CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP016539	Planococcus plakortidis strain DSM 23997 chromosome, complete genome	4 crisprs	csa3,cas3,DinG,DEDDh,Cas14u_CAS-V	0	0	2	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP016539_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP016539_1

706639-706726

Orphan

Consensus_repeat	Method
TGTCCCTGTGTCAGACACAATTC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP016539_1

>merge|NZ_CP016539|1|706639-706726|CRISPRCasFinder
TGTCCCTGTGTCAGACACAATTCGGAAGGCAGAAACCTTGATGCAGCGATGTTCTCTTGCTGGAATGTCCCTGTGTCAGACACAATTC

>NZ_CP016539|1|1|706639-706726|CRISPRCasFinder
TGTCCCTGTGTCAGACACAATTC	GGAAGGCAGAAACCTTGATGCAGCGATGTTCTCTTGCTGGAA
TGTCCCTGTGTCAGACACAATTC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP016539.2\|WP_068872315.1\|715285_716995_+\|DUF1311-domain-containing-protein	unknown	unknown	gnl\|CDD\|377758
NZ_CP016539.2\|WP_068872308.1\|711577_712321_-\|amino-acid-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224051
NZ_CP016539.2\|WP_068872300.1\|704354_706625_+\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|223256
NZ_CP016539.2\|WP_068872298.1\|701589_702816_+\|DUF819-domain-containing-protein	unknown	unknown	gnl\|CDD\|227792
NZ_CP016539.2\|WP_068872312.1\|713082_713928_-\|transporter-substrate-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|270344
NZ_CP016539.2\|WP_068872287.1\|696347_696800_-\|VOC-family-protein	unknown	unknown	gnl\|CDD\|319941
NZ_CP016539.2\|WP_068872688.1\|702971_704021_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|377599
NZ_CP016539.2\|WP_068872305.1\|707747_708416_+\|type-1-glutamine-amidotransferase-domain-containing-protein	unknown	unknown	gnl\|CDD\|153235
NZ_CP016539.2\|WP_068872306.1\|708759_710253_+\|glycerol-kinase-GlpK	unknown	unknown	gnl\|CDD\|234594
NZ_CP016539.2\|WP_068872302.1\|706834_707650_+\|tryptophan-rich-sensory-protein	unknown	unknown	gnl\|CDD\|320706
NZ_CP016539.2\|WP_068872285.1\|695636_696272_-\|peptidoglycan-binding-protein	unknown	unknown	gnl\|CDD\|225943
NZ_CP016539.2\|WP_068872310.1\|712335_713019_-\|amino-acid-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223836
NZ_CP016539.2\|WP_068872289.1\|696915_698076_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|340882
NZ_CP016539.2\|WP_068872296.1\|700779_701295_+\|putative-metal-dependent-hydrolase	unknown	unknown	gnl\|CDD\|183954
NZ_CP016539.2\|WP_068872313.1\|714391_715039_+\|VWA-domain-containing-protein	unknown	unknown	gnl\|CDD\|238119
NZ_CP016539.2\|WP_084632740.1\|716999_717515_+\|DUF1643-domain-containing-protein	unknown	unknown	gnl\|CDD\|377919
NZ_CP016539.2\|WP_068872290.1\|698148_698667_-\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224228
NZ_CP016539.2\|WP_068872292.1\|698896_699571_+\|serine/threonine-protein-phosphatase	unknown	unknown	gnl\|CDD\|277316
NZ_CP016539.2\|WP_068872294.1\|699749_700571_-\|CPBP-family-intramembrane-metalloprotease	unknown	unknown	gnl\|CDD\|376806
NZ_CP016539.2\|WP_068872307.1\|710520_711507_+\|macro-domain-containing-protein	unknown	unknown	gnl\|CDD\|394878

Protein	Function_ID	Function_description	E-value
NZ_CP016539.2\|WP_068872315.1\|715285_716995_+\|DUF1311-domain-containing-protein	gnl\|CDD\|377758	pfam07007, LprI, Lysozyme inhibitor LprI. This family consists of several bacterial proteins of around 120 residues in length. Members of this family contain four highly conserved cysteine residues. Family members include lipoprotein LprI from Mycobacterium, which binds to and inhibits macrophage lysozyme, which may aid bacterial survival.	4.29346e-08
NZ_CP016539.2\|WP_068872308.1\|711577_712321_-\|amino-acid-ABC-transporter-ATP-binding-protein	gnl\|CDD\|224051	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism].	1.18925e-141
NZ_CP016539.2\|WP_068872300.1\|704354_706625_+\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|223256	COG0178, UvrA, Excinuclease ATPase subunit [DNA replication, recombination, and repair].	0
NZ_CP016539.2\|WP_068872298.1\|701589_702816_+\|DUF819-domain-containing-protein	gnl\|CDD\|227792	COG5505, COG5505, Predicted integral membrane protein [Function unknown].	1.52969e-99
NZ_CP016539.2\|WP_068872312.1\|713082_713928_-\|transporter-substrate-binding-domain-containing-protein	gnl\|CDD\|270344	cd13626, PBP2_Cystine_like, Substrate binding domain of cystine ABC transporters; the type 2 periplasmic binding protein fold. Cystine-binding domain of periplasmic receptor-dependent ATP-binding cassette (ABC) transporters. Cystine is an oxidized dimeric form of cysteine that is required for optimal bacterial growth. In Bacillus subtilis, three ABC transporters, TcyJKLMN (YtmJKLMN), TcyABC (YckKJI), and YxeMNO are involved in uptake of cystine. Also, three uptake systems were identified in Salmonella enterica serovar Typhimurium, while in Escherichia coli, two transport systems seem to be involved in cystine uptake. Moreover, L-cystine limitation was shown to prevent virulence of Neisseria gonorrhoeae; thus, its L-cystine solute receptor (Ngo0372) may be suited as target for an antimicrobial vaccine. The cystine receptor belongs to the type 2 periplasmic binding fold protein superfamily (PBP2). The PBP2 proteins are typically comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two receptor cytoplasmically-located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	5.80348e-69
NZ_CP016539.2\|WP_068872287.1\|696347_696800_-\|VOC-family-protein	gnl\|CDD\|319941	cd08353, VOC_like, uncharacterized subfamily of vicinal oxygen chelate (VOC) family. The vicinal oxygen chelate (VOC) superfamily is composed of structurally related proteins with paired beta.alpha.beta.beta.beta motifs that provide a metal coordination environment with two or three open or readily accessible coordination sites to promote direct electrophilic participation of the metal ion in catalysis. VOC domain is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.	7.70002e-86
NZ_CP016539.2\|WP_068872688.1\|702971_704021_-\|hypothetical-protein	gnl\|CDD\|377599	pfam06081, ArAE_1, Aromatic acid exporter family member 1. This family consists of bacterial proteins with three transmembrane regions that are purported to be aromatic acid exporters.	5.97201e-44
NZ_CP016539.2\|WP_068872305.1\|707747_708416_+\|type-1-glutamine-amidotransferase-domain-containing-protein	gnl\|CDD\|153235	cd03141, GATase1_Hsp31_like, Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Escherichia coli Hsp31 protein. Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Escherichia coli Hsp31 protein (EcHsp31). This group includes EcHsp31 and Saccharomyces cerevisiae Ydr533c protein. EcHsp31 has chaperone activity. Ydr533c is upregulated in response to various stress conditions along with the heat shock family. EcHsp31 coordinates a metal ion using a 2-His-1-carboxylate motif present in various ions that use iron as a cofactor such as Carboxypeptidase A. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1 domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For EcHsp31, this Cys together with a different His and, an Asp (rather than a Glu) residue form a different catalytic triad from the typical GATase1 domain. For Ydr533c a catalytic triad forms from the conserved Cys together with a different His and Glu from that of the typical GATase1domain. Ydr533c protein and EcHsp31 are homodimers.	8.10324e-71
NZ_CP016539.2\|WP_068872306.1\|708759_710253_+\|glycerol-kinase-GlpK	gnl\|CDD\|234594	PRK00047, glpK, glycerol kinase GlpK.	0
NZ_CP016539.2\|WP_068872302.1\|706834_707650_+\|tryptophan-rich-sensory-protein	gnl\|CDD\|320706	cd15904, TSPO_MBR, Translocator protein (TSPO)/peripheral-type benzodiazepine receptor (MBR) family. This family contains tryptophan-rich translocator protein (TSPO), an integral membrane protein that is highly conserved from bacteria to mammals. In eukaryotes, it is mainly found in the outer mitochondrial membranes of steroid-synthesizing cells of the nervous system where it transports cholesterol into mitochondria. It is known to be highly expressed in metastatic cancer, steriodogenic tissues, as well as inflammatory and neurological diseases such as Alzheimer's and Parkinson's. TSPO is also known as the peripheral benzodiazepine receptor (MBR) and its ligands include benzodiazepine drugs, implicated in regulating apoptosis. In human, a single polymorphism A147T is associated with psychiatric disorders; the mutation causes structural changes in a region implicated in cholesterol binding. TSPO is homologous to bacterial tryptophan-rich sensory proteins, and their tryptophan residues are believed to be functionally important. In bacteria, TSPO acts as a negative regulator of expression of specific photosynthesis genes in response to oxygen/light; it catalyzes a photooxidative degradation of Proto porphyrine (PpIX). R. sphaeroides TSPO (RsTSPO) is involved in porphyrin transport, similar to human, while Arabidopsis translocator protein (AtTSPO) is regulated at multiple levels in response to salt stress and perturbations in tetrapyrrole metabolism.	1.09374e-05
NZ_CP016539.2\|WP_068872285.1\|695636_696272_-\|peptidoglycan-binding-protein	gnl\|CDD\|225943	COG3409, COG3409, Putative peptidoglycan-binding domain-containing protein [Cell envelope biogenesis, outer membrane].	9.63515e-20
NZ_CP016539.2\|WP_068872310.1\|712335_713019_-\|amino-acid-ABC-transporter-permease	gnl\|CDD\|223836	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism].	2.2349e-77
NZ_CP016539.2\|WP_068872289.1\|696915_698076_-\|MFS-transporter	gnl\|CDD\|340882	cd17324, MFS_NepI_like, Purine ribonucleoside efflux pump NepI and similar transporters of the Major Facilitator Superfamily. This family is composed of purine efflux pumps such as Escherichia coli NepI and Bacillus subtilis PbuE, sugar efflux transporters such as Corynebacterium glutamicum arabinose efflux permease, multidrug resistance (MDR) transporters such as Streptomyces lividans chloramphenicol resistance protein (CmlR), and similar proteins. NepI and PbuE are involved in the efflux of purine ribonucleosides such as guanosine, adenosine and inosine, as well as purine bases like guanine, adenine, and hypoxanthine, and purine base analogs. They play a role in the maintenance of cellular purine base pools, as well as in protecting the cells and conferring resistance against toxic purine base analogs such as 6-mercaptopurine. MDR transporters are drug/H+ antiporters (DHA) that mediate the efflux of a variety of drugs and toxic compounds, and confer resistance to these compounds. The NepI-like family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	7.74268e-23
NZ_CP016539.2\|WP_068872296.1\|700779_701295_+\|putative-metal-dependent-hydrolase	gnl\|CDD\|183954	PRK13291, PRK13291, putative metal-dependent hydrolase.	3.77673e-79
NZ_CP016539.2\|WP_068872313.1\|714391_715039_+\|VWA-domain-containing-protein	gnl\|CDD\|238119	cd00198, vWFA, Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A domains.	3.47119e-06
NZ_CP016539.2\|WP_084632740.1\|716999_717515_+\|DUF1643-domain-containing-protein	gnl\|CDD\|377919	pfam07799, DUF1643, Protein of unknown function (DUF1643). The members of this family are all sequences found within hypothetical proteins expressed by various bacterial species. The region concerned is approximately 150 residues long.	6.0801e-59
NZ_CP016539.2\|WP_068872290.1\|698148_698667_-\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	1.28739e-14
NZ_CP016539.2\|WP_068872292.1\|698896_699571_+\|serine/threonine-protein-phosphatase	gnl\|CDD\|277316	cd00144, MPP_PPP_family, phosphoprotein phosphatases of the metallophosphatase superfamily, metallophosphatase domain. The PPP (phosphoprotein phosphatase) family is one of two known protein phosphatase families specific for serine and threonine. This family includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.	6.55787e-29
NZ_CP016539.2\|WP_068872294.1\|699749_700571_-\|CPBP-family-intramembrane-metalloprotease	gnl\|CDD\|376806	pfam02517, Abi, CAAX protease self-immunity. Members of this family are probably proteases (after a isoprenyl group is attached to the Cys residue in the C-terminal CAAX motif of a protein to attach it to the membrane, the AAX tripeptide being removed by one of the CAAX prenyl proteases). The family contains the CAAX prenyl protease. The proteins contain a highly conserved Glu-Glu motif at the amino end of the alignment. The alignment also contains two histidine residues that may be involved in zinc binding. While they are involved in membrane anchoring of proteins in eukaryotes, little is known about their function in prokaryotes. In some known bacteriocin loci, Abi genes have been found downstream of bacteriocin structural genes where they are probably involved in self-immunity. Investigation of the bacteriocin-like loci in the Gram positive bacteria locus from Lactobacillus sakei 23K confirmed that the bacteriocin-like genes (sak23Kalphabeta) exhibited antimicrobial activity when expressed in a heterologous host and that the associated Abi gene (sak23Ki) conferred immunity against the cognate bacteriocin. Interestingly, the immunity genes from three similar systems conferred a high degree of cross-immunity against each other's bacteriocins, suggesting the recognition of a common receptor. Site-directed mutagenesis demonstrated that the conserved motifs constituting the putative proteolytic active site of the Abi proteins are essential for the immunity function of Sak23Ki - thus a new concept in self-immunity.	2.09086e-14
NZ_CP016539.2\|WP_068872307.1\|710520_711507_+\|macro-domain-containing-protein	gnl\|CDD\|394878	cd02908, Macro_OAADPr_deacetylase, macrodomain, O-acetyl-ADP-ribose (OAADPr) family. Macrodomains are found in a variety of proteins with diverse cellular functions, as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Macrodomains can recognize ADP-ribose (ADPr) in both its free and protein-linked forms, in related ligands, such as O-acyl-ADP-ribose (OAADPr), and even in ligands unrelated to ADPr. This family includes eukaryotic macrodomain proteins such as human MacroD1 and MacroD2, and bacterial proteins such as Escherichia coli YmdB; these have been shown to be O-acetyl-ADP-ribose (OAADPr) deacetylases that efficiently catalyze the hydrolysis of OAADPr to produce ADP-ribose and free acetate. OAADPr is a sirtuin reaction product generated from the NAD+-dependent protein deacetylation reactions and has been implicated as a signaling molecule. By acting on mono-ADP-ribosylated substrates, OAADPr deacteylases may reverse cellular ADP-ribosylation.	6.55787e-76

>NZ_CP016539.2|WP_068872300.1|704354_706625_+|ATP-binding-cassette-domain-containing-protein
MPEKRDEIILRGLRENNLKNIDLNIPKEKINVFTGLSGSGKSSVVFDTLATESRRQMTLNYPLYIRHQMPRYERPHADLMQHLSPVVVVEQKPVRGNSRSTVGTYMDIDPLIRLLFSRIGSPPIGSATEFSSESSFGNCPECNGFGEVVTPDIHKLIDHTKSIRESAVRFKPLAPPGWQGRWIRDGGLFDPDLPIKDYPEEKYNLLVYGPPEGERAFSTYYYKEGNRDIEWDGLLPRFIRLYINRDLTKLKVVSQEDVLALTTRTPCPVCEGSGLNPRVLECKINGLNIAHYARLELTELLGELDKIDDPIGKSIAQQAHPSVKQLVGLGLGYLSLSRKMGTLSGGEAQRVKIARHLGSSLNNITYIFDEPSAGLHPEEINMLTHMLASLRDNYNTVVVIEHNLAVIKTADEIIEMGPGAGRSGGEVVYQGGQEGLKKASAITDLDHTVTVNEQPRTAENTFSIKNASDNNLKNISVEIPQNALVSVCGVSGSGKSSLMFGAFTGNYPETIAVGQSSIGTSSRSTLATYMGIMSDIRSILAKQTGQPAGLFSFNSLGACPVCEGKGITTPNVAFADPVTVTCEACKGTRYSDEALSYRYKGKNIVEILELTIDETNEYLEMPKIVKKVDTLKDVGLGYLTLGQTTGSLSGGEVQRLKLASHLKKEGQIYLLDEPSLGLHTQDTSHLLDVFQRLVDKGNSVIVIEHNLDLIAASDWVIEMGPEGGKKGGEVLFEGTPQEMLEADTLTAKWLRKGVEG
>NZ_CP016539.2|WP_068872688.1|702971_704021_-|hypothetical-protein
MRSLRFNGSRIVKTGLAIFLTATICVWFNWPPVFAVITAIVTVEPTVSDSIKKGLVRFPASAIGSAFAVLFITLFGNSPITYTLAAVATILVCYRLKLHAGLLVATLTSVAMVEVIHDHFLFSFFIRLGTTTIGLVVSTAVNMLVFPPNYSTDILKSIHSISGRAGSMLEHTFRTILYEGDDNLQEDKKVVKQLTTEIRKTEKLVHYQRDEASLYPWVRNREAELQMAERQLLFLDNFEYHLNALLRVSFEEIKWTKEERDLIMQAVTALADDLRHSINFDHKKHQDQLKSITDLFWENSKRVPANDAPNTSLFPPEFAILYELITIYDLVDKFFDPNSVKAVQEAIKS
>NZ_CP016539.2|WP_068872298.1|701589_702816_+|DUF819-domain-containing-protein
MENSLIQADDLLTLWGIIVIVAAMSIVLEQKYSWAGKISGAVIALVSAIILSNTGIIPTASPAYDAVWAFIVPLAIPLLLFHVNFKKIWKESGRMLLIFLISSIGTVAGTILSFFLLKDTIPFLDRIGGMMGASYVGGGVNFAAMTAKFDAPEDLVSATVVADNLMMALVFITLMAIPTFGFFRKLYPHPHVLQVEREAESNGGKTNAENFWKRQDISLKDMAMSLGTAFFLVVVATKIAEFFAGIIPSGEEVAFGWNLLSGLIGDQYLVLTTLTFLALALFPRYFDGINGSQEIGTFLIYLFFVVIGIPASIPLIVQNAPLLLVFVAVIVIVNLTVSLTAGKLLKYDLEEILLVVNANVGGPTTAAAMAIAKGWRELIGPILVVGTIGYVIGNYIGTTLGLWFATMM
>NZ_CP016539.2|WP_068872296.1|700779_701295_+|putative-metal-dependent-hydrolase
MDVKFPIGQLQVPEQVTAEDVDKWLGEINSYTTRLREVVDSLDDEDLNKTYREGSWTVRQLVHHIADSQVAMYQRLKLALTEYNPVVKGFDQEKWAYLPDNRLPVESSIRLLEGLNERIVALGNYVTGTQLERVFTHETDGEIRVAENLAKLSWHEEHHLAHIRIALGLEL
>NZ_CP016539.2|WP_068872294.1|699749_700571_-|CPBP-family-intramembrane-metalloprotease
MFVEKKPRFVLGLMTVAAIVSVSLILQAAGNPFLNSIFMLLLFYTVLPGWICSYYFRKRGVKIRQVLFFRGIARWLLPILGISMLVMVFSTSIYWLLLRALMATAPALVDLLLSPQPLPDVWWYLAATGFIIAIIAPIAEEFVFRGVILNQMAELFGLWKGIGFTSLIFAIFHLNFLGAFVFALIAALLYVKTGNLLAPILLHSANNALAVYQAFAGASFMDWLAVTGVSELYTKAAPNLLALMISTALLLLVIGWLSRGLATAAQASDRPNS
>NZ_CP016539.2|WP_068872292.1|698896_699571_+|serine/threonine-protein-phosphatase
MKRILAISDIHGELELFNRLLEKVGYDATEDQLVLLGDYVDRGPDSKGVLERVIELKKQGAIVLRGNHDQMMLDAAKGETGAAGNWLRNGAISTLQSYDASIKDMKLLAGELFWEHVEFLKGTEFYYETDGYIFVHAGVQPGVPVQETDPYVLMWIRDEFHEGYMGDKKIVFGHTPAFKLRGSRDTSIYFGDNRIIGIDGGAFYGGRLNCLELPGEKIHFVEKE
>NZ_CP016539.2|WP_068872290.1|698148_698667_-|TetR/AcrR-family-transcriptional-regulator
MSTKKEDLLTAAEQLFYEHGFHAIGLKAIVQEAGVALMTLYNHFTSKDDLILEVLNRRSQVYMDYLEQGKQQGTGSVAERLAAGHLNWLKQTASNGCMFLRAKEEFMSVPDHPIVQLVTSHKEDTKRLFLSNGLTPAEATRLSLLFEGAVSLAEISPMDEVEDALMALVQKI
>NZ_CP016539.2|WP_068872289.1|696915_698076_-|MFS-transporter
MWKIVLPGIAMIGVTYAFARYSFGLFLPEISSALNLSESQSGLIGSVAYAAYTIALVTAAIFIHKMSARHVVLYLGASAFIGMLGMAASQGFYTLAISAFVAGLGSGWISPAFSQVVAQSLESQERDRGNTWINTGTSVGVVASGPVALAFAEQWRWGYVLFAILAFLTLWWNARAIERTKEKPKEAGEAQFKLGMLGQVRFMILAAIGIGFSSSIYWTFSRSYLTEAQDFSTGGSMVFWIIMGAAGIIGRIAGTIIQRLGLGWSYRLGVLVATASLVTLTIQHPAAIYLSAVLFGISFIFMTGLFIVWGTRHFPDIPSVGVSLSFFSLGIGQSIGSVAAGVLIDGLSYPIAFLSFAAIGLLFVFIKTNAQPVATQSNAAQPGKSV
>NZ_CP016539.2|WP_068872287.1|696347_696800_-|VOC-family-protein
MQNNQLLRMDNVGIVVESLDNTISFFEEIGLELEGRGMVEGDWAGRVTGLGDQQAEIAMMATPDGHSRIELSRFLKPAVTSDHRTAPVNALGYLRVMFAVKDIDGMVARLMKHGAKLAGEVVQYENAYRLCYIRGPEGILIGLAEPLENQ
>NZ_CP016539.2|WP_068872285.1|695636_696272_-|peptidoglycan-binding-protein
MKKVWLPLLLASGLFAALPLSFDSAAAASHGSATDGQLPENLENLMVIAPEHQFTLRQGSKRIEVELLQWTLNDYGLKTEVDGIFEAETDRNVRQYQQEKGLVVDGIVGMYTWVAIYAEHQQPTDGTELPTRLKNLMAIAPEHQFTLRQGSKRIEVELLQWTLNDYGLKTSVDGIFGPETNRNVRQYQADKGLKVDGIVGVRTWTALYGKY
>NZ_CP016539.2|WP_068872302.1|706834_707650_+|tryptophan-rich-sensory-protein
MDEGTVKKTQLLTILNLVAYFATLGVNYLGSSGFFNGNTQKDISDKYMTLISPAPFTFSIWGVIYTLVLVTLVYLFIKRKDEKASRLVLLISPLFLASSLFNMGWIVAFSYEALGISTLLILGLLFSLLFIVERIYKHRSELPSTLAGLAFTLYGAWVFIATIVNISLWLVQLEWDGFGISDSVWTLIVLGLAIAFVLSYLSRFKNAAFPIPLAWAFFGIYSSYANGRLDPEMASVIQGVLIAGIALFLSAAIWRFIKNGNALFLKQTAQE
>NZ_CP016539.2|WP_068872305.1|707747_708416_+|type-1-glutamine-amidotransferase-domain-containing-protein
MAKVLAVLSSGHKDTENNYETGWWAEELFAPMEVLENAGHQVELASPKGGKPTLDEVSLSEEYDPEGKYKKMYESGRADNTMKLSDVNPEEYDAIFIVGGHGAMYDLAEDETLHGIINSVYDKGNIVSAVCHGPAPLIWTKRPDGQSIIAGLDVTGYPQAVEPEGLPEILPFSLEGKMSEVANYTADEKVVWGNEQLLTGRDPFASEALAEELVKALDQKNK
>NZ_CP016539.2|WP_068872306.1|708759_710253_+|glycerol-kinase-GlpK
MSKKYIMSIDQGTTSSRAVLFNHKGEIVETAQQEFEQFFPKPGWVEHDANEIWTSVLACMAGVLRKADVEPSQIAGIGITNQRETAVVWDRNTGKPIYKAIVWQSRQTADICGELKAQGHEELFRKKTGLLIDAYFSGTKVKWILDNVEGAREKADKGDLMFGTIDTWLVYKLSGGAAHVTDYSNASRTLMYNIYDLAWDEELLDILDVPKSMLPEVRQSSEVYANTVDYHFFGYKVPIAGIAGDQQAALFGQACFEKGMAKNTYGTGCFMLMNTGEEGVVSEHGLLTTLAWGIDGKVEYALEGSIFVAGSAIQWLRDGLKILDNAPESERYATSVDSTDGVYMVPAFVGLGTPYWDTDARGAVFGLTRGTTKAHFIRATLESLAYQTKDVVDVMIEDAGIELKTLRVDGGAVSNDFLMQFQSDILDVPVERPVVQETTALGAAYLAGLAVGFWKSKEEIAQQWQIDKTFTSDMSAEQSEKLYDGWKQAVAAARKFK
>NZ_CP016539.2|WP_068872307.1|710520_711507_+|macro-domain-containing-protein
MPLQIVRNDITKMTTDAIVNAANSSLKMGGGVCGAIFRAAGPKQLQEACDRIEYCAVGEAVHTDGFALDAKFVIHTVGPVWEGGGHNEETLLRNCYRNSLELAAELGCESIAFPLISTGIFGYPKEPALRVATEEIDTFLNLRDMDVYLVVLDKQSFGISQKLYESIETFINEQEAEVLEERAVRYRDRHPLESPMYEPKEILEQELSLEEFLEEVDESFSQRLFRFIDDRGMTDAETYKKANLDKKLFSKIRNSPGYTPKKKTILAFAIALELDLDETEELLGTAGYRLSNSHKFDLIVRYFIEREQYNIFEINEALFAFDEALLGS
>NZ_CP016539.2|WP_068872308.1|711577_712321_-|amino-acid-ABC-transporter-ATP-binding-protein
MIKVDQLSKNFNDNEVLKSISLEIEKGEVLSIIGPSGSGKTTLLRCLNLLESPTSGSLKIKDVVVTFNGKTPSKKQKVDIQQYSGMVFQHFHLFPHKTVIENIIEAPLIVQKRDKQEVVAEAEELLKKVGLSAHKNHYPEQLSGGQKQRAAIARILALKPDVLLFDEPTSALDPELVGEVLTVIKDLAQEGQTMIIVTHEMHFAREVSDRVVFIADGYIVEEGKPEVLFSSPQEERTKKFLEKVLVR
>NZ_CP016539.2|WP_068872310.1|712335_713019_-|amino-acid-ABC-transporter-permease
MSDFKWEYLFNIEVAIEALPFILEGAWYTLLIAIVSMLLALFLGLFVALARMNKLTLLSFPARLFISFMRGTPLLVILFILYFGFPMIGIDMQPLTAAIIGISIHFSAYTAEVIRSAISSVAKGQWEAAETLRMTYWQTMRRIILPQGTRIALPPLSSIFMDIIKGTSLAMVITVSEMFYRAKVVVGQTYESLTLYILVALIYWAICSVVTVLQDYLEKKANRYVVT
>NZ_CP016539.2|WP_068872312.1|713082_713928_-|transporter-substrate-binding-domain-containing-protein
MKKPKKFLLFTLISTTALIAAACGNEESNSSASASESGEQNSWEQIEDSGKLVVGTEGLYFPVTYFDETTKELTGFDVEVVRAIGDKLGLEVEFKTMEFDGLLPALRNGQIDVAANDFSITEERLEKFDFTVPVKHSYGSAIVRESDDSGINTVDDLAGKKVGGAATSNYSDYAKEQGAEVVVYTGSDTVLPEIVQGRVDATLNDYLVLIQALEQFDKPGLKLAENVKFSPNSSGLVMQKDSPELKEQLDAALTELIEDGTVTEISLEFLGADVTKPVDVE
>NZ_CP016539.2|WP_068872313.1|714391_715039_+|VWA-domain-containing-protein
MKNETTELVFILDKSGSMAGLEQDTIGGFNALIDKQRKLPGEVRVTTVLFNHGYELLHDRISLEGISPMTDSDYEVGGMTALLDAVGSTIQKISNAQKGTLEKHRAGRVMFVITTDGLENSSCEYTYRKIHEMIASKKANGWEFMFLGANIDAVATAKKFGVDEDFAVDYHADAKGTELNYQVLSEAVSSFRTGKKISREWKQEIERDYEARGKK
>NZ_CP016539.2|WP_068872315.1|715285_716995_+|DUF1311-domain-containing-protein
MAKVVGRKALEFALETAQTDALKKGLKGELTLLKVLESKLTASSIVIWDPKFLEFKPDILIIDPNLGFVFVEVKNWSLAFVDQFFSNGKSATKKGMKYPLGQTDNYINELQRYINTLRKDQLDIYRLTSSLVVYTGFSKEEFEKRIEVKSWKEEDFQNYYKKHLFLEDFEYAAFRKLQSSKKFNKSVTQDFTIGELRYIADSLGDDDEEFEMKKVQSRYSENGVANQKFIRRHENKVTKKVRKLTYSLSALAIFSLLMFLIIPLGADSNESYDKAVEDAKFAMANGEYQKALGLYELAVNEKPDDHETKFLYWSLRLLNELTLIAENGDQDKVIEKIDKLRETDKIPHHLERHYQELYTVSVEKQEHENKVKEGIEEIGILVASQKFDQAQSSLDNLKTDQLTKEELDEKEIKLLALAEQIEQGQKELLRKQEVAAESEILKNPIKTEGLSNKSVYMDKLGGIEAGLADLNYLYQAGVTSNILEAEYETLKRWDDALNEIYGVLKTTLSLGEMDRLRVAQREWIVYRDYEAELASQAFEGGTFEEVTLVSVKHQITRDRCYSLVENFMK
>NZ_CP016539.2|WP_084632740.1|716999_717515_+|DUF1643-domain-containing-protein
MDVANRNWKCNEKVEAIFDSSSELDCKYRYLLKCDWDISLPKVTFVMLNPSVADTNICDPTLSRCINYAKKWGYGGINAVNLFAYISTDPKQLKKKTDPVGKLNDKYIIEAVEDSKLVVFAWGTEYGKLNNRNRKVVALLKTYKPHCLKKTKDGDPSHPLYLSKDLTPISY

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Crispr_ID: NZ_CP016539_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP016539_2

1917295-1917363

Orphan

Consensus_repeat	Method
CCGCCTTGTGTGCGGTTTTGGCCG	CRISPRCasFinder

1 spacers

DEDDh

The CRISPR arrays of NZ_CP016539_2

>merge|NZ_CP016539|2|1917295-1917363|CRISPRCasFinder
CCGCCTTGTGTGCGGTTTTGGCCGGACGGACGGTTCTGGCCTTGCCCGCCTTGCGTACGTGCCTGTCCG

>NZ_CP016539|2|2|1917295-1917363|CRISPRCasFinder
CCGCCTTGTGTGCGGTTTTGGCCG	GACGGACGGTTCTGGCCTTGC
CCGCCTTGCGTACGTGCCTGTCCG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP016539.2\|WP_068869385.1\|1927491_1928634_-\|1-deoxy-D-xylulose-5-phosphate-reductoisomerase	unknown	unknown	gnl\|CDD\|235472
NZ_CP016539.2\|WP_068869377.1\|1915056_1915335_-\|DUF503-domain-containing-protein	unknown	unknown	gnl\|CDD\|377364
NZ_CP016539.2\|WP_084632818.1\|1907656_1908691_-\|aspartate-semialdehyde-dehydrogenase	unknown	unknown	gnl\|CDD\|237845
NZ_CP016539.2\|WP_068869384.1\|1926187_1927447_-\|RIP-metalloprotease-RseP	unknown	unknown	gnl\|CDD\|272878
NZ_CP016539.2\|WP_068869382.1\|1920008_1924316_-\|PolC-type-DNA-polymerase-III	DEDDh	cd06127_DEDDh_CAS-I	gnl\|CDD\|234767
NZ_CP016539.2\|WP_068869375.1\|1913656_1914586_-\|tRNA-pseudouridine(55)-synthase-TruB	unknown	unknown	gnl\|CDD\|234959
NZ_CP016539.2\|WP_068869376.1\|1914684_1915038_-\|30S-ribosome-binding-factor-RbfA	unknown	unknown	gnl\|CDD\|234787
NZ_CP016539.2\|WP_068869386.1\|1928652_1929444_-\|phosphatidate-cytidylyltransferase	unknown	unknown	gnl\|CDD\|366491
NZ_CP016539.2\|WP_068869379.1\|1917643_1917952_-\|YlxQ-family-RNA-binding-protein	unknown	unknown	gnl\|CDD\|236077
NZ_CP016539.2\|WP_068869380.1\|1918249_1919377_-\|transcription-termination/antitermination-protein-NusA	unknown	unknown	gnl\|CDD\|237061
NZ_CP016539.2\|WP_068462811.1\|1912309_1912579_-\|30S-ribosomal-protein-S15	unknown	unknown	gnl\|CDD\|180170
NZ_CP016539.2\|WP_068869383.1\|1924397_1926101_-\|proline--tRNA-ligase	unknown	unknown	gnl\|CDD\|236405
NZ_CP016539.2\|WP_068869381.1\|1919402_1919882_-\|ribosome-maturation-factor-RimP	unknown	unknown	gnl\|CDD\|234627
NZ_CP016539.2\|WP_068869387.1\|1929440_1930235_-\|isoprenyl-transferase	unknown	unknown	gnl\|CDD\|184840
NZ_CP016539.2\|WP_068869374.1\|1912713_1913655_-\|riboflavin-biosynthesis-protein-RibF	unknown	unknown	gnl\|CDD\|235536
NZ_CP016539.2\|WP_068869370.1\|1903248_1905666_-\|DNA-translocase-FtsK	unknown	unknown	gnl\|CDD\|224588
NZ_CP016539.2\|WP_068869372.1\|1908773_1909985_-\|insulinase-family-protein	unknown	unknown	gnl\|CDD\|223685
NZ_CP016539.2\|WP_058380470.1\|1917948_1918230_-\|YlxR-family-protein	unknown	unknown	gnl\|CDD\|377288
NZ_CP016539.2\|WP_068869371.1\|1905743_1907411_-\|ribonuclease-J	unknown	unknown	gnl\|CDD\|223668
NZ_CP016539.2\|WP_068869373.1\|1910061_1912170_-\|polyribonucleotide-nucleotidyltransferase	unknown	unknown	gnl\|CDD\|236995

Protein	Function_ID	Function_description	E-value
NZ_CP016539.2\|WP_068869385.1\|1927491_1928634_-\|1-deoxy-D-xylulose-5-phosphate-reductoisomerase	gnl\|CDD\|235472	PRK05447, PRK05447, 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional.	0
NZ_CP016539.2\|WP_068869377.1\|1915056_1915335_-\|DUF503-domain-containing-protein	gnl\|CDD\|377364	pfam04456, DUF503, Protein of unknown function (DUF503). Family of hypothetical bacterial proteins.	1.28862e-34
NZ_CP016539.2\|WP_084632818.1\|1907656_1908691_-\|aspartate-semialdehyde-dehydrogenase	gnl\|CDD\|237845	PRK14874, PRK14874, aspartate-semialdehyde dehydrogenase; Provisional.	0
NZ_CP016539.2\|WP_068869384.1\|1926187_1927447_-\|RIP-metalloprotease-RseP	gnl\|CDD\|272878	TIGR00054, Putative_zinc_metalloprotease_slr1821, RIP metalloprotease RseP. Members of this nearly universal bacterial protein family are regulated intramembrane proteolysis (RIP) proteases. Older and synonymous gene symbols include yaeL in E. coli, mmpA in Caulobacter crescentus, etc. This family includes a region that hits the PDZ domain, found in a number of proteins targeted to the membrane by binding to a peptide ligand. The N-terminal region of this family contains a perfectly conserved motif HEXGH as found in a number of metalloproteinases, where the Glu is the active site and the His residues coordinate the metal cation. Membership in this family is determined by a match to the full length of the seed alignment; the model also detects fragments as well matches a number of members of the PEPTIDASE FAMILY S2C. The region of match appears not to overlap the active site domain. [Protein fate, Degradation of proteins, peptides, and glycopeptides].	1.93215e-98
NZ_CP016539.2\|WP_068869382.1\|1920008_1924316_-\|PolC-type-DNA-polymerase-III	gnl\|CDD\|234767	PRK00448, polC, DNA polymerase III PolC; Validated.	0
NZ_CP016539.2\|WP_068869375.1\|1913656_1914586_-\|tRNA-pseudouridine(55)-synthase-TruB	gnl\|CDD\|234959	PRK01550, truB, tRNA pseudouridine synthase B; Provisional.	5.51274e-165
NZ_CP016539.2\|WP_068869376.1\|1914684_1915038_-\|30S-ribosome-binding-factor-RbfA	gnl\|CDD\|234787	PRK00521, rbfA, 30S ribosome-binding factor RbfA.	3.22044e-55
NZ_CP016539.2\|WP_068869386.1\|1928652_1929444_-\|phosphatidate-cytidylyltransferase	gnl\|CDD\|366491	pfam01148, CTP_transf_1, Cytidylyltransferase family. The members of this family are integral membrane protein cytidylyltransferases. The family includes phosphatidate cytidylyltransferase EC:2.7.7.41 as well as Sec59 from yeast. Sec59 is a dolichol kinase EC:2.7.1.108.	3.22789e-66
NZ_CP016539.2\|WP_068869379.1\|1917643_1917952_-\|YlxQ-family-RNA-binding-protein	gnl\|CDD\|236077	PRK07714, PRK07714, YlxQ family RNA-binding protein.	1.25664e-43
NZ_CP016539.2\|WP_068869380.1\|1918249_1919377_-\|transcription-termination/antitermination-protein-NusA	gnl\|CDD\|237061	PRK12327, nusA, transcription elongation factor NusA; Provisional.	0
NZ_CP016539.2\|WP_068462811.1\|1912309_1912579_-\|30S-ribosomal-protein-S15	gnl\|CDD\|180170	PRK05626, rpsO, 30S ribosomal protein S15; Reviewed.	8.28055e-53
NZ_CP016539.2\|WP_068869383.1\|1924397_1926101_-\|proline--tRNA-ligase	gnl\|CDD\|236405	PRK09194, PRK09194, prolyl-tRNA synthetase; Provisional.	0
NZ_CP016539.2\|WP_068869381.1\|1919402_1919882_-\|ribosome-maturation-factor-RimP	gnl\|CDD\|234627	PRK00092, PRK00092, ribosome maturation protein RimP; Reviewed.	9.12497e-64
NZ_CP016539.2\|WP_068869387.1\|1929440_1930235_-\|isoprenyl-transferase	gnl\|CDD\|184840	PRK14830, PRK14830, undecaprenyl pyrophosphate synthase; Provisional.	3.38405e-161
NZ_CP016539.2\|WP_068869374.1\|1912713_1913655_-\|riboflavin-biosynthesis-protein-RibF	gnl\|CDD\|235536	PRK05627, PRK05627, bifunctional riboflavin kinase/FAD synthetase.	7.70756e-135
NZ_CP016539.2\|WP_068869370.1\|1903248_1905666_-\|DNA-translocase-FtsK	gnl\|CDD\|224588	COG1674, FtsK, DNA segregation ATPase FtsK/SpoIIIE and related proteins [Cell division and chromosome partitioning].	1.80297e-176
NZ_CP016539.2\|WP_068869372.1\|1908773_1909985_-\|insulinase-family-protein	gnl\|CDD\|223685	COG0612, PqqL, Predicted Zn-dependent peptidases [General function prediction only].	4.83123e-111
NZ_CP016539.2\|WP_058380470.1\|1917948_1918230_-\|YlxR-family-protein	gnl\|CDD\|377288	pfam04296, DUF448, Protein of unknown function (DUF448).	1.69769e-34
NZ_CP016539.2\|WP_068869371.1\|1905743_1907411_-\|ribonuclease-J	gnl\|CDD\|223668	COG0595, COG0595, mRNA degradation ribonucleases J1/J2 (metallo-beta-lactamase superfamily) [Translation, ribosomal structure and biogenesis; Replication, recombination and repair].	0
NZ_CP016539.2\|WP_068869373.1\|1910061_1912170_-\|polyribonucleotide-nucleotidyltransferase	gnl\|CDD\|236995	PRK11824, PRK11824, polynucleotide phosphorylase/polyadenylase; Provisional.	0

>NZ_CP016539.2|WP_068869377.1|1915056_1915335_-|DUF503-domain-containing-protein
MILLMECEFFIPTAHSLKEKRAVVKSMMTRTKQKFNVSAAEVDHQQVWQRTRLAFVTVSSSKEAAEREMEHVLRFLESNPSWECMEIEKEYL
>NZ_CP016539.2|WP_068869376.1|1914684_1915038_-|30S-ribosome-binding-factor-RbfA
MSSMRSNRVAEQMKKELGEIIGRKLKDPRIGFVTVTDVEVTGDLQQATVYISVLGDDKEKEQTLLGLAKSKGFIRSEIGQRIRLRKTPELAFEIDSSVAYGNRIESLLRDIKDPSEE
>NZ_CP016539.2|WP_068869375.1|1913656_1914586_-|tRNA-pseudouridine(55)-synthase-TruB
MEPNGILPLWKEPGMTSHDCVFRLRKILRTKKVGHTGTLDPQVDGVLPICLGRSTKVAEYITDQGKTYEAEVLIGASTETEDAEGAVVEQDLSDKMITRKQLEEVLQSLTGDIEQIPPMYSAVKVNGRKLYEYARKGESVERPVRTVHIDSIELLDEADTWEGQNIRFRIRIRCGKGTYIRTLAVQIGEALGYPAHMSQLTRTQSGSFTKEQCVTLAEVEEIAQNGDIGSILQPLAYGLSAFPFEEITPDLLFGIKNGQVLEAHPVLKTEPFVVFTYHGKPAALYKRHPEKPGKMKPEKMFGFPPTDEV
>NZ_CP016539.2|WP_068869374.1|1912713_1913655_-|riboflavin-biosynthesis-protein-RibF
MKIIHLSYPHEMKAQEQGPLSMAIGFFDGVHKGHQQVIGTAIDKAQAGGMKSAVMTFDPHPSLVLGGRKEEVFYITPLGQKMDILEEMGVDICYIVRFTSEFAKLSPEQFIEHFIDGLNVKEVVAGFDFSFGHKGGGNMALMESHGNGRYQVTTVGKIEAENEKVSSTRIRHLLKDGLVEPVHHLLGRPYRISGTVVNGDKRGRTIGFPTANVEPELGTFVPKRGVYAVRIEVQGAYFDGVCNVGYKPTFNNPDVKNLVIEVHILEFDKSIYGEKVVVEWHKRIRDEQKFSGIDELKAQISRDKDTAKRYFEV
>NZ_CP016539.2|WP_068462811.1|1912309_1912579_-|30S-ribosomal-protein-S15
MAITQERKNELINEYKVHDTDTGSPEIQIAILTEDINNLNEHLRTHKKDHHSRRGLFKMVGRRRNLLKYLRENDVQRYRELIGRLGLRR
>NZ_CP016539.2|WP_068869373.1|1910061_1912170_-|polyribonucleotide-nucleotidyltransferase
MEQTKKVYTFDWAGRELKVEVGQLAKQANGAALIRYGDTAVLSTATASKSPKPLDFFPLTVNYEERQYAVGKIPGGFIKREGRPSEKATLISRLIDRPLRPLFPDGFRNEVQVISMVMSVDQDCPSEMAAMFGSSLSLMISDIPFDGPIAGVIVGMVDGEYIINPTGEQMEKSSINLTVAGTKDAINMVEAGAKEVSEEAILEAIMFGHEEIKKLIAFQEEIAAEVGKEKAAVQLYELDADLTSELKTAVEEDMNAAVQVNEKQARNEAIAAVRERALEAYADSEDDIKKQAGQVLDKMVKDEVRRLITDEKIRPDGRGPSEIRALSSEVGVLARTHGSGLFTRGQTQAMSICTLGALGDVQIIDGLGLEETKRFMHHYNFPLFSVGETGFLRGPGRREIGHGALGERALEAVIPNEKDFPYTIRLVSEVLESNGSTSQASICASTLAMMDAGVPIKAPVAGIAMGLVKKGENYTVLSDIQGMEDHLGDMDFKVAGTAEGVTALQMDIKIDGLSREILEEALTQAKIGRLHILESMIATINAPRTTLSKFAPKIIMVKINPDKIRDVIGPGGKVINKIIDETGVKIDTEQDGTIFISSVDEEMNAKAKAMIENIVREAKVGEYYEGAVKRIEKFGAFVELFPGKDGLLHISEIQEERTKEVEDVLKMGDIVKVKVIEIDRQGRVNLSRKTVLKEEKEAAEKA
>NZ_CP016539.2|WP_068869372.1|1908773_1909985_-|insulinase-family-protein
MVTTYTCQNGLRIVSEHIPHFRSVAVGVFVNTGSRDERPEENGITHFIEHLLFKGTKTRSAKDIAREFDRIGGDLNAYTSKECTCYYAKVLDHHAPLAVEVLADMFFNSVMDPLEIDKERLVVKEEISMTEDMADDDVHEQLWRVMYPDNSIGAPILGTAETLDRFSRQQILDYMERHYTPANTVISVAGHIDAKLLTQIEALFGSFERKSPGNAHVLPTFVPGQSIKHKETEQAHICLGYPGLSLQDDRLFALAVLNNIIGGSMSSRLFQEIREDRGLAYSVYSYHSAYSDHGTLAIYGGTADHQVGEVEELIRASLQRMREGDISNVEITDSREQLKGNLLLGLESTGSRMSRNGKYELLHGKHQSADDIIRLIDAVERKHVLDLMQLTIAAPAVSIIRSQ
>NZ_CP016539.2|WP_084632818.1|1907656_1908691_-|aspartate-semialdehyde-dehydrogenase
MKTYNVAIMGATGAVGQQMKEQLEKRNFPVGDIKFLSSARSAGKQIEFNGQSHTVEEAVPESFEGVDIALFSAGGSISEKFAPEAVKRGAVVVDNTSAFRMDKDVPLVVPEVNKSALKGHTGIIANPNCSTIQMVCALQPLKEQFGLQKIIVSTYQAVSGAGIDAINELKEQSADFDNAATAEANVLPVKSSDRHYPIAFNAVPQIDQFAENGYTLEEMKMINETKKIMSDQDLAVAATCVRLPVVTGHSESVYVELDDTPSVEQVRDALGGAPGVVLQDNPANQEYPMPLMAAGKDEVFVGRIRKDLDNPNGYHLWIVSDNLIKGAALNSVQIAEALIEEQLL
>NZ_CP016539.2|WP_068869371.1|1905743_1907411_-|ribonuclease-J
MSKIKNEVIRVIPLGGVGEIGKAMYVIDIDEDLFVVDSGLMFPEDEMLGVDIVIPDVTYLEENKDRVKGIFLTHGHEDAIGSIAYLLKKVQAPVYGSKLTIALAKEHVKELGSLKHYKFFEVTNKSRMNFDKTHVTFFHTTHSIPDALGIVFHTSEGAIVHTGEFKFDQSMQGSYRPDYAKMAKLGEDGVLMLLSDSTEAERPGYTTSETVIADHILTAFHQAPGRILVSLYSSNFIRIQQVFDIAHQTGKKVAVIGKSLEKSYEVGLRLGYLKVDEDTVISMKDAEKYNDDEVVIIVTGNQGEPLEALDKMVRRQHKDVRINETDTVLITFTPSPGMEVPMFQTMNKLAKAGAKVLTSNKKVHVSGHGSQEDLKMMLNLMKPKYFIPIQGEYKMLIAHSKLAQQVGIAKSDIFIADKGDIVEYRKEKVRMSGRVTTGNVLIDGIGIGDVGNIVLRDRKLLSQDGIFIIVVTLNRKEKRIASGPEIISRGFVYVRESEQLLDESSQLVRKIVDKYVTRDAFEWNNIKQEIRDTLNSYLYQQTKRRPMIIPIIMEY
>NZ_CP016539.2|WP_068869370.1|1903248_1905666_-|DNA-translocase-FtsK
MAPSRTNKKSTTKPRTKPRTKPKPRAKAKKRQPVPMIAYEVTGLIMIGIAILMVFRLGLIGRMFNNIAEYLIGYLAFLAPLALIAAALHIMVKRGLPKIRAKIAVGSLFLFAGALLISHLIWAAGSILPITSANVISETSKMTQMSGTIWGNYEAAGGGFFGALLYALLHVLFATAGTWVIAVILLSIGAIILTGKAAAPVIAERLPAAGEAMRSLAERFKPERKPVKKQPRRKNAPEKVLEMNEQLAYDDALEEETETTLVFDQETEREPEEESDKEPIISAFTEKVKPKRQDAIEEQPKAETADEIRHVDPETGEILKEPVMSMKEEAENEDYALPPMDLLTLPPHSDQSGEYSGIQKNAKKLEKTFQSFGVRAKVTQVHLGPAVTKYEVLPDVGVKVSKIVSLHDDLALALAARDIRIEAPIPGKSAIGIEVPNTEVAVVSLREVLESEENNKPDSKLLFGLGRDVTGQAVMTELNKMPHLLVAGSTGSGKSVCINGIITSIIMRAKPHEVKMMMIDPKMVELNVYNGIPHLLAPVVTDPRKAAQALKKIVSEMERRYELFSHTGTRNIEGYNDYVDTFNAENDEKHPKLPFIVVIVDELADLMMVASNEVEDAITRLAQMARAAGIHLIIATQRPSVNVITGVIKANIPSRIAFAVSSAIDSRTILDMGGAEKLLGRGDMLFLGAGQSKPVRVQGAFLSDTEVEKIVDFSIEQQKAQYQEDMIPSDVEEVSIDQETDELYDEAVQLVTEMQTASVSMLQRRFRVGYSRAARIIDQMEQHGVVGPYEGSKPRQVLVPKQEEY
>NZ_CP016539.2|WP_068869379.1|1917643_1917952_-|YlxQ-family-RNA-binding-protein
MNKEKILQFLGLATRARKLVTGEELVISEVRRGNAKLVIVAEDASENTRKKLHDKCNSYNVPVRIGASRYEIGHAIGKEARVVLAITDNGFAKKMTHLFDEN
>NZ_CP016539.2|WP_058380470.1|1917948_1918230_-|YlxR-family-protein
MAMQKKIPLRKCVATGEMHPKKEMIRVVRSKEGEVFVDLTGKKSGRGAYVSKSEDAIELARKKKVLDKQLEVKVPGEIYEELVHAVRREQLKS
>NZ_CP016539.2|WP_068869380.1|1918249_1919377_-|transcription-termination/antitermination-protein-NusA
MSSELLDALEVLEKQKGISRDVLIEAIEAALVTAYKRNFNQAQNVRVDLNLDTGTMLVYSRKDVVEEVEDDRLQISLEDAHAINPVYEIGDIVEEEVTPRNFGRIAAQTAKQVVTQRVREAERGLIFEEYVDRADDIVNGIVERMDARNLYVGLGKVEAVLPQTEQMPNESYQPHDRIKVYITKVERTTRGPQVFVSRTHPGLLRRLFENEVPEIYDGIVEIKSIAREAGDRSKISVHATDEEVDPVGSCVGSRGGRVQTIVNELGGEKIDIVEWSEDPVVFVANALSPSKVLDVQVSEDDKSTTVVVPDYQLSLAIGKRGQNARLAAKLTGWKIDIKSETDARELGIYPSAESAAIQSADDEDADGFDFYDEEE
>NZ_CP016539.2|WP_068869381.1|1919402_1919882_-|ribosome-maturation-factor-RimP
MSKITEQIEAMAQPIIDELELELVDVEFVKEGKNWFLRVYVDNPQEPIDIDQCAIVSERLSEQLDATDPIEQNYFLEVSSPGAERPLKKEKDFEKALGSFIYIKTYEPVEDAKEFEGYLKSFDEEQVEIEIKIKTRRKTISIPRKKIAMIRLAIDFSAS
>NZ_CP016539.2|WP_068869382.1|1920008_1924316_-|PolC-type-DNA-polymerase-III
MINEQDAKMRFKLLLQHLELTDDVHMPYFEGAELTRMTVHKKDRAWRFIVKLKQVLPLELFITFRERLHTKFSSIASVQIYIETPAQQTDGDQVAAYWRHVVDELADMAPPLRERLLAQAPVWNGNKLIVDCCHEHEMMALKSKYTEKLGQVFQQFGFPAFSIDFQLSAEDQQEARAAFMEERKAEEEAMAKRAVADMKKRETERKENGAPSGPFQMGAAIKPDEPIVEIRSIVDEERRVTIEGFVFDVEVRELRSGRSLLTVKMTDYTDSILVKMFSRDKEDAELMAQAKKGMWLRARGSIQTDTFVRDLVMMSNDMVEINPAVRKDTAEVKRAELHLHTPMSQMDAVSSVESLVAQAAKWGHPAIAVTDHAGVQAFPDAYAASQKHGIKAIFGLEANLVDDGVPIAYEERHALLEEETFVVFDLETTGLSAVYDTIIELAAVKIKGGQIIDKFERFANPHHPLSATTIDLTGITDDMVRNAPEVEEVIREYHEWAGDHIMVAHNASFDMGFLYVAYKKYGIDKTHATIDTLELARMLHPEMKNHRLNTLAKKFNIELTQHHRAIYDTEATAYLLTHLLKEADDKGILYHDQLNDYVGTGDSYKRSRPTHCTLLAKDQEGLKNLFKLVSASHINYFYRVPRIPRSLLQRHRKGLLVGSGCDKGEVFEAVMQKSMEEVERTAQFYDYLEVHPKEVYQPLIDREMIRDEWNLEDIIRKLVKVSRKLDKPLVATGNVHYLDETDAIFRQVLIGSQGGANPLNRSTLPKVHFRTTNEMLDAFDFLGEETAREIVVDNSLKVADMIDVVKPIKDELYTPKIEGADEEVRELSYTMARSIYGDELPEIVEARIEKELKSIIGHGFAVIYLISHKLVKKSLDDGYLVGSRGSVGSSLVATLTEITEVNPLPPHYVCRKCKKSEFFDDGSVGSGFDLKDKDCPDCGIPYKKDGQDIPFETFLGFKGDKVPDIDLNFSGEYQPQAHNYTKVLFGEDNVYRAGTIGTVAEKTAYGYVRGYANDRDMTIRGAEIDRLVQGCSGVKRSTGQHPGGIIVVPDYMDIYDFSPIQFPADAQDSEWKTTHFDFHSIHDNLLKLDILGHDDPTVIRMLQDLSGIDPKTIPTDDPEVMKIFAGPESLGVTKEQIGCKTGTLGIPEFGTRFVRQMLEDTKPTTFSELVQISGLSHGTDVWLGNAQELIHNGTCQLSDVIGCRDDIMVYLIYQGLESSLAFKIMESVRKGKGLTPEMEAAMKEKAVPNWYIESCKKIKYMFPKAHAAAYVLMAVRIAYFKVHFPVLYYAAYFTVRAEDFDVNAMAKGSQSIRAKVDEINSKGLEASTKEKNLLTVMELALEMVERGYSFQKVDLYKSSADEFLIEGNTLIPPFNAIPGLGTNAAKSIVAARAEGEFLSKEDLQQRGRVSKTIIEYMDDHGCLEGMPDANQLSLF
>NZ_CP016539.2|WP_068869383.1|1924397_1926101_-|proline--tRNA-ligase
MRQTLSFIPTLRETPADAEVKSHQLLLRAGFIRQNTSGIYSFLPLGKRVLHKVEKIIREEMEAINSVEVFMPALQQAELWQETGRWYSYGDELMRLKDRNDREFALGATHEEIITSLLRDEIKSYKKLPLTLYQIQSKFRDEKRPRFGLLRGREFLMKDAYSFHATPESLDKTYDDMMQAYSNIFSRLGLNFRAVIADSGAIGGKDNHEFMVLSDIGEDTIAYSDSSPYAANIEMAAVNVDYPKSDEQAHPIEKVATPDQKTIVQVADFLGTTPENCIKTLVFKADDELIVVLSRGDHEVNDVKVKHISGAKLIDMATPEDVREMLSCDIGSIGPVGLPEGVRVFADNAVKSIVNGVTGANEDGVHLKNVTPDEDFTVEAYGDLRFVKEGDPSPDGNGTIQFAKGIEVGHIFKLGTTYSEPMKATFLNDQGKAMPYIMGCYGIGVSRIVAAVAEQFQDDSGFTWPTAVAPYEIHVVPVNVKDDVQRETGEEIYEQLKAQGFEVLLDDRKERAGVKFADADLIGLPIRITVGKRAAEGILEVKIRETDETVEWHKDEVLDKVREFFKK
>NZ_CP016539.2|WP_068869384.1|1926187_1927447_-|RIP-metalloprotease-RseP
METVLAFIIIFGALVFFHELGHFLFAKRAGILVREFAIGMGPKILGITRGETLYTVRLLPIGGYVRMAGEEMDAIHLQAGHRIGLLLDDQGLAKKVILNQKRVYPDILFLEVEQADLEKELYIKGYDEDEQLVNIKVARDAVVEENGRETILAPYDRTFDAKNLPNRFMTIFAGPFFNFILAFFIFTAIGMMQGVPTFEPVISEVTEDSPAEQAGMQDGDLVTEIEGQPISTWDELVESVQDSAGTPLDFQVERDGEPLSFTITPELSEQSAEQVGVIGVLYQSPVEKDFFGSFAYGAEQTVFWFKEIFRLLGMLVTGQFTIDALSGPVGIYKTTEEVAQYGIFTLMSWAGMLSINLGIMNLLPLPALDGGRLMFFFLEALRGKPVDKQKEGMVHFVGIMLLMLLMIVVTWNDIQRFFF
>NZ_CP016539.2|WP_068869385.1|1927491_1928634_-|1-deoxy-D-xylulose-5-phosphate-reductoisomerase
MKKVILLGATGSIGVQTADIIREHPEEFTLAGFSAGRNMEVTRKLIQEFRPEIVCVQLAEDAQQLQQEFEGVQFVHGSKGLIDAATYDADVLVNAVIGSVGLEPTLEAIKLGRTIAIANKETLVTAGHLVMQSAKKYGADILPVDSEHSALFQALNGEKIEQASRLILTASGGSFRDRTRDELADVTVEDALNHPNWSMGSKITIDSATMLNKGLEVIEAHVLFDFAYDDIDVLLHRESIIHSMVEFQDTSVMAQLGTPDMRVPIQYALSYPDRLPRPAAKRLDLAEISQLNFKAMDYERFRALKLAFDAGREGGTMTTVLNAANEQAVAMFLNRQIGFLQIEEFIERAMLEHKTIASPDLETILAADSETRKTVENMLK
>NZ_CP016539.2|WP_068869386.1|1928652_1929444_-|phosphatidate-cytidylyltransferase
MKQRIITGAIAAALFIPFVIIGGIPFIILVYILATIGFQELLKMKGRSLMSIPGLISLVALYAFMLPGDWSQQVYEWTGYLKVEFVFMAVILLLIHTVVVKNSFTFDDAAFAILGTLYVGLGFYYLIETRESGLAVLIFALLVVWFTDSGAYFTGRKIGKRKLWPEISPNKTIEGFLGGIIWAVGIALVFAYFAGMEQSMALVVIVAIVASIFGQLGDLVESALKRHFNVKDSGKMLPGHGGILDRFDSILFVMPLLHFLHFI
>NZ_CP016539.2|WP_068869387.1|1929440_1930235_-|isoprenyl-transferase
MFNKLLKRNIEPVMVEYGERAMAVAGAGVPSHVAIIMDGNGRWAKKRSMPRVAGHHEGMKTVRKITKLASHLGVDVLTLYAFSTENWKRPKMEVDFLMRLPEEFLSSFLPELIEENVRVEMMGYVADLPAHTIQAIQKAKEATKHNDGLVLNFALNYGSRAEIVDAVKGLAALVQAGKLEPSAISEEMITNRLMTSELPEPDLLIRTSGEVRLSNFMLWQLAYTEFWFTDTLWPDFGEDCLLEAFEVYQKRNRRYGGLKEEETH

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Crispr_ID: NZ_CP016539_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP016539_3

2364963-2365051

Orphan

Consensus_repeat	Method
AATTGTGTGGAACACAGGGACAGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP016539_3

>merge|NZ_CP016539|3|2364963-2365051|CRISPRCasFinder
AATTGTGTGGAACACAGGGACAGCGAAGCACCAAAACCCCGCTGCGACGCGGTTCTTCCCGCGCGAATTGTGTGTAACACAGGGACAGC

>NZ_CP016539|3|3|2364963-2365051|CRISPRCasFinder
AATTGTGTGGAACACAGGGACAGC	GAAGCACCAAAACCCCGCTGCGACGCGGTTCTTCCCGCGCG
AATTGTGTGTAACACAGGGACAGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP016539.2\|WP_068869770.1\|2370334_2370952_-\|HAD-family-hydrolase	unknown	unknown	gnl\|CDD\|223620
NZ_CP016539.2\|WP_068869759.1\|2359703_2361410_+\|phosphoenolpyruvate--protein-phosphotransferase	unknown	unknown	gnl\|CDD\|224006
NZ_CP016539.2\|WP_068869772.1\|2372165_2372525_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP016539.2\|WP_157101657.1\|2365083_2365254_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP016539.2\|WP_068869755.1\|2352976_2354182_-\|mannitol-1-phosphate-5-dehydrogenase	unknown	unknown	gnl\|CDD\|235031
NZ_CP016539.2\|WP_068869756.1\|2354187_2356257_-\|BglG-family-transcription-antiterminator	unknown	unknown	gnl\|CDD\|226234
NZ_CP016539.2\|WP_068869763.1\|2363076_2364702_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP016539.2\|WP_068869761.1\|2361835_2362282_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP016539.2\|WP_068869764.1\|2365365_2365776_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP016539.2\|WP_068869758.1\|2359437_2359707_+\|phosphocarrier-protein-HPr	unknown	unknown	gnl\|CDD\|237503
NZ_CP016539.2\|WP_068869766.1\|2366569_2367979_-\|sodium:alanine-symporter-family-protein	unknown	unknown	gnl\|CDD\|224040
NZ_CP016539.2\|WP_068869767.1\|2368198_2368714_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|180687
NZ_CP016539.2\|WP_068869769.1\|2369811_2370285_+\|VanZ-family-protein	unknown	unknown	gnl\|CDD\|377417
NZ_CP016539.2\|WP_068869760.1\|2361549_2361822_-\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|376540
NZ_CP016539.2\|WP_068869771.1\|2371089_2371671_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|368849
NZ_CP016539.2\|WP_068869754.1\|2352043_2352781_+\|lipolytic-protein-G-D-S-L-family	unknown	unknown	gnl\|CDD\|239947
NZ_CP016539.2\|WP_068869762.1\|2362374_2363010_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP016539.2\|WP_068869768.1\|2368995_2369781_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP016539.2\|WP_068869757.1\|2356998_2358942_-\|PTS-mannitol-transporter-subunit-IICBA	unknown	unknown	gnl\|CDD\|237905
NZ_CP016539.2\|WP_157101658.1\|2366093_2366264_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP016539.2\|WP_068869770.1\|2370334_2370952_-\|HAD-family-hydrolase	gnl\|CDD\|223620	COG0546, Gph, Predicted phosphatases [General function prediction only].	1.06791e-30
NZ_CP016539.2\|WP_068869759.1\|2359703_2361410_+\|phosphoenolpyruvate--protein-phosphotransferase	gnl\|CDD\|224006	COG1080, PtsA, Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) [Carbohydrate transport and metabolism].	0
NZ_CP016539.2\|WP_068869755.1\|2352976_2354182_-\|mannitol-1-phosphate-5-dehydrogenase	gnl\|CDD\|235031	PRK02318, PRK02318, mannitol-1-phosphate 5-dehydrogenase; Provisional.	0
NZ_CP016539.2\|WP_068869756.1\|2354187_2356257_-\|BglG-family-transcription-antiterminator	gnl\|CDD\|226234	COG3711, BglG, Transcriptional antiterminator [Transcription].	1.33713e-45
NZ_CP016539.2\|WP_068869758.1\|2359437_2359707_+\|phosphocarrier-protein-HPr	gnl\|CDD\|237503	PRK13780, PRK13780, phosphocarrier protein HPr; Provisional.	1.24964e-34
NZ_CP016539.2\|WP_068869760.1\|2361549_2361822_-\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|376540	pfam01381, HTH_3, Helix-turn-helix. This large family of DNA binding helix-turn helix proteins includes Cro and CI. Within Neisseria gonorrhoeae NGO_0477, the full protein fold incorporates a helix-turn-helix motif, but the function of this member is unlikely to be that of a DNA-binding regulator, the function of most other members, so is not necessarily characteristic of the whole family.	5.50636e-12
NZ_CP016539.2\|WP_068869766.1\|2366569_2367979_-\|sodium:alanine-symporter-family-protein	gnl\|CDD\|224040	COG1115, AlsT, Na+/alanine symporter [Amino acid transport and metabolism].	7.11325e-175
NZ_CP016539.2\|WP_068869769.1\|2369811_2370285_+\|VanZ-family-protein	gnl\|CDD\|377417	pfam04892, VanZ, VanZ like family. This family contains several examples of the VanZ protein, but also contains examples of phosphotransbutyrylases.	0.000318591
NZ_CP016539.2\|WP_068869771.1\|2371089_2371671_-\|hypothetical-protein	gnl\|CDD\|368849	pfam06338, ComK, ComK protein. This family consists of several bacterial ComK proteins. The ComK protein of Bacillus subtilis positively regulates the transcription of several late competence genes as well as comK itself. It has been found that ClpX plays an important role in the regulation of ComK at the post-transcriptional level.	5.48021e-31
NZ_CP016539.2\|WP_068869754.1\|2352043_2352781_+\|lipolytic-protein-G-D-S-L-family	gnl\|CDD\|239947	cd04506, SGNH_hydrolase_YpmR_like, Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid. This subfamily contains sequences similar to Bacillus YpmR.	2.98395e-19
NZ_CP016539.2\|WP_068869767.1\|2368198_2368714_-\|hypothetical-protein	gnl\|CDD\|180687	PRK06770, PRK06770, hypothetical protein; Provisional.	6.23687e-30
NZ_CP016539.2\|WP_068869757.1\|2356998_2358942_-\|PTS-mannitol-transporter-subunit-IICBA	gnl\|CDD\|237905	PRK15083, PRK15083, PTS system mannitol-specific transporter subunit IICBA; Provisional.	0

>NZ_CP016539.2|WP_068869763.1|2363076_2364702_-|hypothetical-protein
MVTKESIMKSVDRELTLLIEEYERQLHRKDIEIKELKNQLLKRNAENVELQLVVRQQAKEIELKKNQAFSYLSTLEEGNLEEVRKILELNDSEEVAALASAMEQMWRKRENGMLAKLFEEVNSPHYRKQLKNSEFNYRLLAIIQEILSATDSIDYDSDALIEKAMEYAIQSIGTNGEQSLREYLKAQHQNVYPALLQRNESHLIRTYFRLLLTFTMKQVLQESLKHMVTVEWSFLVSAMSKEDFEFYFWYSYLFDGEQRILDRAKEFYPQGMQNVKGFRLFYQAAKSTDVTEEAYREARNTFRSNKNLTNMEQELVLEKVDQRIKPRLQSSVKAHEAPIYIITSTEYDKLKQTLGLQRKRMKLPLYQKDKLNQIYLYKEVSVWFSKVRGRAFLVNKEYREFSKQIAPLVIKTGEMRYTLPPEGKAGIQSSSFVWPSTEVKKKKENPKNEEKTLNETSELKRLGYQITGVNRAKRWQALELAVPKIGLKKVVGIISYNILLRKGQKNGERKFAYAIAEWEHDLEKLKKHYYRNDFKWPNTKK
>NZ_CP016539.2|WP_068869762.1|2362374_2363010_-|hypothetical-protein
MEDLLLKAGVYAIINKRLNTVYVGETEACFLIRWIEHVSRVSKFLDERDKALLYLDKHTEYIVLKELDPIQVSRKEFYRYEEEATLFYKNKGWVVISKANYSPLMHEVIYQDTEGIIKRYKKAIKHMIKTLGLKNTKENNVGRLYTALYKKLNRHFDTDVWERAETNIIDTLTKEELEFILLDLFPRYREKKLNLDREEYKKMDRQLSLFE
>NZ_CP016539.2|WP_068869761.1|2361835_2362282_-|hypothetical-protein
MRKHEIVELGNMEAFQSMLLINAQQEQQTKKPGVWSSLLATYIRQREIISYNPYPESNEFEPDDEVPPSIKLLTRNIDPRFENELYRWGLQNFSVANYRIIFAVYDYYKVLLLHVFDKQYNNDVKREDIKPAELVYDEYLGQFPSKYR
>NZ_CP016539.2|WP_068869760.1|2361549_2361822_-|helix-turn-helix-transcriptional-regulator
MDAFLKKAEGVLGTEKVKELKREAYVAAQIKTKRKELGWSQQQLADRTGLQKSTIGRIEAGLNSPTIETIGLIAEELGEDIIIPGKKETV
>NZ_CP016539.2|WP_068869759.1|2359703_2361410_+|phosphoenolpyruvate--protein-phosphotransferase
MKHLSGIAASNGIAIAKAFRLEHPELTVDKKNVADPQAEIDRFNQAVAESITELEAIKKRTAEEISDKEAAIFGAHLLVLEDPELIGPITDKINTDSVNAEFALHETSTMFVDMFEAMDNEYMKERAADVRDVTKRVLAHLLGVQIQNPSMITDEVVVIAEDLTPSDTVQLNPKYIKGFITDIGGRTSHSAILARTLEIPAVVGAKTAMGTIDNGTIVIIDGLAGEVLLDPDEATLAEYKEKQAAYASQKAEWAKLKNEATVTKDGVEVELGANIGTPKDLVGVLDNGGEAIGLYRTEFLYMGRDDFPTEQEQTDAYAEVLQGMDGKPTVVRTLDIGGDKELSYLKLPKELNPFLGLRAIRLCLEMPDMFRTQLRALLRASVHGNLKIMFPMIATLDEFRQAKALLLEEKAKLEAEGTPVSDSIEVGIMVEIPSTAVMADTFAKEVDFFSIGTNDLIQYTMAADRMNESVSYLYQPYNPAILRLIKTVIDASHKEGKWTGMCGEMAGDEIAIPILLGLGLDEFSMSASSILKARSQLSRLSKADMEGHIDHILGLTTSQEVEDYVKNL
>NZ_CP016539.2|WP_068869758.1|2359437_2359707_+|phosphocarrier-protein-HPr
MVEKTFTITDPAGMHARPASALVGSLTKFQSDITMEFKDKKVNLKSILGVMSLGVPSGSQVQIAADGADETEAMETIERVLKEQGISDQ
>NZ_CP016539.2|WP_068869757.1|2356998_2358942_-|PTS-mannitol-transporter-subunit-IICBA
MAEERSSLKVKVQKFGNFLSSMVMPNIGAFIAWGLITALFIPTGFFPNEQFASLVGPMITYLLPLLIGYTGGKLVHDQRGGVIGAIATMGVIVGAPDTPMFLGAMIMGPLSAWVIKQFDHLIEGKIRSGFEMLVNNFSSGIIGGALAIFAYLGIGPAVSALTQVLVAGVDWLLETGLLPLTSILIEPGKILFLNNAINHGILTPLGLEQVQQAGRSVLFLLEANPGPGLGVLLAFMFFGKGIAKQSAPGAIIIHFFGGIHEIYFPYVLMKPMLLLSVILGGMSGVFTLVLMGGGLMAPASPGSIFAITAVTPPEGMAYIANFTAILVAATVSFLISAVVLKRSKDTASDEDVEAATKRMEEMKGKKSSVAGALGASAGAAGTASAAGTFPDDVHKIVFACDAGMGSSAMGASLLSKKVKEAGMDIKVTNSAISSIPADTQIIITQDKLTPRAKDKRPDAYHISVDNFLSSPEYDRLIERLQHGVTEEQSELVEESEANAATGPEEDAPLLTEDNIFINKSFRTKEEAIRFAGDALVKAGYVEPSYVDEMIKREEITTTYMGNDVAIPHGTEEAKKAVLKSGFTVVQVPNGVDFDGEKAKLIFAIAGKDGTHLEILSGIAVICAEQSNVDELVAAKSPKELLDILNSK
>NZ_CP016539.2|WP_068869756.1|2354187_2356257_-|BglG-family-transcription-antiterminator
MFVTVREKSIIELVTRMAGKHTVNSLAAYLDVSARTIQRDLKSVEKLLEPFGLLMKRDGADALYLDGNNEKIYRLMQKLAASSVPEASPEEKKLRLLVILLEEGAFFKKQVLSNQLGISTTTLTSYLDELANWLRKFSVTLSRQRGVGMEVSGAEAHKRHALAAYFLIHFYEELIESLYYLQQGTTQDGKVLGYFNPAYLAAANQLVGEHISEQQIRLADSDYTGLVVHLALALQRTESGLLLEPAIESEHNGEYAMIAAICEELRERFGVELAKRDIEFLAVVLKGSKIQASNVLYYDSVLLGKLVKNLIRDVSAQLGVDLTKDFSLYQGLLAHMEPLIFRLKQKLESFNPLTDEIKKKYPVLFLAVKEALETEFDDLEFSADEVAYIVLHFGSALLMNEERVQIEAVVVCPTGIGTSKMLASRIQKELPEIDSVKILSVHDFQTANLKEYDLVISTIRLPVTDVDYLMVSPLLNEQDISHIENYLQHNIQQVTRNKAYLPSTAVEPGRKERRDVRALLRDIQQVQAGMDALLDHFRVVRMEGLDYWAVLENVLEGMERDGLLDAAGTLRQLKEREAKGGLGIPETQMALFHCRDESVRELMFQVVHLEAPSVVKGMDGRDMRMVNVLLMLTPVELGAREQEIMSLISSSLIESEEAMLVFQSSNEGAIRGKLEELFYDYLQNNLMKD
>NZ_CP016539.2|WP_068869755.1|2352976_2354182_-|mannitol-1-phosphate-5-dehydrogenase
MKQAIHFGAGNIGRGFIGALFSESGYHVSFVDVAETIIDGLNAQGKYRVKLAQEKDESILVENVSGINNMKDEEAVIAKIQQATYLTTAIGPNILPRIAPLIARGIEARVTGNFATGADLEPMSELDVASDMSAGSEKLYIIACENQIGATDILKGHIMSHLSDEAKADLAGKVYFFNSAVDRIVPIQEGGSLDVLVEPYYEWVVETTEDLPEVSGMTIVDDLAPFIERKLFTVNTGHAVIAYHGYLAGKPTIDKTLADPEIEREVRETLKETGAYLVKQYGLDEKTHLAYIDKNIARFKNAYLNDGVTRVGRAPIRKLGPEDRLVRPAVQAQKAGLSYSHLAKAIAAAMLFDYAEDEEAVKIQELIAQSGPELVLKEVSGLEADSELAQEVVRQYRAMKK
>NZ_CP016539.2|WP_068869754.1|2352043_2352781_+|lipolytic-protein-G-D-S-L-family
MKKLIKLIVVLLLASLLVAPGAFAKSDNAKESLVAVGDSIPFGLNLGQTNQNPAKTSYPYLIGKLADLRVRNLGVPGWQSDQLLEALQTDQKYRQAIIHSDYVAVTIGNNDLLAILREAATESGGNQALFQQLLQLKLSQSDVFSNIQQIITEIRSLTDSPIVLYNVYNPFQLTDPLHYVADAVLPNINAAFAGLAFANEDVYLADAYTAFGNNQALYILPGDIHPTNAGQAKLAEIGLQALSLY
>NZ_CP016539.2|WP_157101657.1|2365083_2365254_-|hypothetical-protein
MTAIVKEEMAMEIPNKTYLKTYEEYINGYKQYKLEKAGLQARAYVDSENEGLQAEA
>NZ_CP016539.2|WP_068869764.1|2365365_2365776_-|hypothetical-protein
MMGIRHATSTIEKTPRIAGEETAKRTGERHVGDGPDSGMQANVHEFISWPLDRDVSVQLSRDEEEGLNKAELQISLENMKRLTRALIEHPIPLPTSYSQSALSEDGMHTLRIASKEAFPDFVKRLVDALAVLPRKK
>NZ_CP016539.2|WP_157101658.1|2366093_2366264_-|hypothetical-protein
MKTGGKKFQKNIISIYLLLETWWGIFKVWREAGSVQNAIIAGVLWGVMACYLIHKL
>NZ_CP016539.2|WP_068869766.1|2366569_2367979_-|sodium:alanine-symporter-family-protein
MEGFLQGVADFSAWIWGIPLITLLLVSGLYMTFKLGFFQFRYFGYIFGQTFGSIFRRPKGEGTVTPFQALTSALSSTIGAANIVGVPAAIMFGGPGAIFWMWVIALIGMALKFAESVLAVEYREKNGNGEFVGGPMYYMTKGLNMKWLGVWFSFALMIELIPSIMVQGNSIASTVEATFAIPALWTGIITAVLVSIVVFGGIKRIGKVTEIFVPFMALMYVGGAVVILLMNVKAVPEFFMLIFSNAFSPAPVMGGFAGAAIVEVIRWGFARGLYSNEAGLGTAPIAHAAATTDHPVRQGFWAVIGIVVDTLIVCTATAFVILSSGVWTQEGAMENSSALTSLAFEQYFGDFGAILVTIALIFFVLSTILVVVFYGAKQAEFLFGLKAAHGMQVVYIIAVVLGAVGAAEVIWGFLDIMLAAILIPNVLAILLLSNKVKDLKNEFFTSDEYYRKDLKVKKRAKRQKAVREA
>NZ_CP016539.2|WP_068869767.1|2368198_2368714_-|hypothetical-protein
MRKVLRIIIILLVVLGVLAGAGYWVYQSFTATDEQEISKAAEEAAEVLDEDAVAQSRQSDLPVDTVGLTEGQFQVKLHQMTHQKIVATEKRGKIQMTPARIEEMLKILRANEGAYDEYSFYEDALTEWEQGKFSNAVDVHNTIWEWHNGTVGRATGFMTKEQEAEYVEDNF
>NZ_CP016539.2|WP_068869768.1|2368995_2369781_+|hypothetical-protein
MTKKKRKRLLIGIVLVALSLPSITPMLMEIAYKIEMGIRYDIDELNSHRTDYAGAPDDANYYGNIIRASHITTGEPYFNAWDNLVHPSDIRLTVNGETVETLHGYPVQLLQFGELAAEGLDRYNGAITYWTVEDKFTDKDFFAIAIAQNGYDMRFHRDGEVMPGYVDIEDREFKLIKIAKDGAVSEELFTFNNKSKLQTQLITEDFIGPVHHYLRPGYLYPTLLSLVSPQLYPWLTTIAGVGLILFNFPYRGMKRRNTAHN
>NZ_CP016539.2|WP_068869769.1|2369811_2370285_+|VanZ-family-protein
MKIKYIPALLWALCILVATNNYNFTALFMSDIDFHFRLFPDLSDLFIISDIQLGSKLYVFQKTGHALSFGILYLLLNRALTEPRVTLMLCSLFALFTEFLQLFFWRSGRLVDALIDIAGIYAAYRLGESVKAHGGMIPAFFTALQKIFTALEGEKPH
>NZ_CP016539.2|WP_068869770.1|2370334_2370952_-|HAD-family-hydrolase
MDSIIFDLDGTLWNPLDVSVTVWNKVLADNGVEKTLTKDDLRGIMGLQADQVGEKLFPHLSKAQCTKLTEESSELECVYLRQQGGELYAGVEHVLERLSQKYNLYIVSNCQEGYIESFYEYHGLDRHFVDFENPGRTGLSKGENIQLLMERNGVDCAVYVGDTEGDRDAAELAGIPFVYAAYGFGDANGYDHRIESFDGLLELFD
>NZ_CP016539.2|WP_068869771.1|2371089_2371671_-|hypothetical-protein
MTKRKNFKLEMNMEKEIGQDTVLILPDYDEHGCLNSMIYHTGGKIHIDSKPFDLIDTNLRFRGSSMRGAVEGSAAILGKLNKNPIIIDRDKGIILLPSQSALLDGCVWLSLQHIMECYSLEGNRTKVALSNGCSIILDGSKKSIQRRMEKAYELQFKMEAQKRIFENGKRVMENAYHLEKQAGGVNYEHLAGE
>NZ_CP016539.2|WP_068869772.1|2372165_2372525_-|hypothetical-protein
MSEEEAFPFFMAWWIHLLGPMPMLFIRRWCFLFLFSIPENWERHVPMSGTILTTEILSGRNLLDQESDFVPVCQTISLLKADFFNEISKAETGRSCENAVIFSKKAANNDQMMHTNDLF

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Crispr_ID: NZ_CP016539_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP016539_4

2866294-2866387

Orphan

Consensus_repeat	Method
TTTGCTCTACTTTCGCTATGCTCAAGCATCGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP016539_4

>merge|NZ_CP016539|4|2866294-2866387|CRISPRCasFinder
TTTGCTCTACTTTCGCTATGCTCAAGCATCGCTTCCGTCGGCTCAAATTCAAGCCGCCTTTATTTGCTCTACTTTCGCTATGCTCAAGCATCGC

>NZ_CP016539|4|4|2866294-2866387|CRISPRCasFinder
TTTGCTCTACTTTCGCTATGCTCAAGCATCGC	TTCCGTCGGCTCAAATTCAAGCCGCCTTTA
TTTGCTCTACTTTCGCTATGCTCAAGCATCGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP016539.2\|WP_068870553.1\|2858243_2858711_+\|glyoxalase	unknown	unknown	gnl\|CDD\|319968
NZ_CP016539.2\|WP_068870574.1\|2874217_2874463_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP016539.2\|WP_068870572.1\|2871009_2874111_-\|efflux-RND-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|223911
NZ_CP016539.2\|WP_068870579.1\|2877867_2878758_+\|4-hydroxy-tetrahydrodipicolinate-synthase	unknown	unknown	gnl\|CDD\|235107
NZ_CP016539.2\|WP_068870557.1\|2861055_2861700_-\|LytTR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|335768
NZ_CP016539.2\|WP_068870570.1\|2869481_2870894_-\|DHA2-family-efflux-MFS-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|129794
NZ_CP016539.2\|WP_068870565.1\|2865948_2866134_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP016539.2\|WP_068870559.1\|2861799_2863305_-\|acetyl-CoA-hydrolase/transferase-family-protein	unknown	unknown	gnl\|CDD\|274588
NZ_CP016539.2\|WP_068870568.1\|2868135_2869347_-\|NupC/NupG-family-nucleoside-CNT-transporter	unknown	unknown	gnl\|CDD\|224883
NZ_CP016539.2\|WP_068870563.1\|2865002_2865899_+\|MerR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|133379
NZ_CP016539.2\|WP_068870575.1\|2875913_2876756_-\|metalloprotease	unknown	unknown	gnl\|CDD\|282131
NZ_CP016539.2\|WP_068870561.1\|2863528_2864734_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|340883
NZ_CP016539.2\|WP_068870577.1\|2876815_2877412_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|130661
NZ_CP016539.2\|WP_068872615.1\|2874616_2875783_-\|TraB/GumN-family-protein	unknown	unknown	gnl\|CDD\|224828
NZ_CP016539.2\|WP_068870581.1\|2878801_2879638_-\|STAS-domain-containing-protein	unknown	unknown	gnl\|CDD\|132912
NZ_CP016539.2\|WP_068870555.1\|2859293_2860808_-\|acetyl-CoA-hydrolase/transferase-family-protein	unknown	unknown	gnl\|CDD\|274588
NZ_CP016539.2\|WP_068872614.1\|2856096_2856909_+\|carbohydrate-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223472
NZ_CP016539.2\|WP_084632921.1\|2855104_2855998_+\|sugar-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224096
NZ_CP016539.2\|WP_068870567.1\|2866577_2867876_-\|NCS2-family-permease	unknown	unknown	gnl\|CDD\|225161
NZ_CP016539.2\|WP_068870551.1\|2857006_2858080_-\|23S-rRNA-(adenine(2503)-C(2))-methyltransferase-RlmN	unknown	unknown	gnl\|CDD\|237717

Protein	Function_ID	Function_description	E-value
NZ_CP016539.2\|WP_068870553.1\|2858243_2858711_+\|glyoxalase	gnl\|CDD\|319968	cd16361, VOC_ShValD_like, vicinal oxygen chelate (VOC) family protein similar to Streptomyces hygroscopicus ValD protein. This subfamily of vicinal oxygen chelate (VOC) family protein includes Streptomyces hygroscopicus ValD protein and similar proteins. ValD protein functions in validamycin biosynthetic pathway. The vicinal oxygen chelate (VOC) superfamily is composed of structurally related proteins with paired beta.alpha.beta.beta.beta motifs that provide a metal coordination environment with two or three open or readily accessible coordination sites to promote direct electrophilic participation of the metal ion in catalysis. VOC domain is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.	1.59402e-35
NZ_CP016539.2\|WP_068872615.1\|2874616_2875783_-\|TraB/GumN-family-protein	gnl\|CDD\|224828	COG1916, COG1916, Uncharacterized homolog of PrgY (pheromone shutdown protein) [Function unknown].	2.7596e-123
NZ_CP016539.2\|WP_068870572.1\|2871009_2874111_-\|efflux-RND-transporter-permease-subunit	gnl\|CDD\|223911	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms].	0
NZ_CP016539.2\|WP_068870579.1\|2877867_2878758_+\|4-hydroxy-tetrahydrodipicolinate-synthase	gnl\|CDD\|235107	PRK03170, PRK03170, dihydrodipicolinate synthase; Provisional.	3.47555e-164
NZ_CP016539.2\|WP_068870557.1\|2861055_2861700_-\|LytTR-family-transcriptional-regulator	gnl\|CDD\|335768	pfam04397, LytTR, LytTr DNA-binding domain. This domain is found in a variety of bacterial transcriptional regulators. The domain binds to a specific DNA sequence pattern.	3.73532e-33
NZ_CP016539.2\|WP_068870570.1\|2869481_2870894_-\|DHA2-family-efflux-MFS-transporter-permease-subunit	gnl\|CDD\|129794	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. [Cellular processes, Toxin production and resistance, Transport and binding proteins, Other].	1.22668e-104
NZ_CP016539.2\|WP_068870559.1\|2861799_2863305_-\|acetyl-CoA-hydrolase/transferase-family-protein	gnl\|CDD\|274588	TIGR03458, Propionyl-CoA:succinate_CoA_transferase, succinate CoA transferase. This family of CoA transferases includes enzymes catalyzing at least two related but distinct activities. The E. coli YgfH protein has been characterized as a propionyl-CoA:succinate CoA transferase where it appears to be involved in a pathway for the decarboxylation of succinate to propionate. The Clostridium kluyveri CAT1 protein has been characterized as a acetyl-CoA:succinate CoA transferase and is believed to be involved in anaerobic succinate degradation. The propionate:succinate transferase activity has been reported in the propionic acid fermentation of propionibacterium species, where it is distinct from the coupled activities of distinct nucleotide-triphosphate dependent succinate and propionate/acetate CoA transferases (as inferred from activity in the absence of NTPs). The family represented by this model includes a member from Propionibacterium acnes KPA171202 which is likely to be responsible for this activity. A closely related clade not included in this family are the Ach1p proteins of fungi which are acetyl-CoA hydrolases. This name has been applied to many of the proteins represented by this model, possibly erroneously.	0
NZ_CP016539.2\|WP_068870568.1\|2868135_2869347_-\|NupC/NupG-family-nucleoside-CNT-transporter	gnl\|CDD\|224883	COG1972, NupC, Nucleoside permease [Nucleotide transport and metabolism].	9.28058e-176
NZ_CP016539.2\|WP_068870563.1\|2865002_2865899_+\|MerR-family-transcriptional-regulator	gnl\|CDD\|133379	cd01104, HTH_MlrA-CarA, Helix-Turn-Helix DNA binding domain of the transcription regulators MlrA and CarA. Helix-turn-helix (HTH) transcription regulator MlrA (merR-like regulator A), N-terminal domain. The MlrA protein, also known as YehV, has been shown to control cell-cell aggregation by co-regulating the expression of curli and extracellular matrix production in Escherichia coli and Salmonella typhimurium. Its close homolog, CarA from Myxococcus xanthus, is involved in activation of the carotenoid biosynthesis genes by light. These proteins belong to the MerR superfamily of transcription regulators that promote expression of several stress regulon genes by reconfiguring the spacer between the -35 and -10 promoter elements. Their conserved N-terminal domains contain predicted HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules. Many MlrA- and CarA-like proteins in this group appear to lack the long dimerization helix seen in the N-terminal domains of typical MerR-like proteins.	4.45618e-23
NZ_CP016539.2\|WP_068870575.1\|2875913_2876756_-\|metalloprotease	gnl\|CDD\|282131	pfam04228, Zn_peptidase, Putative neutral zinc metallopeptidase. Members of this family have a predicted zinc binding motif characteristic of neutral zinc metallopeptidases (Prosite:PDOC00129).	5.20837e-130
NZ_CP016539.2\|WP_068870561.1\|2863528_2864734_+\|MFS-transporter	gnl\|CDD\|340883	cd17325, MFS_MdtG_SLC18_like, bacterial MdtG-like and eukaryotic solute carrier 18 (SLC18) family of the Major Facilitator Superfamily of transporters. This family is composed of eukaryotic solute carrier 18 (SLC18) family transporters and related bacterial multidrug resistance (MDR) transporters including several proteins from Escherichia coli such as multidrug resistance protein MdtG, from Bacillus subtilis such as multidrug resistance proteins 1 (Bmr1) and 2 (Bmr2), and from Staphylococcus aureus such as quinolone resistance protein NorA. The family also includes Escherichia coli arabinose efflux transporters YfcJ and YhhS. MDR transporters are drug/H+ antiporters (DHA) that mediate the efflux of a variety of drugs and toxic compounds, and confer resistance to these compounds. The SLC18 transporter family includes vesicular monoamine transporters (VAT1 and VAT2), vesicular acetylcholine transporter (VAChT), and SLC18B1, which is proposed to be a vesicular polyamine transporter (VPAT). The MdtG/SLC18 family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	6.07648e-57
NZ_CP016539.2\|WP_068870577.1\|2876815_2877412_-\|hypothetical-protein	gnl\|CDD\|130661	TIGR01600, lambda_minor_tail, lambda-like phage minor tail protein L. This model detects members of the family of phage lambda minor tail protein L. This model was built as a fragment model to allow detection of fragmentary sequences, as might be found in cryptic prophage regions. [Mobile and extrachromosomal element functions, Prophage functions].	0.00171904
NZ_CP016539.2\|WP_068870581.1\|2878801_2879638_-\|STAS-domain-containing-protein	gnl\|CDD\|132912	cd07041, STAS_RsbR_RsbS_like, Sulphate Transporter and Anti-Sigma factor antagonist domain of the "stressosome" complex proteins RsbS and RsbR, regulators of the bacterial stress activated alternative sigma factor sigma-B by phosphorylation. The STAS (Sulphate Transporter and Anti-Sigma factor antagonist) domain of proteins related to RsbS and RsbR which are part of the "stressosome" complex that plays an important role in the regulation of the bacterial stress activated alternative sigma factor sigma-B. During stress conditions RsbS and RsbR are phosphorylated which leads to the release of RsbT, an activator of of the RsbU phosphatase, which in turn activates RsbV which leads to the release and activation of sigma factor B. RsbS is a single domain protein (STAS domain), while RsbR-like proteins have a well-conserved C-terminal STATS domain and a variable N-terminal domain. The STAS domain is also found in the C- terminal region of sulphate transporters and anti-anti-sigma factors.	1.17189e-34
NZ_CP016539.2\|WP_068870555.1\|2859293_2860808_-\|acetyl-CoA-hydrolase/transferase-family-protein	gnl\|CDD\|274588	TIGR03458, Propionyl-CoA:succinate_CoA_transferase, succinate CoA transferase. This family of CoA transferases includes enzymes catalyzing at least two related but distinct activities. The E. coli YgfH protein has been characterized as a propionyl-CoA:succinate CoA transferase where it appears to be involved in a pathway for the decarboxylation of succinate to propionate. The Clostridium kluyveri CAT1 protein has been characterized as a acetyl-CoA:succinate CoA transferase and is believed to be involved in anaerobic succinate degradation. The propionate:succinate transferase activity has been reported in the propionic acid fermentation of propionibacterium species, where it is distinct from the coupled activities of distinct nucleotide-triphosphate dependent succinate and propionate/acetate CoA transferases (as inferred from activity in the absence of NTPs). The family represented by this model includes a member from Propionibacterium acnes KPA171202 which is likely to be responsible for this activity. A closely related clade not included in this family are the Ach1p proteins of fungi which are acetyl-CoA hydrolases. This name has been applied to many of the proteins represented by this model, possibly erroneously.	0
NZ_CP016539.2\|WP_068872614.1\|2856096_2856909_+\|carbohydrate-ABC-transporter-permease	gnl\|CDD\|223472	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism].	3.49457e-88
NZ_CP016539.2\|WP_084632921.1\|2855104_2855998_+\|sugar-ABC-transporter-permease	gnl\|CDD\|224096	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism].	1.11141e-82
NZ_CP016539.2\|WP_068870567.1\|2866577_2867876_-\|NCS2-family-permease	gnl\|CDD\|225161	COG2252, COG2252, Xanthine/uracil/vitamin C permease [Nucleotide transport and metabolism].	8.78012e-119
NZ_CP016539.2\|WP_068870551.1\|2857006_2858080_-\|23S-rRNA-(adenine(2503)-C(2))-methyltransferase-RlmN	gnl\|CDD\|237717	PRK14455, PRK14455, ribosomal RNA large subunit methyltransferase N; Provisional.	0

>NZ_CP016539.2|WP_068870565.1|2865948_2866134_-|hypothetical-protein
MRYFKSNMEKLVNQEPELKKRLKVLMKEMELEKSFALKALYHSEVADSGPFMKQYQEIDNQ
>NZ_CP016539.2|WP_068870563.1|2865002_2865899_+|MerR-family-transcriptional-regulator
MYNIKAAAKILDMPKVTIRSWETRYNAITPARTESGHRLYSDQNLEDLKWLKIQVQENGMKISEAVKQLHASRKQFYHPEATDSTEPIEYAQQIEELYQAAVEIDIDRFNYLLDLKFSLFHHQIVFFQIIAPLMVRIGAEWEDGQISVAHEHMITNIIQQRFNQFFRVFPVAPHLPKVLALSPSGEHHQLGLLLFSLFLRENGFHVVYTGPDTPIDGLAEMVAKQDFQLVCMSVTTPKSRPVAEQYIKELSAAIPNLHFLLGGQGIDCNDEKVNRYCIGTTLESWQQWLDGFKATRTS
>NZ_CP016539.2|WP_068870561.1|2863528_2864734_+|MFS-transporter
MSKDQRKKILILMINMFIAIGSFGIIIPILPSYLVSINQGGMAAGLMIAIFAAAQFLFSPIAGKWADQYGRRIMIIWGLAGLTLSMFIFYASDFIWVLYFSRVIGGIGAAMLVPAIFAYIADITTFDQRAKGTSLVSASMSLGIVIGPGIGGFLADFSLKLPFLVSALVSLLAVLFSIFVLKDSDAEKADPDLALTMTQSESMFKKIARSTSVPYFLPLVITLVMSFGLLAYESVLGLYLDNQFDSTAKDIAFMITATGTVSVIVQLFIVDRIVSRFGEIGVLITFLGVATGGFLASLFASSYAMFFGVSLIIFLATSILRPVLNTLISKLAEGEVGFAMGMNNAYMSIGNVMGPLLAGILFDINIVFPFILGLLLLLATLVITAGWQRSRAAKQARIVEQ
>NZ_CP016539.2|WP_068870559.1|2861799_2863305_-|acetyl-CoA-hydrolase/transferase-family-protein
MDQRHDRIKLTALQERVATAEQAASWIKDGMAIGFSGFTRAGDAKAVPNALAKRGEKESLKIDVYTGASLGSGTDGRFAQAGIVQKRAPYQSDSLMRAAINSGEVQFVDHHLSQTAEWVRGGVAGPLDFAIIEALGITEEGLLIPTTSVGNSAVFALHAKELIIEINTAQPAEMEGIHDCFEPGALGKRQPIPLVSPRDRIGTKGIPIDVSKVKGIVWTHQVDSPSPIEPPDKETEVMAGHLLNFLRGEVEAGRLDQNLAPLQSGVGSVANAVLHGLLDSEFEGLELYSEVLQDAVFDLLDSGKALFASASAITLSKPYMERIYQDFGRYRDRLVLRPQEISNHPEIIRRLGLISINTALEFDLYGNVNSTHVAGTRMMNGIGGSGDFGRNAQLAIFVTKSTAKDGRISCVVPFASHIDHTEHDVDVLVTEYGFADIRNLAPRERAERIIANCVHPDYRSQLQGYFDRAIAQGGHTPHVLDEALSWHARYTRTGTMLKNST
>NZ_CP016539.2|WP_068870557.1|2861055_2861700_-|LytTR-family-transcriptional-regulator
MEKMTPGPLLDVMGELFSDEVSIAVSNMEEYTYYRPSKRIDLKIKAGDKVREGTIAHKALTTGQKASEFINREVFGVPYHGMAVPFEEDGELAGCVMAIYPAYTEGKSVVTVKSPDGWKPIPFTEVRYLEVKDRKTHVHSADFSGTNKNSLQEFEYLLPRDSFIRCHRSFIVNVHHIEEIHPDTHSTFVLAMDNGDRLPVSQSYSSYFRKLLGF
>NZ_CP016539.2|WP_068870555.1|2859293_2860808_-|acetyl-CoA-hydrolase/transferase-family-protein
MEKKLERIKAAELQDRVVTAQEAAAWIQDGMTLGLSGFTRAGDVKAVPYALVERAETESFKVNVFTGASLGSDIDRLFAEAGIVNKRLPFQAEPAMRKAINAGEMYFVDHHLSHTAEWIRSGVIEPIDFAIVEALSITEDGMIIPTTSVGNSSVFVKHAKNIIVEINAAQPELFEGIHDIYDTGKQGERDPIPLTSVDQRIGTKGIPVDMDRVRGIVFTHQEDSPSNIVAPDAETKIMADHLLNFFRSEIEAGRLTETLAPLQSGIGSVANAVLHGMIDSEFKNLEVYSEVLQDAVFDLIDAGKVDFASCCSITLSEPKMKQVFSDFDQYRDKIIMRPQEISNHPEVVRRLGLISINTALEFDMYGNVNSTHVSGTKMMNGIGGSGDFARNARLAIFVTKSTAKDGKISSVVPFASHIDHTEHDVDVVVTEQGYADLRGLAPRQRVEAIIENCVHPDYRPQMREYYEEALTRGGQTPHVLEKAFSWHESLAKNGTMLVKKEQLV
>NZ_CP016539.2|WP_068870553.1|2858243_2858711_+|glyoxalase
MAAITHVGLAVPDLDKAIKWYRKVFDFHILAGPFDFDAEAEGPGSMTTDLQGADIRKMRNVHLMSSDGFGIELFEFQDPSFSEEPPRHAGFFHIALVVDDIVETIEQIVQHGGRQRSKMWNVNKGKPHYLVYTEDPFGNIIELYSRNTSEMYGNR
>NZ_CP016539.2|WP_068870551.1|2857006_2858080_-|23S-rRNA-(adenine(2503)-C(2))-methyltransferase-RlmN
MKNSIYGLTIEQLKDWFVENGQKKYRAEQVWDWLYIKRVTEFSEMKNLSKDCIELLENNFAIRTLDQAVKQESSDGTIKFLFRLQDGNLIETVLMRFKYGNSVCVTTQVGCNIGCSFCASGLLKKSRDLNAGEIVEQIMQVQAHFDAEKKDERVSHIVVMGIGEPFDNYTNLMDFLHVVNSQKGLAIGARHITVSTSGIVPKIYDYADEGLQVNLAISIHAPTNELRSRIMKINKAYPIEKLMAAIDYYLEKSNRRITFEYILLRDVNDHVEEANKLAKLLENKRHLSYVNLIPYNSVDEHDQYQQSTPEAISAFFDALKKKGINCGVRQEQGADIDAACGQLRSKQIKKEKKPATV
>NZ_CP016539.2|WP_068872614.1|2856096_2856909_+|carbohydrate-ABC-transporter-permease
MLRLINFVLLAAGSLMILSPLWWMFSTSLKTMAEVMSFPPTFFPESWNWSNYIRTWEAAPFTQYTINTLVITTLVVIGNVLSNSFIAYGFAKIPFRGRNVLFAIVLATMMIPGFVTLIPQYVLFAKLGWVNTYYPLIVPAFFGSAFNIFLLRQFYMTIPNELIEAAKMEGASHFYIWRKIGLPLTKPAIATVAIFSFNGAWNDFLGPLLYLNDENLYTLQIGLQVFKGQLNTQWNYLMAGSLLVLLPVIIIFFFFQKYFIQGINLQSGGK
>NZ_CP016539.2|WP_084632921.1|2855104_2855998_+|sugar-ABC-transporter-permease
MRRKETMYGYIFVMPWIIGFLAFTAGPLLFSLFASFTNYNITSQMDFVGTENYQGLFTEDGLFWTSLWNTLYYVLFSVPLTTIGAIFLSALLNQDVPGIRVFRTLYYLPAVLSGVGVYLLWMQLLDPGTGMINLVLGWFGIDGPNWLFDPAWTKPSLIFMKLWSVGGAMLLYLASMQGVSKTLYEAAEIDGANTFRKFFHITLPMITPVIFFDVVTSLIGGFQIFQEAYVMSSNGEGGPANSLLFYNLYMWRQAFENFNMGYAMAMSWILFIIVFILTMINLKLAPRWVHYEGGDNR
>NZ_CP016539.2|WP_068870567.1|2866577_2867876_-|NCS2-family-permease
MANWMDRFFGLNENGTTIKREMTAGLIGFFTVVYIIAVNSLILSESGMPIEYAIIGTIAASVIGALLMGFWGNAPILLIPGMGINALFSYTLVQSMGLSWQEALAVVFVSGVIFVFVAFTRFSKMLSEAVPDSLKEAITVGLGLFLMLLGLEKGGLVGPGDGSILSLGSLSDPLVLSTVMTFLLAIILFIRNVPGNFLITIVLGTAIAYFFGMIDLGQLSEPGVDTAEAFAVFGAMSFGNFLSTTFWVAVFSLTMVLVFENIGLVHGQVNFIGRPEKYSRAFQATSVSTMASGFLGTSPTVASVESAAAMAAGGRTGLTSLTAGFMFMGAAFFIPLIKIIPDSAIAPILIIIGGLMLQNIKNLDMKDMSETFPALLIIALIPFTYSIADGIAIGFILYPVLKVAIGKWREVSPALYVIACLFFVNYVFHVVG
>NZ_CP016539.2|WP_068870568.1|2868135_2869347_-|NupC/NupG-family-nucleoside-CNT-transporter
MNLLWGIFGIIVVLGIAFLFSDGKKSIKPRTILGGLAIQITFAFMVLEWEFGRNALLGLSRGVQNIINYAGEGIAFVFGPAADTEGFGFVFAFQVLTIIIFFSSLISVLYYLGIMQWIIRLLGGALSKLLGTSKAESISASANIFVGQTEAPLVVRPFLPNMTKSELFAVMTGGLASVAGSTLAGYALLGVPLEYLLAASFMAAPAGLVMAKIMIPEQEEIEEKEFVMEKDDRSVNVVDAAARGASDGLQLALNVGAMLLAFIALIALLNGVLGGIGGWFGADNITIQGILGFIFAPLAFAIGVPWEEAVQAGSYIGQKLVLNEFVAYTAFAPEIANLSPKTVIIVSFALCGFANFSSLAILLGGLGAMAPSRRPDIARLGMRAIAAGMLASLLSAAIAGMFV
>NZ_CP016539.2|WP_068870570.1|2869481_2870894_-|DHA2-family-efflux-MFS-transporter-permease-subunit
MRLGKVELEARHRKPLLAVLMAGVFVAILNQTLLATALPHIMEDLDITANTAQWLTTVFMLVNGVMIPITAFLINKYTTRHLFFVAMGLFAAGTIICALAPGFATLMLGRIVQASGAGIMMPLAQTVLFVIFPVEKRGQAMGMFGLIISFAPAIGPTLSGYLVGQYPWRSLFYIVIPIAILDLALAYFFLRNVTERTFPKIDILSIMLSTIGFGGLLYGFSSAGSAGWGSTSVIASIGVGAVALWFFIRRQGKLKQPILEFRVFKYGLFTLSTILSIIVFVTMIGSATILPIYMQDMHGFTALESGIMLLPGAVIMGLMNPIAGRIFDKVGGKWLAVAGLSIVTGSTFQFTVLTAETAFVYLTVMHAIRMFGVALVMMPVTTAGLNQLPDRLIPHGTAMSNTMRQVSGSIGTALLVTIMTSAALDPARYGVEGLIRGVNISFMVTGGLSAIGIVLAFFMKNPKKQESGDA
>NZ_CP016539.2|WP_068870572.1|2871009_2874111_-|efflux-RND-transporter-permease-subunit
MQYILERSKLFIFLILILMLVGVYTFLTLPQREIPETPPGLVLVSTILPGAEPEEVETSITNPIERELQSIDGIASMDSISANSASIITLEIEDGVEPDGLINTIQQQAQRAAGSFPEQAQETSVEKLDLTFPLVSYMFYGDEAELAELERPLADLSDEVEAVSGVAGTQVKGLNGEQVVIELDGDALAENQLQPFEVLESLQQANQPLSLGTHSDGEQQFLLTVQQSEGIEKLRELQVGQAAVPLADVASVELAEMPAEDIVTFEGEPAVSYTVFLQTGQDVPSVDDRVSEVIEGFNEDLPAGISAERYESQAENVNEIFSSLYISLLIAVLAVLVVTTAGLTLYGAFAVALTVLASVLIGLIPIPALGVDLNQISVIGLIIAIGILVDDSIVVNDNIQRRYKLGDHAMAGAINGVREVYPSIVSSSLAIVVTFSPLLLLSGGNGAFIKALPSILITTILASTVLSITLVPMMQYLRTKRKKRKISDTPGFLGKPLEKLAQVYSGKVLKGVLKRPWLTGIGGLAIATALLSLALFTPFEFFPEADREEVTMNVRLAEGTTIEETDAFIREVTEEVAQEDGDVNETAVFTGEGLPNLFASSMDNTGANTGQVAFRIDREATSASAFIDKWEPELRERYPDAEIFLDTIVQGPPVGAPVTVTATGEDIDELAALRDTLEEEMLANGATVVTDNLGASVPAIEYVPERETLEDNGIALSTVTNQLQLLTQGVPLYTLYEGQTPYEVVLKQAGITEGEPIDLAEFSLPASTASGEQAETGGEAGPPAAAQPGPPELVGLDELLTAEETTALAQVPHKSGDRAITLRAFGEADDFEAQMLEVVDNARADLPSGYELSTGGENSDQEAFFAEIGILFLVVLLLVYLVIAFQFKSFGLPFLVLIAVYLGISGAILGLFLTQTPLSFLGVMGIVSLTGIVVRNAVVLIDFVEERRLTGDFNIEEAIIESGYARIKPIVLTSLTSIVALLPVAFSGDPLFEPLAVTIIAGLAFSGIFTLVMIPALYLLFHRIVRKEKKQTA
>NZ_CP016539.2|WP_068870574.1|2874217_2874463_-|hypothetical-protein
MDFLLMGILLWSLVIAALLLGLYGVWKRSWKALFWGGLASLLPMGLIFMGDDSWVFKLSILPPLLLFIGAYFFKQRRPEKV
>NZ_CP016539.2|WP_068872615.1|2874616_2875783_-|TraB/GumN-family-protein
MTEDNITRLEVGGKQFILIGTAHVSKRSAEQVKEVVERERPDSVCIELDAQRYDSVMQDKKWKETDIFKIIKDKKASLLLMNLAISSFQNRLADQFGIKPGSEMIQGIHSAQETGAELVLADRNIQVTFSRIWGNIGLMGKVQLISSVFFSIFSKESISEEELEKMKQQDTLNAVMDDFTKAFPRIKKPLIDERDQYLAQKIKEAPGDKVVAVLGAAHIPGITREIHEEQDLKALNEVPKKSKWPKIIGWAIPAIILSIIAYTFYANPAAGLDQTVSWILWNGTLAAIGAAVAFGHPLAILTAFVAAPISSLNPLVAAGWFSGLTQAFIRRPNVGDFDTLSKDVFTVKGFWDNKVTRVLLVIVLTNLGSSLGTFIGGADVLRLFFENL
>NZ_CP016539.2|WP_068870575.1|2875913_2876756_-|metalloprotease
MKWKGRAGSRNVEDRRGRGVGGPVLAGGGIGGLLIVLLITFLGGDPGAILGDGGGGSSSEPYVASEREEELADFVSVVLADTEEVWAEVFAEEGMEYVEPTLVLFSGSVQSACGMAGAATGPFYCPADSKLYIDLSFYDELERQFNAPGDFAMAYVVAHEVGHHVQNLLGVLGDVQQARNQLSETEYNQLQVRLELQADYLSGVWAHHAQGMGYLEEGDLEEALTAASAVGDDTIQKRTRGYAVPESFTHGTSEQRKEWFYKGFRAGDLNDGNTFNAPDL
>NZ_CP016539.2|WP_068870577.1|2876815_2877412_-|hypothetical-protein
MDDHRMDRKLNIHTGGEQMGFHASLHEHRFEVTPYAWLDRLFKAHPLKGTGRLVDFGSGKGRLNFFAHHLFGTPSAGVEVDPSLHKASLRNLQRYRGKADIEFINAYAQDYEIDPQDRWFYFFNPFSDPVFMSVVDRIQKSAADHPREVEVILFYPAVEYTDFLERRTAFELAEDIELPVEEKDPRERFLVYRLPIWD
>NZ_CP016539.2|WP_068870579.1|2877867_2878758_+|4-hydroxy-tetrahydrodipicolinate-synthase
MKFGQVITAMATPFDANGEIDFQATTNLVEHLINNGSDGIVVAGTTGESPTLSTDEKVALFVHVVTVADGRAKIIAGTGSNNTRASVALTQQAEQAGVDGIMLVTPYYNKPSQEGMYRHFEAIANATTLPVMLYNIPGRSVVNLSVDTIVRLSLIDNITCVKEASGDLDAASEIIERTSSDFAVYSGDDSLTLPMLSVGGTGIVSVAAHIIGNEMQEMIKLFRTGDTVGAAALHRKLLPTMKALFAAPSPSPVKAALNLSGVPVGGVRLPMLALTEEETATLQQFLPSPKQAAVTN
>NZ_CP016539.2|WP_068870581.1|2878801_2879638_-|STAS-domain-containing-protein
MEKEMALFGKRVEEDKYMIAQLIQEERQSALPEEMVEEKREFSELVLEERARFIELLGKAMQDSCNEAKNMAVITQWGNATGNFFLEQGMTLDTALEETGLYRKHLATLIKSEGRRLDISPEITYDAAELLHALLDHATYAYMHAYTVSYQNKLAAARQEFLELSAPVVPISDSVAILPLIGSVEIDRAHYILERTLLSASELKITTLLLDLSGVIRVDTMVAEQILKIIQSLELIGVECVLTGIRPETAQSLTSLGIDVRTLRIGGSLKRALEEVYN

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

957592 : 967352

Synechococcus_phage(50.0%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_068868566.1\|957592_958888_+	adenylosuccinate lyase	A0A1B3B081	Gordonia_phage	1.9e-17	31.3
WP_068868567.1\|958904_959618_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	G8EYA2	Synechococcus_phage	4.1e-46	41.9
WP_068868568.1\|959617_959872_+	phosphoribosylformylglycinamidine synthase subunit PurS	M4QPE7	Synechococcus_phage	4.7e-05	34.1
WP_068868569.1\|959868_960552_+	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA
WP_068868570.1\|960535_962761_+	phosphoribosylformylglycinamidine synthase subunit PurL	A6N228	Microbacterium_phage	4.1e-161	42.9
WP_068868571.1\|962736_964158_+	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	1.8e-53	34.3
WP_068868572.1\|964169_965231_+	phosphoribosylformylglycinamidine cyclo-ligase	A0A0E3F760	Synechococcus_phage	2.7e-62	44.7
WP_068868573.1\|965220_965805_+	phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	3.6e-24	34.2
WP_068868574.1\|965816_967352_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	Q58MG4	Prochlorococcus_phage	3.4e-74	50.7

DBSCAN-SWA_2

1249019 : 1258212

Staphylococcus_phage(85.71%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_068868797.1\|1249019_1250450_+	o-succinylbenzoate--CoA ligase	A0A2H4PQM9	Staphylococcus_phage	2.5e-63	30.8
WP_068868798.1\|1250440_1251502_+	o-succinylbenzoate synthase	NA	NA	NA	NA
WP_068868799.1\|1251533_1252571_-	zinc ABC transporter solute-binding protein	NA	NA	NA	NA
WP_068868800.1\|1252679_1252910_-	membrane protein insertion efficiency factor YidD	A0A2H4PQM5	Staphylococcus_phage	1.5e-21	65.2
WP_068868801.1\|1253030_1253477_+	DNA starvation/stationary phase protection protein	A0A0A7RTZ1	Clostridium_phage	2.5e-46	63.0
WP_068868802.1\|1253544_1254003_+	NUDIX domain-containing protein	A0A2H4PQM4	Staphylococcus_phage	3.5e-19	35.7
WP_068872531.1\|1254007_1254802_+	S9 family peptidase	A0A2H4PQM6	Staphylococcus_phage	7.5e-33	36.2
WP_068868803.1\|1254878_1256471_-	phosphoenolpyruvate carboxykinase (ATP)	A0A2H4PQN1	Staphylococcus_phage	3.5e-191	64.0
WP_068872532.1\|1257015_1258212_+	methionine adenosyltransferase	A0A2H4PQS6	Staphylococcus_phage	8.9e-163	75.3

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP016539

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection