAKELPQQKLIVATDRGIFYKMQQACPEKEMVEAPTGGDGATCRSCAHCPWMAMNGLVAIKEALTDGAERHEILVDEDLRVKALIPLDRMLNFAAELRLKTQGNA
>NZ_CP016380.1|WP_065475698.1|789452_791558_-|methyl-accepting-chemotaxis-protein
MKQRSLKTKLLLLTMGLFLASGLAMTLMQSSSLNTLRSNIVSQTRQALEQEVSRTLQFQAERYAVQIADLLQQSYQVPLGMAAQLEGSMAQPDRLLSRPQVETLLHSRLQQAGGISSIYAQFEPDGYDGQDASWQAGASHSVVGKGSLEIYFTRDQGGQISQQPVDAATSAAKYDTSVNEFGIRNSEWYLCGRDTLHPCLMEPYLYEISPGNKMLMTSLTVPVLKAGKFAGITGVDMNLPIFQQLAENLGKSLYDNQAEVTLVSKMGLIVGSNRHADKLGRPLTEAGLTAPTGQEQDTETDFILQQPVRIDAADTQWWLMLKVPKALALSQANTISNQLGDLLQATQQQQLIAIVVITLLALALLIWFIQTITAPLSLISRHVSHLSSNEGDLTQQMRIDTHQELIELGGHLNAFLGKLRGMVQGSKQIGQQVHQQAQGMKQTADTMRSSLDEQSLELESVVSAMHQMSTTAVSVAGYAEQAAQESETATHHISTAQQTLSRARTEIHTLVEDMHLADKAVAQVAQRSTNISRILDVIRAIAEQTNLLALNAAIEAARAGDMGRGFAVVADEVRALANKTRESTDEIGQLIGSLQTEVNSSQQLMSTGITRSASTVEGTEQAFEALNQVVTQIQQIHDHISQVATAAEQQSAVSDTINQNLMRIGDAATTLGQEANASHHLSEQLEQAATALATQLDRLRT
>NZ_CP016380.1|WP_024945827.1|787061_787871_+|tol-pal-system-protein-YbgF
MKSVYKQAVVALAVLVALNAQAAAPVSDLSGDSGGGVVLSGNNGAIVPTGSLEDRVALLERTLNARLRLQAELQQQVDSLQGEVSELRGQLEQQTYQMEQSQERQRQLYQELDKVANSQPAATPAAPAAAAASATPAAAANYSTNLNENQAYDAAVNMVLKEKNYDKAIPAFEGFIKQYPSSSYVPNAHYWLGQLLFNKGDRTGAAAQFTTVATKFSKSPKRADALLKLGMLAQLDGKKAEAKNFYEQVIKGYPNTSPAQLAKQSLSKL
>NZ_CP016380.1|WP_065475715.1|804551_805556_-|NADP-dependent-oxidoreductase
MNQSSHQIQLLRRPVGLPSLADFTLTEVALPELQEGEVQVANQWLSVDPYMRGRMSEAKSYVPPFPLNGPLDGGAIGVVEASRHPDFAVGDRVSSMLGWRDRFVANGAQLTRLPDTRLPPQLFLGALGMPGMTAWTGLNRIAKLQAGETVLVSAASGAVGSMVVQLAKRAGARVIGSTGSADKVAYLKSLGADEVINYRTTPDLDAELARLAPEGIHVYFENVGGAMLDAALNHMVMHGRIVMCGLIEQYNGQSEASGPRNLSQVIRKRLTMQGLIVFDHWQHYGEFLAEVTPAFDAGTLQAEETVYQGLASMPQAFIGLFEGRNTGKMLVKLA
>NZ_CP016380.1|WP_041216536.1|805638_806085_-|organic-hydroperoxide-resistance-protein
MKTLYRTQAIAQAGRNGEVHTLDNSLQLALALPTALGGNGKGNNPEQLLAAGYAACFSNALIHVAHKLGAPLSSAPVTAGVELLALDDGRFNFAITLDVALAATQPEQAAQAEQIVRLAHQTCPFSNAMRGNVVTRLRLNGAPLDETA
>NZ_CP016380.1|WP_016351946.1|806227_806653_+|MarR-family-transcriptional-regulator
MSELKKQVCFALYSASNAVMRAYRPLLDKLDLTYTQYLVMLSLWARDEVSLKEIGQETGLDAGTLTPIVKRLESKGWLTRTVSSEDERQKCIGLTEAGRQLQQEVRECCLADNLRNQVDLADAELAQLKQLCDRISAQLGR
>NZ_CP016380.1|WP_044800769.1|806688_806916_+|hypothetical-protein
MKLLLPLFALLLTACSAGSHAPSMAIDDADAWQAICKDGTRVRAVVEEGICADHRGVAMWTNKPRAARMAEEAAK
>NZ_CP016380.1|WP_005304873.1|807061_807379_+|hypothetical-protein
MQSSLVGLSILWGLASFGVQGDFIESRDSVAPSWQAESRVEMEGYLIESLGEDRWLFDNGSESLLVSLPQGQWVPTGERLRVSGEPQQEQAGWLLQVQDVSQVAV
>NZ_CP016380.1|WP_005304871.1|807468_807945_-|Lrp/AsnC-family-transcriptional-regulator
MLKLDRIDRHILELMQENGRISNLELAELVGLSPSPCSRRVKALEDAGLIDTHVTLLNARQLGLTLTAYIHISMDRHTPERFENFDRAISELPEVLECDLITGNDADYQLKVVVRDMEHYQHFLLDKLTHIPGVTGVRSSFVLRRIKHKTALPLNHLG
>NZ_CP016380.1|WP_135318988.1|808062_808278_+|hypothetical-protein
MVTSSGGKTETQPGLCGEGPYRVNNPISRLTLSGNDGLEREHPLPEGNKAGIPAPALLFLAFVDQGCGLMR
>NZ_CP016380.1|WP_011707347.1|808253_808874_-|transcriptional-regulator
MNASTDKILFLLKSHGPQSAAELGEQLQMTSMGARQHLMTLEADGWVSFNDEARGRGRPVRLWHLTEQAWQRFPDSHSELTLQLIDNIQQLFGEVGMERLIAQREQQQLARYQAELTQPALADRLAALTAQRTREGYMADFRQEEDGSWLLWESHCPICAAARACRGFCRSELEMFRRLLAPAGVEREQYLLEGDHRCLYRIRPQP
>NZ_CP016380.1|WP_065475718.1|809040_810282_+|MFS-transporter
MEGIKGQASLWVLVMTVTLAVAGFSLPSPVLAPLMLDPAQGMLTPAASDWSRKVWLGVIMGLYPLFQLVGAPWLGKLSDRHGRKPVLTLCLVGVLVGYALMALGIAWRSLPLLLLSRVVEGFFNGDIAIVQAMAADMSTAKTKARSFAWINIGMNLGWVVGPMIGGYAAVVSGDYSLAAWLAVAMTLVNLLLVLWLLPNRPAAARSEQPPPALSSRQLLLQPALLPYFVLTLLSYGAVQLYFTYFNVWLVERLAWDPVQLSQAAVLVSVPMILGSWLGSRLARHWRGSSLGVVGHLVMAAGMLMFVLPGHWWGLALTFIPTGIGMSLGELATSVAVSNRSHAEQQGQAMGLYRGLAVGSEILAVVVGSLVLLAGTEWPFYLAALCSLLCAIGFYGLRRAADRRQQLDVQVEAG
>NZ_CP016380.1|WP_043166132.1|810631_811453_+|Cof-type-HAD-IIB-family-hydrolase
MSRFQAIALDMDGTLLTRDHKISSATRAALAQARAHGIKVLLVTGRHFMTARPFHHELALDTPIICSNGAYLYDPVQEQILTGDPLAVAPLSRLLAEVQAHQMGALFHLDEGIGYLGCEEHVTRMRHWSATQPDHLKISLLPAEDLASWLSRPVWKLELFNQDPALLHHFMAEVVEQLPFTRDWAAPYAVELVQPGCSKGNRLAQWAASEGIAMENVVAFGDNNNDISMFEQVGLAVAMGNAASQIQALADRVTADHNEDGIALALQRWVLPA

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Crispr_ID: NZ_CP016380_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP016380_5

878943-879075

Orphan

Consensus_repeat	Method
ATAGCTCACGCCTAACCAAATGAAAAACCGTGCTGGCAATTGATC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP016380_5

>merge|NZ_CP016380|5|878943-879075|CRISPRCasFinder
ATAGCTCACGCCTAACCAAATGAAAAACCGTGCTGGCAATTGATCCCATTTGAATCGGCGTTGCCGGAAAAAATAGCGGTCTATTCCGATAGCTCACGCCTAACCAAATGAAAAACCGTGCTGGCAATTGATC

>NZ_CP016380|5|5|878943-879075|CRISPRCasFinder
ATAGCTCACGCCTAACCAAATGAAAAACCGTGCTGGCAATTGATC	CCATTTGAATCGGCGTTGCCGGAAAAAATAGCGGTCTATTCCG
ATAGCTCACGCCTAACCAAATGAAAAACCGTGCTGGCAATTGATC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP016380.1\|WP_005304459.1\|880180_880630_-\|RNA-polymerase-binding-protein-DksA	unknown	unknown	gnl\|CDD\|182722
NZ_CP016380.1\|WP_065475807.1\|884740_887074_+\|penicillin-binding-protein-1B	unknown	unknown	gnl\|CDD\|273952
NZ_CP016380.1\|WP_065475798.1\|875070_875928_-\|pantoate--beta-alanine-ligase	unknown	unknown	gnl\|CDD\|234741
NZ_CP016380.1\|WP_011707281.1\|876113_876908_-\|3-methyl-2-oxobutanoate-hydroxymethyltransferase	unknown	unknown	gnl\|CDD\|234723
NZ_CP016380.1\|WP_081304483.1\|874036_874477_+\|methylamine-utilization-protein	unknown	unknown	unknown
NZ_CP016380.1\|WP_045789056.1\|873731_873992_+\|DUF3343-domain-containing-protein	unknown	unknown	gnl\|CDD\|378728
NZ_CP016380.1\|WP_065475802.1\|880749_881493_-\|DNA/RNA-nuclease-SfsA	unknown	unknown	gnl\|CDD\|234733
NZ_CP016380.1\|WP_065475810.1\|887926_888442_-\|multidrug-transporter	unknown	unknown	gnl\|CDD\|182471
NZ_CP016380.1\|WP_065475804.1\|882219_884667_+\|ATP-dependent-helicase-HrpB	unknown	unknown	gnl\|CDD\|236950
NZ_CP016380.1\|WP_017411017.1\|877425_878925_-\|polynucleotide-adenylyltransferase-PcnB	unknown	unknown	gnl\|CDD\|236939
NZ_CP016380.1\|WP_039214507.1\|874478_875006_+\|rhodanese-like-domain-containing-protein	unknown	unknown	gnl\|CDD\|238089
NZ_CP016380.1\|WP_011707270.1\|888598_889480_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|223656
NZ_CP016380.1\|WP_041218374.1\|887116_887518_+\|VOC-family-protein	unknown	unknown	gnl\|CDD\|319940
NZ_CP016380.1\|WP_016351879.1\|887618_887939_-\|SMR-family-multidrug-efflux-pump	unknown	unknown	gnl\|CDD\|182618
NZ_CP016380.1\|WP_065475790.1\|871791_872943_+\|2-hydroxyacyl-CoA-dehydratase-subunit-D	unknown	unknown	gnl\|CDD\|224689
NZ_CP016380.1\|WP_065475792.1\|872952_873735_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|129344
NZ_CP016380.1\|WP_029302259.1\|881535_882063_-\|RNA-2',3'-cyclic-phosphodiesterase	unknown	unknown	gnl\|CDD\|274058
NZ_CP016380.1\|WP_011707280.1\|876904_877414_-\|2-amino-4-hydroxy-6--hydroxymethyldihydropteridine-diphosphokinase	unknown	unknown	gnl\|CDD\|223872
NZ_CP016380.1\|WP_065475800.1\|879149_880067_-\|tRNA-glutamyl-Q(34)-synthetase-GluQRS	unknown	unknown	gnl\|CDD\|274810
NZ_CP016380.1\|WP_005304632.1\|870784_871558_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|237896

Protein	Function_ID	Function_description	E-value
NZ_CP016380.1\|WP_005304459.1\|880180_880630_-\|RNA-polymerase-binding-protein-DksA	gnl\|CDD\|182722	PRK10778, dksA, RNA polymerase-binding protein DksA.	7.33054e-78
NZ_CP016380.1\|WP_065475807.1\|884740_887074_+\|penicillin-binding-protein-1B	gnl\|CDD\|273952	TIGR02071, Includes:_Penicillin-insensitive_transglycosylase, penicillin-binding protein 1B. Bacterial that synthesize a cell wall of peptidoglycan (murein) generally have several transglycosylases and transpeptidases for the task. This family consists of a particular bifunctional transglycosylase/transpeptidase in E. coli and other Proteobacteria, designated penicillin-binding protein 1B. [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan].	0
NZ_CP016380.1\|WP_065475798.1\|875070_875928_-\|pantoate--beta-alanine-ligase	gnl\|CDD\|234741	PRK00380, panC, pantoate--beta-alanine ligase; Reviewed.	4.87986e-166
NZ_CP016380.1\|WP_011707281.1\|876113_876908_-\|3-methyl-2-oxobutanoate-hydroxymethyltransferase	gnl\|CDD\|234723	PRK00311, panB, 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed.	1.14416e-163
NZ_CP016380.1\|WP_045789056.1\|873731_873992_+\|DUF3343-domain-containing-protein	gnl\|CDD\|378728	pfam11823, DUF3343, Protein of unknown function (DUF3343). This family of proteins are functionally uncharacterized. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.	2.77559e-08
NZ_CP016380.1\|WP_065475802.1\|880749_881493_-\|DNA/RNA-nuclease-SfsA	gnl\|CDD\|234733	PRK00347, PRK00347, DNA/RNA nuclease SfsA.	1.43708e-132
NZ_CP016380.1\|WP_065475810.1\|887926_888442_-\|multidrug-transporter	gnl\|CDD\|182471	PRK10452, PRK10452, multidrug/spermidine efflux SMR transporter subunit MdtJ.	2.36956e-21
NZ_CP016380.1\|WP_065475804.1\|882219_884667_+\|ATP-dependent-helicase-HrpB	gnl\|CDD\|236950	PRK11664, PRK11664, ATP-dependent RNA helicase HrpB; Provisional.	0
NZ_CP016380.1\|WP_017411017.1\|877425_878925_-\|polynucleotide-adenylyltransferase-PcnB	gnl\|CDD\|236939	PRK11623, pcnB, poly(A) polymerase I; Provisional.	0
NZ_CP016380.1\|WP_039214507.1\|874478_875006_+\|rhodanese-like-domain-containing-protein	gnl\|CDD\|238089	cd00158, RHOD, Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins.	2.24184e-16
NZ_CP016380.1\|WP_011707270.1\|888598_889480_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|223656	COG0583, LysR, Transcriptional regulator [Transcription].	5.10905e-36
NZ_CP016380.1\|WP_041218374.1\|887116_887518_+\|VOC-family-protein	gnl\|CDD\|319940	cd08352, VOC_Bs_YwkD_like, vicinal oxygen chelate (VOC) family protein Bacillus subtilis YwkD and similar proteins. uncharacterized subfamily of vicinal oxygen chelate (VOC) family contains Bacillus subtilis YwkD and similar proteins. The vicinal oxygen chelate (VOC) superfamily is composed of structurally related proteins with paired beta.alpha.beta.beta.beta motifs that provide a metal coordination environment with two or three open or readily accessible coordination sites to promote direct electrophilic participation of the metal ion in catalysis. VOC domain is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.	1.1173e-72
NZ_CP016380.1\|WP_016351879.1\|887618_887939_-\|SMR-family-multidrug-efflux-pump	gnl\|CDD\|182618	PRK10650, PRK10650, multidrug/spermidine efflux SMR transporter subunit MdtI.	3.46635e-18
NZ_CP016380.1\|WP_065475790.1\|871791_872943_+\|2-hydroxyacyl-CoA-dehydratase-subunit-D	gnl\|CDD\|224689	COG1775, HgdB, Benzoyl-CoA reductase/2-hydroxyglutaryl-CoA dehydratase subunit, BcrC/BadD/HgdB [Amino acid transport and metabolism].	7.36036e-140
NZ_CP016380.1\|WP_065475792.1\|872952_873735_+\|hypothetical-protein	gnl\|CDD\|129344	TIGR00241, Uncharacterized_protein_MJ0004, CoA-substrate-specific enzyme activase, putative. This domain is found in a set of closely related proteins including the (R)-2-hydroxyglutaryl-CoA dehydratase activase of Acidaminococcus fermentans, in longer proteins from M. jannaschii and M. thermoautotrophicum that share an additional N-terminal domain, in a protein described as a subunit of the benzoyl-CoA reductase of Rhodopseudomonas palustris, and in two repeats of an uncharacterized protein of Aquifex aeolicus.This domain may be involved in generating or regenerating the active sites of enzymes related to (R)-2-hydroxyglutaryl-CoA dehydratase and benzoyl-CoA reductase.	6.19789e-98
NZ_CP016380.1\|WP_029302259.1\|881535_882063_-\|RNA-2',3'-cyclic-phosphodiesterase	gnl\|CDD\|274058	TIGR02258, UPF0097_protein_AF_2157, 2'-5' RNA ligase. This protein family consists of bacterial and archaeal proteins with two tandem copies of Pfam domain pfam02834. Members for which activity has been measured perform a reversible, ATP-independent 2'-5'-ligation of what is presumably a non-phyiological substrate: half-tRNA splice intermediates from an intron-containing yeast tRNA. The physiological substrate(s) in prokaryotes may include small 2'-5'-link-containing oligonucleotides, perhaps with regulatory or biosynthetic roles. [Transcription, RNA processing].	1.23921e-33
NZ_CP016380.1\|WP_011707280.1\|876904_877414_-\|2-amino-4-hydroxy-6--hydroxymethyldihydropteridine-diphosphokinase	gnl\|CDD\|223872	COG0801, FolK, 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase [Coenzyme metabolism].	4.60743e-67
NZ_CP016380.1\|WP_065475800.1\|879149_880067_-\|tRNA-glutamyl-Q(34)-synthetase-GluQRS	gnl\|CDD\|274810	TIGR03838, queuosine_YadB, glutamyl-queuosine tRNA(Asp) synthetase. This protein resembles a shortened glutamyl-tRNA ligase, but its purpose is to modify tRNA(Asp) at a queuosine position in the anticodon rather than to charge a tRNA with its cognate amino acid. [Protein synthesis, tRNA and rRNA base modification].	1.65135e-157
NZ_CP016380.1\|WP_005304632.1\|870784_871558_+\|ABC-transporter-permease	gnl\|CDD\|237896	PRK15066, PRK15066, inner membrane transport permease; Provisional.	1.55024e-172

>NZ_CP016380.1|WP_017411017.1|877425_878925_-|polynucleotide-adenylyltransferase-PcnB
MASRQFEVITRCTIFSQIANFCRKVLGKEDGEQSAESPIPARVAGQRRTLSRDQHPISRKEISENALKVLYRLNKGGYEAYLVGGGVRDLLLGKTPKDFDIATDATPEQIKSLFSNCRLIGRRFRLAHIVFGRDVIEVATFRGHHHQVNTSKHVSAQSDEGMLLRDNVYGTIEEDAERRDFTVNALYYSAKDFTLHDFEGGLEDLAERKLELIGDPETRYREDPVRMLRAVRFAAKLDMTISPRTAAPIKELAPLLQDIPAARLFEETLKLFLAGDGLATYKLLREYGLFQQLFPQVAALFTPHGNSPYEQFIEQALIDTDTRVREDKRVTPAFLYATLLWGCVEARGRVLENESGLPWYDAFMLAINEVLDNQVRIIAVPRRFTTDVRDIWALQQRLTRRQGRHPERAMEHPKFRAAFDFLLLRNRVERGLGELASWWERYVESNPDVRPQLQREATRRPASGERGQAGEARSNDGEKRSSNSRNRRRPRRRKPKAAE
>NZ_CP016380.1|WP_011707280.1|876904_877414_-|2-amino-4-hydroxy-6--hydroxymethyldihydropteridine-diphosphokinase
MTEVFIAIGSNLSDPLGQARRAVAALARLPGSVLVQASSFYSSRPMGPADQPDYVNAVARLNTRLTPLALLDQLQSIELEQGRVRKDERWGPRTLDLDLLLFGDQIIRHERLIVPHYGMKEREFVLLPLAEIAPALVLPCGTPLAELVARCPHNDLAIIAPGADEQEPL
>NZ_CP016380.1|WP_011707281.1|876113_876908_-|3-methyl-2-oxobutanoate-hydroxymethyltransferase
MSKITTTNLLKMKQEGQRITAITAYDATFAKLFDDEGAHVLLIGDSLGMVLQGGQDTLGVSMDEMVYHTRCVVRGTTNALVVTDMPFMSYATPEQTYQNAARLMAAGARMVKMEGGDWLCDSIRHLTRNGVPVCGHLGLTPQSVHVFGGFKVQGRDEFQAQEIYRQALELQAAGIQLLVLECVPTSLAERISKALRIPVIGIGAGPATDGQILVMHDAFGITSGYVPKFTKNFLAETGDMRAAIRLYVKQVSEGTFPGPEHCFN
>NZ_CP016380.1|WP_065475798.1|875070_875928_-|pantoate--beta-alanine-ligase
MLVVNNPAALREQIGQWRREGLTIAFVPTMGNLHQGHLTLVKEAHHHADKVVTSIFVNPMQFDKAEDLANYPRTLEQDCTALEAAGVDMVFTPTPEIMYPQGLASHTFVEVPGLSSLLEGALRPGHFRGVSTVVTKLFNLVQPDVACFGQKDFQQLALIRKMVADMAMPIQIVGVPTVRAEDGLALSSRNGYLTTAERTLAPELARTMNWIAEQIEAGDHHLPSLVAQASQRLDKAGFRTDAIDIVDAATLEAATDQSEQLVILMAAYLGKARLIDNRVVTLARP
>NZ_CP016380.1|WP_039214507.1|874478_875006_+|rhodanese-like-domain-containing-protein
MMRLQSRTLMASLIAASFALGGCGDNQFEQETKLEQAAVQLSQETQQGGYQLLTVAELKTRMDKGEALVIIDTMPFEDSYKKEHIQGAKNFAFVKEAKSGDDWSQIVEGSGTPEQLLALLGDDKTRPVVFYCGFVKCGRSHNGAAWAVTQGYQQVYRVPGGIFAWKGAGYPVTAE
>NZ_CP016380.1|WP_081304483.1|874036_874477_+|methylamine-utilization-protein
MIKSYPMAVYLRVLTRLALGGFFVASAGFKLAAPELFAEQIGAFGLLWSPFIPLAVWGLVGLELCAGLAVIGNRRWGLWLVVALLALFIPVLGYGIAIGLDISCGCLGRDDLSSLPQALLRDLLLLTLAGALLRHSRPVFTVPKEQ
>NZ_CP016380.1|WP_045789056.1|873731_873992_+|DUF3343-domain-containing-protein
MNAEFLYLFHSTLGTVRLRKRLEQQPHAFRVCDVPRRLSAGCGLAIRLHCPPEEWQQWCQRGETAAVFRCDEDGEYCELARYPAAG
>NZ_CP016380.1|WP_065475792.1|872952_873735_+|hypothetical-protein
MSLTIGIDSGSTATKGILFDHRDGGHIVRRFLVPTPFRPLAAIEQGWETLSAALPERPHLTLTGYGRDLASFADRRVTEISCHGLGARLLCPSVHTVIDIGGQDSKVIQLDGDGNLTDFLMNDKCAAGTGRFLEVITRTLGARVEQLDELLEGAEPHDISSMCTVFAESEAISLRSAGIPAESILAGIVRSMARRSANFIGRLGARPTVLFTGGVSHCATFRHYLAQGLGCDVATHPDAQFAGALGAALFGARARTGGKS
>NZ_CP016380.1|WP_065475790.1|871791_872943_+|2-hydroxyacyl-CoA-dehydratase-subunit-D
MSLITELPAIFDSFSDARRQGFLAVMALKERQIPLVGTYCTFMPQEVAMAAGAVVVSLCSTSDETIEEAEKDLPRNLCPLIKSSYGFGKTDKCPYFYFSDLVVGETTCDGKKKMYEYMAEFKPVHVMQLPNRADDEASRTLWRSEIVRFKALLEQQFGNPISEQALRDAIVLKNRERRALADFYRLGQLNPPALSGTDLLKVVYGATFRFDKEQLISELQEMTRRIKAEYAEGKRLDARPRILITGCPIGGAADKVVRLIEEHGGWVVGYENCTGAKATEQCVSEEGDLFDALTDKYLAIGCSCISPNHQRMKLLSQMVEEYQADGVIDVILQACHTYAVESLAIKRHVRDRHGIPYMAVETDYSSADKGQLATRLAAFIEML
>NZ_CP016380.1|WP_005304632.1|870784_871558_+|ABC-transporter-permease
MNLTTYYIAFKSILAKEISRFTRIWIQTLVPPAITMSLYFVIFGNLIGGRIGDMGGFSYMEFIVPGLIMMSVITNSYSNVASSFFSAKFQRNVEELLVAPVPNYVIIAGYVGGGVARGLCVGLIVTLVSLFFVPLQIHHLFSVCFTVLLTAILFSLGGLINAVFAKTFDDISIIPTFVLTPLTYLGGVFYSISLLPPFWQGVSQVNPIIYMVNAFRYGFLGISDVPLGTAYLIIIGFIVALYGLAWWLISRGTGLRH
>NZ_CP016380.1|WP_065475800.1|879149_880067_-|tRNA-glutamyl-Q(34)-synthetase-GluQRS
MPVNTIPSSQTRPYIGRFAPSPSGPLHFGSLIAALGSFLQARARQGRWLVRIEDIDPPREMAGAAPLILQTLEAYGLQWDGEVMYQSRRHGRYDEIIDQLYRAGDLYWCRCTRREIMASGGFYNGHCRTLGLTAEGCAARLRQHHPVYDFEDGLQGRIAVPAALAEEDFIVRRRDGLYAYNLAVVVDDMDCGITEIVRGADLLEPTVRQIALYQTLDAPVPAWVHLPLAVQADGNKLSKQNHAPALAQDEVRPALWQALHFLGQCPPPELMASRVDEIVDWGIAHWQLARVPASEKITLTAGVNE
>NZ_CP016380.1|WP_005304459.1|880180_880630_-|RNA-polymerase-binding-protein-DksA
MPTGENRKSLGPLAIAGVAPYQEKPGEEYMNDQQKAHFRKILGAWRNQLMQEVDRTVDHMKDEAANFPDPVDRAAQEEEFALELRTRDRERKLIKKIEKTLLLLEDDDFGYCEHCGIEIGIRRLEARPTADLCVDCKTLAEIKEKQMAG
>NZ_CP016380.1|WP_065475802.1|880749_881493_-|DNA/RNA-nuclease-SfsA
MIFDPPLQSGQLISRYKRFLTDVQLDNGEVITIHCANTGAMTGCAEPGTRVWYSTSSNPKRKLPHSWEIAESPAGHFICVNTARANQLTRELIEQDALAPLRGYARLRTEVKYGEENSRIDLLLEDDHRPACYIEVKSVTLLDEREQAGMGYFPDAVTTRGAKHLRELMAMKAAGHRAVLLFMVLHSGIVRMRPAAHIDPHYSLLIEQAITAGVEILCYRPHVGVQSMVAQDFIPFESCHLLPEGSE
>NZ_CP016380.1|WP_029302259.1|881535_882063_-|RNA-2',3'-cyclic-phosphodiesterase
MAKLFFALPAEALAPDLVAWRDQLPWPGQPVPAANLHLTLAFLGEADQLTTTRLMAAVERQHCPPLTIALNETGWFGRAKAAWVGPTEWPNELTVLARALRRHGEKLGLGNGEQGYRPHVTLSRKASEPPALLPAPDFVLQADRFCLYQSLSTPDGVRYEPLACWPLRAREKMAS
>NZ_CP016380.1|WP_065475804.1|882219_884667_+|ATP-dependent-helicase-HrpB
MSSLPIVSVLPALFAAIDNHASVILQAPPGAGKSTLLPLELVRQHRLPGRIIMLEPRRLAARNIAGFLARQLGEKVGERIGLRVRGESRTSAATRLEIVTEGVLTRMLQQDPELTGVSLVIFDEFHERSLHADTALAFAIESQQGLRDDLKLLVMSATLDGMALERLLPEAPVVRSEGRGFPIDYHYRPANRQQWLEPQVGAVVLEALAAHAGSLLVFLPGQGEIERLAQWLEGRLPDEVTLAPLYGRLDMAAQQAAIEPAPAGRRKLVLTTNVAETSLTIEGISVVVDSGQERRASFDIKSGVTRLETRPIAKSSATQRAGRAGRLGPGVCYRLWSSEVQERLAEQSPPDILTQELTGLLLDAAQWGAKVEELPLLDMPPAAAVASAQRLLVALGAMKPEGEQQLTPAGRAMAAFGTHPRLARMLLRARELEAEGLTGIVADAAFLVALLEEDLRGSERLSVLFHRRQGALRQSATRWFERLGARPASAQGQWLGLLCALAWPDRIGKLRSGSRYQLSGGVSCDLVEGHPCQGQGALIAIEMGQNERGSRIFIAEPVELDELVRQLPELVGERQWFDWDEREERVRAERQQVLGELVLSQRPLTDLSDEQKGRCLLQGIRRKGLHVLPWDDASEGLLARLRCARDWLPDEGWPAMDEASLLADLEQWLLPAVSGMTRLEQLKKLDMSDILRQSLPWPLPKRLDEALPGHFSAPTGSRVRIRYQPGQAPVIPVRIQEMFGQAATPCVADGRVALVVELLSPAQRPLQITADLAAFWAGSYELVKKEMKGRYPRHYWPDNPLEAMPTRVTKKKMGL
>NZ_CP016380.1|WP_065475807.1|884740_887074_+|penicillin-binding-protein-1B
MATQRRKRTPKKAAPKRTIWRTLFWLGFKLSLVGAAFMVVFGIYLDTKVRERFDGEKWQLPVMVYSRPLELYPSQRLSQAQMLRELNMLSYKQVRQPHTPGEYAVSGNRIELIRRPFEFHDGADAARGLRLTFNGARLEGIQSLENQRQLGYAQMDPVLLDRLNTEDREDRLLVRIAEVPDSLLITLLTTEDRDFYQHGGVSPVAIMRAMAANLLAGRTVQGGSTLTQQLAKNFFLTRERSLWRKAQEAYMAVLIDYRYSKDEILEAYLNEVYLGQNFSQGVYGFGLASYFYFGIPVNELDIDQVALLVGMVKGPSYYDPWRFPERAKARRDLVLKLLMDHGSLQPAEYELASKQPLGIITRGQMSYGRTPAFMGLLKREIQSRFGPDLLKQSGLKIFTSLDPIAQHAAEQAVESGLAQIEKLRGKKKLEAAMVVSDWHKGEVVAMVGGRDPRYAGFNRALDARRQIGSLVKPAVYLTGLSNGLTLGTPLKDQPIRIRGKDGQIWTPQNYDRKFRQSVPLMDALASSLNVPTVNLGLQVGLDKVVDTLHKLGVEQEIQPYPSLVLGAVALSPMEVNQMYLPIANQGLTQPLSAIRAVVNSDGSKLYQHDEAAKRVTDEQASWLTLFAMTKTVSQGTARALGAKFPGATMAAKTGTTNELRDSWFTGLDNNELVSIWVGRDDNTPAGLTGASGALQLFSGYMSQRGVNSLAMNMPQGVSWASFSRASGTRVTSDCPGSLQVPAKLAGLAEPMGCASPVSSPVSSPANALDNWFNGFFN
>NZ_CP016380.1|WP_041218374.1|887116_887518_+|VOC-family-protein
MSHPLFDAIHHVAIIASDYARSRHFYHQVLGLPIIAETLREERQSWKLDLALPDGSQLELFSFPAPPPRPSRPEACGLRHLAFRVAELDRVIAHLQGHGVEVEPVRVDELTGKRFTFFADPDGLPLELYEAGR
>NZ_CP016380.1|WP_016351879.1|887618_887939_-|SMR-family-multidrug-efflux-pump
MHPLIIVLGAALLDIGANMAINRSVGFRHKGWGFLGILLVLCAFTLLSEAVSTGRIDLAVAYATWGAIGILGTALGGLLLFGERLKPIGWVGMLVMAVAVTLLTTA
>NZ_CP016380.1|WP_065475810.1|887926_888442_-|multidrug-transporter
MLFNRMLLARIFLTGAILTEVAGTSSMAMIPENEAGWLNYLPMWLLISFSYLLLAKAAKTISIGIAFALWEGLGIALITVVSVLFLDYHLNAQELIGLALAIVGIVLVTMGETHDEPTTGTGSIRRLGAAHDKPAAGTGSTRRLGAVYDKAAAGTGSTRSLGAAKEAVCTR
>NZ_CP016380.1|WP_011707270.1|888598_889480_+|LysR-family-transcriptional-regulator
MKLYQIQLFVESASSGSIANTARRLGKSRSAVSTAIAALEVELGVELFERGANQSRLTEIGEQVLDDCKRLLQAANSLKLKCEHYASGAEVALRVARDDAIPEAVWREMLGALRHQFPGTSISLVLASPPELPALVEEGFVDAAFGLITEEQERSGLNIEVLNPIRTLMVVAPSHPLASLKRVLQQDLTGHTQVTLSYVDEFSVKSLLPIGGHHIGLSSFELMRDAVLDGLGWAVLPSPLIQSQLRQGELLTLKHKFSLQWRDYGVYLSENAYHGKVLAWLRKAIQAYLEPFE

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Crispr_ID: NZ_CP016380_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP016380_6

1743972-1744171

Orphan

Consensus_repeat	Method
GACATGCGCTGGCGATGCTTGGTGTAATCCTGCGCTTTGGCTAGAATA	PILER-CR

2 spacers

The CRISPR arrays of NZ_CP016380_6

>merge|NZ_CP016380|6|1743972-1744171|PILER-CR
GACATGCGCTGGCGATGCTTGGTGCAATCCTGCGCTTTGGCGGGAATAACGGCCGTCATTTCCCGCCTTGGTGATGGGCACCGCTTGGTGTAATCCTGCGCTTTGGCTAGATTTGGCTGGGAGAGCGACCGTCATTTCCTGTCTTGGCGAGGGACATGCGCTGGCGATGCTTGGTGTAATCCTGCGCTTTGGCTAGAATA

>NZ_CP016380|6|1|1743972-1744171|PILER-CR
GACATGCGCTGGCGATGCTTGGTGCAATCCTGCGCTTTGGCGGGAATA	ACGGCCGTCATTTCCCGCCTTGGTGATGGGCACC
GCTTGGTGTAATCCTGCGCTTTGGCTAGATTTGGCTGGGAGAGCGACC	GTCATTTCCTGTCTTGGCGAGGGACATGCGCTGGCGATGCT
TGGTGTAATCCTGCGCTTTGGCTAGAATA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP016380.1\|WP_011706577.1\|1751232_1751787_+\|CDP-diacylglycerol--glycerol-3-phosphate-3-phosphatidyltransferase	unknown	unknown	gnl\|CDD\|182763
NZ_CP016380.1\|WP_187172467.1\|1737387_1738185_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP016380.1\|WP_011706579.1\|1748253_1748898_+\|UvrY/SirA/GacA-family-response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|236538
NZ_CP016380.1\|WP_065476823.1\|1752439_1752772_+\|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	unknown	unknown	gnl\|CDD\|368831
NZ_CP016380.1\|WP_011706581.1\|1747094_1747283_+\|Trm112-family-protein	unknown	unknown	gnl\|CDD\|183328
NZ_CP016380.1\|WP_065476805.1\|1735451_1736228_+\|alpha/beta-fold-hydrolase	unknown	unknown	gnl\|CDD\|211851
NZ_CP016380.1\|WP_065476816.1\|1745970_1746972_+\|tetraacyldisaccharide-4'-kinase	unknown	unknown	gnl\|CDD\|234808
NZ_CP016380.1\|WP_065476809.1\|1739049_1740558_-\|DUF853-family-protein	unknown	unknown	gnl\|CDD\|283518
NZ_CP016380.1\|WP_065476818.1\|1747279_1748041_+\|3-deoxy-manno-octulosonate-cytidylyltransferase	unknown	unknown	gnl\|CDD\|235473
NZ_CP016380.1\|WP_162493503.1\|1741625_1743917_+\|DNA-internalization-related-competence-protein-ComEC/Rec2	unknown	unknown	gnl\|CDD\|236924
NZ_CP016380.1\|WP_011706585.1\|1741169_1741688_-\|DUF2062-domain-containing-protein	unknown	unknown	gnl\|CDD\|378263
NZ_CP016380.1\|WP_065476811.1\|1740681_1741176_-\|DUF2062-domain-containing-protein	unknown	unknown	gnl\|CDD\|378263
NZ_CP016380.1\|WP_065476826.1\|1754408_1754771_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP016380.1\|WP_011706583.1\|1744201_1745971_+\|lipid-A-ABC-transporter-ATP-binding-protein/permease-MsbA	unknown	unknown	gnl\|CDD\|183016
NZ_CP016380.1\|WP_017410450.1\|1738686_1738977_+\|Bor-family-protein	unknown	unknown	gnl\|CDD\|368828
NZ_CP016380.1\|WP_065476803.1\|1734310_1735387_+\|molybdenum-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|131197
NZ_CP016380.1\|WP_065476807.1\|1736348_1737374_+\|StbA-family-protein	unknown	unknown	gnl\|CDD\|310773
NZ_CP016380.1\|WP_065476821.1\|1749086_1750937_+\|excinuclease-ABC-subunit-UvrC	unknown	unknown	gnl\|CDD\|234792
NZ_CP016380.1\|WP_065476825.1\|1752773_1753058_+\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|225495
NZ_CP016380.1\|WP_065480519.1\|1738218_1738512_+\|Bor-family-protein	unknown	unknown	gnl\|CDD\|368828

Protein	Function_ID	Function_description	E-value
NZ_CP016380.1\|WP_011706577.1\|1751232_1751787_+\|CDP-diacylglycerol--glycerol-3-phosphate-3-phosphatidyltransferase	gnl\|CDD\|182763	PRK10832, PRK10832, CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase.	2.33554e-83
NZ_CP016380.1\|WP_011706583.1\|1744201_1745971_+\|lipid-A-ABC-transporter-ATP-binding-protein/permease-MsbA	gnl\|CDD\|183016	PRK11176, PRK11176, lipid A ABC transporter ATP-binding protein/permease MsbA.	0
NZ_CP016380.1\|WP_011706579.1\|1748253_1748898_+\|UvrY/SirA/GacA-family-response-regulator-transcription-factor	gnl\|CDD\|236538	PRK09483, PRK09483, response regulator; Provisional.	3.35889e-165
NZ_CP016380.1\|WP_065476823.1\|1752439_1752772_+\|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	gnl\|CDD\|368831	pfam06296, RelE, RelE toxin of RelE / RelB toxin-antitoxin system. RelE is a family of Gram-negative bacterial antitoxins of the RelE/RelB toxin-antitoxin system. Its cognate antitoxin is family RelB, pfam04221.	8.2784e-06
NZ_CP016380.1\|WP_011706581.1\|1747094_1747283_+\|Trm112-family-protein	gnl\|CDD\|183328	PRK11827, PRK11827, protein YcaR.	4.72507e-22
NZ_CP016380.1\|WP_065476805.1\|1735451_1736228_+\|alpha/beta-fold-hydrolase	gnl\|CDD\|211851	TIGR03611, RutD, pyrimidine utilization protein D. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the hydrolase, alpha/beta fold family defined by pfam00067.	7.9012e-25
NZ_CP016380.1\|WP_065476816.1\|1745970_1746972_+\|tetraacyldisaccharide-4'-kinase	gnl\|CDD\|234808	PRK00652, lpxK, tetraacyldisaccharide 4'-kinase; Reviewed.	4.54698e-172
NZ_CP016380.1\|WP_065476809.1\|1739049_1740558_-\|DUF853-family-protein	gnl\|CDD\|283518	pfam05872, DUF853, Bacterial protein of unknown function (DUF853). This family consists of several bacterial proteins of unknown function. BMEI1370 is thought to be an ATPase.	0
NZ_CP016380.1\|WP_065476818.1\|1747279_1748041_+\|3-deoxy-manno-octulosonate-cytidylyltransferase	gnl\|CDD\|235473	PRK05450, PRK05450, 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional.	2.36388e-154
NZ_CP016380.1\|WP_162493503.1\|1741625_1743917_+\|DNA-internalization-related-competence-protein-ComEC/Rec2	gnl\|CDD\|236924	PRK11539, PRK11539, ComEC family competence protein; Provisional.	9.2926e-116
NZ_CP016380.1\|WP_011706585.1\|1741169_1741688_-\|DUF2062-domain-containing-protein	gnl\|CDD\|378263	pfam09835, DUF2062, Uncharacterized protein conserved in bacteria (DUF2062). This domain, found in various prokaryotic proteins, has no known function.	3.616e-46
NZ_CP016380.1\|WP_065476811.1\|1740681_1741176_-\|DUF2062-domain-containing-protein	gnl\|CDD\|378263	pfam09835, DUF2062, Uncharacterized protein conserved in bacteria (DUF2062). This domain, found in various prokaryotic proteins, has no known function.	1.72875e-29
NZ_CP016380.1\|WP_065476825.1\|1752773_1753058_+\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|225495	COG2944, COG2944, Predicted transcriptional regulator [Transcription].	9.50295e-13
NZ_CP016380.1\|WP_017410450.1\|1738686_1738977_+\|Bor-family-protein	gnl\|CDD\|368828	pfam06291, Lambda_Bor, Bor protein. This family consists of several Bacteriophage lambda Bor and Escherichia coli Iss proteins. Expression of bor significantly increases the survival of the Escherichia coli host cell in animal serum. This property is a well known bacterial virulence determinant indeed, bor and its adjacent sequences are highly homologous to the iss serum resistance locus of the plasmid ColV2-K94, which confers virulence in animals. It has been suggested that lysogeny may generally have a role in bacterial survival in animal hosts, and perhaps in pathogenesis.	4.20582e-32
NZ_CP016380.1\|WP_065476803.1\|1734310_1735387_+\|molybdenum-ABC-transporter-ATP-binding-protein	gnl\|CDD\|131197	TIGR02142, Molybdenum_import_ATP-binding_protein_ModC, molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. [Transport and binding proteins, Anions].	1.71518e-89
NZ_CP016380.1\|WP_065476807.1\|1736348_1737374_+\|StbA-family-protein	gnl\|CDD\|310773	pfam06406, StbA, StbA protein. This family consists of several bacterial StbA plasmid stability proteins.	5.68603e-103
NZ_CP016380.1\|WP_065476821.1\|1749086_1750937_+\|excinuclease-ABC-subunit-UvrC	gnl\|CDD\|234792	PRK00558, uvrC, excinuclease ABC subunit UvrC.	0
NZ_CP016380.1\|WP_065480519.1\|1738218_1738512_+\|Bor-family-protein	gnl\|CDD\|368828	pfam06291, Lambda_Bor, Bor protein. This family consists of several Bacteriophage lambda Bor and Escherichia coli Iss proteins. Expression of bor significantly increases the survival of the Escherichia coli host cell in animal serum. This property is a well known bacterial virulence determinant indeed, bor and its adjacent sequences are highly homologous to the iss serum resistance locus of the plasmid ColV2-K94, which confers virulence in animals. It has been suggested that lysogeny may generally have a role in bacterial survival in animal hosts, and perhaps in pathogenesis.	1.52536e-20

>NZ_CP016380.1|WP_162493503.1|1741625_1743917_+|DNA-internalization-related-competence-protein-ComEC/Rec2
MLVFLECRRIRQPALYESFGHIETLLNTCTMDLRLLSFALGASSSLLWPWLPSWEWGGLMLLLAFPLAGYRCWRLLFLLCGILWMQGSLHYRLAWLDQLGKKTSHIITAQLQSAEPEGDKFIRLVLRVNRLDEQALTPAPLVRINAYQALPAMTAGSRLTLVVSLKPVHGLANEAGMDGRRLLLGKGITATGNLRRVIQIEPAQTGLRERWLARAAASWQDLSQGPLLAALTFGEQGGITDEQWSLFRGSGLTHIIAISGQHIALVAVLGWWLGRLFGLRGAILVALLFAALYSWLAGFAVATERALIMVLVWSLLRWRRREWPAHRIWLWAFVVLTLWDPFALYSAGFWLSFLAVALLLVASLLEAKPGLIRLQGLLLLGLLPLQLALFEGIAPLSLLLNLLALPLFCIGIIPLALIGVLLAPLSGELAHLLFWLADVGLQWVLWALARLASQWQLWWPVPGWVLPLTALLTLLWCAWHVPGGRPLLLPGSVALLLAAWPAPTHWQLRVLDVGQGLAVLITRGERGILFDTGDRYPGGYNMADAVILPLLNRLDVRVLDYLVISHKDRDHAGNRRAILQALPVRHELSSFDFGRFTTLCRRGQQWRWQGLEMAVLWPQQPGPGHNNDGCVLQIRDGERRILLSADIERQAEQRLLALEGEGLASTLLVSPHHGSRTSSTAPFVAAVAPRYVVHSAGFMNQWGFPRPEVVARYQEAQQWVTGLDGEILVEPTPDGLRIRAEREQGPWFRRHGDWWRPAFWPDR
>NZ_CP016380.1|WP_011706585.1|1741169_1741688_-|DUF2062-domain-containing-protein
MPKRLIQRWLPDPATLKEHKHLRLFGKLLLDANLWHLNRRSAAGAFAVGLFMAWVPLPCQMLLAAGGAIACRVNLPLSVALVWLSNPFTMPPLFYGAYLTGCQLLGQSSQHIEIEFTWAWLVSVFETVAPPLLLGSLVLALLSSLIGYALIRTCWRISTVRQWQKRKVARAC
>NZ_CP016380.1|WP_065476811.1|1740681_1741176_-|DUF2062-domain-containing-protein
MLNRWFARIKIDPDTLRQQKWFSLFGERLLAPALWQGGPRALSGAVAAGIFACWFPIPMHSLIAVGLALAFSLNLPLALLAVWFNNPLTLPFMYLYAYRTGCLVLHKTPEPFHLSWTLHWLEHEAATLVPPFLLGSLLLAVLTAASGGLLTLLLLRLGKLVRSR
>NZ_CP016380.1|WP_065476809.1|1739049_1740558_-|DUF853-family-protein
MAEPLTLAHANGHPLALLPAMANRHGLITGATGTGKTVTLQVLAEGFSRLGVPVFLADVKGDLSGLGAAGAGSAKLDARLAQLGIAAPAFAANPTLFWDLFAEQGHPVRATVSDMGPLLLARLLGLNDTQSGVLELVFKVADDEGLLLLDLKDLRAMVQFAGDNAKSLTTRYGNVSTASIGAILRNLLTLESAGGDHFFGEPMLDIQDLLQTDEAGHGHINVLAASKLTQSSRLYACFLLWLLSELFEQLPEVGDPDKPVLVFFFDEAHLLFNDAPKALLEKIELVVRLIRSKGVGVYFVTQSPADIPDSVLGQLGNRVQHALRAFTPSDQKAVRIAANTLRANPAFDAAGVITELGVGEALVSLLDEKGRPSMVERAFIAPPASRIGPLSDAERQALIQGSLLHGRYETPEDRESAFERLNGGKVTTTGEQGNEPSSSGEGGLLDALNGILFGRTGPRGGQHDGVVQTAAKSVARTIGSEVGRQLVRGVLGSLLGGGKRRR
>NZ_CP016380.1|WP_017410450.1|1738686_1738977_+|Bor-family-protein
MKKMVLTAAVAMMMAGCAQQGFTVHSGNAVKPTKEVTHHFFISGLGQSKTIDAAAVCNGADKVVRVEAQHTFLNGLLGAVTFGVYTPREARVYCAG
>NZ_CP016380.1|WP_065480519.1|1738218_1738512_+|Bor-family-protein
MKKIVWIACSVLLLSGCAQQTFFVHEGNPGQPTREVSHDFVLAGIGQSEMVDAALACHDDPQKVVRVEMQQSPQDTLMTVLTLGIYTPRTARVYCRL
>NZ_CP016380.1|WP_187172467.1|1737387_1738185_+|hypothetical-protein
MTFSIYMDPGALESDRYAVGVLQNWYQRARKIQDGSEEFDFSKSRFHKDIYLSGMFMYVLAPNLCKAIANALGPEQVSMATLRHAFASCGFNLGEGSASAQPAADLMIEQIVARLSPRLGQSDTGGLVDEIVQRLGQQAAVSSSDSLVEEIVSRLGEQQPTELWDELRQGMPAHLDHEQLAEAIVGKLPSAAGEQDLAPLQSSIQQLSRQLEEQSRLIREQHRLIQRLASAPGRQMTAAGDTEPLVEDLSNQVANMKKVKAKGIF
>NZ_CP016380.1|WP_065476807.1|1736348_1737374_+|StbA-family-protein
MAIDDGSTNVKVSWIENKVLKTIISPNSFRKDWKSAALRKDKKIYNYEIGNTKYTYDATSDKSLATTHVEYQYDDLNLLSVHHALLQTGVTPCDVAITVTLPITEFYNPDDCQRNEDKIEKKRRNLMRAISLNKGELFNIVSVEVMPESLPAALSRLIGSGCNEFTKTLVIDCGGTTLDMGIIVGEFDDVSDVYGNNEIGVSMVTDAVRKALAAADSDSSYLVANEFIKRRHDMSFVRDVVNDESQISKILEKMQNKIDELGSQVAHEAKKFAKNPNRVYLVGGGASLIHEAIKNAYPTLGDRVELLDDAQSALAREICLYTTEEEEVYREAAVMAEVGDE
>NZ_CP016380.1|WP_065476805.1|1735451_1736228_+|alpha/beta-fold-hydrolase
MRRNQVMKSNGLALRSAGEGSLLLLLHGLGSSSLDWQAQIERFSEHYRVVALDLRGHGQSMQEGPFDVATLAADVVNWLDEQPEPAWVVGLSLGAMVALELALQLPHKVQGLVLVNGFSEFLLETPKEQERFAQRLKWLRWFGLRPLAWWLGRELFPGPDLAQVRHTFRLRFVRNKKKTYKALLEALPGWSVRARLGNIWQPVAIISTSHDYLPLAKRVEQFASLPNATIHTPNGHHAWPAEDPSGFNHLLHRILETH
>NZ_CP016380.1|WP_065476803.1|1734310_1735387_+|molybdenum-ABC-transporter-ATP-binding-protein
MSNTRKAQPLLLKAKRAFGAFTLDCELSLELGGILALFGPSGCGKSSLLRIIAGLDRAPGDKLNWQGRALSELLPEARRIGLVFQDSRLFPHLSVLGNLQLAARKGRGRWLPEALATRLGCAELLPQPAHGLSGGQRQRVALARALLAEPDLLLLDEPFSALDRRSRIHQAHVLKGLQQESGIPMIFVSHAMEEVSLLCDQLVLLADGRVEAQGRPSEIFARTDLSLASRDDAGVMLAATLSHYDDDEQMATLQLGEQLLRVTMTQVPDDGGPLQIKVAGRDVVIATAPIEHSSLSNCLTTRLLAEREVRPGQTLLQLALGQQILLARITSRSARRLALAPNQQIYAYIKAVSLVSEG
>NZ_CP016380.1|WP_011706583.1|1744201_1745971_+|lipid-A-ABC-transporter-ATP-binding-protein/permease-MsbA
MQQETSQDSWPVFKRLLGYVRDRKLGLIGGIIGMLGYAAVDTTFVYSIKPLIDQGINGNDPTVLKWMPFFVLGIVALRGVANFLSNYCMAWVGNHVVMRLQQQVFNHMVAMPMSFFDRQNTGHLLSKVTYDASQVSSAASTTLVTLVREGATVIGLLGLMFWHSWQLSVIFLVVGPVVGIIIGLISRRFRQISRHIQQAVGDITTSTEQMLKGHKEVLMFGGQKVEEKRFFKVSNNMRQQTMKMVAADAIGSPVVQMVASIALAAFLYVATIDSVRSELTAGTFTVMITSMMMLLKPLKSLTDVNNQFQRAITACHSLFGLLDTEPEQDTGTRTLERARGEIEFRNVTFTYPTKDTPALHNVSFKVEAGKSVALVGRSGSGKSTIASLLTRFYDIEQGEILLDGVNIRDYRLSELRKQYALVSQHVHLFNDTVASNIAYAAEEKYSLDEIKQAARIAHADEFVSKMSNGYDTVVGENGASLSGGQRQRIAIARALLRDAPVLLLDEATSALDTESERHIQAAIDELCKARTSLVIAHRLSTIEKADEILVIDEGHIVERGNHAALMAQQGTYAQLRAIQFGHATAGGNA
>NZ_CP016380.1|WP_065476816.1|1745970_1746972_+|tetraacyldisaccharide-4'-kinase
MLERLWYAKSGWRWLMAPFALLFAVISGTRRYAYRHGWRKGYRASVPVIVVGNISVGGNGKTPVVVWLVEQLQARGYRPGVVSRGYGGKAPHYPYRLDAASTTAQAGDEPVLIARRCGCPVVVAPRRADAVRLLEQSGEVDIIITDDGLQHYALARDIELVVVDGARRFGNACLLPMGPLREPVTRLKRVDAIICNGGEPGRGEYPMQLVADSLRRVRDEAPLAMPLAGPVDALAGIGHPPRFFATLEGLGYQLDQRVAYGDHHPFDRDELVGRFAGKPLLMTEKDAVKCRAFALDNWWYLPVSAELPASLLDTLLHKLGASGKGQGATKAQG
>NZ_CP016380.1|WP_011706581.1|1747094_1747283_+|Trm112-family-protein
MALDIKLLDIIACPVCKGKLHYNKAVHELVCRFDKLAYPLEEGIPVLLENRARPLSSDELSS
>NZ_CP016380.1|WP_065476818.1|1747279_1748041_+|3-deoxy-manno-octulosonate-cytidylyltransferase
MSFVVVIPARYASTRLPGKPLADIHGKPMVQHVVEKALLSGADRVIVATDDERVQQALAACAGQAGFEVCMTSKDHQSGTERLAEVCRHYGFAADTIVVNVQGDEPLIPPVIIRQVADNLAAATAPMATLSVPIQDAEEVFNPNAVKVVTDQEGYALYFSRASIPWDRDRFAANREQIGDHYQRHIGIYAYRAGFIQRYVDWAPSALEQVEALEQLRVLWYGEKIHVAQALEAPPVGVDTQADLDKVRALLAN
>NZ_CP016380.1|WP_011706579.1|1748253_1748898_+|UvrY/SirA/GacA-family-response-regulator-transcription-factor
MINVFLVDDHELVRTGIRRILEDVRGIKVVGEAQSGETAVTFCRQHHPDVILMDMNMPGIGGLEATRKILRIRPDVRIIVLTIHSENPFPTKVMQAGAAGYLTKGAAPDEMIHAIRLVHSGQRYISPEIAQQMALSQFASADENPFKSLSERELQIMMMITKGQKVTDISEQLNLSPKTVNSYRYRLFSKLNINGDVELTHLAIRYGMLDADTL
>NZ_CP016380.1|WP_065476821.1|1749086_1750937_+|excinuclease-ABC-subunit-UvrC
MTSSEPLFDSKAFLSAVTHQSGVYRMYDSGGTVIYVGKAKDLKKRLASYFRANVDSIKTRTLVRQIADVQVTVTHTETEALILEHNLIKQYQPRYNVLLRDDKSYPWIIITAHQHPRIGVHRGARKVKGEYFGPYPSGGAVRESLHLMQKIFPVRQCEDAVYANRSRPCLLYQLKRCAGPCVTGLVSEAEYAQQVELAKLFLAGKNQQVIGELVGKMESASGDLRFEEAARYRDQIQALRRVTEQQSVSGNVLDELDVVGVAFEQGTACIHVLFIRQGKVLGSRSYFPKVPADTQLDEVVQSFLLQFYLSGQGGRQIPSEVLLDVALEDENVIAETLSQTAGYKVRVVSRTRAERARFIKLASINAQTALRSRLAHKSTTTARYDQLEELLELERPIARMECFDISHTMGERTVASCVVFNREGLLSSEYRRFNIDGITGGDDYAAMEQALERRFGKQQEPDKVPDVLFIDGGLGQLRRAEEILARQLEFLGGKYPLLVGIAKGVTRKAGLETLILGESHEELHLPADMPALHLIQHIRDESHRFAITGHRARRAKARTTSTLEDIPGVGPKRRQALLKYLGGLQEVKKAGVEELAKVPGISQELAQSIHDALHSL
>NZ_CP016380.1|WP_011706577.1|1751232_1751787_+|CDP-diacylglycerol--glycerol-3-phosphate-3-phosphatidyltransferase
MTNIPNLLTFFRILLIPVFVILFYLPYQWSYLAAAIVFILAAATDWFDGYLARKLNQSTAFGAFLDPVADKIMVAAALVVIVEHYNTIWVTIPAMTMIGREIIISALREWMAELGKRSSVAVSWIGKWKTMIQMVSLTGLIWQYDIWMVWLAYVLLYVATVLTFWSMFQYMKAAWGDLTYHSRF
>NZ_CP016380.1|WP_065476823.1|1752439_1752772_+|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin
MSHAIEFIETSMFTKQIKALATDDELRALQTELIAQPEKGDLIKGTGGLRKVRMATGLQGKSGSARVIYFLSTVETIYLVLAYAKSEKESLTAAEKAELRELTKLLKGRG
>NZ_CP016380.1|WP_065476825.1|1752773_1753058_+|helix-turn-helix-domain-containing-protein
MNMFDELKASLEEAVEIKQGRVEPAARTKYEVADVKAIRLALKVSQQEFAQALGTSVDTVKSWETQRRNPTGLAAKVLTLMKEKPDLYSELAAH
>NZ_CP016380.1|WP_065476826.1|1754408_1754771_+|hypothetical-protein
MAQSLADIDLCEALSDLFVDNEVDFELIAQVARGFPVAHVEMVLFEWVAPVCYTNTLTPVPPIWTGFERDSLWAEIQCLLAREAKAGFAKKLSIMLRQFYLKQLFAEEWRRLSVLLVGKE

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Crispr_ID: NZ_CP016380_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP016380_7

1862864-1862948

Orphan

Consensus_repeat	Method
ATGGCGCGAAAGGCCGGATGGCGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP016380_7

>merge|NZ_CP016380|7|1862864-1862948|CRISPRCasFinder
ATGGCGCGAAAGGCCGGATGGCGGGGCCGGTCTACAGGAGAGCTATTTGATCAACGCCAGAATGGCGCGAAACGCCGGATGGCGG

>NZ_CP016380|7|6|1862864-1862948|CRISPRCasFinder
ATGGCGCGAAAGGCCGGATGGCGG	GGCCGGTCTACAGGAGAGCTATTTGATCAACGCCAGA
ATGGCGCGAAACGCCGGATGGCGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP016380.1\|WP_065476913.1\|1857272_1859654_-\|glycoside-hydrolase-family-3-protein	unknown	unknown	gnl\|CDD\|185053
NZ_CP016380.1\|WP_065476906.1\|1848717_1849275_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP016380.1\|WP_029300114.1\|1849331_1850036_+\|SIMPL-domain-containing-protein	unknown	unknown	gnl\|CDD\|236840
NZ_CP016380.1\|WP_005302533.1\|1852400_1853213_-\|kinase/pyrophosphorylase	unknown	unknown	gnl\|CDD\|235419
NZ_CP016380.1\|WP_005302537.1\|1850284_1851661_-\|amino-acid-permease	unknown	unknown	gnl\|CDD\|182324
NZ_CP016380.1\|WP_065476911.1\|1856199_1857177_+\|AraC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197666
NZ_CP016380.1\|WP_065476922.1\|1864973_1865336_-\|VOC-family-protein	unknown	unknown	gnl\|CDD\|319923
NZ_CP016380.1\|WP_065476925.1\|1867751_1868882_+\|4-phosphoerythronate-dehydrogenase	unknown	unknown	gnl\|CDD\|240635
NZ_CP016380.1\|WP_065476917.1\|1860551_1862426_-\|S8-family-serine-peptidase	unknown	unknown	gnl\|CDD\|173789
NZ_CP016380.1\|WP_041216570.1\|1866681_1867404_-\|phosphatase-PAP2-family-protein	unknown	unknown	gnl\|CDD\|182658
NZ_CP016380.1\|WP_065476916.1\|1860075_1860534_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|375918
NZ_CP016380.1\|WP_044800289.1\|1864307_1864898_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|376158
NZ_CP016380.1\|WP_065476927.1\|1869023_1870040_+\|aspartate-semialdehyde-dehydrogenase	unknown	unknown	gnl\|CDD\|237845
NZ_CP016380.1\|WP_029300144.1\|1872692_1873502_+\|tRNA-pseudouridine(38-40)-synthase-TruA	unknown	unknown	gnl\|CDD\|234577
NZ_CP016380.1\|WP_065476924.1\|1865779_1866610_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|270317
NZ_CP016380.1\|WP_065476929.1\|1870315_1872514_+\|pilus-assembly-protein-FimV	unknown	unknown	gnl\|CDD\|274615
NZ_CP016380.1\|WP_065476910.1\|1853521_1855900_+\|phosphoenolpyruvate-synthase	unknown	unknown	gnl\|CDD\|235809
NZ_CP016380.1\|WP_065476908.1\|1852023_1852311_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP016380.1\|WP_065476920.1\|1863460_1863835_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP016380.1\|WP_147822854.1\|1864085_1864292_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP016380.1\|WP_065476913.1\|1857272_1859654_-\|glycoside-hydrolase-family-3-protein	gnl\|CDD\|185053	PRK15098, PRK15098, beta-glucosidase BglX.	3.43547e-65
NZ_CP016380.1\|WP_029300114.1\|1849331_1850036_+\|SIMPL-domain-containing-protein	gnl\|CDD\|236840	PRK11087, PRK11087, oxidative stress defense protein; Provisional.	7.23205e-82
NZ_CP016380.1\|WP_005302533.1\|1852400_1853213_-\|kinase/pyrophosphorylase	gnl\|CDD\|235419	PRK05339, PRK05339, pyruvate, phosphate dikinase/phosphoenolpyruvate synthase regulator.	1.81424e-125
NZ_CP016380.1\|WP_005302537.1\|1850284_1851661_-\|amino-acid-permease	gnl\|CDD\|182324	PRK10238, PRK10238, aromatic amino acid transporter AroP.	0
NZ_CP016380.1\|WP_065476911.1\|1856199_1857177_+\|AraC-family-transcriptional-regulator	gnl\|CDD\|197666	smart00342, HTH_ARAC, helix_turn_helix, arabinose operon control protein.	9.09459e-19
NZ_CP016380.1\|WP_065476922.1\|1864973_1865336_-\|VOC-family-protein	gnl\|CDD\|319923	cd07262, VOC_like, uncharacterized subfamily of vicinal oxygen chelate (VOC) family. The vicinal oxygen chelate (VOC) superfamily is composed of structurally related proteins with paired beta.alpha.beta.beta.beta motifs that provide a metal coordination environment with two or three open or readily accessible coordination sites to promote direct electrophilic participation of the metal ion in catalysis. VOC domain is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.	2.39942e-35
NZ_CP016380.1\|WP_065476925.1\|1867751_1868882_+\|4-phosphoerythronate-dehydrogenase	gnl\|CDD\|240635	cd12158, ErythrP_dh, D-Erythronate-4-Phosphate Dehydrogenase NAD-binding and catalytic domains. D-Erythronate-4-phosphate Dehydrogenase (E. coli gene PdxB), a D-specific 2-hydroxyacid dehydrogenase family member, catalyzes the NAD-dependent oxidation of erythronate-4-phosphate, which is followed by transamination to form 4-hydroxy-L-threonine-4-phosphate within the de novo biosynthesis pathway of vitamin B6. D-Erythronate-4-phosphate dehydrogenase has the common architecture shared with D-isomer specific 2-hydroxyacid dehydrogenases but contains an additional C-terminal dimerization domain in addition to an NAD-binding domain and the "lid" domain. The lid domain corresponds to the catalytic domain of phosphoglycerate dehydrogenase and other proteins of the D-isomer specific 2-hydroxyacid dehydrogenase family, which include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence.	0
NZ_CP016380.1\|WP_065476917.1\|1860551_1862426_-\|S8-family-serine-peptidase	gnl\|CDD\|173789	cd04059, Peptidases_S8_Protein_convertases_Kexins_Furin-like, Peptidase S8 family domain in Protein convertases. Protein convertases, whose members include furins and kexins, are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad that is not homologous to trypsin. Kexins are involved in the activation of peptide hormones, growth factors, and viral proteins. Furin cleaves cell surface vasoactive peptides and proteins involved in cardiovascular tissue remodeling in the TGN, at cell surface, or in endosomes but rarely in the ER. Furin also plays a key role in blood pressure regulation though the activation of transforming growth factor (TGF)-beta. High specificity is seen for cleavage after dibasic (Lys-Arg or Arg-Arg) or multiple basic residues in protein convertases. There is also strong sequence conservation.	2.67753e-94
NZ_CP016380.1\|WP_041216570.1\|1866681_1867404_-\|phosphatase-PAP2-family-protein	gnl\|CDD\|182658	PRK10699, PRK10699, phosphatidylglycerophosphatase B; Provisional.	3.47197e-34
NZ_CP016380.1\|WP_065476924.1\|1865779_1866610_+\|hypothetical-protein	gnl\|CDD\|270317	cd13599, PBP2_lipoprotein_Gna1946, The membrane-associated lipoprotein Gna1946 from Neisseria meningitidis; the type 2 periplasmic binding protein fold. Gna1946 shares significant structural and sequence homology with the periplasmic substrate-binding domain of ATP-binding cassette (ABC) transporter involved in uptake of methionine (MetQ). The members of the MetQ-like family include the 32-kilodalton lipoprotein (Tp32) from Treponema pallidum, the membrane-associated lipoprotein-9 GmpC from Staphylococcus aureus, and Toll-like receptor 2-activating lipoprotein IlpA from Vibrio vulnificus. They all function as a receptor for methionine. This substrate-binding domain belongs to the type 2 periplasmic binding fold protein superfamily (PBP2). The PBP2 proteins are typically comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. The majority of PBP2 proteins function in the uptake of small soluble substrates in eubacteria and archaea.	1.42247e-132
NZ_CP016380.1\|WP_044800289.1\|1864307_1864898_-\|hypothetical-protein	gnl\|CDD\|376158	pfam18735, HEPN_RiboL-PSP, RiboL-PSP-HEPN. RiboL-PSP-HEPN. Fused to endoRNase L-PSP ; in operon with ParB.	5.35337e-18
NZ_CP016380.1\|WP_065476927.1\|1869023_1870040_+\|aspartate-semialdehyde-dehydrogenase	gnl\|CDD\|237845	PRK14874, PRK14874, aspartate-semialdehyde dehydrogenase; Provisional.	0
NZ_CP016380.1\|WP_029300144.1\|1872692_1873502_+\|tRNA-pseudouridine(38-40)-synthase-TruA	gnl\|CDD\|234577	PRK00021, truA, tRNA pseudouridine(38-40) synthase TruA.	2.7468e-151
NZ_CP016380.1\|WP_065476916.1\|1860075_1860534_-\|hypothetical-protein	gnl\|CDD\|375918	pfam18492, ORF_2_N, Open reading frame 2 N-terminal domain. This is the N-terminal domain found in ORF 2 (open reading frame 2), a protein encoded just downstream of asp (A. sobria serine protease). The ORF 2 N-terminal domain is essential for proper ASP folding. This domain is intrinsically disordered but forms some degree of secondary structure upon binding ASP.	1.34355e-31
NZ_CP016380.1\|WP_065476910.1\|1853521_1855900_+\|phosphoenolpyruvate-synthase	gnl\|CDD\|235809	PRK06464, PRK06464, phosphoenolpyruvate synthase; Validated.	0
NZ_CP016380.1\|WP_065476929.1\|1870315_1872514_+\|pilus-assembly-protein-FimV	gnl\|CDD\|274615	TIGR03505, FimV_core, FimV N-terminal domain. This region is found at, or about 200 amino acids from, the N-terminus of FimV from Pseudomonas aeruginosa, TspA of Neisseria meningitidis, and related proteins. Disruption of FimV blocks twitching motility from type IV pili; Semmler, et al. suggest a role for this family in peptidoglycan layer remodelling required by type IV fimbrial systems. Most but not all members of this protein family have a C-terminal region recognized by TIGR03504. In between is a highly variable, often repeat-filled region rich in the negatively charged amino acids Asp and Glu.	2.47504e-25

>NZ_CP016380.1|WP_065476917.1|1860551_1862426_-|S8-family-serine-peptidase
MRKTSLALAISALLSALPIASVQASESCTPLTGKEAGLDTGRSSAARCLPGINPLQDQQWHLLNSGQNAFSPRGGIAGNDLNLWWAHRTGVQGQGINVAVVDDGLAIAHPDLADNVRPGSKNVVTGSSDPTPTDPDSAHGTSVSGLIGAVDNGIGTLGVAPRVQLQGFNLLDERSKQLQKDWIYALGGSTATADNRVFNQSYGMSLVDPQSASGLDQVQLDRLFEQQTQQAQGAAYIKAAGNGFNRIAAGDYMFSRTGVLPKLPFENSNIDPSNSNFWNLVVSAINADGVRSSYSSVGSNVFLSAPGGEYGTDAPAMVTTDLPGCDMGYNRTDDPSTNRLHNNPQLDATCDYNGVMNGTSSATPNTSGAMALLMSAYPDLSVRDLRDLLARNATRIDAGQQPVQVSYTAANGQPRQVTGLEGWERNAAGLWYSPTYGFGLIDVNKTLTAAANHTPLPPLVQLPAQKVTVPRSEGSIADVGSSATRSSTQVAQALTVEAVQVTVSLDHQRLPDLLIELVSPSGTRSVLLNPNNSLVGQSLDRQQLGYVRTKGLRDMRMLSHKFYGEAAQGEWRLEVTDVSNSSRQLTLVDLNTNRRSTLTERNNSQPGQLLNWSLRVIGHDAARS
>NZ_CP016380.1|WP_065476916.1|1860075_1860534_-|hypothetical-protein
MKHSLLGLALAGLLASAGVHAADESVVIDGKQYRTIEVNGQTYLTPDNGSKQRVARSADGKAPRQTLRSGDVLLQGVASPQLTASGTLLVEADDNQASALASRHGLRFKQSSGGIALLEAKPGTDLNAVATALKEEGVKVQIELAGALKQPK
>NZ_CP016380.1|WP_065476913.1|1857272_1859654_-|glycoside-hydrolase-family-3-protein
MPITTKLKAVSLSVSLALAGLLVGCNQNDSDPLVKDDAYYRGQAEAMVAKLTLGEKLDLLSGPGYGSANGAINVKQDVPGVAGYINGVLRSADGIDIPALKLADGPAGVRINANRDGDSASYYATAWPIGSLLASSWDVKLVKAVGEAMGDEVRQYGVDILLAPGMNIQRNPLNGRNFEYYSEDPLLTGKIGAAMVNGVESNGVGTTIKHYFGNNSETNRNQINDIGEPRTFREIYLRGFQIAVDEAQPWAVMTSYNKVNGTYVNERRDAVTDLLRGEWKFDGLVMSDWFAGDVANNAYKQVLAGQDLIEPGNVKEQLQQSIEHGDLDETKVNEAAIHILTQVMKSPSYSQLAISNSPDLTAHAKLARQAGAESMVLLRNDAAALPLATSSTLASFGINQINTYKGGTGSGDVNAASTTTIAQGLAARFPVNEALQSYYRDFYENNKVYHEGQFGAKGYYTCAEAPISGDLAALIANAATTQQAAVISIGRQAGEGADRSSGKGDYLLGDDERALIDAVSSAFHAQGKKVVVVLNVNGVIDTAQWSDKVDGILLAYMAGQETGHAVADVLSGAVNPSGKLAQSFPHSYASVPSAGTFPGEDTDGDGEPDDLYYNEGIYVGYRYYSTFEQAVSYPFGFGLSYTSFSYTSPAIASNTLEGGSAGNLVLTATITNTGAVAGKEAAQVYVTAPEVKLKKPLIELKAFAKTAQLAPGASEQLSFTIPASILASFDEASNQWIVEPGRYSAYISPSSDVSASTPVSFTVSKEIVVSNTTPGALALPAGVDPASVTTVTR
>NZ_CP016380.1|WP_065476911.1|1856199_1857177_+|AraC-family-transcriptional-regulator
MLGACQQQGGDPDAILMAGGLTSFDIEREQGRLPAHSHYRMLQLMQPYLASFHETILSYDIGQLYQHYPPLISLCLNQPSPRAALEVLLAYRPIIGSCDELRVRRGTQASQYLYVNQGPASLGASQAIPNFIILYRILRVYLADPRVSVGFTGRPPPRHQLLDQFFATRCRWEQGENTLTIDNGQLDCPSHCYNEPLGHLQLAQLAQICADIAERAPFAYLVGERIRHKIREGELESDESLLKEVCAAMNVSRWTLNRKLQGEGSSFSTLLREARVSEACRLLGEGDQPLQNISDRVGFSSQSAFNRFFKANTRMTPLAYRNARQ
>NZ_CP016380.1|WP_065476910.1|1853521_1855900_+|phosphoenolpyruvate-synthase
MQVQQYVLWYEQLGMQDVERVGGKNASLGEMISNLSGAGVSVPGGFATTAFAFNEFLESSGLNGKIHDLLDSLDVDDIAALNRAGQQIRDWVIEAPFQSALEQAIRVAYDKLSGGLDASFAVRSSATAEDMPDASFAGQQETFLNVRGIDAVMIAVKHVFASLFNDRAISYRVHQGYDHKGVALSAGIQRMVRSDLAASGVMFTLDTESGFNDVVFITGAQGLGEMVVQGAVNPDEFYVHKPTLKSGRPAVVRKTLGSKLIKMTYSGDASHGRQVQIVDTNEAERSRFCITDAEVMELAKQALIIEQHYGRPMDIEWAKDGQDGKLYIVQARPETVRSRQEANTLERFALKQAGKVLIEGRAIGHKIGAGPARVISSISQMDEVQPGDVLVTDMTDPDWEPIMKRASAIVTNRGGRTCHAAIIARELGIPAVVGCGDATKRIEPGQLITVSCAEGDTGFIYDGELDFDVAVTEVGNMPRLPIKIMMNVGNPDRAFDFAQLPNAGVGLARLEFIINRMIGVHPKALLEFDSQSPELKATIGKMIAGYESPREFYVAKLTEGIATLAAAFWPERVIVRMSDFKSNEYANLVGGRGYEPHEENPMIGFRGASRYIADSFRPCFALECEAIKRVRDVMGLTNVEVMIPFVRTVGEAELVIDILAENGLRRGERGLKVIMMCEIPSNALLADKFLEHVDGFSIGSNDMTQLTLGLDRDSGLIAHLFDERNEAVKALLAMAIAAARKAGKYVGICGQGPSDHPDFAAWLVEQGIDSVSLNPDTVVDTWLYLAEQHKAS
>NZ_CP016380.1|WP_005302533.1|1852400_1853213_-|kinase/pyrophosphorylase
MHTVFYVSDGTAITAEVFGHAVLSQFPLAFEQITIPFVETLEKARQVRMRIDEQFRQTGVRPILFHTIVDHQVREEVLKAQASSHDFLNTFVSPLEHELGVKAEPRLHRTHGMENRKLYDDRIEAVNFALANDDGITTKEYEEADIILIGVSRCGKTPTSLYLALQFGIRAANYPFIEQDMGVLDLPAALKANRHKLFGLTIAPQRLHEIRNQRRANSRYSSLEQCEQELACVERLFRQEAIRFLDTSSHSVEEISAKILEATGLRRQLY
>NZ_CP016380.1|WP_065476908.1|1852023_1852311_+|hypothetical-protein
MQRIIGSLLAVALWLTVWLSPLLLTMAAGCLLVWAVQGDVYLVMHLRTVLLIAGAIGLLPALWLTERVRRRHGVLNFYAMLMNNKELNRPGSQPR
>NZ_CP016380.1|WP_005302537.1|1850284_1851661_-|amino-acid-permease
MDLQQNGEELKRGLKNRHIQLIALGGAIGTGLFLGIAQTIKMAGPSVLLGYAIGGFIAFLIMRQLGEMVVEEPVAGSFSHFAYKYWGDFAGFASGWNYWVLYVLVSMAELTAVGIYVQYWWPEIPTWMSAAFFFVLINAINLSNVKAFGEMEFWFAIIKVVAIIGMIGFGGYLLASGNGGPDASISNLWAQGGFFPNGISGLVMAMAVIMFSFGGLELVGITAAEADNPEKSIPKATNQVIYRILIFYIGALAVLMSLYPWGKVVEGGSPFVMIFHALDSNLVATVLNMVVLTAALSVYNSCVYCNSRMLFGLAKQGNGPRSLLKTNKSGVPVVAISVSAAATLLCVLINYLMPGKAFELLMALVVSALVINWAMISLAHLKFRKSKQAEGVVPKFKAFWYPFGNYLCLAFMAGILVIMYLTPGIQISVLLIPVWIIVLAIGYQFKQKRQARVAANLG
>NZ_CP016380.1|WP_029300114.1|1849331_1850036_+|SIMPL-domain-containing-protein
MWRPLLTLSALVISAPLFALEVPQAPHLVVSGYAEQKAEPDMLTLNVSVTALEKQGIKAKQQVDGKVAAFFGQLEGLGIKRSDVEAGNLVISPEYQYPQNKKPELVGYRAQRQLAVKLYQLDKLSELMDTALKAGLESVSQIEYGLKAPQTIKEQARLGAVEDAKTKAESLAKAFGMKLGKVYSVEYRNNSPMPIYSRALKAAAMAPAADMMENSYQQQQITITDNVEAVFLLE
>NZ_CP016380.1|WP_065476906.1|1848717_1849275_+|hypothetical-protein
MQAFNWVDIDGIRYSWDGQGSITCTGQFGYHATMAGDRIDALDLESDDGEVAGSLNVDFAAATISFTSAVDAAPPHMMVLVGHEQGQQEYTLQSLSDVCLQGLLGHSDNIDCAPLVTTPMMEPVAPLAGHVLSWDSFHFDDDVLLGSRSATPLAAAHQGLPGGEISINIDMTNQVLDQIPPLHDI
>NZ_CP016380.1|WP_065476920.1|1863460_1863835_-|hypothetical-protein
MTPKQHLLAKAIFIVATMLSLAMIAFVAWAVVTVSPLHPADMAPSQSLSLGLATAIALFVLAFNYVAYRGLTEQVTAFKVVFWCFVALQLFAFPIGTVIALTLIYLWNQSRAPLARPLGATVSL
>NZ_CP016380.1|WP_147822854.1|1864085_1864292_-|hypothetical-protein
MEWLVALIIFIVIGAIFGKPSSCSICGQSIKKTYYKWTISEKKQTLCPKCNSQMERKVSKEAFNRRFG
>NZ_CP016380.1|WP_044800289.1|1864307_1864898_-|hypothetical-protein
MSKAIQGFEYSIKDAEELLAHFDGINANPPPPSSEVLKRAGLVMALTAWETYVEDRLVEEMHKKLAIVQGSYLGDFILKKLHADLKSFHNPTSDKTKKIFMDYLGFDVTEGWRWSNYEPDKARSTLNQWIKKRGEAAHRSKPISTGVLAPHLIKRDELEKVIRFIRDLVKSTDCYINEKIDLHHAAVFERQNQLST
>NZ_CP016380.1|WP_065476922.1|1864973_1865336_-|VOC-family-protein
MIDHVEIKTMHFDDCKHFYQTVLRPLHMELKWADDAAAGFGLIGRDKVSFLIEKFDGNTPCHLAFSATTSAQVDAFHLAGIQAGFRCNGQPGPRVHYSPDYYAAFLLDPDGNNVEAVVHI
>NZ_CP016380.1|WP_065476924.1|1865779_1866610_+|hypothetical-protein
MQRRSFFALSALALLAGTLPLTALAADPAKQEIVIGTTVGDFADMVTDSIKPQLEAKGYQVKLVEFTDYVTPNIALADGSLDVNCFQHKPYLESFAKDRGLSLAPITQVPTGPMGLYAGKLGDLKAVKGGSTVAIPNDPTNQARALLMLQDLGWLTLKEGINPLKASEFDVVKNPHNLKLVLLEAAQLPRSREDVDFSVINGNFAASSGIPFSSGLFLERSYNFINWVVVKSADADKPFAKDVAAAYNSAAFKAYAAKRFVGYKYPEGWQGASASN
>NZ_CP016380.1|WP_041216570.1|1866681_1867404_-|phosphatase-PAP2-family-protein
MPTHASSLPRRQVLCFSAALILPLLLLACLPWQPFMSQALHSDWLWWPYALTRMVDVPGIGVSILALLLLTRHKLTLSLPALLALGGALFAVLAGDWLIKSLIKHLTEEPRPYLLWLESQQLIPAIQQFYAGKVEVRSEQVHAASQLLALPEWLANHWQAEVNYAFPSGHSIAAMSLAQFFGLIWLARAPAGAWLLPLWAIGVGLSRMLIGMHWPLDVLASALLGSLTALFAARWWLRHY
>NZ_CP016380.1|WP_065476925.1|1867751_1868882_+|4-phosphoerythronate-dehydrogenase
MKIVVDENMPHARELFAEFGEVIPLPGRQMLAADLQEADVLLVRSVTRVDAALLASCPRLSFVGTATIGTDHVDKGLLAERGIPFFSAPGCNKYSVGDYVLSALLVLAERHELNLSEMSLAVIGAGNTGECVAGKAEALGMRVLRCDPPRARAAEANEAAQFVDYQQALEADIVSFHVPITHQGPDATFHLLDAAQIAARPAGQILINASRGEVWDNRALLARQQSQAPLRLVMDVWEGEPEPLQALVPHTELATPHIAGYSLEGKARGTWMLYEALCRQLGRTPRQDLQSLLPTPEVREVTPGQPADQALIKQLVHLIYDVRRDDARFRNRLGVAGSFDEQRKHYPERRELSSLQLKGPFAGDALARLGFVCQPD
>NZ_CP016380.1|WP_065476927.1|1869023_1870040_+|aspartate-semialdehyde-dehydrogenase
MSQQFNVAVLGASGAVGEAMIEILEERAFPIATLYPLASSRSAGDTVRFAGKNVEILDVEEFDWSQVQIALFSAGAEVSAKWALIAAEHGCIVIDNTSCFRYDEDIPLVIPEVNPDALVDFRNRNIIANPNCSTIQMLVALKPLHDEVGIARINVATYQSVSGSGKEGVSELAGQTAHLLNGRPVEPSLYPQQIAFNLIPQIDSFTDSGYTREEMKMVWETQKILGDASIAVNPTCVRVPVFYGHAEAVHVELHQPLDAEQVKELLRNAPGVTLFDDENDYPTPVRDATGKDEVLVGRVRQDISHPCGINMWIVADNVRKGAATNSVQIAELLVRDYL
>NZ_CP016380.1|WP_065476929.1|1870315_1872514_+|pilus-assembly-protein-FimV
MGHSRITLATLLALGLLGTAQAEDSAREPFFVELKGPDEPAPPAVNSQPLAQPVAAPRATSQPSRATAQPIVRQVASNAGSYGPIRPTDTLWSLASKYRPSSSVSVYQTMVAIYEKNPRSFADGNINHILVGSRIQLPTTAEASVITDAEARAKFRSDNASWKGLSPKYLASKHTQPAKPVATKATPTKAAEPAKPEVAKVAPAKAAPIPAPAPKVETPQPATEVKAVAKAPEPVASQAAATSAATASAPAPLPADVNQPVGKPSTEMALALEDANAQLGQVTEMNHRLKLRLQSLTEEVETLKAQLQDQTALQKEIAELKAKPVPPVAPAPEPKQNWLMDLLSSPLNLAMIILLPVLLVLALVTLWLRARARRELEEQEKSLSESTAMVMDQESSEFDELMTVGITDDEPVRPRPDLNTPDGYMAVEEPAAPADLVFSDDGEMDLASFDAEPAPPAKAAIRDPDLVPELDLAHDESITLDTEPDLDLASEFNPKPKAGNEIMSEEELQAALFAELDADLEADLALDGSDDGQPDGDPMVSDEDLASFDLSDFETAFAEPGADKAASGTADASADELLAELGLEPEPTKGKQEAAADLEWDPNELALADFEDAFAEVESHPGEVKPREQAQESGYVEIDKLLAEADATTTEQEPYQGFSLDVGLDGFPEVLPESTGFDVDADDGGVGAKLDLARAYLEIDDKDSARELLQEAAEQGTEHQRAEAEKLLKRLG
>NZ_CP016380.1|WP_029300144.1|1872692_1873502_+|tRNA-pseudouridine(38-40)-synthase-TruA
MRIALGIEYDGSRYFGWQRQREVISVQEELEKALSRIANHPVSIQCAGRTDAGVHATGQVIHFDTDANRAEGAWTLGLNSNLPPDIAVRWVKQVDEGFHARFSATARRYRYVIYNHNYRPAILGSGVSHYHETIDADLMHQAGQSLLGEHDFSTFRAVACQSNTPWRNVTHLCVSRSGPYIVLDIKANAFLHHMVRNITGSLLLVGQGLQPVEWIAEVLAARDRNLAGPTAKAGGLYLVDVDYPAELGLPRMPLGPLWLPDSAPGTTSF

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Crispr_ID: NZ_CP016380_8

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP016380_8

2050588-2050732

Orphan

Consensus_repeat	Method
TCAGGCCACGCTCTGGGTTTCAATCACGGTGTTTTCGTTGCGATG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP016380_8

>merge|NZ_CP016380|8|2050588-2050732|CRISPRCasFinder
TCAGGCCACGCTCTGGGTTTCAATCACGGTGTTTTCGTTGCGATGGTTGAAGGTGTTGCGGCGTCTGCCTACCTCCTTCGTTCACCACATTCAGGGGCCATCAGGCCACGCTCTGGGTTTCGATCACGGTGTTTTCGTTGCGATG

>NZ_CP016380|8|7|2050588-2050732|CRISPRCasFinder
TCAGGCCACGCTCTGGGTTTCAATCACGGTGTTTTCGTTGCGATG	GTTGAAGGTGTTGCGGCGTCTGCCTACCTCCTTCGTTCACCACATTCAGGGGCCA
TCAGGCCACGCTCTGGGTTTCGATCACGGTGTTTTCGTTGCGATG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP016380.1\|WP_081304575.1\|2066276_2066921_-\|TM2-domain-containing-protein	unknown	unknown	gnl\|CDD\|377473
NZ_CP016380.1\|WP_065477086.1\|2048532_2049816_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|370749
NZ_CP016380.1\|WP_147822856.1\|2038613_2039996_-\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|379062
NZ_CP016380.1\|WP_065477089.1\|2052208_2053027_-\|FTR1-family-protein	unknown	unknown	gnl\|CDD\|272930
NZ_CP016380.1\|WP_065477091.1\|2053026_2056008_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|271332
NZ_CP016380.1\|WP_147822858.1\|2065551_2066145_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP016380.1\|WP_011706365.1\|2056012_2056462_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP016380.1\|WP_080891367.1\|2040620_2041562_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP016380.1\|WP_065477079.1\|2041640_2042006_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP016380.1\|WP_065477087.1\|2049995_2050556_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP016380.1\|WP_016351032.1\|2047293_2048481_-\|Bcr/CflA-family-multidrug-efflux-MFS-transporter	unknown	unknown	gnl\|CDD\|182964
NZ_CP016380.1\|WP_011706364.1\|2056579_2057065_-\|YqhA-family-protein	unknown	unknown	gnl\|CDD\|179964
NZ_CP016380.1\|WP_147822857.1\|2057546_2061347_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP016380.1\|WP_065477093.1\|2061561_2063100_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP016380.1\|WP_016351033.1\|2046716_2047184_+\|DUF4357-domain-containing-protein	unknown	unknown	gnl\|CDD\|379529
NZ_CP016380.1\|WP_158513275.1\|2063099_2064161_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|214687
NZ_CP016380.1\|WP_065477081.1\|2042308_2043373_-\|carotenoid-1,2-hydratase	unknown	unknown	gnl\|CDD\|227908
NZ_CP016380.1\|WP_065477097.1\|2064147_2064789_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP016380.1\|WP_065477084.1\|2045838_2046519_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|213222
NZ_CP016380.1\|WP_065477082.1\|2043369_2045817_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|225669

Protein	Function_ID	Function_description	E-value
NZ_CP016380.1\|WP_081304575.1\|2066276_2066921_-\|TM2-domain-containing-protein	gnl\|CDD\|377473	pfam05154, TM2, TM2 domain. This family is composed of a pair of transmembrane alpha helices connected by a short linker. The function of this domain is unknown, however it occurs in a wide range or protein contexts.	5.41613e-11
NZ_CP016380.1\|WP_065477086.1\|2048532_2049816_-\|hypothetical-protein	gnl\|CDD\|370749	pfam09913, DUF2142, Predicted membrane protein (DUF2142). This domain, found in various hypothetical prokaryotic proteins, has no known function.	0.00922364
NZ_CP016380.1\|WP_147822856.1\|2038613_2039996_-\|ATP-binding-protein	gnl\|CDD\|379062	pfam13191, AAA_16, AAA ATPase domain. This family of domains contain a P-loop motif that is characteristic of the AAA superfamily.	0.00171134
NZ_CP016380.1\|WP_065477089.1\|2052208_2053027_-\|FTR1-family-protein	gnl\|CDD\|272930	TIGR00145, Uncharacterized_protein_slr0964, FTR1 family protein. A characterized member from yeast acts as oxidase-coupled high affinity iron transporter. Note that the apparent member from E. coli K12-MG1655 has a frameshift by homology with member sequences from other species. [Unknown function, General].	1.07336e-38
NZ_CP016380.1\|WP_065477091.1\|2053026_2056008_-\|hypothetical-protein	gnl\|CDD\|271332	cd14962, NHL_like_6, Uncharacterized NHL-repeat domain in bacterial proteins. The NHL (NCL-1, HT2A and LIN-41) repeat is found in multiple tandem copies, typically as 6 instances. It is about 40 residues long and resembles the WD repeat and other beta-propeller structures.	9.39507e-05
NZ_CP016380.1\|WP_011706364.1\|2056579_2057065_-\|YqhA-family-protein	gnl\|CDD\|179964	PRK05208, PRK05208, hypothetical protein; Provisional.	7.57262e-25
NZ_CP016380.1\|WP_016351032.1\|2047293_2048481_-\|Bcr/CflA-family-multidrug-efflux-MFS-transporter	gnl\|CDD\|182964	PRK11102, PRK11102, Bcr/CflA family multidrug efflux MFS transporter.	5.1879e-151
NZ_CP016380.1\|WP_016351033.1\|2046716_2047184_+\|DUF4357-domain-containing-protein	gnl\|CDD\|379529	pfam14267, DUF4357, Domain of unknown function (DUF4357). This domain family is found in bacteria and archaea, and is approximately 60 amino acids in length. There are two completely conserved residues (G and W) that may be functionally important.	9.1827e-18
NZ_CP016380.1\|WP_158513275.1\|2063099_2064161_-\|hypothetical-protein	gnl\|CDD\|214687	smart00482, POLAc, DNA polymerase A domain.	3.43943e-13
NZ_CP016380.1\|WP_065477081.1\|2042308_2043373_-\|carotenoid-1,2-hydratase	gnl\|CDD\|227908	COG5621, COG5621, Predicted secreted hydrolase [General function prediction only].	9.57552e-86
NZ_CP016380.1\|WP_065477084.1\|2045838_2046519_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|213222	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein. This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.	1.57702e-88
NZ_CP016380.1\|WP_065477082.1\|2043369_2045817_-\|ABC-transporter-permease	gnl\|CDD\|225669	COG3127, COG3127, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, permease component [Secondary metabolites biosynthesis, transport, and catabolism].	3.59197e-19

>NZ_CP016380.1|WP_065477087.1|2049995_2050556_-|hypothetical-protein
MTIRPGLLALTLLLTLSGQAQAYSYAAAGKEPLIDAREALLGAATDGKDASATLSEIAEELTYLEQHHKVELQAPLAAAIKAKDAAATAALLNRAYKAEIERRLEGASQNLGDYQTAKVLVVKSKRFLDLILPSLSEGDRKAAEQALAKVLDAIGNPGVFGVGAKPADAAAFTEAEKALMAVLAPL
>NZ_CP016380.1|WP_065477086.1|2048532_2049816_-|hypothetical-protein
MLTLLQLAWLGWLLAFPVALDSDDALNFAHGVVRFSVLEFSPHFPGYPAFIWLARLINLLVDDPARAVQYTSLLGSSLLAPLAASLAVRLWQRPSLLAPVWLLVLALPLTPTLALSGLSDGPALAAWLGTLLALQQRKIALAGLLLGLMLALRPSYFVLALLPLWLGVAQKGQRLNFLLPIVLVGLACLLFVWQADGWAYFSEGRRFTDGHFALWGNTAAAHGDRLLSWARTFNEQLTSLWPLLMGALLVLPLWQRSKAHNPALSPCWLLYWLVLLLWTLFGQNPDNPRHLAPITLLGLVLLAGWLPRRGDLPAMLGSLLLLLCTLTPPATPAMTRAARLAEQACPALVTQWGVRLLRETTALPVTDGWYQGDARLALAQGACRLSRRPLGPEDLPAGGQRVWFAPRFHAEPGLWLGIQDHPRHQNW
>NZ_CP016380.1|WP_016351032.1|2047293_2048481_-|Bcr/CflA-family-multidrug-efflux-MFS-transporter
MPHAPLSPRFLFILLGALAGLTPLAVDMYLPAIPAIARDLATSIDGAQLTISAFLGGFAIGQLFYGPLADSYGRKPVILAGLVMFAIASVGCAMADSLPELLAYRMLQAAGGAAGSVVVNALLRDLFEKEAFSRAMSFVILVMTLAPLVAPVVGGYISAHSDWRVIFWLLVGISLLICLMMQWKIQETLKPEHKQPLNLGQILKNYWGVLSHRGAMGYVLCGSLSSSGMFAFLSASPYVYIEYFKVPTEHYGWLFGLNILLMMVVTFVNSRLVKGVGAERMLQYGLLVLPCAGALLIYNAWSQTGGLWGIVIPVVLFVGHISLVGANAMTGLMGHFPQSAGTASALAGTLRFGIGAVVGILVNLNPPESPLPMAIAIAGCGFGSTLSYWLLTGKK
>NZ_CP016380.1|WP_016351033.1|2046716_2047184_+|DUF4357-domain-containing-protein
MLHKQVSFIIDSKGNKQAAVVPIEIYNELMTLQKALSDNKPGERELYHFNGKGAEAHGYPVGKRQNPGFMVLAGSTANGEDAASLREAVIELRQELLGKGILAPRSEGGFVFTADQLFNSPSLAASLVAGNNRSGLDAWQNSAGYTLKRSGFGKK
>NZ_CP016380.1|WP_065477084.1|2045838_2046519_-|ABC-transporter-ATP-binding-protein
MLTLRNLGKSFNNGSERLPLFHHLDLTLAAGEITLLLGQSGCGKSTLLNLIAGLLPPDEGEIWLGETRLDNQSADERARLRGRHFGIVYQDFNLLPTLTVAENLALPLAINQLARDETRIDGLLERLDLAHKRHAWPEQLSGGQRQRVALARALIHQPQWLLADEPTGSLDEHNAEQVMALMMTAVRGTGAGLLLVSHNPAYGALADRVLRLEGGQLVEIKGRRHD
>NZ_CP016380.1|WP_065477082.1|2043369_2045817_-|ABC-transporter-permease
MLPLPLKALLRLYRAHPWLLLMSLVGLTLGVSLVVAIELLNHSARTNFVAARSQLAGEANYRLAPDGGLDEQLYVTLVRSQPNLDAMPQLHGWLQDEQGRSFQLLGMDLFNPGPLRRLFGAAPDKEPTFSLTRADSVWLAAPEAKRLGWQTGQSRRFVLGGSEGAPPRPLTLTLAGTFEPGAVPMERLLVTDIGLAQPLLGKEGRLDRIVFKLSEQEATALQRALQTAQGAGLAAQPLWLEPISPALDASQLGDALALNLTALSLLAMAVGLFLVFNAQRFVQSVRRPQLAQLIILGMPPRRLLHWLTLEILILASIGTLLGLLLGSLLALALMGQLTQALADLYGPNPIDLLRLSPASLGKALVIGLLGTLAANLPGWWQLLRQSPLELREGNSRPPAHPWKRRGLAIAILLLCALCLWRPETGLGGALFVAGGWLLAMALALPDALRAVLGRLRRRERGSLSARLGVAETLYHLDRTAIAVMALQLAIAAAIGIGVMVSSFRSSVEIWLGQRLAADLYVTAPKGVAGNKGALSEQILNTILAAPDVRAASRRSVHPARWQGQPIEWAQMDFIPELKAAYPLLAGRWPAPPDEVLASEPLTVHLGVKVGQRLEVSGEQGPRTFTVTGVYQDYGSDKGQILHAFEGGKVQSLALFSPHVDRLADRLRAQFGERVNLLPAPAIHAAALRVFDQTFVVTELLKLLILGIAFVGIGSAFMVLGLARRGELQTLQSLGLSPRHCRRLLVWQGAGLGLLTALLALPVGYGLAWVLIEVVNPRAFGWRLAFEAAPLHAVTALLLAPVCGALASWYAARRVV
>NZ_CP016380.1|WP_065477081.1|2042308_2043373_-|carotenoid-1,2-hydratase
MKAIIWPLALICTLYGAGISANDLGAILGGGNDHFKKALPGQSIHLPADHGAHPDYRSEWWYLTGNLKDQQGRGYGMQWTLFRQGIEQEITSENPWLTPQLWLAQFAITDVSKGSHQQDERTSRQGPGLAGASGGQYWLKEWVLASQGESLFPATLKVQSKAGDLDLKVSAVKPAVLQGKAGYSEKSPGNASFYYSYPRLTISGTLTLDGETRNVSGEGWFDHEWSSSVLAQWQSGWDWFSLQFEDGRELMLFRLRTKAGRTEPENRYGILIERDGSSRVLNPAQIRLTPGKTWRGPKGQAYPIEWQLAAGDMRLTIEARQPDQAMTGRFDYWEGAVLVSGDAKGVGYLEMTGY
>NZ_CP016380.1|WP_065477079.1|2041640_2042006_-|hypothetical-protein
MGSLTIVNALGVDVEIIEASPYQFMTLTIKNGQSAVAKVATNFERFILKIRVLENIYSYDLNKGHWYGGDGDNHYPNPNSKVNIILTGDRGSYIETSYNYAPDNTATMCKYASDTKALDKV
>NZ_CP016380.1|WP_080891367.1|2040620_2041562_+|hypothetical-protein
MHHKAMLAIACTAALSACDSEKAANSIAKRAPLPLPDAGVYEANLLSRDGDQGPLKMIKGVEGLALVYPKGDGEQRWGVWVENDGKSITSSQWMGLAAQKENKDGIYPVLLERTSVRGKRLDAQSNDHNLISFQDKSVTDLDGKEVKRWTFDFTRVGTQFRDPDQSTALYRDWSGHLAVSKLTTRAITSDSWRVEDDAGLADAMVGLIRSTNNGGTLTLDIEFPWAGCTLTGKGNAEPGKGLSKLNLSGFGKCSFKASSDLSPLENKWVLGLAKARDGAQAYVAAFEMPGTRKATLVVGFPEQHGLMMVGEKY
>NZ_CP016380.1|WP_147822856.1|2038613_2039996_-|ATP-binding-protein
MSTEHFIGRKNAIKQLQDVLLGQKKSGGNLTIQSIEGPGGIGKTSLFDHVFDSVDFKNQNYLILRVDGNSLSTDMVDHAVTTLIDSAKANNPLKNPPRHYFPTVQNVSNNIESIRAEFSDEIKRKSPEKEINYARLINLAMSMGEAINEISPKTKSYINFEKVNTLQPLINEAMPILDSLQEETPSFFERLGIGNNTALRNAIKKDACAEISRAFFSDMSAILSGYQNKDFLKASHSKLHGVDKLLIIIDDYEKLQYSFEAILVNHLLSSLKSAEFESVVFIIGRDQLEATNPAWDQHLKKHLMPRVELTPLSMNEMYEFVEAYGIDKEDEKNRAWKDTHGYPFYVQLWIDEHTSGGRSALMLKRFYDRTTRWMNEQQKCWLKHVLFLNEINVKTLQRMFENKNEANAVFEWFKQEGSIRDTYGTVFRVREYLRSRLIDYLQISDPEYCEMLRKKGDTNI
>NZ_CP016380.1|WP_065477089.1|2052208_2053027_-|FTR1-family-protein
MFASFLITLREGLEAFLLVGICLSYLAKLGASRYNKFIYLGVGLGLIASLVVAFLFQVVVSQFESERYNHLLMAGILIFATLVLTYMAVWMQKQAKSQVGAMTARIDAAIDGGNLFGLVLLAFLAVMREGFETVLFFSALVYSGQGVDLHEGLMGALGGLLLSVVLVWGLLRSTRKVALAPFFRWTGLLIIIIAAGLLSSAVNMLQAAGLITFWTTPVFNISHILDDQGVFGTFLRALFGYNASPAGLQLLTWASYLVIFVTVWHRNYRPQR
>NZ_CP016380.1|WP_065477091.1|2053026_2056008_-|hypothetical-protein
MLKLLLSLMLTALLLGTASAQEMGAAMIAYDEGNAPRLVTANQSAGSVTLLERDSGKRLKEVQLGGDLRQLARADDGTLLVSDYRGDRLLLLDDDLDLDKAIRTGHRPYGVIFDPKRRWFWVTLFESARLQAYDTAGKLQLDVATAETPRGLALTDDDRLLLTHAMTGQLAIYDLAKLGNGAKGTTLPKPHLITLAETHSDTPSDSQGLPRLLDGITLSPDGSEAWLPHVLWSFDHPFQFQSTVFPAVSIINLDEEKERVDERKQLFLQINLPSVGNRSQIVSNPFAARFSADGKRVYLTLAGSEDLLVFDLSRSGKQNSNRHRRKKFQGGAKATQLLRHLPGQNPRDLFVDNDHILVHNVMGQDLTRLNTGGSGPFARVTVDVPHFAKLVETDPRPEALKRGERLFHLGNTLGNNGANSRFPMAGDNWMSCNSCHLDGFNFTNRYLMAAHRQQSGDNAINGHANLANMVAGDFIGEYLRMTQQTQGGMGHDTRDGAEPVDPAKPQAEVKAMMEDLHAFVTADGNLPYLANWLRLDAPRRDPAKAPTTHPREWLNSASCQNCHQQAFQDWSESNHRLMGNSHPYYKVVQALARETEGEAFGQWCQGCHMPQQVMNGQQDLPKGSHMFEQGGASLIAAHQKGEPVVEEGTGCVLCHRITRLEDAGGNSAFTVNLKDRESYVFEDAAGGSLQHWLAERQINARPAMHKASYQKDFYRDAALCKSCHNEFAPGTGANIVNTWDEWENSSFAKADDPAKRRTCIDCHMNPEPGNGGAPVAGQSTENGTVKERLYRHNFTGAQHQLVGLRSATLEQESLALLRSSATLSARIEQGSASPQLVVRVANTGAGHALPTGVADFRELWLELTVTDASGKLVLQSGQPLDGAVPDDARLFRKVFGDAEGKPVGLKFWRYTKLLEDTRIPADGWRDEAWPLPADAKRPFKADIKLNFRTYPKWVNDAVRAAEPSLPEPPIVLLNRLQLTLPPLPVTPATEPQS
>NZ_CP016380.1|WP_011706365.1|2056012_2056462_-|hypothetical-protein
MTSLSLSPRHCWQWLAYHHQAAEGSLYLMFFSGLLLWEPLTPLWSLARWNLFLHVALSLTLFPLLFGAFWLSHRSLLRKSRKPFLRTTGRIIEALLLVCLASGLLLVLHGTPGDGMGNLASWAHWLSALALTPLVLRHAWRWTILKWRT
>NZ_CP016380.1|WP_011706364.1|2056579_2057065_-|YqhA-family-protein
MRRFNFMLNGSRLMMFPFYVCILVCVALLMVKFAMLLYALCIDIVGIHYMDLITGVLTLVDFVLVAQMLILVSICGYVQFIQTQEQREALGNNWLSKINFASLKLIVINSLVTIAGIEVLKAFLDDGVGNEVEMKWSVIVFLAFSTAALIYAVTERLADHK
>NZ_CP016380.1|WP_147822857.1|2057546_2061347_+|hypothetical-protein
MSQRYSENWMLLKSILSGYENTRRFDFQPYEEHTRAQALSIFLVHAELATPKLDRETIEDILTGRKFWPNTVGDSIFEGGGITLSWLEENGIISFYANWCSLHCRPVVDSEKIDPSMKPLTQAIEHINDIICGKNGFIKPHYAIAEEKLVKLLTPIFGNKPIIELLPTLILDDGYFKLISGSNDVNSLVSTYLWFSLLQELEPKEAFERWMLCNRIYSNWPCPVSFGHQQHSELKVFTNELISYICEDKTLGVGMSVFWKQLINERDFIGVVSPTRMHVNTTLDSLGDIKSTCESTPAEYMPTIHTLHNDYNVYDVDCVNDIHFMHELRHLKHYEFYRNPISFYKILLSDVIGRCIRIEGRVLESYHNEQLEKLIELSKLRPLLRYILFVILPMDDNSSYLLWLLSRSITCDIALFHLSEHSPTRHQHNREKTILLLDKAYQQVVCHEYLESIQGIADVGERLFQVVNFMGIRCYLDKDDFQSGFHYEFLMQFINCLNDNQIFILGQKFVTSANSPDNLSNNLHQRNHMYLIGFKLIERIESEGVDLLGELKRAMGETIINYYSSDLYDNLEGQQSNLEPTLFFASLPWYKIVSSSGANPIIALSINFDEWQKQLLYTNENSHKVASALRHYLLVLMCIGKHIGVEKDKNAISDLIEEISRRYGFNERETAISLFDAAFYYNDFDLWLSFCSYCNNFTDSLYDKFIYRCGSKIPLDRVFVMLEQSTIVDRNTKLEDLIASRISPDDEYMGLSGIEQAFISACGIGYFELAAKLVTSAKDILSQEHIVNSQNHHWVKVRKAWLSYEYKQQLLELLQSNTLSPEKFVIEISKKNIPHELTDSTYQYINESNWKECDFFRQYISAAAYCDKEPEKCVRIMEHLCSETNHNDHAFMLFKGYIALHKKNGGQTDLQSALSKFLCSIKSVTPENMRNVWIASILDVYRQLNDSINIDKFWMKLSVNQQNRRDILHPYCRALISRGEPLRAQSIIDRYLAFNNQTLEGLGLNELIDELGRALKFEHPMTKLVNIVNEGSQRTSIQLAKHYHQIVSKDFPDYVEIVSPGKQPHEYLKDIIHEIASELLLRKGNLQQHRKSKSIERKESIRITKEDLINDWFTSLFDKRMAEARVGLRDQKRGGTSSSGNGPGEIDGYIIDSRNRRIAIFEAFRLFSVDTTVISEHLNKIAGYDNECLDAIFILAYCDVSDFSGLTRGYESFIATENYTGFTCVHGLENKLATLNSQDNLWFGMESRQRGDKRINIYHLLLDMKL
>NZ_CP016380.1|WP_065477093.1|2061561_2063100_-|hypothetical-protein
MSKQKFDAVVFSEAFKATVQLYQGPFVVFPDQPGICHQLRSERLHLSLRSFARGRGERLNENRIKDVLDELDAFAFEDGLPVVAHYRVAPYLAGYIYNLGGGRFLQVTRGKLEHIKTLPAGVYFTETSTMLAAPGLAQQTDLKALLGWFNCTVDQKLLLLAWLTYTVATPKAAQLPYPILVVRAPAGSGKTFMCSKVIRQLVDPCRVASQTMPRAIKDVAISAQNSHALIYDNLRFIRHELSDGLCQVATGGSTVARKLYTDGQEFSMDLRCALVLNGIHTFLTESDLVSRCVNINLAPIGSEQRLSEAELSAKFDEQLPSLIYTLHVLAAKVLAAKDSVEITFKSRMADFSVWVAGLETVLKLPQDQLQDAYRKNVEQAKVAGVVDDSLFVALCNFATRYPKTSSWHGTPHELLSALEAQTAVSLGSDMPKNAAAMSRRLPMLQDALASNGVYVYRGKASVRYYDVWFEPKANQSRGECDDVADPSVTPTQPSREDQSCEENDGVAESLLG
>NZ_CP016380.1|WP_158513275.1|2063099_2064161_-|hypothetical-protein
MISSEEEFNVKFKEKLLENTILSRNITPAIISRYSPSGEPKIPSISSKIPLIYATINYLCHQKGVEIRPDIHPSLISNAQGGLAELDALGRIMEFHSMTKNSTILRHVSKAFATSTGRSVIYGPSLTSLKKKFWPFILNPISGYLYVLLDYGQQEPAIAACFASDRELQAACQGDLYMHVGQHRALAPLGRDELKAAVLPYSYGQRSEAYAKEHDIPVAEAQRRWYALREIFHLVDAELNRRSQLAFRDGFVRCLDWAARVTPLSNPLAVRNWPVQAAGADIMRRAVIGLYDAGIDLRLTIHDAFLIRVPIAEQEQQVAKAITVLTQASASVLGGFELNVKIDGVFDGQAGVM
>NZ_CP016380.1|WP_065477097.1|2064147_2064789_-|hypothetical-protein
MSLMLELLKPCLVDAVALVQSQAIKLPPDGVKFMLDMDRSLNVLVVSDKSAFSRRLYAIDQRLAQELGDMVKLYAFIPFRSEIGAVGMMQVNLQSMDGYSTAKRKILEAATNTYYVTRLADSYAFSESEDNLGIAPIADQEYNSILELVFSESIIASREHPIFRKLAAPVLPNNDENEENEEKSNKGSDTVSLPPASDVLSIDIDLEHINDLL
>NZ_CP016380.1|WP_147822858.1|2065551_2066145_-|hypothetical-protein
MEQQSDSFFKDPEWSAGTAADGRKLVNVSGTFTYMERPVRGMLQMWVQGEGFSVEALEINGQPQPEIMIDALLDKMCEAAKEEAAPQTAQRGKQPLPFIGKRSFNFAGGSGTERYITIKQSGQTVIESCGASLMDDNGNFQEPSCSVDWKGPFATPLKTSSAMYRVEKDRIYQIEPDGSPARDCMASREDCSVSLYE
>NZ_CP016380.1|WP_081304575.1|2066276_2066921_-|TM2-domain-containing-protein
MGSPTITTLSDLVLRSHADYEVVFEHVAAHLQAEGGTIKIADRAKGTLEASWKYGVNPFGLRVTVHFTSPDEGIVELSLTGSFVDAIDTWGTAKKKAKAIAEVLPSPIDVAAWPIREQASIPASTQPAPAGGTVHHRGKRKVLMALLVFFGGGIGLHKFYAGNWGWGLIYLAACTTGIPVLLSLVEFIKVLCLSQEEFDKRYNYQAVRAFQWVW

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Crispr_ID: NZ_CP016380_9

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP016380_9

2297303-2297406

Orphan

Consensus_repeat	Method
GTTTAATTGGATTCGAACCAACGAC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP016380_9

>merge|NZ_CP016380|9|2297303-2297406|CRISPRCasFinder
GTTTAATTGGATTCGAACCAACGACCCCTACCATGTCAAGGTAGTGCTCTAACCAACTGAGCTATAAACCCACATCTGTGTTCAATTGGATTCGAACCAACGAC

>NZ_CP016380|9|8|2297303-2297406|CRISPRCasFinder
GTTTAATTGGATTCGAACCAACGAC	CCCTACCATGTCAAGGTAGTGCTCTAACCAACTGAGCTATAAACCCACATCTGT
GTTCAATTGGATTCGAACCAACGAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP016380.1\|WP_029302933.1\|2305151_2305340_-\|DUF4250-domain-containing-protein	unknown	unknown	gnl\|CDD\|379443
NZ_CP016380.1\|WP_011705968.1\|2288736_2289726_+\|lauroyl-Kdo(2)-lipid-IV(A)-myristoyltransferase	unknown	unknown	gnl\|CDD\|236355
NZ_CP016380.1\|WP_065477342.1\|2301744_2302923_-\|formate-dependent-phosphoribosylglycinamide-formyltransferase	unknown	unknown	gnl\|CDD\|236454
NZ_CP016380.1\|WP_039214394.1\|2304808_2304988_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP016380.1\|WP_065480549.1\|2303008_2303899_-\|DMT-family-transporter	unknown	unknown	gnl\|CDD\|223769
NZ_CP016380.1\|WP_065477332.1\|2291035_2291896_+\|kinase	unknown	unknown	gnl\|CDD\|224632
NZ_CP016380.1\|WP_005301298.1\|2300484_2300688_-\|CPXCG-motif-containing-cysteine-rich-protein	unknown	unknown	gnl\|CDD\|379524
NZ_CP016380.1\|WP_005301307.1\|2299440_2299647_-\|YaeP-family-protein	unknown	unknown	gnl\|CDD\|179901
NZ_CP016380.1\|WP_162493505.1\|2294617_2297056_+\|DNA-polymerase-II	unknown	unknown	gnl\|CDD\|235595
NZ_CP016380.1\|WP_065477329.1\|2289898_2290894_+\|lipid-A-biosynthesis-acyltransferase	unknown	unknown	gnl\|CDD\|236355
NZ_CP016380.1\|WP_060389245.1\|2287485_2288469_+\|TDT-family-transporter	unknown	unknown	gnl\|CDD\|187765
NZ_CP016380.1\|WP_065477341.1\|2300957_2301617_-\|hexitol-phosphatase-HxpB	unknown	unknown	gnl\|CDD\|236770
NZ_CP016380.1\|WP_065480544.1\|2291948_2292482_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|226489
NZ_CP016380.1\|WP_065477344.1\|2304124_2304712_+\|FMN-dependent-NADH-azoreductase	unknown	unknown	gnl\|CDD\|234675
NZ_CP016380.1\|WP_065477327.1\|2286477_2287386_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|182768
NZ_CP016380.1\|WP_065477337.1\|2297914_2299294_-\|MATE-family-efflux-transporter	unknown	unknown	gnl\|CDD\|234981
NZ_CP016380.1\|WP_065477334.1\|2292481_2293720_-\|GGDEF-domain-containing-protein	unknown	unknown	gnl\|CDD\|143635
NZ_CP016380.1\|WP_065477335.1\|2293917_2294412_-\|prolyl-tRNA-synthetase-associated-domain-containing-protein	unknown	unknown	gnl\|CDD\|239827
NZ_CP016380.1\|WP_065477326.1\|2285372_2286362_+\|Gfo/Idh/MocA-family-oxidoreductase	unknown	unknown	gnl\|CDD\|223745
NZ_CP016380.1\|WP_065477340.1\|2299777_2300395_+\|riboflavin-synthase	unknown	unknown	gnl\|CDD\|183846

Protein	Function_ID	Function_description	E-value
NZ_CP016380.1\|WP_029302933.1\|2305151_2305340_-\|DUF4250-domain-containing-protein	gnl\|CDD\|379443	pfam14056, DUF4250, Domain of unknown function (DUF4250). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are approximately 60 amino acids in length. There are two completely conserved residues (N and R) that may be functionally important.	6.03486e-22
NZ_CP016380.1\|WP_011705968.1\|2288736_2289726_+\|lauroyl-Kdo(2)-lipid-IV(A)-myristoyltransferase	gnl\|CDD\|236355	PRK08943, PRK08943, lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase; Validated.	1.51732e-128
NZ_CP016380.1\|WP_065477342.1\|2301744_2302923_-\|formate-dependent-phosphoribosylglycinamide-formyltransferase	gnl\|CDD\|236454	PRK09288, purT, formate-dependent phosphoribosylglycinamide formyltransferase.	0
NZ_CP016380.1\|WP_065480549.1\|2303008_2303899_-\|DMT-family-transporter	gnl\|CDD\|223769	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only].	2.90975e-10
NZ_CP016380.1\|WP_065477332.1\|2291035_2291896_+\|kinase	gnl\|CDD\|224632	COG1718, RIO1, Serine/threonine protein kinase involved in cell cycle control [Signal transduction mechanisms / Cell division and chromosome partitioning].	2.86948e-68
NZ_CP016380.1\|WP_005301298.1\|2300484_2300688_-\|CPXCG-motif-containing-cysteine-rich-protein	gnl\|CDD\|379524	pfam14255, Cys_rich_CPXG, Cysteine-rich CPXCG. This family of proteins is found in bacteria. Proteins in this family are approximately 60 amino acids in length. There are 5 conserved cysteines which occur in a CPXCG motif and a DCXXCCXP motif.	8.05079e-20
NZ_CP016380.1\|WP_005301307.1\|2299440_2299647_-\|YaeP-family-protein	gnl\|CDD\|179901	PRK04964, PRK04964, hypothetical protein; Provisional.	2.57504e-30
NZ_CP016380.1\|WP_162493505.1\|2294617_2297056_+\|DNA-polymerase-II	gnl\|CDD\|235595	PRK05762, PRK05762, DNA polymerase II; Reviewed.	0
NZ_CP016380.1\|WP_065477329.1\|2289898_2290894_+\|lipid-A-biosynthesis-acyltransferase	gnl\|CDD\|236355	PRK08943, PRK08943, lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase; Validated.	1.54851e-120
NZ_CP016380.1\|WP_060389245.1\|2287485_2288469_+\|TDT-family-transporter	gnl\|CDD\|187765	cd09325, TDT_C4-dicarb_trans, C4-dicarboxylate transporters of the Tellurite-resistance/Dicarboxylate Transporter (TDT) family. This subfamily contains bacterial C4-dicarboxylate transporters, which is part of the Tellurite-resistance/Dicarboxylate Transporter (TDT) family. It includes Tellurite resistance protein tehA; the tehA gene encodes an integral membrane protein that has been shown to have efflux activity of quaternary ammonium compounds. TehA protein of Escherichia coli functions as a tellurite-resistance uptake permease.	4.10987e-108
NZ_CP016380.1\|WP_065477341.1\|2300957_2301617_-\|hexitol-phosphatase-HxpB	gnl\|CDD\|236770	PRK10826, PRK10826, hexitol phosphatase HxpB.	9.84078e-129
NZ_CP016380.1\|WP_065480544.1\|2291948_2292482_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|226489	COG3981, COG3981, Predicted acetyltransferase [General function prediction only].	2.04889e-24
NZ_CP016380.1\|WP_065477344.1\|2304124_2304712_+\|FMN-dependent-NADH-azoreductase	gnl\|CDD\|234675	PRK00170, PRK00170, azoreductase; Reviewed.	8.86446e-100
NZ_CP016380.1\|WP_065477327.1\|2286477_2287386_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|182768	PRK10837, PRK10837, putative DNA-binding transcriptional regulator; Provisional.	1.96367e-80
NZ_CP016380.1\|WP_065477337.1\|2297914_2299294_-\|MATE-family-efflux-transporter	gnl\|CDD\|234981	PRK01766, PRK01766, multidrug efflux protein; Reviewed.	0
NZ_CP016380.1\|WP_065477334.1\|2292481_2293720_-\|GGDEF-domain-containing-protein	gnl\|CDD\|143635	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain. Diguanylate-cyclase (DGC) or GGDEF domain: Originally named after a conserved residue pattern, and initially described as a domain of unknown function 1 (DUF1). This domain is widely present in bacteria, linked to a wide range of non-homologous domains in a variety of cell signaling proteins. The domain shows homology to the adenylyl cyclase catalytic domain. This correlates with the functional information available on two GGDEF-containing proteins, namely diguanylate cyclase and phosphodiesterase A of Acetobacter xylinum, both of which regulate the turnover of cyclic diguanosine monophosphate. Together with the EAL domain, GGDEF might be involved in regulating cell surface adhesion in bacteria.	1.33665e-44
NZ_CP016380.1\|WP_065477335.1\|2293917_2294412_-\|prolyl-tRNA-synthetase-associated-domain-containing-protein	gnl\|CDD\|239827	cd04335, PrdX_deacylase, This CD includes bacterial (Agrobacterium tumefaciens and Caulobacter crescentus ProX, and Clostridium sticklandii PrdX) and eukaryotic (Plasmodium falciparum N-terminal ProRS editing domain) sequences. The C. sticklandii PrdX protein, a homolog of the YbaK and ProX proteins, and the prolyl-tRNA synthetase-editing domain (ProRS-INS), specifically hydrolyzes Ala-tRNA(Pro). In this CD, many of the eukaryotic editing domains are N-terminal and cis-acting, expressed from a multidomain ProRS, however, similar to the bacterial PrdX, the mammalian, amphibian, and echinoderm PrdX-like proteins are trans-acting, single-domain proteins.	2.67406e-69
NZ_CP016380.1\|WP_065477326.1\|2285372_2286362_+\|Gfo/Idh/MocA-family-oxidoreductase	gnl\|CDD\|223745	COG0673, MviM, Predicted dehydrogenases and related proteins [General function prediction only].	7.86759e-33
NZ_CP016380.1\|WP_065477340.1\|2299777_2300395_+\|riboflavin-synthase	gnl\|CDD\|183846	PRK13020, PRK13020, riboflavin synthase subunit alpha; Provisional.	2.60194e-131

>NZ_CP016380.1|WP_162493505.1|2294617_2297056_+|DNA-polymerase-II
MTCMTDHPSIPSTTPPRDGFILTRHGRDVRGRNGHGERTEIVMWLWSAQGPVRLVVPGQEPVFFLPQSHMEEAAELFKGAGVSGRFRRLPMHTFDGRAVVGCYFATLSAFHRAIELLLIRGLEHFEADIRLPERYLMERFITAGVRFEGRTLKKGGKHGYWEVNEARCAPQAVTPTLSWVSLDVECAMDGALFSVGLYSEQDARVIMIGTPEADADSWSTQVEWVADESALLSALERWFVRHDPDLVIGWNVVNFDFRLLLRRAELNKRRLRLGRGHELCFWRSSRNDPQSGSVIIPGRMVLDGIDTLKSATWQFPSYSLDAVASELLGRGKDIEDVANRGEKITELFHSDKEALARYNLEDCRLVWEIFDFCHLIPFAIERASLTGLELDRVGGSVAAFTNLYLPRLHRGGYVAPNLPADGGLASPGGYVMDSKPGLYRHVLVLDFKSLYPSIIRTFCIDPMGLIEGLQHPDHAIAGFRGALFSRERHFLPDLIATLWAARDRAKAASNKALSQAIKIIMNSFYGVLGSGGCRFYDPRLASSITLRGHGIMQQTREWIEGEGFEVIYGDTDSTFVHLGRDASPEQTDEIGRRLAKMINDNWAALIKREFNLPSYLEIQYETHYRRFLMPTIRGLEKGSKKRYAGLVAGHQAGEEEQLVFKGLESVRTDWTPLAKAFQTRLYEMVFHDQDPSGYVRTMVDETRAGQHDELLVYRKRLRQKLEEYQKNVPPHVRAARLADEENLRRGLPQRYQHRGSIAYLMTLNGPETLEYRRSAIDYEHYIDKQLRPIADAILPFIGESFERICGQQLDLF
>NZ_CP016380.1|WP_065477335.1|2293917_2294412_-|prolyl-tRNA-synthetase-associated-domain-containing-protein
MALYSLLDQLAIAYQRIDHAPVFTCEEASRLLPKLPAAKTKNLFLRDPKSERLFLVVTPEESRVDLKALAAALGVKRLSFGSPKRLESVLGLTPGAVTLLAMVRDREKAVELVVDETIWQAERVQCHPLVNTATLLIRLDDVRRLLAHLGREATVMRLPVVTSA
>NZ_CP016380.1|WP_065477334.1|2292481_2293720_-|GGDEF-domain-containing-protein
MQSLFSSAQLLSLVLFVSLSHIGVAAIFAYLWHTQRPLRSLLYWSASELAIAAAFGCLLLRTLTGDSSLANILLTNLLIIATPLLYERGLRHFFRREADRFGWLCPLLALAGFLLFAVTAAQLPPDDIHSRIVVLSGAISLQICLLLWQLWRYQRLAPAYRVLRFAILLLALQLALQLVRMAKHQWWPESAASSLTDPLLGPVILLSLLFTIARSFILLSLVHTRQQQALLATQRELERRANLDALTGLDSRHHFEQQLAARACRSARPWQLLLIDLDNFKQINDRHGHPAGDAMLRAVGQVIRESLPPAGLAGRLGGDELALLVMETSQTLPACCQTLQQRVADATRPLAGGPISLSIGLTSLQQGESFEQAYLRADRALYAAKQAGRQRACIQEPHHSEPRPLWPLATQT
>NZ_CP016380.1|WP_065480544.1|2291948_2292482_-|GNAT-family-N-acetyltransferase
MQPSIECRAARLTDAPAYRRYVAECGAAGLPLYQVAQFDPDQWLQELLAHADGLHLPPGYPPTTTYFALEGEEILATLRLRHGDNPATHHWLGHIGYETRPTRRGEGVARTLLGWLQRHVLSEPVLISCDEANAASLKVIDTAGGQWLDRRYHAGDRCWIRFYRLAPAKGPGLSGRQ
>NZ_CP016380.1|WP_065477332.1|2291035_2291896_+|kinase
MKIPNRIQPLVDDGLVDDVISRLMSGKEADVYVVRCGDEIRCAKVYKEASKRSFKQAVVYQEGRKVRGSRDARAMEKGSKYGRKQHEEVWQNTEVDALFKLAAAGVRVPRPYVCLDGVLLMELITDEDGNVAPRLNDVALSAEQAVIDHAKVIRYVVRMLCAGLIHGDLSEFNVLVDEQGPVIIDLPQVVDAAANNQAKAMLERDVNNMRNYYGMYAPELLKTRYAREMWALYEDGKLTPDSELTGLFEESREQVDLDSVLHEIESAQEEALARQARMKAEEEDSY
>NZ_CP016380.1|WP_065477329.1|2289898_2290894_+|lipid-A-biosynthesis-acyltransferase
MAAMSSHDPVFDTSFHPRLLHPRWWGSWLALGLLCLLALVPHGLRDRLANRLAPTLLRMSKKQAYIAETNLKICFPELDEAGRQALLLKSIRVGLKTFMGFAELTLRSAAHLASRVKVRGWEHIEAERAAGRPVILVVPHTWAVDMIGRYFAIRGMTMCTMMKSPKDQVFDWYINRERAKGGKIYERSVGIKPAIKAIRSGASFFYLPDQDHGREASIFVPFFGHPKATLPALPKLVKLTGARAVPILACYDEEEGCYRLEIEPPFDPYPGADLVADVCAMNGMVEQQLRQHPEQYMWFLKIFETMEHQQGSDGFYEEGIKRIRGDLPPGE
>NZ_CP016380.1|WP_011705968.1|2288736_2289726_+|lauroyl-Kdo(2)-lipid-IV(A)-myristoyltransferase
MSSHDPVFDTRFEARFLHPRYWLSWLALGVLMLLAFVPVRLRDRLAAALAPLVFRISKKQIYIARTNLALCFPQKSEAERDAILMTSIRVGLKSLLGFGEFSVRSPAYLMSRMQVSGWEHIEAEQAAGRPVILVVPHSWPVDAAGYYFTRRGVPMCTMMKRARNPVFDWHLNRARARNGCRVYERSAGIKAVIRTIKGGRSFFYLPDQDHGREKSIFAPFFGHPKATLPALPRLVQVSGAKAVPLLACYDEAKHCYRLEIDAPFDNYPTEDVMADTCRMNDMVQQQLCRDPGQYMWFLKIFDTREDQVGLDGRYEAGIQRIRSGLQPLP
>NZ_CP016380.1|WP_060389245.1|2287485_2288469_+|TDT-family-transporter
MIARTRQSLGKAPTPMAGLALGIASLGWCWENAGHFDGRLQLLGAAIAAVLLVILTFKFLLHPRLLWQDLAHPVVGSVVPTYAMGTMVVSKAVGMLDAGLGEGLWLFAVLLHLAFLATFVWHRAKQFEIHHMVPSWFVPPVGIIVADVAFPGGQFAALANGLLWFGMLCYGLMLPLMLYRLIFSHEVPDAAKPTIAILAAPASLSLAGYLTVSEEPSLLLVAVLLGIAVLMTGIIYLAFIKLLRLPFSPGYAAFTFPLVIGATALFKVSHLVEQWPQAAEYVEQIRLLAHFELGAATLIVGYVALRYLMFFLPLGGSDEMAHGMVRR
>NZ_CP016380.1|WP_065477327.1|2286477_2287386_-|LysR-family-transcriptional-regulator
MKLTLQQLKVFATIARYGNLGLAANELCLSKGAVSQSLQELERQLATPLFDRIHPRLQLNNEGRLLQPAAEELLTRMQDIETLFSPDAEPSGQLRLGASQTIGNYLLPALLATSKQELGQPPRVTITNTHQLCHLLANFELDLALIEGENHHPDLVSEPWLHDEMLIVAQPAHPLAGRSRLSLAQLSDETWVLREPQSGSREQFEQQIQPELPRWQAGLELNTLEAVMLAVEKGLGISFISHLAVSDRLQAGRLVALPLTRRFPRQLSLIWHRQKYHSATLRRFLQFCRAQEDVLHSDASHT
>NZ_CP016380.1|WP_065477326.1|2285372_2286362_+|Gfo/Idh/MocA-family-oxidoreductase
MQQRSSDQPLRWGIAGAGAIARRFCQDVNGHASGSQVVAIAARDQARSQAFANEQGLPHAYGSYQALAANPQVEAVYVAVIHPEHAALIELMLLAGKHVLVEKPAVTRVVDWDRLVRLAAERGLLLMEAMKVMCFPAMRELLGRLAALPAPDRLRAAFGSVQARDGKLFDPALAGGAAWDVGVYPLWLYAALCHQLGLAAGEPEVTLSRQEGEVDEAARFDFAGPLKAELAASIVADLDKSAWLSGPGWALELVGKWWSPQQIVWRGGDPLPAWPHDIALPVGGGGMQHEADHFAACVREGLSDSPWVPQALSRQVLGWVERGLQPAKR
>NZ_CP016380.1|WP_065477337.1|2297914_2299294_-|MATE-family-efflux-transporter
MQRYWSEARQLVRLASPILVAQVAQVAMSFVDTVMAGQVSAVDLAAVSVASSFWLPIILLTQGIIMALTPIVSQLNGARKRDEVRPAVHQGFWLALMVIPIAMLALYFSPLALHLMKVDPVMAAKTTGFLHAIMWGLPAFVLFQVLRNFSEGLSHTMPTMVIGFVGLAVNIPANYVFIHGHLGMPKLGGVGCGVATAIVLWAMLLAMIVYVKLSSHFKEINLFSRLARPNGSRIWRLFRLGFPIAMAIFCEVTLFTVVALMLAPFGAETVASHQIALNFSSLVFMLPLSIGVGVTIRVGHSIGEGQPEHARVAARTGLMLGMAVAAGTAALTVLLREHIASIYTDDLQVITLAAILLFFAAIYQISDSVQVVAAAALRGYKDTKAIFYVTIVAYWGLGLPTGMILGLTDWVVPRMGPQGFWIGFIVGLTGAALMLGARLRHIYGRFASPEACSALSKAQ
>NZ_CP016380.1|WP_005301307.1|2299440_2299647_-|YaeP-family-protein
MQVYQCCEAIRIAYNQIGSGEQGYVPQAIAATIRALNAVASDERVPADLREQAAYAAANLLISDHEDA
>NZ_CP016380.1|WP_065477340.1|2299777_2300395_+|riboflavin-synthase
MFTGIVQGTAELVAIDELPNFRTHVIRMPSPAWGEGLALGASVAHNGCCLTVTRVEGELVSFDLMQETLRLTNLGQLQPGDKVNVERAARFGDEIGGHAMSGHIMGTAQVVSVIDTPNNRQVWYRLAPTLMKYVLTKGYIGIDGISLTVGEVRANEFCVNLIPETLARTNLGWVKAGWHTNIEIDPQTQAIVDTVERVLAARQPG
>NZ_CP016380.1|WP_005301298.1|2300484_2300688_-|CPXCG-motif-containing-cysteine-rich-protein
MIEYTSKRIVCPHCGHHTRVELDASQGDQEFYEDCMACCNPIHLRLHRDEARDCLQLFVDADDEQMF
>NZ_CP016380.1|WP_065477341.1|2300957_2301617_-|hexitol-phosphatase-HxpB
MLTAVIFDMDGVLIDSEPFWQRAQMAVFSELGHPHTVEDCESTIGVRIDQLVAHWYRLRPWSGPSQEEVVQRILDRVNALILSEGQAKAGVLEALDLIEARGLKVGLATSSPFAMVEAVLGKLGIRDRFLAVHSAEVERFGKPHPDVYIHAAEKLGVEPVHCLAIEDSFTGLLAAKAASMKALIVPDPALVGDPRLAIADHQLRSLTELDAKMLANWTK
>NZ_CP016380.1|WP_065477342.1|2301744_2302923_-|formate-dependent-phosphoribosylglycinamide-formyltransferase
MFGTATRPGATRALLLGSGELGKEVAIELQRFGIEVIAADRYADAPAMQVAHRAHVLDMLDGDALRALVNEVKPDLIIPELEAIATDTLAALEQEGVKVVPNARATQLTMNREGIRRLAAETLGLPTSPYRFAQSKEEFVAAVDTIGLPCVVKPVMSSSGKGQSVLRDLAKLDESWTHAQEGGRAGRGKVIIEGFVPFEYEITLLTVRAVDGIHFCQPIGHRQEDGDYRESWQPQAMSELALARSKEVAAKVVEALGGYGLFGVELFIRGDEVWFSEVSPRPHDTGMVTLISQDLSEFALHVRAILGLPVGTITQYGPSASAVVLREGHSQNIRYQGIGEALALVPGAQLRLFGKPEIAGRRRLGVALARAEDCPTAVEQAKAVAARVDVLF
>NZ_CP016380.1|WP_065480549.1|2303008_2303899_-|DMT-family-transporter
MTPSRRHSPFAGAVWMMVAGLCFAAVNSLSQYVSFKLGLPSTQVAFHQYLIALVCLLPWLVRHGLRQSLMTNQLRLHLLRVALAVVGIQFWLWALAVPVPIWQGIALLMTSPLFATLGSALFLKEQVSRARILATLAGFVGAMLILAPWTDDFSWASLLPVAAALFWAGYSLLVRYQAASESSHTIVVYLLIFSTPFNAMLALPEWQWPSETQWLLVAASGVLSALAQMSIARAYSVAEASFVQPFDFAKLPMNVLAGWLVFGWAPPGRLWLGAAIIIGAITLLTHLEQRAHKSVS
>NZ_CP016380.1|WP_065477344.1|2304124_2304712_+|FMN-dependent-NADH-azoreductase
MANILVLKSSILGQYSQSNALIDGFLADHPSDTVTVRDLASLNLPVLDGELAMGLRGGENLNDRQLAVLAQSDELVAELKASDLVVIAAPMYNFNIPTQLKNWIDLVARAGVTFRYTETGPVGLVENTRALVISPRGGMHVGSATDLVTPYMRTVLGFIGIKDVDFIYAEGMGMGPDAQAKGIEQAKGQLETLAL
>NZ_CP016380.1|WP_039214394.1|2304808_2304988_-|hypothetical-protein
MMFLTRPTSLITLCALLMISLLSPRLPDSAEQWLTTLLLGSLVAVCLMVGSGCRRFLRD
>NZ_CP016380.1|WP_029302933.1|2305151_2305340_-|DUF4250-domain-containing-protein
MNLNNFATMDVNMLLSLVNMQLRDRFDDLDDLCKAQDLDKEALVARLASGDFHYQEDQKQFR

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Crispr_ID: NZ_CP016380_10

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP016380_10

3571426-3571544

Orphan

Consensus_repeat	Method
ATCTGCCGGCGCTGGGATGCCCACAGCTGACGGCGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP016380_10

>merge|NZ_CP016380|10|3571426-3571544|CRISPRCasFinder
ATCTGCCGGCGCTGGGATGCCCACAGCTGACGGCGGCGCAGTGTCAACACACCTTGCACAAGGTACGGCGACGGTTGCACCAGATCTGCCAGCGCTGGGATGCCCACAGCTGACGGCGG

>NZ_CP016380|10|9|3571426-3571544|CRISPRCasFinder
ATCTGCCGGCGCTGGGATGCCCACAGCTGACGGCGG	CGCAGTGTCAACACACCTTGCACAAGGTACGGCGACGGTTGCACCAG
ATCTGCCAGCGCTGGGATGCCCACAGCTGACGGCGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP016380.1\|WP_010633228.1\|3580493_3581294_-\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|225464
NZ_CP016380.1\|WP_016351591.1\|3563158_3563713_+\|YqgE/AlgH-family-protein	unknown	unknown	gnl\|CDD\|234694
NZ_CP016380.1\|WP_016351589.1\|3560350_3561304_+\|glutathione-synthase	unknown	unknown	gnl\|CDD\|235371
NZ_CP016380.1\|WP_029304178.1\|3559572_3560304_+\|16S-rRNA-(uracil(1498)-N(3))-methyltransferase	unknown	unknown	gnl\|CDD\|224303
NZ_CP016380.1\|WP_011706929.1\|3577365_3577746_+\|autonomous-glycyl-radical-cofactor-GrcA	unknown	unknown	gnl\|CDD\|213978
NZ_CP016380.1\|WP_016351598.1\|3573799_3574750_+\|transaldolase	unknown	unknown	gnl\|CDD\|235381
NZ_CP016380.1\|WP_065478792.1\|3561414_3563040_-\|methyl-accepting-chemotaxis-protein	unknown	unknown	gnl\|CDD\|223910
NZ_CP016380.1\|WP_065478813.1\|3579464_3580319_-\|3-deoxy-8-phosphooctulonate-synthase	unknown	unknown	gnl\|CDD\|235363
NZ_CP016380.1\|WP_011706927.1\|3575145_3575694_-\|hemerythrin-domain-containing-protein	unknown	unknown	gnl\|CDD\|226454
NZ_CP016380.1\|WP_065478798.1\|3566249_3567398_-\|FOX/MOX-family-class-C-beta-lactamase	unknown	unknown	gnl\|CDD\|236894
NZ_CP016380.1\|WP_017409175.1\|3581305_3581689_-\|SirB2-family-protein	unknown	unknown	gnl\|CDD\|377264
NZ_CP016380.1\|WP_065478810.1\|3577877_3579158_-\|dicarboxylate/amino-acid:cation-symporter	unknown	unknown	gnl\|CDD\|234968
NZ_CP016380.1\|WP_016351599.1\|3574910_3575093_+\|DUF3545-family-protein	unknown	unknown	gnl\|CDD\|371878
NZ_CP016380.1\|WP_065478803.1\|3568508_3569495_+\|DUF58-domain-containing-protein	unknown	unknown	gnl\|CDD\|224635
NZ_CP016380.1\|WP_065478795.1\|3564229_3565735_-\|dipeptide/tripeptide-permease-DtpB	unknown	unknown	gnl\|CDD\|182306
NZ_CP016380.1\|WP_011706925.1\|3571613_3573056_-\|alanine:cation-symporter-family-protein	unknown	unknown	gnl\|CDD\|376500
NZ_CP016380.1\|WP_011706917.1\|3563759_3564182_+\|Holliday-junction-resolvase-RuvX	unknown	unknown	gnl\|CDD\|234639
NZ_CP016380.1\|WP_065478800.1\|3567588_3568509_+\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|223786
NZ_CP016380.1\|WP_011706928.1\|3575852_3576521_-\|uracil-DNA-glycosylase	unknown	unknown	gnl\|CDD\|235376
NZ_CP016380.1\|WP_147822873.1\|3565851_3566076_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP016380.1\|WP_010633228.1\|3580493_3581294_-\|tetratricopeptide-repeat-protein	gnl\|CDD\|225464	COG2912, COG2912, Uncharacterized conserved protein [Function unknown].	1.93414e-56
NZ_CP016380.1\|WP_016351591.1\|3563158_3563713_+\|YqgE/AlgH-family-protein	gnl\|CDD\|234694	PRK00228, PRK00228, YqgE/AlgH family protein.	8.82141e-90
NZ_CP016380.1\|WP_016351589.1\|3560350_3561304_+\|glutathione-synthase	gnl\|CDD\|235371	PRK05246, PRK05246, glutathione synthetase; Provisional.	0
NZ_CP016380.1\|WP_029304178.1\|3559572_3560304_+\|16S-rRNA-(uracil(1498)-N(3))-methyltransferase	gnl\|CDD\|224303	COG1385, COG1385, Uncharacterized protein conserved in bacteria [Function unknown].	6.2182e-98
NZ_CP016380.1\|WP_011706929.1\|3577365_3577746_+\|autonomous-glycyl-radical-cofactor-GrcA	gnl\|CDD\|213978	TIGR04365, Autonomous_glycyl_radical_cofactor, autonomous glycyl radical cofactor GrcA. This small protein, previously designated YfiD in E. coli, is closely homologous to pyruvate formate_lyase (PFL) in a region surrounding the stable glycyl radical that is prepared by the action of pyruvate formate-lyase activase, a radical SAM enzyme. When damage at the site of this radical breaks the main chain of PFL, this protein acts as a spare part that reintroduces the needed stable glycyl radical. Cutoffs for this model are set to exclude a set of closely related phage proteins that appear to have a corresponding function.	7.55534e-83
NZ_CP016380.1\|WP_016351598.1\|3573799_3574750_+\|transaldolase	gnl\|CDD\|235381	PRK05269, PRK05269, transaldolase B; Provisional.	0
NZ_CP016380.1\|WP_065478792.1\|3561414_3563040_-\|methyl-accepting-chemotaxis-protein	gnl\|CDD\|223910	COG0840, Tar, Methyl-accepting chemotaxis protein [Cell motility and secretion / Signal transduction mechanisms].	3.68215e-67
NZ_CP016380.1\|WP_065478813.1\|3579464_3580319_-\|3-deoxy-8-phosphooctulonate-synthase	gnl\|CDD\|235363	PRK05198, PRK05198, 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional.	0
NZ_CP016380.1\|WP_011706927.1\|3575145_3575694_-\|hemerythrin-domain-containing-protein	gnl\|CDD\|226454	COG3945, COG3945, Uncharacterized conserved protein [Function unknown].	2.87285e-18
NZ_CP016380.1\|WP_065478798.1\|3566249_3567398_-\|FOX/MOX-family-class-C-beta-lactamase	gnl\|CDD\|236894	PRK11289, ampC, beta-lactamase/D-alanine carboxypeptidase; Provisional.	0
NZ_CP016380.1\|WP_017409175.1\|3581305_3581689_-\|SirB2-family-protein	gnl\|CDD\|377264	pfam04247, SirB, Invasion gene expression up-regulator, SirB. SirB up-regulates Salmonella typhimurium invasion gene transcription. It is, however, not essential for the expression of these genes. Its function is unknown.	2.13229e-25
NZ_CP016380.1\|WP_065478810.1\|3577877_3579158_-\|dicarboxylate/amino-acid:cation-symporter	gnl\|CDD\|234968	PRK01663, PRK01663, C4-dicarboxylate transporter DctA; Reviewed.	0
NZ_CP016380.1\|WP_016351599.1\|3574910_3575093_+\|DUF3545-family-protein	gnl\|CDD\|371878	pfam12065, DUF3545, Protein of unknown function (DUF3545). This family of proteins is functionally uncharacterized. This protein is found in bacteria. Proteins in this family are typically between 60 to 77 amino acids in length. This protein has two completely conserved residues (R and L) that may be functionally important.	5.50267e-11
NZ_CP016380.1\|WP_065478803.1\|3568508_3569495_+\|DUF58-domain-containing-protein	gnl\|CDD\|224635	COG1721, COG1721, Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain) [General function prediction only].	1.27975e-12
NZ_CP016380.1\|WP_011706925.1\|3571613_3573056_-\|alanine:cation-symporter-family-protein	gnl\|CDD\|376500	pfam01235, Na_Ala_symp, Sodium:alanine symporter family.	0
NZ_CP016380.1\|WP_011706917.1\|3563759_3564182_+\|Holliday-junction-resolvase-RuvX	gnl\|CDD\|234639	PRK00109, PRK00109, Holliday junction resolvase RuvX.	4.79324e-71
NZ_CP016380.1\|WP_065478800.1\|3567588_3568509_+\|AAA-family-ATPase	gnl\|CDD\|223786	COG0714, COG0714, MoxR-like ATPases [General function prediction only].	3.98623e-81
NZ_CP016380.1\|WP_011706928.1\|3575852_3576521_-\|uracil-DNA-glycosylase	gnl\|CDD\|235376	PRK05254, PRK05254, uracil-DNA glycosylase; Provisional.	5.17803e-149
NZ_CP016380.1\|WP_065478795.1\|3564229_3565735_-\|dipeptide/tripeptide-permease-DtpB	gnl\|CDD\|182306	PRK10207, PRK10207, dipeptide/tripeptide permease DtpB.	0

>NZ_CP016380.1|WP_065478803.1|3568508_3569495_+|DUF58-domain-containing-protein
MNWRQRRARWQQGWLARRILPARQITLQGRCLFILPTRLGLWYLLVMLAIYLLGTNYQNNLVLLVAYGLGSLFMVTMWLTHRNLLGLSLLGGPALLGEAGSPLPIPITVRSERPLQALQFSLNEGRLWLAQVDAVPQPLLLPVLGTRRGRLPLERLRVESRYPLGLFRCWTLLDLQLEGWLAPAPEYGPLRGEATADAAGSRGQPTPASMGDFDMLRAHQSGEPLSRVAWKQLAQGRGLLVKQFCEPGQDDTHLSLQRVGGRDLEQRLAVLAWWCDDYAKRGIPFSLTLASQTLGPDSGAAFLQRCRLALARVDAIEPTQETDLDAAR
>NZ_CP016380.1|WP_065478800.1|3567588_3568509_+|AAA-family-ATPase
MQTQPQITRLLTALEQAILGKPLQLKIALVTLLARGHLLIEDLPGMGKTTLAHALAQVLGLDCRRVQFTADLLPADLLGLQIFDPHQQQFRFHPGPVFAQVLLADEINRASPKVQSALLEAMAEGKVSIEGESHPLPSPFFVIATQNPADQAGTYPLPESQLDRFAVRLSLGFPTPEAERRLLRGASQIAPLERQLSAVELAALQAEAAQIHLSDASLDYLLALVQQSRFDADLPQPLSPRAAQTLLAVSRAWALVAGRRFVSVEDVQAVFPYVAEHRLRGSFGVQRGEACPLSQRLLARVDPDRP
>NZ_CP016380.1|WP_065478798.1|3566249_3567398_-|FOX/MOX-family-class-C-beta-lactamase
MKQTRALPLLALGTLLLAPLALAAPVDPLKAVVDDAIRPVLKQHRIPGMAVAVLKGGQAHYFNYGLADVATGTKVNEQTLFEIGSVSKTYTATLGAYAVVKGGFKLDDKVSRHAPWLKGSAFDGITMAEVATYSAGGLPLQFPDEVDSSDTMRAYYRHWTPAYQPGSHRQYSNPSIGLFGHLAANSLQQPFAHLMEQTLLPALGLEHTYLQVPEVAMARYAFGYSKEDKPIRVNPGMLADEAYGIKTGSADLLAFVKANISGVDDKALQQAISLTHTGFYRVGEMTQGLGWESYAYPVSEQTLLAGNSPAVSLKANPVTKFETPAAPGAMRLYNKTGSTGGFGAYVAFVPAKGIGIVMLANRNYPIEARVSAAHAILSQLVP
>NZ_CP016380.1|WP_147822873.1|3565851_3566076_-|hypothetical-protein
MIGYWFALMAVSYHAICLFFGFYDCRENVGCAMTATSGCQPVAKRLLNVVPNMKPPDPHLIVSGAIRLILSPAS
>NZ_CP016380.1|WP_065478795.1|3564229_3565735_-|dipeptide/tripeptide-permease-DtpB
MRPSAPTGLLQQPKPFFMIFFVELWERFGYYGVQGILAVFFVQQLGFSQEQSFITFGAFSALVYGLISVGGYVGDHVLGTKRTMVLGAIVLVIGYFMTGMSIYNPDLIFYALGTIAVGNCLFKANPASLLAKCYERGDPRLDGAFTLFYMSINIGSLISLSLAPVIADHYGYTVTYNLCGVGLVIALLTFFACRHMVRDIGSEPDHLPLDYGKLLLVLLGSVALVFFCAWLMHHVVIANMVLMTVTLAVVIFFFREAFKLDTVARNKMYVAFVLMLEAVVFYVLYAQMPTSLNFFAINNMHHEMLGMSINPISFQALNPFWVVVGSPVLAMIYTRLGSKGRDLTMPLKFTLGMLFCSLGFLTAAASGIWFADAQGLTSPWFMVLIYLFQSLGELMISALGLAMVAALVPQRLMGFILGMWFLTQAMASLLGGYVATFTAVPQGVTDPLQTLPIYTDVFGKIGLVTLLVAVVMALMVPWLNRMMHTGQGEEGESLLSQQAKA
>NZ_CP016380.1|WP_011706917.1|3563759_3564182_+|Holliday-junction-resolvase-RuvX
MSSRSIMGFDYGTKSIGVAIGQELTGTAQPLRAIKANDGIPNWDDIDKLLKEWQPDLLVVGLPLNMDGTEQEITVRARKFGNRLHGRFGKQVEFKDERLTTTDARARLFERGGYRALEKGSVDGVSAQLILEAWMEEQYG
>NZ_CP016380.1|WP_016351591.1|3563158_3563713_+|YqgE/AlgH-family-protein
MQTLQNHFLLAMPSLSDPYFERSLVYLCEHSEEGAMGLVVNIPVDMSLDAMLTQLKLAPPPSPELKQPVLQGGPVHADRGFVLHSFRPGFNSTLQVGDELMVTTSKDILETLGTEEAPAHWLVALGYAGWSAGQLEQELVDGAWLVIPPNPDLVFKTPIHQRWQQAAASIGVNPIHLSSDIGHS
>NZ_CP016380.1|WP_065478792.1|3561414_3563040_-|methyl-accepting-chemotaxis-protein
MEGISIRQKLILGCVVPLLALVLLVIGAVQAMSQLMTGMNSMYQGEVVQLKELKQIADLYAVKVIDAANKANVGGFDPARSRTDMSAAQQEIKRIWQDYRSQPMSQAEQREADQMQGLFAAADREIEAVMQILADMQGSNQGQLAAHIMPLYRVIDPVSDGISALVEYQLKEAEKSMTELNGLRVQLNRLFVLLLVVGGACILFFGVWAGRSVSQPLAAMGGILRGMQTDLDLSKLAPVLRKDEMGGLAHSLNEVICHFRELITQINGMAEQLARESAQLAHIGVESRQRFAQQQAETDQTATAMNQMSATVAEVANSSNNAADAAHHADGSARHGHQIVADAIQCMSGLSAQIQNTAAMITQLADDSRNISSVMDAIRGIAEQTNLLALNAAIEAARAGDQGRGFAVVADEVRTLAQRTQRSTEEIGKTIVKLQQGATQAASSMELGLDQVEQSNRTVLACGQALGEIVSSVNVINEMNTHIATAAEEQSKVAEDISRNVVNIAHIASESTQAASQLNQSCHELEQLSSELKVKVGQFRC
>NZ_CP016380.1|WP_016351589.1|3560350_3561304_+|glutathione-synthase
MTIKLGIVMDPISAINIKKDSSFAMLEEAQKRGYELFYLEMKDLYMEAGRAFGTMRPLTVKYDYADWYSLGEVVDQPLSSLDVILMRKDPPFDTEFIYATYMLERAEDEGCLIVNKPQSLRDANEKLYTAWFAEHTPTTLVTRRADKLRAFHAKHKDVILKPLDGMGGASIFRMKEDDANVGVIIETLTEHGSQYCMAQTYLPAIKDGDKRVLVVDGEPVPYCLARIPAQGETRGNLAAGGRGEARPLSEADWAIARAVGPTLKEKGLIFVGLDIIGDRLTEINVTSPTCIREIEAAFDVHITGMLMDAIERRLAKA
>NZ_CP016380.1|WP_029304178.1|3559572_3560304_+|16S-rRNA-(uracil(1498)-N(3))-methyltransferase
MRIPRIYEPAALQVGQTLALSEDGANHIGRVLRMQPGQQLELFNGDGNQYPATIANVGKKSVEVTIDSCDTRSVESPLAIHLGQVISRGDKMDFTIQKSVELGVTCITPLFSERCGVKLPADRLEKKREQWQKVVISACEQCGRNTVPEVRMPMELDAWLAEETQELKLNLHPRAPYSINTLPIPEHGVRLLIGPEGGLSSDEIARTVQEDFKEMLLGPRVLRTETAALTAITALQCRFGDLA
>NZ_CP016380.1|WP_011706925.1|3571613_3573056_-|alanine:cation-symporter-family-protein
MDTLIAMINDLMWGAVLIYLLIGVGIFFTFRLGFIQIRHFGHMFSVLRNSRKSDNAGISSFQALCTSLAARVGTGNLAGVAVAIYLGGPGAIFWMWLIAFIGMATAFVESTLAQLYKVKDEDGNYRGGPAYYMEKGLGMRWMGVLFSLCLILAFGLVFNAVQANSISLAMNVAFGIPDWVSGLALVVLSGLIIFGGIRGIARFAELVVPFMALAYILMALFVVAMNISELPGVFSLIIKSAFGLEQAGSGALGYAISQAMINGIKRGLFSNEAGMGSAPNAAATATPYPPHPASQGYVQMLGVFLDTIVICTCTAAIILMSGQFEPGSGITGVELTQRALSSQIGGGGNIFIAAAIFFFAFTSIVANYSYAETNLVFLEHNHKGGLMLFRMFVLGMVMFGSVGELPTVWAMADVSMGLMAIVNLVAILLLSGVAIKLARDYNDQLKLGKVPTFDANKYPEIRSQLEEGIWDNPAQNSKQA
>NZ_CP016380.1|WP_016351598.1|3573799_3574750_+|transaldolase
MADKLTQLKALTTVVADTGDIEAIKRYQPIDATTNPSLVLKASEIPEYAALIEDAINWAKAQSQDKAQQIIDAGDKLAVNIGLEVLKIVPGRISTEVDARLSFDTQASIAKARKLIRLYNEAGISNDRILIKLASTWEGIRAAEVLEKEGIQCNLTLLFSFAQARACAEAGAFLISPFVGRILDWYKAKHNRDYTASEDPGVVSVTSIYDYYKQHDYPTVVMGASFRNTGEILELAGCDRLTIGPALLEELSKTEGAVVRKLNYTGERKAKPAPMTEAEFRWELNQDAMAHEKLGEGIRMFAIDQGKLETMLASRL
>NZ_CP016380.1|WP_016351599.1|3574910_3575093_+|DUF3545-family-protein
MEMFNFEYDDVVELGSRSRGTTGKKRKWREIEALKDKHRLQKELQSIDIAYEGLSDEIEL
>NZ_CP016380.1|WP_011706927.1|3575145_3575694_-|hemerythrin-domain-containing-protein
MLASLHKDHLNIARLLDLLKHKLAAIRDEQRVSYFLIRDVVDYLREVSDKYHHPKEDIIYDYYLKYRVVEGDVANRLQAEHAKLLEAGAELKEMVEMILMDAVIPLDQFTAKLEQFVALQEAHMNYEEGVIFPHLRDSLTEDDWRHLEQIWQNRAIGDPLFGPEISQHFQALAKRLSLPLSS
>NZ_CP016380.1|WP_011706928.1|3575852_3576521_-|uracil-DNA-glycosylase
MQTWTDVIGSEKEQDYFKATLATVRSEREAGKVIYPPATDVFNAFKLTELDQVKVVILGQDPYHGPNQAHGLCFSVLPGVRTPPSLVNIYKEMQRDLPGFVTPSHGFLESWAKQGVLLLNTVLTVQAGQAHSHAHLGWETFTDRVIEQINASCQGVVFLLWGAHAQKKGRFIDRQRHHVLSAPHPSPLSAHRGFIGCGHFSETNRLLSQQGMSPINWHSVCE
>NZ_CP016380.1|WP_011706929.1|3577365_3577746_+|autonomous-glycyl-radical-cofactor-GrcA
MIKGIQITQSANAALLNSFWLLDEEKQQARCICAKGDTFAADQEVSVSDLGQFEYRELPVQAEPAVEGGQHLNVNVLRRETLEDAIANPEKYPQLTIRVSGYAVRFNALTPEQQRDVVTRTFTQSL
>NZ_CP016380.1|WP_065478810.1|3577877_3579158_-|dicarboxylate/amino-acid:cation-symporter
MQKKIVSSLYFQVLLAITLGVILGHIYPDLGADMKPLGDGFVKLIKMIIAPVIFCTVVTGIAGMESMKAVGKTGAIALLYFEVVSTIALIIGLCVVNLLQPGAGMNVDPATLDASAISAYAEQAKAQGIIPFLLDVIPGSVIGAFASGNILQVLLFAVLFGFSLHHIGEKGKVIFNVIDSFSQVIFGIINMIMRLAPFGAFGAMAFTIGKYGIGSLVQLGQLIACFYMTCLLFIFLVLGSIARANGFSILRFISYIREELLIVLGTSSSESVLPRMLVKMEALGCKKSVVGLVIPTGYSFNLDGTSIYLTMAAIFIAQATNTPLDLFQQITLLVVLLISSKGAAGVTGSGFIVLAATISAVGHLPLAGLALILGIDRFMSEARALTNLIGNGVATLVVARYCDQLDEQQMHEALSNPPQAVKLDQH
>NZ_CP016380.1|WP_065478813.1|3579464_3580319_-|3-deoxy-8-phosphooctulonate-synthase
MEQKNIKVNGIDVANDKPFVLFGGMNVLESRDMAMAVCEKYVEVTSKLGIPFVFKASWDKANRSSIHSYRGPGLEEGMKIFQELKATFGMPVISDLHEPHQAKPVAEVVDVIQLPAFLARQTDLVEAMARTGNVINIKKPQFLSPSQMKNITDKFEECGNDRLILCERGANFGYDNLVVDMLGLGVMKKSTCGYPVIFDVTHSLQCRDPMGAASGGRREQVTELARAGMAVGLAGLFIESHPDPKIARCDGPSALPLEKLEGFLKQMKAIDDLIKGFEPLDTSI
>NZ_CP016380.1|WP_010633228.1|3580493_3581294_-|tetratricopeptide-repeat-protein
MIRVDEWTDFEAHDIAELALSVSDEIHGISGRGTAELARLDAWLDEAIEEGDCDQVRRQLLQGFYQTLGFHGDWQDYFSVANCDLAQVLARKQGIPVSLGILIIQLGRKLGLDVEGICFPGHFLVSFAGSEGEVYVDPFTGDELSLHHIELLLRGALGNLATLSSDHLQPAGQWEIIERLLNVSKGALLREDRMTEALRCSELLLRMKPGDPLETRDRGFIYEQLDCPRFAADDFEYFIEQCPDDPVADVLKAQLAALDLSPKPLH
>NZ_CP016380.1|WP_017409175.1|3581305_3581689_-|SirB2-family-protein
MYFAIKHLHLLLIGLAVLMFMLRFYWLQTGSSRAASARTLRLSGWLNGLVVLSGVLLCMVLDLNPLNNATPWLSEKLTAILVVAFLAMMALRLARSNGIRWFAFLGALGWVFFIAKLAVYKQASLFG

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Crispr_ID: NZ_CP016380_11

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP016380_11

3811197-3811338

Orphan

Consensus_repeat	Method
CATCAAGACCATGATGGCCTGTAAAAAGGTGGGTTTGCCGGT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP016380_11

>merge|NZ_CP016380|11|3811197-3811338|CRISPRCasFinder
CATCAAGACCATGATGGCCTGTAAAAAGGTGGGTTTGCCGGTATCAGGGAGTTAAGGGAACCCGCGCCTGCAAAGTGCCCATAAAAATGAAGCCCAACGCCATCAAGACCATGGTGGCCTGTAAAAAGGTGGGTTTGCCGGT

>NZ_CP016380|11|10|3811197-3811338|CRISPRCasFinder
CATCAAGACCATGATGGCCTGTAAAAAGGTGGGTTTGCCGGT	ATCAGGGAGTTAAGGGAACCCGCGCCTGCAAAGTGCCCATAAAAATGAAGCCCAACGC
CATCAAGACCATGGTGGCCTGTAAAAAGGTGGGTTTGCCGGT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP016380.1\|WP_016351748.1\|3801243_3801693_+\|type-II-3-dehydroquinate-dehydratase	unknown	unknown	gnl\|CDD\|235443
NZ_CP016380.1\|WP_016351764.1\|3821634_3822834_+\|sodium/glutamate-symporter	unknown	unknown	gnl\|CDD\|129314
NZ_CP016380.1\|WP_065479083.1\|3801729_3802185_+\|acetyl-CoA-carboxylase-biotin-carboxyl-carrier-protein	unknown	unknown	gnl\|CDD\|235777
NZ_CP016380.1\|WP_065479096.1\|3819579_3819873_+\|DUF1315-family-protein	unknown	unknown	gnl\|CDD\|225681
NZ_CP016380.1\|WP_043167201.1\|3812317_3814333_-\|NADPH-dependent-2,4-dienoyl-CoA-reductase	unknown	unknown	gnl\|CDD\|239240
NZ_CP016380.1\|WP_011707130.1\|3820112_3821120_-\|asparaginase	unknown	unknown	gnl\|CDD\|181876
NZ_CP016380.1\|WP_016351749.1\|3803653_3803932_+\|YhdT-family-protein	unknown	unknown	gnl\|CDD\|377626
NZ_CP016380.1\|WP_065479085.1\|3805477_3806905_+\|PTS-transporter-subunit-EIIC	unknown	unknown	gnl\|CDD\|273920
NZ_CP016380.1\|WP_011707125.1\|3817110_3817911_-\|DUF2989-domain-containing-protein	unknown	unknown	gnl\|CDD\|371419
NZ_CP016380.1\|WP_010675412.1\|3809422_3810301_+\|50S-ribosomal-protein-L11-methyltransferase	unknown	unknown	gnl\|CDD\|283886
NZ_CP016380.1\|WP_017409325.1\|3823017_3824889_-\|methyl-accepting-chemotaxis-protein	unknown	unknown	gnl\|CDD\|223910
NZ_CP016380.1\|WP_065016756.1\|3810531_3811095_+\|sugar-O-acetyltransferase	unknown	unknown	gnl\|CDD\|100047
NZ_CP016380.1\|WP_016351752.1\|3806907_3807780_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176114
NZ_CP016380.1\|WP_065479088.1\|3807880_3808897_+\|zinc-binding-alcohol-dehydrogenase-family-protein	unknown	unknown	gnl\|CDD\|176214
NZ_CP016380.1\|WP_017409322.1\|3818108_3819539_+\|glyceraldehyde-3-phosphate-dehydrogenase	unknown	unknown	gnl\|CDD\|236219
NZ_CP016380.1\|WP_065479094.1\|3816546_3817104_-\|NUDIX-domain-containing-protein	unknown	unknown	gnl\|CDD\|240042
NZ_CP016380.1\|WP_011707113.1\|3802200_3803541_+\|acetyl-CoA-carboxylase-biotin-carboxylase-subunit	unknown	unknown	gnl\|CDD\|236307
NZ_CP016380.1\|WP_049048228.1\|3814643_3816488_+\|signal-peptide-peptidase-SppA	unknown	unknown	gnl\|CDD\|182860
NZ_CP016380.1\|WP_017409311.1\|3803921_3805400_+\|sodium/pantothenate-symporter	unknown	unknown	gnl\|CDD\|236519
NZ_CP016380.1\|WP_065479091.1\|3811662_3812211_-\|NAD(P)H-nitroreductase	unknown	unknown	gnl\|CDD\|182761

Protein	Function_ID	Function_description	E-value
NZ_CP016380.1\|WP_016351748.1\|3801243_3801693_+\|type-II-3-dehydroquinate-dehydratase	gnl\|CDD\|235443	PRK05395, PRK05395, type II 3-dehydroquinate dehydratase.	2.54505e-97
NZ_CP016380.1\|WP_016351764.1\|3821634_3822834_+\|sodium/glutamate-symporter	gnl\|CDD\|129314	TIGR00210, Sodium/glutamate_symport_carrier_protein, sodium--glutamate symport carrier (gltS). [Transport and binding proteins, Amino acids, peptides and amines].	1.81318e-176
NZ_CP016380.1\|WP_065479083.1\|3801729_3802185_+\|acetyl-CoA-carboxylase-biotin-carboxyl-carrier-protein	gnl\|CDD\|235777	PRK06302, PRK06302, acetyl-CoA carboxylase biotin carboxyl carrier protein.	1.25571e-77
NZ_CP016380.1\|WP_065479096.1\|3819579_3819873_+\|DUF1315-family-protein	gnl\|CDD\|225681	COG3139, COG3139, Uncharacterized protein conserved in bacteria [Function unknown].	1.48435e-28
NZ_CP016380.1\|WP_043167201.1\|3812317_3814333_-\|NADPH-dependent-2,4-dienoyl-CoA-reductase	gnl\|CDD\|239240	cd02930, DCR_FMN, 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provides a hydrid ion to the C5 atom of substrate, and Tyr and His are proposed to form a catalytic dyad that protonates the C4 atom of the substrate and completes the reaction.	0
NZ_CP016380.1\|WP_011707130.1\|3820112_3821120_-\|asparaginase	gnl\|CDD\|181876	PRK09461, ansA, cytoplasmic asparaginase I; Provisional.	0
NZ_CP016380.1\|WP_016351749.1\|3803653_3803932_+\|YhdT-family-protein	gnl\|CDD\|377626	pfam06196, DUF997, Protein of unknown function (DUF997). Family of predicted bacterial membrane protein with unknown function.	7.74569e-21
NZ_CP016380.1\|WP_065479085.1\|3805477_3806905_+\|PTS-transporter-subunit-EIIC	gnl\|CDD\|273920	TIGR01998, N-acetylglucosamine_and_glucose_PTS, PTS system, N-acetylglucosamine-specific IIBC component. This model represents the combined B and C domains of the PTS transport system enzyme II specific for N-acetylglucosamine transport. Many of the genes in this family also include an A domain as part of the same polypeptide and thus should be given the name "PTS system, N-acetylglucosamine-specific IIABC component". This family is most closely related to the glucose-specific PTS enzymes. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids].	1.46807e-94
NZ_CP016380.1\|WP_011707125.1\|3817110_3817911_-\|DUF2989-domain-containing-protein	gnl\|CDD\|371419	pfam11207, DUF2989, Protein of unknown function (DUF2989). Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.	2.24552e-90
NZ_CP016380.1\|WP_010675412.1\|3809422_3810301_+\|50S-ribosomal-protein-L11-methyltransferase	gnl\|CDD\|283886	pfam06325, PrmA, Ribosomal protein L11 methyltransferase (PrmA). This family consists of several Ribosomal protein L11 methyltransferase (EC:2.1.1.-) sequences.	5.22069e-141
NZ_CP016380.1\|WP_017409325.1\|3823017_3824889_-\|methyl-accepting-chemotaxis-protein	gnl\|CDD\|223910	COG0840, Tar, Methyl-accepting chemotaxis protein [Cell motility and secretion / Signal transduction mechanisms].	9.10854e-70
NZ_CP016380.1\|WP_065016756.1\|3810531_3811095_+\|sugar-O-acetyltransferase	gnl\|CDD\|100047	cd03357, LbH_MAT_GAT, Maltose O-acetyltransferase (MAT) and Galactoside O-acetyltransferase (GAT): MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively at the C6 position of the nonreducing end glucosyl moiety. GAT specifically acetylates galactopyranosides. Furthermore, MAT shows higher affinity toward artificial substrates containing an alkyl or hydrophobic chain as well as a glucosyl unit. Active MAT and GAT are homotrimers, with each subunit consisting of an N-terminal alpha-helical region and a C-terminal left-handed parallel alpha-helix (LbH) subdomain with 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).	1.16365e-92
NZ_CP016380.1\|WP_016351752.1\|3806907_3807780_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|176114	cd08422, PBP2_CrgA_like, The C-terminal substrate binding domain of LysR-type transcriptional regulator CrgA and its related homologs, contains the type 2 periplasmic binding domain. This CD includes the substrate binding domain of LysR-type transcriptional regulator (LTTR) CrgA and its related homologs. The LTTRs are acting as both auto-repressors and activators of target promoters, controlling operons involved in a wide variety of cellular processes such as amino acid biosynthesis, CO2 fixation, antibiotic resistance, degradation of aromatic compounds, nodule formation of nitrogen-fixing bacteria, and synthesis of virulence factors, to name a few. In contrast to the tetrameric form of other LTTRs, CrgA from Neisseria meningitides assembles into an octameric ring, which can bind up to four 63-bp DNA oligonucleotides. Phylogenetic cluster analysis further showed that the CrgA-like regulators form a subclass of the LTTRs that function as octamers. The CrgA is an auto-repressor of its own gene and activates the expression of the mdaB gene which coding for an NADPH-quinone reductase and that its action is increased by MBL (alpha-methylene-gamma-butyrolactone), an inducer of NADPH-quinone oxidoreductase. The structural topology of this substrate-binding domain is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	1.70428e-70
NZ_CP016380.1\|WP_065479088.1\|3807880_3808897_+\|zinc-binding-alcohol-dehydrogenase-family-protein	gnl\|CDD\|176214	cd08252, AL_MDR, Arginate lyase and other MDR family members. This group contains a structure identified as an arginate lyase. Other members are identified quinone reductases, alginate lyases, and other proteins related to the zinc-dependent dehydrogenases/reductases. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction.	0
NZ_CP016380.1\|WP_017409322.1\|3818108_3819539_+\|glyceraldehyde-3-phosphate-dehydrogenase	gnl\|CDD\|236219	PRK08289, PRK08289, glyceraldehyde-3-phosphate dehydrogenase; Reviewed.	0
NZ_CP016380.1\|WP_065479094.1\|3816546_3817104_-\|NUDIX-domain-containing-protein	gnl\|CDD\|240042	cd04686, Nudix_Hydrolase_27, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required.	3.16441e-40
NZ_CP016380.1\|WP_011707113.1\|3802200_3803541_+\|acetyl-CoA-carboxylase-biotin-carboxylase-subunit	gnl\|CDD\|236307	PRK08591, PRK08591, acetyl-CoA carboxylase biotin carboxylase subunit; Validated.	0
NZ_CP016380.1\|WP_049048228.1\|3814643_3816488_+\|signal-peptide-peptidase-SppA	gnl\|CDD\|182860	PRK10949, PRK10949, signal peptide peptidase SppA.	0
NZ_CP016380.1\|WP_017409311.1\|3803921_3805400_+\|sodium/pantothenate-symporter	gnl\|CDD\|236519	PRK09442, panF, sodium/pantothenate symporter.	0
NZ_CP016380.1\|WP_065479091.1\|3811662_3812211_-\|NAD(P)H-nitroreductase	gnl\|CDD\|182761	PRK10828, PRK10828, putative oxidoreductase; Provisional.	9.09696e-88

>NZ_CP016380.1|WP_065016756.1|3810531_3811095_+|sugar-O-acetyltransferase
MTEYDKMIASQPYNCMAPELDLLRRETARLYRRFNRSDEEDEQLALLQQIVGELAQGAFICPPLYCTYGRHIHLGERSYINMGATLLDNAPIRIGAEVMIGPNVQIYTAAHALDADERTQGVETALPVTIEDRVWIGGGAILLPGVTIGREAIVGAGAVVTKDVPAGARVVGNPARVLPAKGKTPVS
>NZ_CP016380.1|WP_010675412.1|3809422_3810301_+|50S-ribosomal-protein-L11-methyltransferase
MPWIQIRINATAKTADKVSNMLLGRGAQAVTFMDAKDVPVYEPMPGETPLWGETEVMGLFDAETDPAPTIAFFQQIFGEDVGYKVEQLEDKDWVREWMDHFHPMQFGERLWICPSWRDVPNPDAVNVMLDPGLAFGTGTHPTTALCLQWLDGLDLAGKTVVDFGCGSGILGIAALKLGAARVIGIDIDPQAIQASRDNAERNGVADQIELYLPADQPQDVEADVVVANILAGPLRELAPLIAGHGKAGSLMALSGVLESQAPELETIYGQWFEMDPTAVKEEWCRLSGRKLG
>NZ_CP016380.1|WP_065479088.1|3807880_3808897_+|zinc-binding-alcohol-dehydrogenase-family-protein
MKAIALTHYLPSDHPHCFIEANLADPTPGPRDLLVRVKATSINPVDTKVRAPKTKVESSPRVLGWDAVGEVIAVGREVTLFKAGDRVWYAGDISRPGSNSALQLVDERISALAPISLSDVEAAALPLTAITAWETLFERMRLTRESSGKLLIIGGAGGVGSIAIQLARQLTGMEVIATASRPETRAWCLQMGAHQVVSHHQLQEELTALGITQVDAIFCTNATEQHWDAMANLISPFGHICTIAESSEPWDLSLLKSKSVSFSQEFMFTRSLFQTPDMIEQHNLLGLVAALVDQDVVKTTLSKVVAELTPTTLAQAHAEVEAGRMVGKLVIDMSRFGN
>NZ_CP016380.1|WP_016351752.1|3806907_3807780_-|LysR-family-transcriptional-regulator
MNNVELELMGLFATVVEQGSFTGAAELLGMPKSSVSQKISRLESQLGVRLLQRTTRRLSLTPQGEVYVEQCRALLALARSANLAMARLRAAPAGRVRITAPEATGTLLLGRILAEFRALYPEVVLELTLCDEQLDLVGEGYDLALRAAPLKDSSLICRRIGQVPRHLVAAPAYLAAHGTPQQLSELGRYACLVHTSLPVWPLQEGGWRPQGACLSNSLLALRELAINEGGIALLPHHVCEGDLAAGRLQKVLPSHPIPANPFYLIYPSREHLAPALRSLMDFVAERLPFA
>NZ_CP016380.1|WP_065479085.1|3805477_3806905_+|PTS-transporter-subunit-EIIC
MSVQNARQILTQALQRLGYALLLPVSILPLAALLYRLGQPDVLDLAVLSLTGRALFSQMPLIYAVAIAFGLSRQGEGTQALAGAVNFLLLSSALGTLAPGLHSDMICGLLAGLTTAIVYPWLKRHPMPHWLRLVNGDFTSLLASALTCLLLAFPLALLWPLLEQGITLLASELLTTPFGAFCYGVLNRLLIPLGLHQVLGSLIGLGESNLQALASAQPLHEGYVAGLYPIIMFGLPGACFAIWLHRQRMQRLPQGGLLLTLALTSALVGITEPIEFLFAFTAPWLFLAHALLTGLSLATCSALGIKVGSYFSAGLLDLVLSYHAGEHSFWLIPVGILFFVTYTLLFYQLLERTPLSLPSKPIAPEHPRLASVAPSDPQMLAIQYLKVLGGMDNLQAMSVCLTRLSLRVRDISLVDQSRLLGLGCLSWIQLNDHQLVLVLGPNASLIEGQIRMLAERQSVPLGLKPNQESAGQSGW
>NZ_CP016380.1|WP_017409311.1|3803921_3805400_+|sodium/pantothenate-symporter
MNLELMLPLIIYLVLVLGVGFWASRHRVGGDFVQEYFIGNRSMGGLVLAMTLVATYTSASSFIGGPGAAYKIGLGWVLLAMIQLPTVWLTLGVLGKKFAIIARRVNAVTINDMLWARYQSKAVVVLGSVTIILAFIATMVVQFIGGARLLETATGLSYQQGLLLFASCVLLYTVIGGFRAVVMTDALQGIIMLIGTGALLAGILVAGDGLPNLIHQLKVIDPKLVSPQGAGDLLTQPFMLSFWVLVCIGVVGLPHSALRCFGYRDSKALHRGILIGTIVSALLMFGMHLAGALGRAILPGMDSPDKIMPSLMMEVLPPWLAGVFLAAPMAAIMSTIDSQLIQASATLVKDLYLNYLSPEKAGQEKLEVRVPRLSLLCTLILGTLVLLAALQPPEMIIWLNLLAFGGLQAVFLWPLVLGLYWSRANGPGALASMVCGILCYAILSQWEIKPAGLHAIVPSLGLGLIAFVLVSLLTPAPSQHVRRLFEPQSSMD
>NZ_CP016380.1|WP_016351749.1|3803653_3803932_+|YhdT-family-protein
MSEAKVNRFALARREAALCLLLTLLYFLAWYGTAYFIPAEIECWDMPLWFLLSCILMPLLFIVLCGLMVDRLFVDIPLDSPPLDAKEPSHES
>NZ_CP016380.1|WP_011707113.1|3802200_3803541_+|acetyl-CoA-carboxylase-biotin-carboxylase-subunit
MLDKVVIANRGEIALRILRACKELGIKTVAVHSTADRELKHVLLADETICIGKPASTDSYLNVPAIIAAAEVTGAVAIHPGYGFLSENADFAEVVEKSGFIFIGPRAETIRLMGDKVSAIEAMKKAGVPCVPGSDGPVDSDAKHNAAIAKRIGYPVIIKAAGGGGGRGMRVVRSEAELSAAIALTKSEAGQFFKNDMVYMEKYLENPRHIEIQVLADGQGNALYLGERDCSMQRRHQKVVEEAPAPGITEEMRKFIGERCVRACIEIGYRGAGTFEFLYENGEFYFIEMNTRIQVEHPVTELVTSVDLIKEQLRIAAGQPLSITQQDIRIRGHAIECRINAEDPATFMPSPGLIQRFHAPGGLGVRWDSHIYAGYKVPPYYDSMIGKLICYGENRDVAIARMRQALDELVVEGIKTNVSLQKEIMKDENFQHGGTNIHYLHKKLGL
>NZ_CP016380.1|WP_065479083.1|3801729_3802185_+|acetyl-CoA-carboxylase-biotin-carboxyl-carrier-protein
MDIRKIKKLIELVEESGIAELEISEGEESVRISRNFSGQVTAAPQMIMQQAAAPVAAPAAAPVAAAPAAEAIPSGHLMRSPMVGSFYRSSSPEAKPFVEVGQHVNVGDTLCIVEAMKMMNQIESDKAGVIKAILVENGQAVEFDEPLFIIE
>NZ_CP016380.1|WP_016351748.1|3801243_3801693_+|type-II-3-dehydroquinate-dehydratase
MSQKHRILLLNGPNLNLLGKREPGIYGSKTLDEIVADLTHNAGELGVTLEHLQSNAEHELVGRIHQAMGQVDFIIINPAAFTHTSVAIRDALLGVAIPFIEVHLSNVHAREPFRHHSYLSDVAKGVICGLGADGYQFALTAAVHQLRAA
>NZ_CP016380.1|WP_065479091.1|3811662_3812211_-|NAD(P)H-nitroreductase
MDALHLLLNRHSCGRLAEPAPSGEVLDNILKAGLRAPDHGTLTPWQFILFEGEGRERLGTLLAQAARSRGEDEESIKKCQEAPLRAPLLIAVATRYQEHPKVPRLEQELSAGCALMAMQMAAQAQGFNGIWRSGWFIFDEQINDGLGLTPEDQLVGFLYLGTPMLEARKLRELPVSEFVRRF
>NZ_CP016380.1|WP_043167201.1|3812317_3814333_-|NADPH-dependent-2,4-dienoyl-CoA-reductase
MSRYPTLLTPLDLGFTQLRNRVLMGSMHTGLEEEKGGFDKLAAFYGERARGGVGLIVTGGIAPNLRGRLVPHGSQLSFPWQVAKHKKVTSAVHQEGGKIALQILHAGRYAYHPFSLAPSALKAPISPFKPRAMSERQIRGTIRDFAATAQLARSAGYDGVEVMGSEGYLINQFICERTNKRTDGWGGSSENRMRFPVEIVRAIRERVGPDFIIIFRLSMLDLVEQGSSLEEVIALGKALEQVGVTLINTGIGWHEARIPTIATSVPRGAFSWVTAELKKHLSVPLITTNRINTPEVAERILAGGEADMVSMARPFLADPEFVIKAAENRADEINTCIACNQACLDHVFKQKRASCLVNPRACFETELTFGRVPQPKKLAVVGAGPAGLAFACYAAERGHQVSLFDQASEIGGQFNFAKQIPGKEEFHETLRYFAKRLEKCGVELYLGQRQSAESLLGGGFDEVILATGIRPRTPNIPGIEHAKVMSYLDVLRDHKPVGEKVAVIGAGGIGFDVAEYLVEGKGDRSRDHWLKEWGIDKQLGERGGLMAPVIDAPERQVWLLQRKESKVGDGLGKTTGWIHRTVLKNRKVEMLSGVQYLRIDDEGLHIQVGEQQQCLPVDQVIICAGQEPLKELQAGLQAAGKPVHIIGGADVAAELDAKRAIRQGAELAAVI
>NZ_CP016380.1|WP_049048228.1|3814643_3816488_+|signal-peptide-peptidase-SppA
MSIFKGLGWLFRSLWRLLNFTRLMLVNLLFLVVVLIIVFSVSQKEAPSAPIEGALTLNLSGVLVEQRSQTDPTVQLLRQVDNSDELPSEIVLSDLLWAIKSAKDDDRIKALVIKPQGLQGTSFSKLQEVASAIDAFKESGKPVIAMADFYTQGQYLLAAHADHVLLNQSGAVVIEGLGVYQTYYKSALEKLNITPHVFKVGTYKSFVEPYTRDEMSPESKEANQRWLDQLWQSYVADVAEQREIEPDAVAPGKDRFLELLRKAGGNAANYALDNGLVDQLATRDEMTQAVIKEVGESDDHGWKGVGLKEYLAAIPSQYPQSGKDEVGLIVASGAIMDGVQPAGTIGGDSLADLLADARRDDKVKALVLRVDSPGGSAFAAEQIRAELLALKQAGKPVVISMGSYAASGGYWISADADKIFASPTTLTGSIGVFGMFATIDKALSQYGVHTDGVGTTDYVGVGLTRALPEHVGQAIQLNVEDTYQRFVGLVSKGRGLSPEETEKAAEGRVWTGQDAKALGLVDEFGDQEAAIKAAAELANLKEWQVTPIEQEESAKDKFLRQLFDSSAQVLASHLQSWLPAGLGKALVEVNRSLDPLTRFNDPQGTYALCPVCTP
>NZ_CP016380.1|WP_065479094.1|3816546_3817104_-|NUDIX-domain-containing-protein
MNHIESLASDWPHPFDIRLTHGRVNTDGRQLERVTVRAVVLRGDQLLLVHSRVNGDLMFPGGGIEQGESHRTALARELREECGAELVAVGALLGETREYRPAREADYDAYCIRSFYYLCQVGEAWCEPQPQPYEIRLGFTPGWFELAEALQTNKTQLAGPCPQWTVRETRVLAELHHWHGAGLLG
>NZ_CP016380.1|WP_011707125.1|3817110_3817911_-|DUF2989-domain-containing-protein
MTPFPARSLLFGLCCGLLLTACDDDRIHNICANYPALCQDLVDDGWCRYERSDIIRARYYLQAEGTQRRQYELMRSLERYLKCAERSTNIEYKRAREQKSPRVEGMLAAGEQLAQLDAATRNATDPYLLLWHWTNNTNELARQQFLALEGQPVLEEPELQLALGGIYAKSEPQKAIALMQHALSLYREGEQVNGRILTSLSTLYMGQKQYGQAYLWGKVSESFQNAAEVSATRFSLYHSLSKQEQESLDSQAATLVEQLKSGTYRP
>NZ_CP016380.1|WP_017409322.1|3818108_3819539_+|glyceraldehyde-3-phosphate-dehydrogenase
MTHEHYLQAWQESQELAEAMQPLIGRLYRQQGIEITLYGRPLQNASTIDILKAHRVVRRHQGAPLPIQQSFPLLQAILALNPTAAEIDLGKLAVGYWQDHQDEAGIDDYLRAKLAPALGRGVPAPTDVVLYGFGRIGRLLARLLIERTGAANSLRLRAIVVRGGRDGDLEKRASLLRRDSVHGPFNGSIEVDVERSAIIANGTFIQVIYANSPADIDYTAYGIHDALIVDNTGVWRDEAGLSEHLKARGAARVLLTAPGKGEMKNVVFGVNHEVIGPDDKIISAASCTTNAITPVLKVMQDKYGIRHGHVETVHSYTNDQNLIDNYHKGERRGRSAALNMVMTSTGAAKAVAKALPELKGKLTGNAIRVPTPNVSLAIINLSLEQTTDRESLNAYLQQMALSSALHRQIDFSASTELVSSDMVGSRFAGIVDSQATIAEGDHCVLYVWYDNEFGYSCQVVRVMEQMAGAVRQDLPA
>NZ_CP016380.1|WP_065479096.1|3819579_3819873_+|DUF1315-family-protein
MSFQQGEFLQAIRQMPSEVYERLKTAVELGKWPDGKPLTDEQKATSLQAVMAWQAMHLDNPEHMNIGRDGEIVMKSKSELKRQYRDEEEIVRVDLNH
>NZ_CP016380.1|WP_011707130.1|3820112_3821120_-|asparaginase
MKKSIYIAYTGGTIGMQRSDHGYVPMAGFMEDCLARMPEFHRPEMPDYHIHEYAPLIDSSDMTPADWQRIAEDIKGNYDKYDGFVILHGTDTMSFTASALSFMLEDLHKPVIITGSQIPLAELRSDGQQNLLNALYIAANYPIHEVTLFFNNQLYRGNRSKKVHADGFHAFDSPNYPPLLNAGIAISLEAGELGVPSERPLVLHDITPQPIGVVTLYPGISAEVIANILQQPVRALILLSFGVGNAPQNPAMLALLSEASARGVIIVNLSQCLHGKVNMGGYATGNALSRAGVISGFDMTAEAALTKLHFLLSQDLPAPRIRELMQQSLRGELTP
>NZ_CP016380.1|WP_016351764.1|3821634_3822834_+|sodium/glutamate-symporter
MLQLDSYATLVAATLVLLLGRLLVTRVGLLRTFNIPKPVAGGLVVALVLLLLRSTLQMELQFDTSLQTPLMLAFFASIGLSADLASLKRGGKAVLTFLLVVTGLLLVQNSLGVGLATLLGLDPHMGLLAGSITLSGGHGTGAAWGATFTEKYGVQSAAELAIACATFGLVLGGLIGGPVARYLVKKVKVPGEEHNRDDAPQGFEMPDMERPLTTFSLIETLALIAISLKGGEMLSAYLKGGAFELPVFVCVLFVGVLLRNVLTLLNWHEVSDREVSLLGNVSLSLFLAMALMSLRLWDLANLALPIFVLLAAQTVAMALYAIFVTFRVMGSNYDAAVLAAGHCGFGLGATPTAIANMQAITQRFGPSHLAFLVVPMVGAFFIDIINAMVIKLFLALPFL
>NZ_CP016380.1|WP_017409325.1|3823017_3824889_-|methyl-accepting-chemotaxis-protein
MKNLSLKQKILLSVVIALSLVILLLSWQSYTSQKSLLLQGSQEQVQRLGSQQAASVSDWLAARRDVIQALGNKAGAEPLNALQQAQVSGRFQLTYFGESGGKMNDSDPSINRDGYDPRSRGWYQEAMSKGGLIVTKPYLDVAYNIMVVTLAQPAQGGVVGGDLSIASLVEDVTKMKLPADGFAIMMHKDGTVIAYKDAAKAMKPATEIDNDLTNALIEQSKTSNSLVPAYFDNEGRDKLLWAVDIPNTDWELVLVLDKETLEAPLSSLLMTQLGLALLVLVGSILAISWLVSMLLGPLSKVSQALARIADGNGDLTQRIKIDTNDEVGQLANSFNRFVGSQHQLIGNIRKLANELNADAERSLVTNQAAVDELQRQQQEVTMVATAVTEMASATMEIAGNAENTAAAAQQSAQSSEQGKMLVNQTRQSINGLAEEVGQATEVIGELSRHAQAISGILSTIQGIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRVLSRRTQDSTQEIQSTIETLQQTTARAVSLMQTSQGLADNSVKDADAAAAALEEITQAVSLISDMAGQIATAAEEQTQVTGEITQNTTAIKDVSDEITAAAMRDLDQAESLKGRATDLNQQVSTFIL

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Crispr_ID: NZ_CP016380_12

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP016380_12

4340098-4340209

Orphan

Consensus_repeat	Method
AGCTCGAGCGAATTGACTGCAGGATCGACCGAAGTCACC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP016380_12

>merge|NZ_CP016380|12|4340098-4340209|CRISPRCasFinder
AGCTCGAGCGAATTGACTGCAGGATCGACCGAAGTCACCCGCCCGCCAGCATCATAAATTCACCATATTGTTCAGCTCGAGCGAATTGACCGCAGGATCGACCGAAGTCACC

>NZ_CP016380|12|11|4340098-4340209|CRISPRCasFinder
AGCTCGAGCGAATTGACTGCAGGATCGACCGAAGTCACC	CGCCCGCCAGCATCATAAATTCACCATATTGTTC
AGCTCGAGCGAATTGACCGCAGGATCGACCGAAGTCACC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP016380.1\|WP_065479786.1\|4333071_4333887_+\|LuxR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197715
NZ_CP016380.1\|WP_017408941.1\|4350107_4351910_+\|aminopeptidase-P-family-protein	unknown	unknown	gnl\|CDD\|238518
NZ_CP016380.1\|WP_011704536.1\|4347607_4349233_+\|phosphoenolpyruvate-carboxykinase-(ATP)	unknown	unknown	gnl\|CDD\|236471
NZ_CP016380.1\|WP_011704535.1\|4349408_4350074_+\|GntR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224715
NZ_CP016380.1\|WP_005308483.1\|4339528_4339960_-\|GspG-family-T2SS-major-pseudopilin-variant-ExeG	unknown	unknown	gnl\|CDD\|130771
NZ_CP016380.1\|WP_024943636.1\|4346573_4347458_+\|Hsp33-family-molecular-chaperone-HslO	unknown	unknown	gnl\|CDD\|234643
NZ_CP016380.1\|WP_011704549.1\|4333947_4334703_-\|GspN-family-type-II-secretion-system-protein-ExeN	unknown	unknown	gnl\|CDD\|376490
NZ_CP016380.1\|WP_081304713.1\|4335252_4336437_-\|GspL-family-type-II-secretion-system-protein-ExeL	unknown	unknown	gnl\|CDD\|273768
NZ_CP016380.1\|WP_065479783.1\|4331633_4332902_-\|tyrosine--tRNA-ligase	unknown	unknown	gnl\|CDD\|235645
NZ_CP016380.1\|WP_081304868.1\|4337759_4338389_-\|GspJ-family-T2SS-minor-pseudopilin-variant-ExeJ	unknown	unknown	gnl\|CDD\|130772
NZ_CP016380.1\|WP_016349333.1\|4346066_4346465_+\|ribosome-associated-heat-shock-protein-Hsp15	unknown	unknown	gnl\|CDD\|182397
NZ_CP016380.1\|WP_065479793.1\|4338813_4339365_-\|GspH-family-T2SS-minor-pseudopilin-variant-ExeH	unknown	unknown	gnl\|CDD\|130769
NZ_CP016380.1\|WP_005308487.1\|4338457_4338817_-\|GspI-family-T2SS-minor-pseudopilin-variant-ExeI	unknown	unknown	gnl\|CDD\|376798
NZ_CP016380.1\|WP_011704539.1\|4345003_4345927_-\|GspC-family-type-II-secretion-system-variant-ExeC	unknown	unknown	gnl\|CDD\|273770
NZ_CP016380.1\|WP_016349344.1\|4334764_4335256_-\|GspM-family-type-II-secretion-system-protein-ExeM	unknown	unknown	gnl\|CDD\|377391
NZ_CP016380.1\|WP_043125501.1\|4336556_4337570_-\|GspK-family-T2SS-minor-pseudopilin-variant-ExeK	unknown	unknown	gnl\|CDD\|377165
NZ_CP016380.1\|WP_065479798.1\|4342948_4344982_-\|GspD-family-T2SS-secretin-variant-ExeD	unknown	unknown	gnl\|CDD\|274175
NZ_CP016380.1\|WP_065479795.1\|4341443_4342949_-\|GspE-family-T2SS-ATPase-variant-ExeE	unknown	unknown	gnl\|CDD\|131585
NZ_CP016380.1\|WP_011704542.1\|4340221_4341442_-\|GspF-family-T2SS-innner-membrane-protein-variant-ExeF	unknown	unknown	gnl\|CDD\|273980
NZ_CP016380.1\|WP_026080215.1\|4352022_4352418_+\|nitrous-oxide-stimulated-promoter-family-protein	unknown	unknown	gnl\|CDD\|371708

Protein	Function_ID	Function_description	E-value
NZ_CP016380.1\|WP_065479786.1\|4333071_4333887_+\|LuxR-family-transcriptional-regulator	gnl\|CDD\|197715	smart00421, HTH_LUXR, helix_turn_helix, Lux Regulon. lux regulon (activates the bioluminescence operon.	1.01775e-17
NZ_CP016380.1\|WP_017408941.1\|4350107_4351910_+\|aminopeptidase-P-family-protein	gnl\|CDD\|238518	cd01085, APP, X-Prolyl Aminopeptidase 2. E.C. 3.4.11.9. Also known as X-Pro aminopeptidase, proline aminopeptidase, aminopeptidase P, and aminoacylproline aminopeptidase. Catalyses release of any N-terminal amino acid, including proline, that is linked with proline, even from a dipeptide or tripeptide.	7.18027e-126
NZ_CP016380.1\|WP_011704536.1\|4347607_4349233_+\|phosphoenolpyruvate-carboxykinase-(ATP)	gnl\|CDD\|236471	PRK09344, PRK09344, phosphoenolpyruvate carboxykinase.	0
NZ_CP016380.1\|WP_011704535.1\|4349408_4350074_+\|GntR-family-transcriptional-regulator	gnl\|CDD\|224715	COG1802, GntR, Transcriptional regulators [Transcription].	3.27252e-46
NZ_CP016380.1\|WP_005308483.1\|4339528_4339960_-\|GspG-family-T2SS-major-pseudopilin-variant-ExeG	gnl\|CDD\|130771	TIGR01710, Type_II_secretion_system_protein_G, type II secretion system protein G. This model represents GspG, protein G of the main terminal branch of the general secretion pathway, also called type II secretion. It transports folded proteins across the bacterial outer membrane and is widely distributed in Gram-negative pathogens. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis].	3.66043e-65
NZ_CP016380.1\|WP_024943636.1\|4346573_4347458_+\|Hsp33-family-molecular-chaperone-HslO	gnl\|CDD\|234643	PRK00114, hslO, Hsp33 family molecular chaperone HslO.	5.17924e-134
NZ_CP016380.1\|WP_011704549.1\|4333947_4334703_-\|GspN-family-type-II-secretion-system-protein-ExeN	gnl\|CDD\|376490	pfam01203, T2SSN, Type II secretion system (T2SS), protein N. Members of the T2SN family are involved in the Type II protein secretion system. The precise function of these proteins is unknown.	6.87382e-54
NZ_CP016380.1\|WP_081304713.1\|4335252_4336437_-\|GspL-family-type-II-secretion-system-protein-ExeL	gnl\|CDD\|273768	TIGR01709, Type_II_secretion_system_protein_L, type II secretion system protein L. This model represents GspL, protein L of the main terminal branch of the general secretion pathway, also called type II secretion. It transports folded proteins across the bacterial outer membrane and is widely distributed in Gram-negative pathogens. [Protein fate, Protein and peptide secretion and trafficking].	9.59625e-87
NZ_CP016380.1\|WP_065479783.1\|4331633_4332902_-\|tyrosine--tRNA-ligase	gnl\|CDD\|235645	PRK05912, PRK05912, tyrosyl-tRNA synthetase; Validated.	0
NZ_CP016380.1\|WP_081304868.1\|4337759_4338389_-\|GspJ-family-T2SS-minor-pseudopilin-variant-ExeJ	gnl\|CDD\|130772	TIGR01711, Type_II_secretion_system_protein_J, type II secretion system protein J. This model represents GspJ, one of two proteins highly conserved at their N-termini and described by pfam02501 but easily separable phylogenetically. The other is GspI. Both GspI and GspJ are proteins of the type II secretion pathway, or main terminal branch of the general secretion pathway. This pathway carries proteins across the outer membrane. Note that proteins of type II secretion are cryptic in E. coli K-12 - present but not yet demonstrated to act on any target.	2.33663e-107
NZ_CP016380.1\|WP_016349333.1\|4346066_4346465_+\|ribosome-associated-heat-shock-protein-Hsp15	gnl\|CDD\|182397	PRK10348, PRK10348, ribosome-associated heat shock protein Hsp15; Provisional.	8.80542e-43
NZ_CP016380.1\|WP_065479793.1\|4338813_4339365_-\|GspH-family-T2SS-minor-pseudopilin-variant-ExeH	gnl\|CDD\|130769	TIGR01708, Type_II_secretion_system_protein_H, type II secretion system protein H. This model represents GspH, protein H of the main terminal branch of the general secretion pathway, also called type II secretion. It transports folded proteins across the bacterial outer membrane and is widely distributed in Gram-negative pathogens. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis].	3.69277e-44
NZ_CP016380.1\|WP_005308487.1\|4338457_4338817_-\|GspI-family-T2SS-minor-pseudopilin-variant-ExeI	gnl\|CDD\|376798	pfam02501, T2SSI, Type II secretion system (T2SS), protein I. The Type II secretion system, also called Secretion-dependent pathway (SDP), is responsible for the transport of proteins across the outer membrane first exported to the periplasm by the Sec or Tat translocon in Gram-negative (diderm) bacteria. As members of the T2SJ family, members of the T2SI family are pseudopilins containing prepilin signal sequences.	6.60372e-28
NZ_CP016380.1\|WP_011704539.1\|4345003_4345927_-\|GspC-family-type-II-secretion-system-variant-ExeC	gnl\|CDD\|273770	TIGR01713, Type_II_secretion_system_protein_C, type II secretion system protein C. This model represents GspC, protein C of the main terminal branch of the general secretion pathway, also called type II secretion. This system transports folded proteins across the bacterial outer membrane and is widely distributed in Gram-negative pathogens. [Protein fate, Protein and peptide secretion and trafficking].	1.73844e-65
NZ_CP016380.1\|WP_016349344.1\|4334764_4335256_-\|GspM-family-type-II-secretion-system-protein-ExeM	gnl\|CDD\|377391	pfam04612, T2SSM, Type II secretion system (T2SS), protein M. This family of membrane proteins consists of Type II secretion system protein M sequences from several Gram-negative (diderm) bacteria. The precise function of these proteins is unknown, though in Vibrio cholerae, the T2SM (EpsM) protein interacts with the T2SL (EpsL) protein, and also forms homodimers.	1.57761e-49
NZ_CP016380.1\|WP_043125501.1\|4336556_4337570_-\|GspK-family-T2SS-minor-pseudopilin-variant-ExeK	gnl\|CDD\|377165	pfam03934, T2SSK, Type II secretion system (T2SS), protein K. Members of this family are involved in the Type II protein secretion system. The T2SK family includes proteins such as ExeK, PulK, OutX and XcpX.	4.791e-103
NZ_CP016380.1\|WP_065479798.1\|4342948_4344982_-\|GspD-family-T2SS-secretin-variant-ExeD	gnl\|CDD\|274175	TIGR02517, Putative_type_II_secretion_system_protein_D, type II secretion system protein D. In Gram-negative bacteria, proteins that have first crossed the inner member by Sec-dependent protein transport can be exported across the outer membrane by type II secretion, also called the main terminal branch of the general secretion pathway. Members of this family are general secretion pathway protein D. In Yersinia enterocolitica, a second member of this family is part of a novel second type II secretion system specifically associated with virulence (See ). This family is closely homologous to the type IV pilus outer membrane secretin PilQ (TIGR02515) and to the type III secretion system pore YscC/HrcC (TIGR02516). [Protein fate, Protein and peptide secretion and trafficking].	0
NZ_CP016380.1\|WP_065479795.1\|4341443_4342949_-\|GspE-family-T2SS-ATPase-variant-ExeE	gnl\|CDD\|131585	TIGR02533, Type_II_secretion_system_protein_E, type II secretion system protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis].	0
NZ_CP016380.1\|WP_011704542.1\|4340221_4341442_-\|GspF-family-T2SS-innner-membrane-protein-variant-ExeF	gnl\|CDD\|273980	TIGR02120, Putative_general_secretion_pathway_protein_F, type II secretion system protein F. This membrane protein is a component of the terminal branch complex of the general secretion pathway (GSP), also known as the"Type II" secretion pathway. The GSP transports proteins (generally virulence-associated cell wall hydrolases) across the outer membrase of the bacterial cell. Transport across the inner membrane is often, but not exclusively handled by the Sec system. This model was constructed from the broader subfamily model, pfam00482 which includes components of pilin complexes (PilC) as well as other related genes. GspF is nearly always gene clustered with other GSP subunits. Some genes from Xylella and Xanthomonas strains score below the trusted cutoff due to excessive divergence from the family such that a sequence from Deinococcus which does not appear to be GspF scores higher. [Protein fate, Protein and peptide secretion and trafficking].	0
NZ_CP016380.1\|WP_026080215.1\|4352022_4352418_+\|nitrous-oxide-stimulated-promoter-family-protein	gnl\|CDD\|371708	pfam11756, YgbA_NO, Nitrous oxide-stimulated promoter. The function of ygaB is not known but it is a promoter that is stimulated by the presence of nitrous oxide. It is regulated by the gene-product of the bacterial nsrR gene.	5.97702e-49

>NZ_CP016380.1|WP_005308483.1|4339528_4339960_-|GspG-family-T2SS-major-pseudopilin-variant-ExeG
MQKRRQSGFTLLEVMVVIVILGILASLVVPNLMGNKEKADQQKAVSDIVALENALDMYKLDNNRYPTTEQGLDALVNKPTAAPEPRSYREGGYIKRLPQDPWGNPYQMLSPGQFGKIDIFSMGLDGEAGTDDDIGNWNLKDFQ
>NZ_CP016380.1|WP_065479793.1|4338813_4339365_-|GspH-family-T2SS-minor-pseudopilin-variant-ExeH
MKHSRQAGFTLLEVLLVAMLMGLVATAVTLSMGGARGDRELDKQARRFMAVLQQAQEYSVMDGRLVGLRLEDNSWQFMQRAAKDRKWQVMSGDKLLDRVELPDNMRLAIELEGFSWRTESDEKYEKGRDEKERTPQVFIFPGGELTPFVLTLTQQDDDLRYVRTVKADEFGRLRLLQDEEEEE
>NZ_CP016380.1|WP_005308487.1|4338457_4338817_-|GspI-family-T2SS-minor-pseudopilin-variant-ExeI
MNARGMTLLEVMVALAVFAIAGLAVMKTASEHLSGLNYLEQKTLATWVVENQLVQQKLEAKWPGDSWVEGDEQMAGQTWYWRYRGVATADSNFKALDMEVRTAPKADSPVAMIRTYISR
>NZ_CP016380.1|WP_081304868.1|4337759_4338389_-|GspJ-family-T2SS-minor-pseudopilin-variant-ExeJ
MIRSRRQAGFTLLEMLVAIAIFAGLSLGAYQVLQGVLTSDEVAKRKEARLSELQLAFSVLERDITQMVPRSGRIDGENNKVLLAASRFGQQSDDWGMAFMRGGWLNPDGMLPRSGLQRVGWRLKDHKLERLSYLYPDPVIGTEPRIQPMLERVTALRLYFYDKGTWKEEWTQRNVLPYGLAVELDLEDYGTIRRQFLIGAGGQRAENGN
>NZ_CP016380.1|WP_043125501.1|4336556_4337570_-|GspK-family-T2SS-minor-pseudopilin-variant-ExeK
MAADRRFSRPGRQGGMALLVVLLILSVMVIIASNMSGRLQLELRRTANLTAGKQAWWYAMSAEALVSKVLAQDFKDDPNVVSLGQNWARQDAVFPVDDGKLTGRVRDLQSCFNLNSLSVPLKDGISGDDLEKQPYPVKVFKALLKQLEVEDYEAVQLTDAIRDWTDKDTVLVSSYGAEDAYYEGLTPPYLTANQWMLGTDELRAVRGVSAKLYARLAPYVCALPNDKLVVNVNTIRPEQSALLVALYLDKVGLDDAKRVLTSRPQKGWKNKKEMTDQMPVQVSNIQGLDAALDVKSSYFEARLIAEVGDTRARLESVFVRGKDNKLVMLRRLNGGAE
>NZ_CP016380.1|WP_081304713.1|4335252_4336437_-|GspL-family-type-II-secretion-system-protein-ExeL
MSESLVIRLGTNAQQPVEWLVWSGGEEEVIASGTLASAHALGELQERAGGRPAVVLVPGSDLIFRRVSLPGKYSRQSAAALPYLLEEQIASDVDELHLVVLGHQGHEVDLMAVDKEKMQTWLGWLEQAGLKSRQLLPDVLALPQASEGWSALQLGKEWLLRQGPCQGIVADEPLLAMLLAAEPAPVTIHSHTPPPAIAVASWQAADPELPMLLLARGALASQANLLQGPYRPQTEYSRYWQQWRKVAVVAGALLVVAFAQRGVQLYQLAEQDKALKAEIRQVYTRIFPGESRIVNVRSQMTQHLQQLGQTPQDGVLMVLTELAPTFAEVPGLKPEVLRFDAARGELRLQVTAPGFAEIERFRELAGKRFDVQQGEVRSTEGKVEGALVLKGKSS
>NZ_CP016380.1|WP_016349344.1|4334764_4335256_-|GspM-family-type-II-secretion-system-protein-ExeM
MMDKLQGWWRGISAREQRLVAVGGSVLLIGFCYWVIWQPIGNRIDERERQVLSQQQTLAWLKEKGEEVLALQGGQGRQLDTSGTLEGVVNRTAFNQKIKIARLQPQGQELQVWIDTVAFDDLLIWLATLADRHGVQVQVIEVARENLAPGLVKVRRLQLSRPQ
>NZ_CP016380.1|WP_011704549.1|4333947_4334703_-|GspN-family-type-II-secretion-system-protein-ExeN
MKQRVLIAVLFLAAYLVFLLAKLPASLVVRYLPLPPLVQLEGVSGTLWSGQVARLQYASESLTQLRWELNGWSLLRFAPEVSLRFGERSGLNGQGVVGWSGAAFGRDITLNVPAPWLLARVPMQLPVPVTVAGQLQLKLDQVAQGNPWCDNLYGNLYWYGADADTPAGKLVLGDPEIKLTCIDSRLVAELKQGSEAVQVQGKLELQANRQYLFQGTLKPGPDLPEQMKQGLPFLGQPDGQGRFPLRYQGRI
>NZ_CP016380.1|WP_065479786.1|4333071_4333887_+|LuxR-family-transcriptional-regulator
MIQTLATEALTRSMTEVVDALHGSAFPAALVRLIQQQVAFDCALLLGVGQRPVYLYDNLHHQRALLFDRYLTRHFSQDPFMQALEQGLGAGVWTLAQVSRGRLDPEYRHHFYQATGWQEEVGLILPVRDGLTLMLFLGRLDKRSSLSRDERARLEALFPLVHSLCRQHWREGAALLAQSPVLPGGSDLKATVEQAIASVGGASLTRRERQVAGLLLQGLDTEAIAAELGIGSGTVKNHRKHLYAKLHLRSRAELFRFFLNHLITAPAATAP
>NZ_CP016380.1|WP_065479783.1|4331633_4332902_-|tyrosine--tRNA-ligase
MINPHLLDELTRRGLVAQNSDPVALASHLATPRTVYCGFDPTAGSLHIGHLVPLLMLRRFQLAGHTPVALVGGATGLIGDPSFKATERNLNSAETVQGWVASLSAQIKALLPASEGLAAPLLVNNADWMGQMSALDFLRDIGKHFSVNAMLARESVRQRLARPDQGISFTEFSYALLQSQDFAVLNQRLGCTLQIGGNDQWGNITSGMDLTRRLHQAQVYGMTLPLITKADGTKFGKTEGGAIWLDPALTSPYAFYQFWLGTADEDVYRFLRYYSFMALAEIEALEAEDAKRQGRKLAQQVLADELTELVHGKGALAAVQRISELLFSGKVARLGESDLAQLAQDGMPGWRIEGETDLVTLLVESGLANSKRIARELLAAGAISLNGEIRRDEPLTAADRLFGRYLLLRRGKKQYRLVTWQG
>NZ_CP016380.1|WP_011704542.1|4340221_4341442_-|GspF-family-T2SS-innner-membrane-protein-variant-ExeF
MAAFEYKALDGKGRNKSGVLEGDSARQVRQLLREQGLTPLEVNETTEKAKREANRFVLFRRGASTAELAMITRQLATLVGAGLTIEEALKAVAEQCEKAHLRSMVATVRSKVVEGYSLADSLAAFPHVFDQLFRSMVAAGEKSGHLEKVLNRLADYTEQRQHMRTKLLQAMIYPIVLTCVAIGVISILLTAVVPKVVAQFEHMGQQLPATTRFLIGTSELMQHYGLWFLLLLLVGGFVWRWWLTDDKRRRHWHQLILRLPVIGRVSRGLNTARFARTLSILNASAVPLLEGMKISGEVLSNDFARMRIGEATERVREGTSLRKSLDETKIFPPMMLHMIASGEQSGELDNMLERAADNQDREFETQVNIALGVFEPMLVVSMAGVVLFIVMSILQPILELNNMVNL
>NZ_CP016380.1|WP_065479795.1|4341443_4342949_-|GspE-family-T2SS-ATPase-variant-ExeE
MAAYQLDGVDMPAALPELPFAFARNFGVILTERQGAPVLLCRLGVTPQTLLEVRRVAGCAFTVEQMDGEAFEELLMAHYQRDSSEARQLMEDLGNEMDFFALAEELPQSEDLLDADDDAPIIRLINAMLSEAIKEEASDIHIETFERALVIRFRIDGVLREILRPHRKLASLLVSRIKVMSRMDIAEKRVPQDGRISLRIGGRAVDVRVSTMPSSYGERVVLRLLDKNNVRLELKQLGMTLANRNIISELIRKPHGIILVTGPTGSGKSTTLYAALSEINSRDRNILTVEDPIEYDLEGVGQTQVNSKVDMTFARGLRAILRQDPDVVMVGEIRDLETAQIAVQASLTGHLVMSTLHTNTAIGAITRMRDMGIEPFLLSSSLLAVLAQRLVRTLCPDCRAPRPITEQERIAMGIELAPDQQVWRPVGCEQCNHTGYRGRTGIHELVVIDEAVREAIHSASGELAIERLIRGHTPSIRRDGIDKVLKGQTSLEEVLRVTRED
>NZ_CP016380.1|WP_065479798.1|4342948_4344982_-|GspD-family-T2SS-secretin-variant-ExeD
MINKGKGWRLATVAAALMMAGSAWATEYSASFKNADIEEFINTVGKNLNKTIIIEPSVRGKINVRSYDLLNEDQYYQFFLSVLDVYGFAVVPMDNGVLKVVRSKDAKTSAIPVVDESNPGSGDEMVTRVVPVRNVSVRELAPLLRQLNDNAGGGNVVHYDPSNVLLITGRAAVVNRLVEVVRRVDKAGDQEVDIVKLKYASAGEMVRLVTNLNKDGNNQGGNTSLLLAPKVVADERTNSVVVSGEPKARARIIQMVHQLDRDLQSQGNTRVFYLKYGKAKDLVEVLKGVSSSIEADKKGGAATTTGGGGASIGGGKLAISADETTNALVITAQPDVMAELEQVVAKLDIRRAQVLVEAIIVEIADGDGLNLGVQWANTNGGGTQFTDTGLPIGSVAIAAKDYKDNGNTDSLSKLAGGFNGMAAGFYKGNWAALVTALSTNTKSDILSTPSIVTMDNKEASFNVGQEVPVQSGSQSSTTSDQVFNTIERKTVGTKLVVTPQINEGDSVLLNIEQEVSSVAQKQATGTADLGPTFDTRTIKNAVLVKSGETVVLGGLMDEQNQEKVSKVPLLGDIPVLGYLFRSTTNTTSKRNLMVFIRPTILRDADIYTSLSSNKYSQFRSEQQEAAAQEGYLTSPKRQVLPQYGQDVTMSPEAQKQIQQMQSAPQTSGGSQPFVGNK
>NZ_CP016380.1|WP_011704539.1|4345003_4345927_-|GspC-family-type-II-secretion-system-variant-ExeC
MPYTIANRFGCQKILINMTLPFRDDLLSSLLARCKTVPLSRFSQPLFWLLLLLLAHQCAGLTWRLLDLGSRPVSQSWQPSVVANQSQGANRLDLSGVSRLALFGKAKQQAQAADVVAADAPKTQLNAQLNGVLASSDPAKSIAIIAHNGLQNSYGIGDLIDGTQAKIRQVFPDRVIIERDGRDETLMLDGEEYGKPLPKPGNQDGKLSSVRNELMGNPGKITDYLNISPVRVDGRMVGYRLNPGSNPELFNQLGLVANDMAVSINGLDLRDNAQAMQAMQQVAGATEMTVTVERQGQLYDVYVGLSE
>NZ_CP016380.1|WP_016349333.1|4346066_4346465_+|ribosome-associated-heat-shock-protein-Hsp15
MPNPAETPALVRLDKWLWAARFYKTRSLARDQIEGGKVHYNGQRSKPGKHVEVGALIRCWQGQDEREVRVLEVSEQRKSAPLAQQLYEETEASLKKRAENSEARRFNSQFAPSPERRPDKQERRQLIKVKQY
>NZ_CP016380.1|WP_024943636.1|4346573_4347458_+|Hsp33-family-molecular-chaperone-HslO
MSNQDLLYRYLFEEYEVRGELVQLDHTYRHVVEAQNYPVQVQKLLGELLVATSLLTATLKFEGSITVQLQGNGPVRLAVINGDNNQQLRGVARYEGELPSDDKLQSLIGEGQLVITITPEQGERYQGIIALDADTLAGCLEHYFAQSEQLATKLWIRTGYHQGEPRAAGILLQELPAQSEDHSDDFEHLTQLTSTIKDEELFGLEAEEILYRLYHQDKVRVFDPQAVEFRCTCSRARCEGALLQIEKEEVMEMVQELGKIDMHCDYCGAQYQFDGIDVETLFSRAPGNDANKLH
>NZ_CP016380.1|WP_011704536.1|4347607_4349233_+|phosphoenolpyruvate-carboxykinase-(ATP)
MTIVAEPTLAKQLGLDQYGIKNSTEILRNPSYDQLFAEETRADLEGFERGVVTELGAVNVNTGIFTGRSPKDKYIVKDATTQNTVWWSDQGKNDNKAISPEVWSHLKSLVTKQLSGKRLFVVDGFCGANPDTRLAVRIITEVAWQAHFVKNMFIRPSDEELKTFKPDFVVMNGAKCTNPNWKEQGLNSENFVAFNLTEKIQLIGGTWYGGEMKKGMFSMMNYFLPLRGIASMHCSANVGQDGDVAIFFGLSGTGKTTLSTDPKRQLIGDDEHGWDDDGVFNFEGGCYAKTIKLSKEAEPDIYNAIRRDALLENVTVAADGTIDFDDGSKTENTRVSYPIYHIENIVKPVSKAGHANKVIFLTADAFGVLPPVSKLTKEQTKYHFLSGFTAKLAGTERGITEPTPTFSSCFGAAFLSLHPTKYGQELVKRMEAAGAEAYLVNTGWNGTGKRISIKDTRAIIDAILDGSIEKAETKVLPIFNLEVPTALHDVNPAILDPRDTYANKAEWDAKAVDLAGRFIKNFERFTDNEEGKRLVAAGPQL
>NZ_CP016380.1|WP_011704535.1|4349408_4350074_+|GntR-family-transcriptional-regulator
MTPPYKTRTQMVMENLRGRILRGEFPAGAPLRQDAIAKELAVSRIPVREALMQLEAQGLVKFEAHRGAVVTMLDAAAIEELFYLRALLEADTLFHAVDLMTEETFARAQAILAQFDQALESGTQIERWAELNHSFHATLYQAAGRPQALELIAQINLSCDRYVRFELLFASDGVDKAEREHAQLLELCRARRKHEAVVLLKQHIEAAGQSIKRILDSGHNH
>NZ_CP016380.1|WP_017408941.1|4350107_4351910_+|aminopeptidase-P-family-protein
MNHFEIIETRVAQVRAELAMMELDAFIVPHDDEHLGEYIPAYAERLDWITGFNGSAGLAIILAQRAALFIDGRYTVQARMQAPAELFEFLHLVEDPHVQWLADQLPSGSRVGFDARLHSLAWYHNAKAVLTERGIELVRVEQNPIDLHWSDRPAPTKNPAILYSEALAGQSSQAKREMLASDLRKRGLDAVLLTQAEPINWLLNLRGRDVERLPVVLGFAVLYANATMDFFVDTDKIDCFAFSQHVGQDVSVYPIDKLGDVLQRIGEDQQKVLADPNTANAWTQLVMEEAGAILVAGQDPTMLPKACKNAVELAGMRAAHLRDGVAVTRFLAWLDRLIASGEFDGVDEGTLADQLEAFRREQEHYVEPSFDTISALGPNAAMCHYRHTNGTPRTFGQDSIYLVDSGAQYLDGTTDITRTIKVGELTDEHKAMFTRVLQGHIALDQARFPRGTAGIQLDVLARQPLWQAGYNYDHGTGHGVGHFLSVHEGPQRIAPKGSLVALQPGMVLSNEPGYYREDAFGIRCENLVVVTEQEQIGELPMLGFERLTYVPFDTRLIDRSLLSPAEFRWINEYHAEVYRRLSPLLEGEDLAWLEQATSLI
>NZ_CP016380.1|WP_026080215.1|4352022_4352418_+|nitrous-oxide-stimulated-promoter-family-protein
MTTHHSHPARPARADKAPVHPRLKREQQTVSAMIRLYCDHHHQDPACRHCQQLQEFAHQRLRRCRYGHGHKPTCANCHIHCYAPAMRKQIQLVMKWSGPRMLWHHPWLALRHLLDSRRKAPKRPGSRPLPP

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_CP016380_6	6.2\|1744102\|41\|NZ_CP016380\|PILER-CR	1744102-1744142	41	NZ_CP016380.1	1743931-1743971	2	0.951

1. spacer 6.2|1744102|41|NZ_CP016380|PILER-CR matches to position: 1743931-1743971, mismatch: 2, identity: 0.951

tttggctgggagagcgaccgtcatttcctgtcttggcgagg	CRISPR spacer
tttggctgggataacgaccgtcatttcctgtcttggcgagg	Protospacer
*********** *.***************************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP016380_2	2.1\|543428\|30\|NZ_CP016380\|CRISPRCasFinder	543428-543457	30	MT639649	Microbacterium phage Burritobowl, complete genome	10047-10076	7	0.767
NZ_CP016380_6	6.1\|1744020\|34\|NZ_CP016380\|PILER-CR	1744020-1744053	34	NZ_CP010024	Paraburkholderia fungorum strain ATCC BAA-463 plasmid pBIL, complete sequence	429616-429649	10	0.706
NZ_CP016380_9	9.1\|2297328\|54\|NZ_CP016380\|CRISPRCasFinder	2297328-2297381	54	MN961670	Pseudomonas putida strain 420352 plasmid p420352-IMP, complete sequence	182313-182366	12	0.778
NZ_CP016380_9	9.1\|2297328\|54\|NZ_CP016380\|CRISPRCasFinder	2297328-2297381	54	NZ_CP010016	Burkholderia thailandensis 34 plasmid unnamed, complete sequence	207352-207405	12	0.778

1. spacer 2.1|543428|30|NZ_CP016380|CRISPRCasFinder matches to MT639649 (Microbacterium phage Burritobowl, complete genome) position: , mismatch: 7, identity: 0.767

cacg-agtcatgcggtgctccctgtcatctg	CRISPR spacer
-gcgtcgtcatgcggcgccccctgtcatcct	Protospacer
 .**  *********.**.**********.

2. spacer 6.1|1744020|34|NZ_CP016380|PILER-CR matches to NZ_CP010024 (Paraburkholderia fungorum strain ATCC BAA-463 plasmid pBIL, complete sequence) position: , mismatch: 10, identity: 0.706

acggccgtcatttcccgccttggtgatgggcacc	CRISPR spacer
gtgcttctcatttgccgccttggtgatcggctcg	Protospacer
..* .. ****** ************* *** *

3. spacer 9.1|2297328|54|NZ_CP016380|CRISPRCasFinder matches to MN961670 (Pseudomonas putida strain 420352 plasmid p420352-IMP, complete sequence) position: , mismatch: 12, identity: 0.778

ccctaccatgtcaaggtagtgctctaaccaactgagctataaacccacatctgt	CRISPR spacer
ccccaccatgtcaaggtggtgctctaaccaactgagctatgtgcctgctgtggg	Protospacer
***.*************.**********************. .**..*  . *

4. spacer 9.1|2297328|54|NZ_CP016380|CRISPRCasFinder matches to NZ_CP010016 (Burkholderia thailandensis 34 plasmid unnamed, complete sequence) position: , mismatch: 12, identity: 0.778

ccctaccatgtcaaggtagtgctctaaccaactgagctataaacccacatctgt	CRISPR spacer
ccccaccatgtcaaggtggtgctctaaccaactgagctacgagcctgaagaagc	Protospacer
***.*************.*********************..*.**.. *   *.

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

677427 : 757595

Aeromonas_virus(66.67%)

tail,integrase,tRNA,head,terminase,capsid,holin,plate,portal,transposase

attL 694366:694420|attR 728153:728207

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_065475544.1\|677427_680052_+\|tRNA	alanine--tRNA ligase	A0A1V0SK38	Klosneuvirus	6.2e-76	37.9
WP_011707428.1\|680068_681316_+	aspartate kinase	NA	NA	NA	NA
WP_005305164.1\|681409_681598_+	carbon storage regulator CsrA	A0A2I7RT00	Vibrio_phage	2.9e-12	66.7
WP_065475546.1\|682839_683667_-	D-alanyl-D-alanine endopeptidase	NA	NA	NA	NA
WP_016352045.1\|683806_684472_-	DedA family protein	NA	NA	NA	NA
WP_024946378.1\|684490_685783_-	HlyC/CorC family transporter	NA	NA	NA	NA
WP_043162791.1\|685969_688822_-\|tRNA	valine--tRNA ligase	A0A1V0SK04	Klosneuvirus	3.1e-137	36.2
WP_065475549.1\|688887_689343_-	DNA polymerase III subunit chi	NA	NA	NA	NA
WP_011707422.1\|689504_691013_-	leucyl aminopeptidase	Q6GYZ8	Mycoplasma_phage	4.4e-50	37.6
WP_065475552.1\|691185_692298_+	LPS export ABC transporter permease LptF	NA	NA	NA	NA
WP_065475555.1\|692439_693510_+	LPS export ABC transporter permease LptG	NA	NA	NA	NA
WP_043127228.1\|693668_694190_-	RDD family protein	NA	NA	NA	NA
694366:694420	attL	NA	NA	NA	NA
WP_065475556.1\|695159_696773_-	hypothetical protein	A5X9J8	Aeromonas_virus	6.0e-263	82.1
WP_065475561.1\|696769_697321_-	hypothetical protein	A5X9J7	Aeromonas_virus	3.2e-67	78.1
WP_065475564.1\|697317_698199_-	hypothetical protein	A5X9J6	Aeromonas_virus	3.5e-124	78.8
WP_065475566.1\|698195_698621_-\|tail	tail fiber assembly protein	A5X9J5	Aeromonas_virus	3.2e-30	49.6
WP_065475570.1\|700935_701538_-\|tail	phage tail protein	A5X9J2	Aeromonas_virus	4.5e-107	92.4
WP_065475573.1\|701530_702718_-\|plate	baseplate J/gp47 family protein	A5X9J1	Aeromonas_virus	3.5e-204	91.7
WP_065475575.1\|702714_703038_-	DUF2590 family protein	A5X9J0	Aeromonas_virus	5.5e-51	93.5
WP_065475578.1\|703034_705092_-\|tail	phage tail tape measure protein	A5X9I9	Aeromonas_virus	1.0e-203	59.2
WP_167335816.1\|705095_705239_-	hypothetical protein	A5X9I8	Aeromonas_virus	4.9e-12	72.3
WP_065475580.1\|705280_705544_-\|tail	putative phage tail assembly chaperone	A5X9I7	Aeromonas_virus	4.0e-23	64.4
WP_065475582.1\|705667_706102_-	hypothetical protein	NA	NA	NA	NA
WP_065475585.1\|706098_706560_-	glycoside hydrolase family 104 protein	G0ZT35	Aeromonas_phage	5.4e-76	86.3
WP_065475587.1\|706546_706873_-\|holin	phage holin, lambda family	A5X9I3	Aeromonas_virus	6.8e-25	62.6
WP_042064911.1\|706896_707106_-	TraR/DksA family transcriptional regulator	A5X9I2	Aeromonas_virus	1.0e-29	88.4
WP_044800823.1\|707116_707572_-	DUF2597 family protein	A5X9I1	Aeromonas_virus	3.4e-70	86.0
WP_065475589.1\|707575_708712_-	DUF2586 family protein	A5X9I0	Aeromonas_virus	1.9e-191	88.1
WP_065475592.1\|708715_709423_-	virion morphogenesis protein	A5X9H9	Aeromonas_virus	4.9e-60	55.9
WP_187172444.1\|709419_709941_-\|tail	phage tail protein	A5X9H8	Aeromonas_virus	1.5e-77	81.9
WP_065475594.1\|709937_710399_-\|head	head completion/stabilization protein	A5X9H7	Aeromonas_virus	3.8e-69	91.5
WP_065475597.1\|710570_711299_-\|terminase	terminase endonuclease subunit	A5X9H6	Aeromonas_virus	1.6e-130	95.0
WP_065475600.1\|711302_712352_-\|capsid	phage major capsid protein, P2 family	A5X9H5	Aeromonas_virus	1.4e-183	92.5
WP_065475602.1\|712362_713232_-\|capsid	GPO family capsid scaffolding protein	A5X9H4	Aeromonas_virus	4.8e-126	77.2
WP_065475606.1\|713407_715222_+\|terminase	terminase	A5X9H3	Aeromonas_virus	0.0e+00	93.5
WP_065475608.1\|715218_716259_+\|portal	phage portal protein	A5X9H1	Aeromonas_virus	6.8e-175	95.2
WP_081304781.1\|716317_716572_+	ogr/Delta-like zinc finger family protein	A5X9H0	Aeromonas_virus	1.1e-33	86.2
WP_065475610.1\|716711_719615_-	replication endonuclease	A5X9G4	Aeromonas_virus	6.2e-117	34.8
WP_065475613.1\|719614_719908_-	hypothetical protein	NA	NA	NA	NA
WP_065475616.1\|719907_720204_-	hypothetical protein	NA	NA	NA	NA
WP_065480456.1\|720905_721187_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_017412429.1\|721195_721381_-	hypothetical protein	NA	NA	NA	NA
WP_065475619.1\|721420_721849_-	hypothetical protein	NA	NA	NA	NA
WP_081304471.1\|721862_722438_-	phage regulatory CII family protein	A5X9F7	Aeromonas_virus	2.5e-38	55.7
WP_065475621.1\|722373_722661_-	hypothetical protein	NA	NA	NA	NA
WP_081304783.1\|722672_722858_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_081304472.1\|722976_723630_+	helix-turn-helix domain-containing protein	A0A1I9KG86	Aeromonas_phage	3.4e-39	42.3
WP_081304473.1\|723703_724837_+	ParB N-terminal domain-containing protein	Q858T2	Yersinia_virus	9.2e-77	50.0
WP_147822834.1\|724873_725857_+	hypothetical protein	NA	NA	NA	NA
WP_065475624.1\|725898_726840_-	DNA (cytosine-5-)-methyltransferase	Q7Y4B5	Escherichia_virus	1.2e-133	69.6
WP_065475626.1\|727030_728080_+\|integrase	tyrosine-type recombinase/integrase	A5X9F3	Aeromonas_virus	1.5e-161	81.4
WP_065475629.1\|728659_730096_+	ammonium transporter	NA	NA	NA	NA
728153:728207	attR	NA	NA	NA	NA
WP_065475631.1\|730432_731785_+	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	A0A2K5B251	Erysipelothrix_phage	9.0e-95	43.1
WP_081304474.1\|731933_732116_+	DUF5363 family protein	NA	NA	NA	NA
WP_011707416.1\|732084_732702_-	type IVa pilus pseudopilin TppF	NA	NA	NA	NA
WP_065475633.1\|732742_733531_+	TatD family hydrolase	NA	NA	NA	NA
WP_011707414.1\|733744_735019_+	NupC/NupG family nucleoside CNT transporter	NA	NA	NA	NA
WP_005305103.1\|735142_735313_+	DUF1427 family protein	R4TMJ4	Halovirus	6.3e-06	60.0
WP_011707413.1\|735704_736478_+	deoxyribose-phosphate aldolase	NA	NA	NA	NA
WP_042064696.1\|736587_737919_+	thymidine phosphorylase	A0A0H3UZD4	Geobacillus_virus	8.9e-79	40.0
WP_065475635.1\|737933_739142_+	phosphopentomutase	NA	NA	NA	NA
WP_011707410.1\|739219_739936_+	purine-nucleoside phosphorylase	NA	NA	NA	NA
WP_065475638.1\|740005_742252_-	PAS domain S-box protein	G3MA91	Bacillus_virus	4.6e-19	32.6
WP_017411238.1\|742305_742914_-\|transposase	transposase	NA	NA	NA	NA
WP_065475642.1\|743034_744045_+	phosphoserine phosphatase SerB	NA	NA	NA	NA
WP_065475646.1\|744094_745000_+	alpha/beta fold hydrolase	NA	NA	NA	NA
WP_045788992.1\|745126_747505_-	PilZ domain-containing protein	NA	NA	NA	NA
WP_011707405.1\|747605_748970_+	DNA repair protein RadA	NA	NA	NA	NA
WP_011707404.1\|749041_749422_-	PilZ domain-containing protein	NA	NA	NA	NA
WP_011707403.1\|749523_750006_-	Rsd/AlgQ family anti-sigma factor	NA	NA	NA	NA
WP_130631666.1\|750103_750289_+	hypothetical protein	NA	NA	NA	NA
WP_005305063.1\|750347_750620_+	DNA-binding protein HU-alpha	A0A249Y2G7	Serratia_phage	3.6e-11	44.2
WP_010636148.1\|750721_751147_+	hypothetical protein	NA	NA	NA	NA
WP_011707400.1\|751222_751372_-	hypothetical protein	NA	NA	NA	NA
WP_065475648.1\|751374_752361_-\|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	NA	NA	NA	NA
WP_081304784.1\|752499_752958_+	zinc uptake transcriptional repressor Zur	NA	NA	NA	NA
WP_017411205.1\|752947_753409_+	chemotaxis protein CheX	NA	NA	NA	NA
WP_045525480.1\|753413_753644_+	hypothetical protein	NA	NA	NA	NA
WP_081304785.1\|753714_755049_-	branched-chain amino acid transport system II carrier protein	NA	NA	NA	NA
WP_011707394.1\|755385_756693_-	branched-chain amino acid transport system II carrier protein	NA	NA	NA	NA
WP_065475656.1\|756884_757595_-\|tRNA	tRNA1(Val) (adenine(37)-N6)-methyltransferase	NA	NA	NA	NA

DBSCAN-SWA_2

1651726 : 1660510

Enterobacteria_phage(42.86%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_081304545.1\|1651726_1652902_+	DegT/DnrJ/EryC1/StrS aminotransferase family protein	A0A2K9L470	Tupanvirus	7.0e-104	49.4
WP_065476736.1\|1652963_1654925_+	polysaccharide biosynthesis protein	A0A2P1ELS8	Moumouvirus	4.1e-16	25.3
WP_065480510.1\|1655175_1656261_+	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	1.3e-96	51.6
WP_065476739.1\|1656260_1657148_+	dTDP-4-dehydrorhamnose reductase	A0A291LA50	Escherichia_phage	1.1e-27	35.7
WP_065476741.1\|1657260_1658148_+	glucose-1-phosphate thymidylyltransferase RfbA	I7I009	Enterobacteria_phage	2.4e-104	63.4
WP_081304546.1\|1658253_1658793_+	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	4.6e-42	48.7
WP_081304547.1\|1658865_1659519_+	hypothetical protein	NA	NA	NA	NA
WP_019706001.1\|1659562_1660510_+\|transposase	IS30-like element ISAs2 family transposase	Q9MBM9	Staphylococcus_prophage	1.4e-41	35.7

DBSCAN-SWA_3

2548205 : 2564656

Hokovirus(12.5%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_065477547.1\|2548205_2552165_-	transporter substrate-binding domain-containing protein	A0A1V0SGX0	Hokovirus	2.9e-32	36.0
WP_005300715.1\|2552219_2552516_-	integration host factor subunit alpha	A0A0H3UZA0	Geobacillus_virus	3.0e-11	35.6
WP_065477549.1\|2552519_2554907_-\|tRNA	phenylalanine--tRNA ligase subunit beta	A0A1L3IZU3	BeAn_58058_virus	6.8e-05	23.6
WP_016350663.1\|2554919_2555903_-\|tRNA	phenylalanine--tRNA ligase subunit alpha	A0A2H4UW22	Bodo_saltans_virus	1.5e-35	44.0
WP_005300683.1\|2556219_2556576_-	50S ribosomal protein L20	NA	NA	NA	NA
WP_005300673.1\|2556591_2556789_-	50S ribosomal protein L35	NA	NA	NA	NA
WP_026080374.1\|2556875_2557424_-	translation initiation factor IF-3	A0A2L0UZ54	Agrobacterium_phage	8.3e-15	37.9
WP_011706169.1\|2557427_2559356_-\|tRNA	threonine--tRNA ligase	A0A2K9L297	Tupanvirus	2.2e-126	37.9
WP_187172457.1\|2559592_2560180_-	SEL1-like repeat protein	NA	NA	NA	NA
WP_065477553.1\|2560354_2561410_+	PA0069 family radical SAM protein	A0A1C9EG97	Acidianus_two-tailed_virus	5.7e-12	29.6
WP_187172458.1\|2561440_2561611_-	hypothetical protein	NA	NA	NA	NA
WP_029300958.1\|2561908_2564656_-	DNA topoisomerase (ATP-hydrolyzing) subunit A	G3M9Z5	Bacillus_virus	1.7e-108	34.9

DBSCAN-SWA_4

2840496 : 2886130

uncultured_Mediterranean_phage(14.29%)

protease,plate,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_017409658.1\|2840496_2841255_-\|tRNA	tRNA-(ms[2]io[6]A)-hydroxylase	NA	NA	NA	NA
WP_011705746.1\|2841439_2842960_-	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	1.4e-88	42.6
WP_011705745.1\|2842981_2843470_-	CvpA family protein	NA	NA	NA	NA
WP_043168399.1\|2843656_2844952_-\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	1.5e-91	49.6
WP_065477836.1\|2845292_2846630_-	replication-associated recombination protein A	G3MBE0	Bacillus_virus	8.1e-80	42.1
WP_011705742.1\|2846782_2847391_-	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA
WP_065477839.1\|2847468_2849991_-	DNA translocase FtsK 4TM domain-containing protein	A0A218M9A2	Mycobacterium_phage	4.7e-89	48.4
WP_005300047.1\|2850192_2850684_-	leucine-responsive transcriptional regulator Lrp	NA	NA	NA	NA
WP_075384527.1\|2850833_2851064_+	alanine dehydrogenase	NA	NA	NA	NA
WP_017409663.1\|2851670_2852621_+	thioredoxin-disulfide reductase	A0A2I2L5E1	Orpheovirus	2.4e-62	44.5
WP_011705738.1\|2852678_2853926_+	response regulator	A0A127AWB9	Bacillus_phage	6.5e-15	32.2
WP_011705737.1\|2854036_2854507_-	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA
WP_065477842.1\|2854526_2855234_+\|tRNA	leucyl/phenylalanyl-tRNA--protein transferase	NA	NA	NA	NA
WP_065477845.1\|2855230_2855947_+	arginyltransferase	NA	NA	NA	NA
WP_005300033.1\|2856016_2856235_+	translation initiation factor IF-1	NA	NA	NA	NA
WP_065477848.1\|2856304_2858557_-\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	1.2e-168	43.7
WP_005300028.1\|2858616_2858934_-\|protease	ATP-dependent Clp protease adapter ClpS	A0A1B1IT64	uncultured_Mediterranean_phage	2.4e-14	49.4
WP_005300025.1\|2859162_2859381_+	cold shock-like protein CspD	A0A2H4N7Y6	Lake_Baikal_phage	1.2e-17	63.2
WP_017411050.1\|2859488_2860352_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	A0A249XZQ2	Enterococcus_phage	2.3e-27	31.2
WP_126882635.1\|2861823_2862312_-	hypothetical protein	NA	NA	NA	NA
WP_017783798.1\|2862478_2863102_-	lytic enzyme	A0A0X8WP64	Ralstonia_phage	5.5e-23	37.8
WP_065477854.1\|2865134_2867183_-	type VI secretion system tip protein VgrG	A0A077K8Q4	Ralstonia_phage	1.1e-32	25.9
WP_017411057.1\|2867193_2867481_-	type VI secretion system PAAR protein	G4KK81	Yersinia_phage	2.3e-08	39.4
WP_065477857.1\|2867738_2869169_-	type VI secretion system ImpA family N-terminal domain-containing protein	NA	NA	NA	NA
WP_065477860.1\|2869215_2872701_-	type VI secretion system membrane subunit TssM	NA	NA	NA	NA
WP_065477863.1\|2872742_2874188_-	type VI secretion system protein TssA	NA	NA	NA	NA
WP_065477866.1\|2874196_2874802_-	type VI secretion system-associated protein TagO	NA	NA	NA	NA
WP_065477869.1\|2874801_2876340_-	sigma-54-dependent transcriptional regulator VasH	NA	NA	NA	NA
WP_065477872.1\|2876342_2878985_-	type VI secretion system ATPase TssH	K4FB40	Cronobacter_phage	2.4e-91	33.4
WP_010634228.1\|2879005_2879785_-	DotU family type IV/VI secretion system protein	NA	NA	NA	NA
WP_029301183.1\|2879807_2881142_-\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA
WP_065477875.1\|2881144_2881660_-	type VI secretion system lipoprotein TssJ	NA	NA	NA	NA
WP_049048591.1\|2881659_2882910_-	type VI secretion system-associated FHA domain protein TagH	NA	NA	NA	NA
WP_065477878.1\|2882966_2883965_-\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA
WP_011705715.1\|2883928_2885695_-\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
WP_065477881.1\|2885698_2886130_-\|plate	type VI secretion system baseplate subunit TssE	NA	NA	NA	NA

DBSCAN-SWA_5

3784079 : 3791588

Staphylococcus_phage(50.0%)

protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_016351731.1\|3784079_3784550_-	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	3.5e-30	48.7
WP_065479061.1\|3784747_3785941_+\|protease	serine protease	I6WTR7	Cotesia_sesamiae_Mombasa_bracovirus	2.5e-08	25.6
WP_065479063.1\|3786022_3787132_-	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	A0A2H4PQS2	Staphylococcus_phage	4.7e-65	39.2
WP_024944275.1\|3787273_3787927_-	riboflavin synthase	A0A2I2L4R9	Orpheovirus	2.1e-20	36.4
WP_065479066.1\|3787981_3789091_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	A0A2H4PQS8	Staphylococcus_phage	1.2e-49	35.5
WP_010675395.1\|3789187_3789637_-	transcriptional regulator NrdR	NA	NA	NA	NA
WP_081304679.1\|3789771_3790251_-	hypothetical protein	NA	NA	NA	NA
WP_011707102.1\|3790334_3791588_-	serine hydroxymethyltransferase	A0A219Y950	Aeromonas_phage	2.3e-100	53.5

DBSCAN-SWA_6

3981931 : 4037992

Aeromonas_virus(23.08%)

integrase,transposase,capsid,tRNA

attL 3997401:3997417|attR 4035782:4035798

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_029302666.1\|3981931_3982897_+\|tRNA	tRNA dihydrouridine synthase DusB	NA	NA	NA	NA
WP_005309538.1\|3982922_3983219_+	DNA-binding transcriptional regulator Fis	NA	NA	NA	NA
WP_065479292.1\|3983301_3983934_-	LysE family translocator	NA	NA	NA	NA
WP_019706001.1\|3987660_3988608_+\|transposase	IS30-like element ISAs2 family transposase	Q9MBM9	Staphylococcus_prophage	1.4e-41	35.7
WP_065479295.1\|3991068_3993936_+	RNA polymerase-associated protein RapA	A0A1B1IUI1	uncultured_Mediterranean_phage	2.2e-21	38.8
WP_065479298.1\|3994050_3994707_+\|tRNA	bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA	NA	NA	NA	NA
WP_065475368.1\|3994811_3995774_+\|transposase	IS1595 family transposase	NA	NA	NA	NA
WP_073348952.1\|3995820_3996009_-	hypothetical protein	NA	NA	NA	NA
WP_039214446.1\|3996067_3997999_-	bifunctional diguanylate cyclase/phosphodiesterase	NA	NA	NA	NA
3997401:3997417	attL	NA	NA	NA	NA
WP_065479301.1\|3998022_3998520_-	molybdopterin-binding oxidoreductase	NA	NA	NA	NA
WP_011704804.1\|3998615_4000250_-	chaperonin GroEL	A0A2I7SAK5	Vibrio_phage	4.9e-188	67.0
WP_005309514.1\|4000291_4000585_-	co-chaperone GroES	A0A221S322	uncultured_virus	8.6e-11	36.8
WP_081304692.1\|4000767_4002168_+	MATE family efflux transporter	NA	NA	NA	NA
WP_162493509.1\|4002191_4002668_-	FxsA family protein	NA	NA	NA	NA
WP_065479308.1\|4003117_4004560_+	aspartate ammonia-lyase	NA	NA	NA	NA
WP_011704800.1\|4004687_4006007_+	anaerobic C4-dicarboxylate transporter	NA	NA	NA	NA
WP_065475368.1\|4006127_4007090_+\|transposase	IS1595 family transposase	NA	NA	NA	NA
WP_016349559.1\|4007247_4008339_+	porin	Q1MVN1	Enterobacteria_phage	2.1e-46	35.2
WP_065479311.1\|4008403_4009597_-	multidrug efflux MFS transporter MdtH	NA	NA	NA	NA
WP_024946193.1\|4009804_4010704_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_065479315.1\|4010755_4012525_-	M4 family metallopeptidase	NA	NA	NA	NA
WP_017410624.1\|4012876_4013431_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_016349554.1\|4013430_4013982_+	ribosomal protein S5-alanine N-acetyltransferase	NA	NA	NA	NA
WP_005309486.1\|4014084_4014330_-	hypothetical protein	NA	NA	NA	NA
WP_065479317.1\|4014639_4015689_-	oxidoreductase	NA	NA	NA	NA
WP_024946189.1\|4015797_4016961_-	multidrug effflux MFS transporter	NA	NA	NA	NA
WP_065479320.1\|4017183_4017780_+	XTP/dITP diphosphatase	A0A0N9ZPX2	Ugandan_cassava_brown_streak_virus	5.8e-14	31.9
WP_065479324.1\|4017914_4019060_+	radical SAM family heme chaperone HemW	NA	NA	NA	NA
WP_017410628.1\|4019176_4019395_-	ribosome alternative rescue factor ArfA	NA	NA	NA	NA
WP_065479329.1\|4019524_4020061_-	dihydrofolate reductase	NA	NA	NA	NA
WP_005309469.1\|4020050_4020488_-	Zn(2+)-responsive transcriptional regulator	NA	NA	NA	NA
WP_065479332.1\|4020899_4022492_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	Q58MG4	Prochlorococcus_phage	2.8e-71	50.3
WP_065479335.1\|4022602_4023892_+	phosphoribosylamine--glycine ligase	NA	NA	NA	NA
WP_011704785.1\|4024156_4024531_+	hypothetical protein	NA	NA	NA	NA
WP_024946183.1\|4024511_4025066_+	cytochrome b/b6 domain-containing protein	NA	NA	NA	NA
WP_065479338.1\|4025340_4027917_+	alpha amylase C-terminal domain-containing protein	NA	NA	NA	NA
WP_065479341.1\|4028843_4030268_+\|integrase	site-specific integrase	A0A0R6PGY7	Moraxella_phage	9.9e-44	30.9
WP_065479344.1\|4030280_4031246_+	hypothetical protein	NA	NA	NA	NA
WP_065479347.1\|4031344_4031575_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_081304693.1\|4031592_4031793_+	ogr/Delta-like zinc finger family protein	A5X9H0	Aeromonas_virus	1.3e-15	67.3
WP_065479349.1\|4031832_4032153_+	ogr/Delta-like zinc finger family protein	A5X9H0	Aeromonas_virus	9.4e-19	57.7
WP_065479352.1\|4032149_4032791_+\|capsid	GPO family capsid scaffolding protein	A5X9H4	Aeromonas_virus	2.0e-28	46.3
WP_065479355.1\|4032804_4033770_+\|capsid	P2 family phage major capsid protein	F1BUM2	Cronobacter_phage	1.8e-36	34.7
WP_065479358.1\|4033774_4034500_+	hypothetical protein	NA	NA	NA	NA
WP_147822878.1\|4034580_4035051_+	host cell division inhibitor Icd-like protein	NA	NA	NA	NA
WP_147822879.1\|4035047_4035299_+	hypothetical protein	NA	NA	NA	NA
WP_081304694.1\|4035295_4037992_+	DUF927 domain-containing protein	A0A1W6JPG0	Morganella_phage	1.5e-104	32.0
4035782:4035798	attR	NA	NA	NA	NA

DBSCAN-SWA_7

4041855 : 4051791

uncultured_Mediterranean_phage(25.0%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_073348937.1\|4041855_4043721_-	RNA polymerase sigma factor RpoD	A0A2I7SAT0	Vibrio_phage	1.1e-34	32.6
WP_065479366.1\|4043934_4045722_-	DNA primase	A0A0K1LMQ9	Caulobacter_phage	4.0e-74	41.1
WP_065479369.1\|4045810_4046254_-	GatB/YqeY domain-containing protein	A0A292GL36	Xanthomonas_phage	2.2e-26	48.6
WP_005309452.1\|4046269_4046485_-	30S ribosomal protein S21	NA	NA	NA	NA
WP_024946180.1\|4046664_4047678_+\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	A0A0R6PI74	Moraxella_phage	9.1e-108	58.3
WP_011704778.1\|4047762_4048746_-	RNA polymerase sigma factor RpoS	F4YCU2	Synechococcus_phage	1.7e-34	34.1
WP_065479372.1\|4048793_4049834_-	peptidoglycan DD-metalloendopeptidase family protein	A0A0A7NU10	Lactobacillus_phage	6.0e-14	41.4
WP_016349540.1\|4049844_4050426_-	DedA family protein	NA	NA	NA	NA
WP_011704775.1\|4050422_4051040_-	protein-L-isoaspartate(D-aspartate) O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	4.0e-34	46.4
WP_017410638.1\|4051044_4051791_-	5'/3'-nucleotidase SurE	A0A1B1ITZ2	uncultured_Mediterranean_phage	7.2e-70	54.1

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP016381

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

59723 : 121930

Escherichia_phage(47.62%)

integrase,plate,tail,transposase

attL 92241:92300|attR 113798:114712

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_065480857.1\|59723_60149_-\|tail	tail fiber assembly protein	A5X9J5	Aeromonas_virus	7.8e-29	49.3
WP_065480863.1\|63274_64246_-	hypothetical protein	Q71TP5	Escherichia_phage	1.1e-12	30.7
WP_065480865.1\|64255_64672_-	hypothetical protein	NA	NA	NA	NA
WP_147822899.1\|64733_65579_-	hypothetical protein	A0A222YWB7	Escherichia_phage	2.2e-46	37.9
WP_065480872.1\|65575_66982_-	hypothetical protein	Q71TP2	Escherichia_phage	7.9e-86	39.9
WP_065480874.1\|66991_67339_-	hypothetical protein	NA	NA	NA	NA
WP_162493518.1\|67342_68497_-	transglycosylase SLT domain-containing protein	A0A0A0P1R1	Enterobacteria_phage	3.9e-06	37.1
WP_065480879.1\|70692_71520_-	hypothetical protein	A0A222YZ63	Escherichia_phage	3.4e-44	38.7
WP_065480882.1\|71529_72018_-	hypothetical protein	A0A222YY05	Escherichia_phage	2.1e-30	43.1
WP_065480885.1\|72027_72585_-	hypothetical protein	Q1MVL0	Enterobacteria_phage	2.2e-23	40.5
WP_065480888.1\|72661_73162_-\|plate	baseplate protein	A0A077SK14	Escherichia_phage	7.0e-45	48.8
WP_065480890.1\|73171_73768_-	hypothetical protein	A0A222YY02	Escherichia_phage	7.1e-36	45.8
WP_147822900.1\|73787_74489_-	hypothetical protein	A0A222YXT7	Escherichia_phage	1.1e-08	35.1
WP_065480895.1\|74498_76091_-	hypothetical protein	Q1MVJ6	Enterobacteria_phage	1.9e-112	44.5
WP_065480898.1\|76097_76439_-	hypothetical protein	NA	NA	NA	NA
WP_147822901.1\|76489_78130_-	hypothetical protein	Q71TM1	Escherichia_phage	7.6e-80	35.0
WP_065480909.1\|78391_79171_-	hypothetical protein	NA	NA	NA	NA
WP_065480912.1\|79164_79665_-	hypothetical protein	M4PQN8	Sulfitobacter_phage	6.2e-33	58.6
WP_147822902.1\|79715_80117_-	hypothetical protein	NA	NA	NA	NA
WP_065480918.1\|80410_81112_-	hypothetical protein	A0A222YWF1	Escherichia_phage	4.2e-11	28.2
WP_065480921.1\|81108_82101_-	hypothetical protein	NA	NA	NA	NA
WP_065480924.1\|82097_82862_-	hypothetical protein	NA	NA	NA	NA
WP_081304887.1\|82858_83167_-	DUF4406 domain-containing protein	H9C0Q9	Aeromonas_phage	4.2e-24	58.2
WP_065480927.1\|83166_83703_-	hypothetical protein	NA	NA	NA	NA
WP_065480929.1\|83699_84917_-	hypothetical protein	A0A222YXT1	Escherichia_phage	7.9e-66	46.0
WP_081304889.1\|84919_85159_-	hypothetical protein	A0A222YYR0	Escherichia_phage	1.4e-14	49.3
WP_147822903.1\|85239_85899_-	hypothetical protein	A0A222YZ79	Escherichia_phage	1.5e-10	26.1
WP_065480936.1\|85989_86703_-	hypothetical protein	Q71TG3	Escherichia_phage	4.5e-29	37.7
WP_147822904.1\|86702_87011_-	hypothetical protein	NA	NA	NA	NA
WP_065480941.1\|87471_88020_-	hypothetical protein	NA	NA	NA	NA
WP_001138073.1\|88186_91159_-\|transposase	Tn3 family transposase	A0A1B0V7H9	Salmonella_phage	0.0e+00	73.1
WP_001162012.1\|91161_91719_-	recombinase family protein	A0A1B0V7I5	Salmonella_phage	5.8e-48	81.3
WP_000845039.1\|92024_93038_-\|integrase	class 1 integron integrase IntI1	A0A1P8DJJ6	Virus_Rctr41k	1.0e-71	45.5
92241:92300	attL	NA	NA	NA	NA
WP_001931474.1\|93243_94110_+	PSE family carbenicillin-hydrolyzing class A beta-lactamase CARB-2	A0A077SL40	Escherichia_phage	4.8e-57	44.1
WP_001261740.1\|94227_95019_+	ANT(3'')-Ia family aminoglycoside nucleotidyltransferase AadA2	NA	NA	NA	NA
WP_042946310.1\|95107_96457_-	group II intron reverse transcriptase/maturase	H7BV81	unidentified_phage	5.2e-10	28.1
WP_001256774.1\|97257_98517_+	CmlA family chloramphenicol efflux MFS transporter	S4TR35	Salmonella_phage	4.8e-26	31.7
WP_000800689.1\|98641_99274_+	type B-2 chloramphenicol O-acetyltransferase CatB11	M1HKK6	Paramecium_bursaria_Chlorella_virus	7.1e-26	43.0
WP_000679427.1\|99463_99811_+	quaternary ammonium compound efflux SMR transporter QacE delta 1	NA	NA	NA	NA
WP_000259031.1\|99804_100644_+	sulfonamide-resistant dihydropteroate synthase Sul1	A0A0B5J4J5	Pandoravirus	5.0e-11	27.2
WP_000050481.1\|101048_102590_+\|transposase	IS91 family transposase	NA	NA	NA	NA
WP_002008781.1\|102855_103356_+	hypothetical protein	A0A1V0SB21	Catovirus	3.3e-10	31.7
WP_000019304.1\|103355_103925_+	trimethoprim-resistant dihydrofolate reductase DfrA19	A0A1V0SD48	Indivirus	3.5e-08	27.2
WP_000845039.1\|104527_105541_-\|integrase	class 1 integron integrase IntI1	A0A1P8DJJ6	Virus_Rctr41k	1.0e-71	45.5
WP_000381802.1\|105686_106220_+	aminoglycoside nucleotidyltransferase ANT(2'')-Ia	NA	NA	NA	NA
WP_000186237.1\|106302_106935_+	type B-3 chloramphenicol O-acetyltransferase CatB3	A0A2R8FE91	Brazilian_cedratvirus	4.1e-26	41.2
WP_000679427.1\|107091_107439_+	quaternary ammonium compound efflux SMR transporter QacE delta 1	NA	NA	NA	NA
WP_000259032.1\|107432_108272_+	sulfonamide-resistant dihydropteroate synthase Sul1	A0A0B5J4J5	Pandoravirus	5.0e-11	27.2
WP_001389365.1\|108446_109211_+\|transposase	IS6-like element IS6100 family transposase	A0A077SL39	Escherichia_phage	4.3e-86	65.7
WP_001067855.1\|109387_110092_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_000052512.1\|110541_112017_+	ABC-F type ribosomal protection protein Msr(E)	A0A1B0RXA0	Streptococcus_phage	2.3e-160	59.0
WP_000155092.1\|112072_112957_+	Mph(E) family macrolide 2'-phosphotransferase	NA	NA	NA	NA
WP_001067855.1\|113040_113745_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_000946487.1\|114696_115548_+	sulfonamide-resistant dihydropteroate synthase Sul1	A0A0B5J4J5	Pandoravirus	5.1e-11	27.2
113798:114712	attR	NA	NA	NA	NA
WP_000376623.1\|115675_116176_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_000287615.1\|116354_117899_+\|transposase	IS3 family transposase	A0A1B1P773	Bacillus_phage	1.0e-38	34.6
WP_000983249.1\|117967_118753_-	ATP-binding protein	A0A2L1IVB6	Escherichia_phage	3.3e-33	35.0
WP_001324342.1\|118739_120263_-\|transposase	IS21-like element IS1326 family transposase	A0A2L1IVA1	Escherichia_phage	1.2e-15	24.2
WP_000287615.1\|120385_121930_+\|transposase	IS3 family transposase	A0A1B1P773	Bacillus_phage	1.0e-38	34.6

DBSCAN-SWA_2

125914 : 143211

uncultured_Caudovirales_phage(20.0%)

integrase,transposase

attL 141943:141962|attR 143328:143347

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_015063453.1\|125914_127609_-	mercury(II) reductase	A0A2K5B2C5	Erysipelothrix_phage	8.8e-39	27.6
WP_000522996.1\|127647_128073_-	organomercurial transporter MerC	NA	NA	NA	NA
WP_000732275.1\|128100_128376_-	mercury resistance system periplasmic binding protein MerP	NA	NA	NA	NA
WP_001294656.1\|128391_128757_-	mercuric ion transporter MerT	NA	NA	NA	NA
WP_001166628.1\|128828_129284_+	Hg(II)-responsive transcriptional regulator	NA	NA	NA	NA
WP_065480943.1\|129280_129676_-	hypothetical protein	NA	NA	NA	NA
WP_065480946.1\|129876_130590_+	hypothetical protein	J7F9E6	Agrobacterium_phage	2.0e-21	37.9
WP_011787830.1\|130483_133564_-\|transposase	Tn3 family transposase	A0A1B0V7H9	Salmonella_phage	8.2e-51	30.6
WP_011918375.1\|133587_133899_-	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
WP_011787805.1\|133898_134159_-	type II toxin-antitoxin system Phd/YefM family antitoxin	NA	NA	NA	NA
WP_011787804.1\|134328_134949_+	recombinase family protein	E5FFF9	Burkholderia_phage	1.1e-26	37.1
WP_011787803.1\|135066_135399_-	TraR/DksA C4-type zinc finger protein	NA	NA	NA	NA
WP_011787802.1\|135489_136344_-	universal stress protein	A0A2H4J154	uncultured_Caudovirales_phage	1.3e-67	48.6
WP_011787801.1\|136378_137869_-	SulP family inorganic anion transporter	A0A2H4J153	uncultured_Caudovirales_phage	8.6e-224	82.2
WP_065480949.1\|138442_138907_+	hypothetical protein	NA	NA	NA	NA
WP_065480951.1\|138903_139839_+	hypothetical protein	M1PAK5	Moumouvirus	8.6e-28	30.4
WP_147822905.1\|139892_140459_+	hypothetical protein	K7R9L4	Vibrio_phage	2.2e-42	43.8
WP_065480957.1\|140455_140638_+	hypothetical protein	NA	NA	NA	NA
WP_065480961.1\|140668_141181_+	hypothetical protein	NA	NA	NA	NA
WP_065480964.1\|141185_141806_+	DUF262 domain-containing protein	A0A0F6WCK7	Sinorhizobium_phage	5.9e-09	32.2
141943:141962	attL	NA	NA	NA	NA
WP_081304888.1\|142086_143211_-\|integrase	tyrosine-type recombinase/integrase	A0A2I7R1N2	Vibrio_phage	7.9e-36	30.8
WP_081304888.1\|142086_143211_-\|integrase	tyrosine-type recombinase/integrase	A0A2I7R1N2	Vibrio_phage	7.9e-36	30.8
143328:143347	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP016380

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP016381

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection