CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP015406	Flavonifractor plautii strain YL31 chromosome, complete genome	2 crisprs	RT,WYL,csa3,cas2,cas1,cas4,cas7,cas8c,cas5,cas3,DEDDh,cas14j	1	2	4	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP015406_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP015406_1

1734481-1735055

TypeI

I-C

Consensus_repeat	Method
ATTTCAATCCACGCACCCCGCGAGGGGTGCGAC	CRISPRCasFinder
ATTTCAATCCACGCACCCCGCGAGGGGTGCGAC	CRT
ATTTCAATCCACGCACCCCGCGAGGGGTGCGAC	PILER-CR

8 spacers

cas2,cas1,cas4,cas7,cas8c,cas5,cas3

The CRISPR arrays of NZ_CP015406_1

>merge|NZ_CP015406|1|1734481-1735055|CRISPRCasFinder,CRT,PILER-CR
GTTTAATCCACGCCACCCCGTGAGGGGTGCGACGCGTTACAATGTCCTGCTCCTCGCCGCTGATGTAATTTCAACCCACGCACCCCGCGAGGGGTGCGACTTATACCGGGGATGCTTGGTGATGTCGTATTTCTCACTATTTCAATCCCCGCACCCCGTGAGGGGTGCGACAGGTAGCCGAAGCTGTTGGCCCCCGTCTCAATGCCATTTCAATCCACGCACCCCGCGAGGGGTGCGACAGTTCCACCGCTTCCCCGGCCTCCTGCCCGGCCGATTTCAATCCACGCACCCCGCGAGGGGTGCGACGCCAGTCAAATTCTCGTCTCAAAATCGTGTGGCAATTTCAATCCACGCACCCCGCGAGGGGTGCGACAAGTATCGCAGCGTCACTACAGGCTATGGGAGTAATTTCAATCCACGCACTCCGCGAGGGGTGCGACATGGTAATGCCATATCCGGGATTGGCCATCTCATATTTCAATCCACGCACCCCGCGAGGGGTGCGACCAGTGCCGGCGGTGGTGTGCGGCTACAAGCTGGGGATTTCAATCCACGCACCCCGCGAGGGGTGCGAC

>NZ_CP015406|1|1|1734481-1735055|CRISPRCasFinder
GTTTAATCCACGCCACCCCGTGAGGGGTGCGAC	GCGTTACAATGTCCTGCTCCTCGCCGCTGATGTA
ATTTCAACCCACGCACCCCGCGAGGGGTGCGAC	TTATACCGGGGATGCTTGGTGATGTCGTATTTCTCACT
ATTTCAATCCCCGCACCCCGTGAGGGGTGCGAC	AGGTAGCCGAAGCTGTTGGCCCCCGTCTCAATGCC
ATTTCAATCCACGCACCCCGCGAGGGGTGCGAC	AGTTCCACCGCTTCCCCGGCCTCCTGCCCGGCCG
ATTTCAATCCACGCACCCCGCGAGGGGTGCGAC	GCCAGTCAAATTCTCGTCTCAAAATCGTGTGGCA
ATTTCAATCCACGCACCCCGCGAGGGGTGCGAC	AAGTATCGCAGCGTCACTACAGGCTATGGGAGTA
ATTTCAATCCACGCACTCCGCGAGGGGTGCGAC	ATGGTAATGCCATATCCGGGATTGGCCATCTCAT
ATTTCAATCCACGCACCCCGCGAGGGGTGCGAC	CAGTGCCGGCGGTGGTGTGCGGCTACAAGCTGGGG
ATTTCAATCCACGCACCCCGCGAGGGGTGCGAC

>NZ_CP015406|1|1|1734481-1735055|CRT
GTTTAATCCACGCCACCCCGTGAGGGGTGCGAC	GCGTTACAATGTCCTGCTCCTCGCCGCTGATGTA
ATTTCAACCCACGCACCCCGCGAGGGGTGCGAC	TTATACCGGGGATGCTTGGTGATGTCGTATTTCTCACT
ATTTCAATCCCCGCACCCCGTGAGGGGTGCGAC	AGGTAGCCGAAGCTGTTGGCCCCCGTCTCAATGCC
ATTTCAATCCACGCACCCCGCGAGGGGTGCGAC	AGTTCCACCGCTTCCCCGGCCTCCTGCCCGGCCG
ATTTCAATCCACGCACCCCGCGAGGGGTGCGAC	GCCAGTCAAATTCTCGTCTCAAAATCGTGTGGCA
ATTTCAATCCACGCACCCCGCGAGGGGTGCGAC	AAGTATCGCAGCGTCACTACAGGCTATGGGAGTA
ATTTCAATCCACGCACTCCGCGAGGGGTGCGAC	ATGGTAATGCCATATCCGGGATTGGCCATCTCAT
ATTTCAATCCACGCACCCCGCGAGGGGTGCGAC	CAGTGCCGGCGGTGGTGTGCGGCTACAAGCTGGGG
ATTTCAATCCACGCACCCCGCGAGGGGTGCGAC

>NZ_CP015406|1|1|1734548-1735055|PILER-CR
ATTTCAACCCACGCACCCCGCGAGGGGTGCGAC	TTATACCGGGGATGCTTGGTGATGTCGTATTTCTCACT
ATTTCAATCCCCGCACCCCGTGAGGGGTGCGAC	AGGTAGCCGAAGCTGTTGGCCCCCGTCTCAATGCC
ATTTCAATCCACGCACCCCGCGAGGGGTGCGAC	AGTTCCACCGCTTCCCCGGCCTCCTGCCCGGCCG
ATTTCAATCCACGCACCCCGCGAGGGGTGCGAC	GCCAGTCAAATTCTCGTCTCAAAATCGTGTGGCA
ATTTCAATCCACGCACCCCGCGAGGGGTGCGAC	AAGTATCGCAGCGTCACTACAGGCTATGGGAGTA
ATTTCAATCCACGCACTCCGCGAGGGGTGCGAC	ATGGTAATGCCATATCCGGGATTGGCCATCTCAT
ATTTCAATCCACGCACCCCGCGAGGGGTGCGAC	CAGTGCCGGCGGTGGTGTGCGGCTACAAGCTGGGG
ATTTCAATCCACGCACCCCGCGAGGGGTGCGAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP015406.2\|WP_021631007.1\|1730823_1731636_-\|energy-coupling-factor-transporter-transmembrane-protein-EcfT	unknown	unknown	gnl\|CDD\|223692
NZ_CP015406.2\|WP_007489339.1\|1727922_1728624_-\|CvpA-family-protein	unknown	unknown	gnl\|CDD\|367140
NZ_CP015406.2\|WP_007489327.1\|1736552_1737215_-\|CRISPR-associated-protein-Cas4	cas4	cd09637_cas4_CAS-I:CAS-II:CAS-V	gnl\|CDD\|187768
NZ_CP015406.2\|WP_065534612.1\|1724722_1727266_-\|ATP-dependent-Clp-protease-ATP-binding-subunit	unknown	unknown	gnl\|CDD\|274529
NZ_CP015406.2\|WP_065534618.1\|1733444_1734308_-\|class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|224017
NZ_CP015406.2\|WP_065534619.1\|1735524_1736556_-\|type-I-C-CRISPR-associated-endonuclease-Cas1	cas1	cd09721_cas1_CAS-I-C	gnl\|CDD\|188360
NZ_CP015406.2\|WP_009257014.1\|1735226_1735517_-\|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187856
NZ_CP015406.2\|WP_065534613.1\|1727345_1727885_-\|CDP-diacylglycerol--glycerol-3-phosphate-3-phosphatidyltransferase	unknown	unknown	gnl\|CDD\|273139
NZ_CP015406.2\|WP_065534617.1\|1732574_1733429_-\|energy-coupling-factor-transporter-ATPase	unknown	unknown	gnl\|CDD\|275313
NZ_CP015406.2\|WP_084461958.1\|1743696_1744191_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|182510
NZ_CP015406.2\|WP_065534625.1\|1744283_1745087_-\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|238045
NZ_CP015406.2\|WP_065534620.1\|1737211_1738108_-\|type-I-C-CRISPR-associated-protein-Cas7/Csd2	cas7	cd09689_cas7_CAS-I-C	gnl\|CDD\|377458
NZ_CP015406.2\|WP_065534621.1\|1738109_1739903_-\|type-I-C-CRISPR-associated-protein-Cas8c/Csd1	cas8c	cd09757_cas8c_CAS-I-C	gnl\|CDD\|378245
NZ_CP015406.2\|WP_065534614.1\|1728641_1729841_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP015406.2\|WP_084461957.1\|1731636_1732536_-\|energy-coupling-factor-transporter-ATPase	unknown	unknown	gnl\|CDD\|275314
NZ_CP015406.2\|WP_065534622.1\|1739899_1740562_-\|type-I-C-CRISPR-associated-protein-Cas5	cas5	cd09651_cas5_CAS-I-C	gnl\|CDD\|187782
NZ_CP015406.2\|WP_065534615.1\|1730045_1730795_-\|tRNA-pseudouridine(38-40)-synthase-TruA	unknown	unknown	gnl\|CDD\|234577
NZ_CP015406.2\|WP_065534611.1\|1724045_1724681_+\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|366102
NZ_CP015406.2\|WP_065534624.1\|1742943_1743666_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|224117
NZ_CP015406.2\|WP_065534623.1\|1740583_1742713_-\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|224124

Protein	Function_ID	Function_description	E-value
NZ_CP015406.2\|WP_021631007.1\|1730823_1731636_-\|energy-coupling-factor-transporter-transmembrane-protein-EcfT	gnl\|CDD\|223692	COG0619, CbiQ, ABC-type cobalt transport system, permease component CbiQ and related transporters [Inorganic ion transport and metabolism].	2.11045e-49
NZ_CP015406.2\|WP_007489339.1\|1727922_1728624_-\|CvpA-family-protein	gnl\|CDD\|367140	pfam02674, Colicin_V, Colicin V production protein. Colicin V production protein is required in E. Coli for colicin V production from plasmid pColV-K30. This protein is coded for in the purF operon.	8.34401e-05
NZ_CP015406.2\|WP_007489327.1\|1736552_1737215_-\|CRISPR-associated-protein-Cas4	gnl\|CDD\|187768	cd09637, Cas4_I-A_I-B_I-C_I-D_II-B, CRISPR/Cas system-associated protein Cas4. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas4 is RecB-like nuclease with three-cysteine C-terminal cluster.	9.30143e-38
NZ_CP015406.2\|WP_065534612.1\|1724722_1727266_-\|ATP-dependent-Clp-protease-ATP-binding-subunit	gnl\|CDD\|274529	TIGR03346, chaperone_ClpB, ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins. [Protein fate, Protein folding and stabilization].	0
NZ_CP015406.2\|WP_065534618.1\|1733444_1734308_-\|class-I-SAM-dependent-methyltransferase	gnl\|CDD\|224017	COG1092, COG1092, Predicted SAM-dependent methyltransferases [General function prediction only].	1.11947e-40
NZ_CP015406.2\|WP_065534619.1\|1735524_1736556_-\|type-I-C-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|188360	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the DVULG subtype of CRISPR/Cas system.	1.27023e-178
NZ_CP015406.2\|WP_009257014.1\|1735226_1735517_-\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	3.43517e-31
NZ_CP015406.2\|WP_065534613.1\|1727345_1727885_-\|CDP-diacylglycerol--glycerol-3-phosphate-3-phosphatidyltransferase	gnl\|CDD\|273139	TIGR00560, pgsA, CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase. Alternate names: phosphatidylglycerophosphate synthase; glycerophosphate phosphatidyltransferase; PGP synthase. A number of related enzymes are quite similar in both sequence and catalytic activity, including Saccharamyces cerevisiae YDL142c, now known to be a cardiolipin synthase. There may be problems with incorrect transitive annotation of near homologs as authentic CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase. [Fatty acid and phospholipid metabolism, Biosynthesis].	7.24344e-24
NZ_CP015406.2\|WP_065534617.1\|1732574_1733429_-\|energy-coupling-factor-transporter-ATPase	gnl\|CDD\|275313	TIGR04520, ECF_ATPase_1, energy-coupling factor transporter ATPase. Members of this family are ATP-binding cassette (ABC) proteins by homology, but belong to energy coupling factor (ECF) transport systems. The architecture in general is two ATPase subunits (or a double-length fusion protein), a T component, and a substrate capture (S) component that is highly variable, and may be interchangeable in genomes with only one T component. This model identifies many but not examples of the upstream member of the pair of ECF ATPases in Firmicutes and Mollicutes. [Transport and binding proteins, Unknown substrate].	6.78911e-168
NZ_CP015406.2\|WP_084461958.1\|1743696_1744191_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|182510	PRK10514, PRK10514, putative acetyltransferase; Provisional.	7.85434e-42
NZ_CP015406.2\|WP_065534625.1\|1744283_1745087_-\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	1.44035e-14
NZ_CP015406.2\|WP_065534620.1\|1737211_1738108_-\|type-I-C-CRISPR-associated-protein-Cas7/Csd2	gnl\|CDD\|377458	pfam05107, Cas_Cas7, CRISPR-associated protein Cas7. CRISPR-associated protein Cas7 is one of the components of the type I-B cascade-like antiviral defense complex. In Haloferax volcanii, Cas5, Cas6 and Cas7 form a small complex that aids the stability of CRISPR-derived RNA.	1.38049e-152
NZ_CP015406.2\|WP_065534621.1\|1738109_1739903_-\|type-I-C-CRISPR-associated-protein-Cas8c/Csd1	gnl\|CDD\|378245	pfam09709, Cas_Csd1, CRISPR-associated protein (Cas_Csd1). CRISPR loci appear to be mobile elements with a wide host range. This entry represents proteins that tend to be found near CRISPR repeats. The species range, so far, is exclusively bacterial and mesophilic, although CRISPR loci are particularly common among the archaea and thermophilic bacteria. Clusters of short DNA repeats with nonhomologous spacers, which are found at regular intervals in the genomes of phylogenetically distinct prokaryotic species, comprise a family with recognisable features. This family is known as CRISPR (short for Clustered, Regularly Interspaced Short Palindromic Repeats). A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins.	0
NZ_CP015406.2\|WP_084461957.1\|1731636_1732536_-\|energy-coupling-factor-transporter-ATPase	gnl\|CDD\|275314	TIGR04521, ECF_ATPase_2, energy-coupling factor transporter ATPase. Members of this family are ATP-binding cassette (ABC) proteins by homology, but belong to energy coupling factor (ECF) transport systems. The architecture in general is two ATPase subunits (or a double-length fusion protein), a T component, and a substrate capture (S) component that is highly variable, and may be interchangeable in genomes with only one T component. This model identifies many but not examples of the downstream member of the pair of ECF ATPases in Firmicutes and Mollicutes. [Transport and binding proteins, Unknown substrate].	1.20102e-159
NZ_CP015406.2\|WP_065534622.1\|1739899_1740562_-\|type-I-C-CRISPR-associated-protein-Cas5	gnl\|CDD\|187782	cd09651, Cas5_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex; in subtype I-C this protein might be the endoribonuclease that generates crRNAs; also known as DevS family.	4.39788e-96
NZ_CP015406.2\|WP_065534615.1\|1730045_1730795_-\|tRNA-pseudouridine(38-40)-synthase-TruA	gnl\|CDD\|234577	PRK00021, truA, tRNA pseudouridine(38-40) synthase TruA.	4.72615e-109
NZ_CP015406.2\|WP_065534611.1\|1724045_1724681_+\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|366102	pfam00440, TetR_N, Bacterial regulatory proteins, tetR family.	3.27808e-16
NZ_CP015406.2\|WP_065534624.1\|1742943_1743666_+\|hypothetical-protein	gnl\|CDD\|224117	COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning].	2.37908e-07
NZ_CP015406.2\|WP_065534623.1\|1740583_1742713_-\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	3.54707e-57

>NZ_CP015406.2|WP_065534618.1|1733444_1734308_-|class-I-SAM-dependent-methyltransferase
MWISTDWKDYELLDCGGGERLERWGKYLLVRPDPQAIWRPEGRHPGWRRHDARYQRASTGGGQWVKKELPQRWTLGYKGLTLNIKPMNFKHTGVFPEQAANWDFAMERIRSAGRPIRVLNLFAYTGAASVACAAAGAAVCHVDAAKGMVSWARENAASSGLSDAPIRWIVDDCAKFVEREIRRGRRYDAVIMDPPSYGRGPSGEIWKLEENLFPFVELVTGVLSDEPLFFLINSYTTGLAPSVLTYLLETLVARRYGGRTESQELGLPVTATGLALPCGATGRWTAE
>NZ_CP015406.2|WP_065534617.1|1732574_1733429_-|energy-coupling-factor-transporter-ATPase
MNHAIIQTEGLRFAYAEEGAVNPLVLDGVSLDIEEGSFVAVLGHNGSGKSTLAKHLNAILLPSGGKVYVDGIDTADEDKLLDIRRTVGMVFQNPDNQIVANVVEEDVAFAPENLGVPPAEIRRRVDDALKAVGMYEYREHAPHLLSGGQKQRVAIAGVIAMAPRCIVLDEPTAMLDPIGRAEVMKTIRELNRSSGVTVVLITHHMDEAAQADRLVVMAKGRVVADGAPREVFQRVEELKAVGLTVPETTELLWQLRQAGVDVPLDALSDEECAQALFDLLQTRA
>NZ_CP015406.2|WP_084461957.1|1731636_1732536_-|energy-coupling-factor-transporter-ATPase
MEPIIQTERLSHIYSAGTPFEHGALVDVDFTAYRGEYLGIIGHTGSGKSTLIQHLNGLLKPTSGRVLFEGRDIWESKERTRQTRFQVGLVFQYPEYQLFEETIYKDIAFGPKNMGLDEREVDRRVREAAQFVGLREDMLEKSPFELSGGQKRRVAIAGVIAMEPSVLILDEPTAGLDPVGVASILGNIHDYHTAKNATIIIVSHSMEEVARTVDRLVVINDGRIPFSGAPREVFAHGDELEAMGLGVPAMTRVFHRLRAMGVDIDPSVYTTEQARDAVLAKLGHAGQQKQSASGERGAV
>NZ_CP015406.2|WP_021631007.1|1730823_1731636_-|energy-coupling-factor-transporter-transmembrane-protein-EcfT
MALKDITLGQYFPGNTLLHRLDPRTKLLFTVAYIVALFLAKQVVSYAILFVLLAVLIAVSKVGIRSILRGMKPILIIVIITGLLNLFYTRGKGAPLVSFWIFTIYPEGIWAAVFMVLRIAMLITCTFLLTYTTSPILLTDGLEKLMGPLKTLHVPVHELSMMMSIALRFIPTLIEETDKIMSAQKARGADFDTGNLLQKAKALVPLLVPLFISAFRRADELAIAMECRCYHGGEGRTRLRQLKLKGIDIAALVFAVLLCVGIGVLRHFGL
>NZ_CP015406.2|WP_065534615.1|1730045_1730795_-|tRNA-pseudouridine(38-40)-synthase-TruA
MRNIALRLMYVGTAYHGWQVQKNAVTVAETLEHSLASVVGHPVKCTGAGRTDAGVHAETYIANFRTSSRIPCDRISLAVNTRLPDDIVVVKATEVPDGFNAIGSCLKKEYTYRICNSHIRNAFYVNRAWFYPKHLDETVMQRAASHFVGTHDFAAVRSVGTETRTTVRTVHYFNISRSGELIECRVCADGFLYNMVRAMVGTCVYAADGKFSPDDVPAILEGRNRTAAGPTVPAGGLYMTKLWYQEDVL
>NZ_CP015406.2|WP_065534614.1|1728641_1729841_-|hypothetical-protein
MEDINGSRPNAAPKPKKRPNHFVRFLAFLVTLALMVGAVALVANYDKLNFDFIKRWFSYRTLARNDSGQAESFHFVGDSSNAFAVVDGDLLVCSPNTIRLYSGSGQAFVDQAVSMTNPVVSTAGGTALVYDAGGRELFVYSGREEVFSLTQEDGQALLSADVNQNGWLAVTSQESGHKGSVTVYDNSYSPLVRFSLSNRFVMDAAVAPDNKSVALLTIGLTDGNFESRVDLYRLDRTEEETEPDWTCPVGNNAILDLRWTSSGIWALGESGLYIVSGDGALSGSYDYGGRYLKAFSLDGDGTASLLLGKYRAGSTAELLTINASGELAAALPVEEQVLSLSAAGRYVGVLTADRLDIYSQDLELYNTLNGTQNAQKVLQRSDGSAMLIDSTTARLYVPQ
>NZ_CP015406.2|WP_007489339.1|1727922_1728624_-|CvpA-family-protein
MAYLIADGLILAVLLLFALVGAHRGFILSLCGLLAVLVAFVGASFAARTLSPMVADALEPKFASAIEEQLNASIQQQVAEEGSAALSPDDVPLDGVLNALREMGFYETLINTVDKAVENGMTSVAASAAAAVAAAIAQSAAYLILFLLGFALILIAWKLISHALDLVARLPGLHFLNKTCGALFGLVQACVLLFVAAWLLQFFGHVLPESLVNQTHLLKFFMTTNPLSLLSGL
>NZ_CP015406.2|WP_065534613.1|1727345_1727885_-|CDP-diacylglycerol--glycerol-3-phosphate-3-phosphatidyltransferase
MSIPNLLSLLRLVLVPVFAVVFFQPAPDAHRWAVLIYLTAFLTDVADGWIARHFNQITKLGRILDPLADKLMTFTVIICITADGIIPLWAVVVFFLKELTMAIGGYLMYQKMGDVISSNWLGKTSTGVFFVVCAALVLFPAIPRPWATGLISFALALTLAALCSYIFQYRKALKKRKQA
>NZ_CP015406.2|WP_065534612.1|1724722_1727266_-|ATP-dependent-Clp-protease-ATP-binding-subunit
MQPTLCSRCHKNVAVIFIQKMEGGTTKSEGLCLKCAKEMGIKPVEDMMQKMGISDEDLEGLTNEMMSAFGGAEGMEGLMSAEEADEDEEDEGKTATFPFLNKLFGSAQSPQAQPPEREQPRAERGDKDKKGEKQPKRKFLENYCISLTQKAADGKLDRIIGRDEEIQRTIQILNRRQKNNPCLIGEPGVGKTAIAEGLAQKIYQRDVPYKLLDKEVYLLDLTALVAGTQFRGQFESRMKGLIEEIKKLGNIILVIDEVHNIVGAGDAEGSMNAANILKPALSRGEIQVIGATTLTEYRKYIEKDSALERRFQPVMVEEPSIDDSIRIIQGIAPYYEKYHFVSISPEMCRLAVTMSERYITDRFLPDKAIDLIDEACSDVNLHNKTLAREVEVKKELDALEKERENLMVEANDRDYKRQTTLKNNEQRQTEIRRELNKLTAEHDSLMGNPATTEALAANEQRQSNFRRELDNLAGEREKLLSNEGSSRDYERLASIKSREIQLQDELNKLEAQSAPPLTVEHLARVIELWTKIPASQIQEAEYERLAKLEDRLKEHLIGQDEAVHAVAAAVRRGRVGIASKRKPVSFIFVGSTGVGKTELVKRLAMDMFHSPESLIRLDMSEFMEKFAVSRIIGSPPGYVGYDEAGQLTEKVRRKPYCVILFDEIEKAHPDVLNILLQILDDGHITDAQGRNVNFENTVIVMTSNAGSDARTSAGSVGFGRTADQQGRERAMKALESFLRPEFINRVDEIVYFNKLTEDNFKAIAAIMLRELQDALKEKGITFTWDDALLDYLVKKSYSMTYGARNLRRQIQKDLEDDIATKLIDSYLHPIQSIHASADGEHPVLTAE
>NZ_CP015406.2|WP_065534611.1|1724045_1724681_+|TetR/AcrR-family-transcriptional-regulator
MSKKQALTEFHRGSILAAAERLFAEKGTEKTTMDDIAREAEYSKATLYVYFQSKEEIINAILLSGMVLLKKKIHEAIESHSDWYQAYDAVCRSIVRFYDENPTAYDAATGTMPLVQEADETQKGVADILRVSGEIDEELAAFLVRGAAEGAVRSQLPPMETVLLFWSALSGMVHTADMREGYIQKTIGLSREEFLQHGTRLLLASITKVNA
>NZ_CP015406.2|WP_009257014.1|1735226_1735517_-|CRISPR-associated-endonuclease-Cas2
MLVLITYDVNTADAAGRKRLRQIARQCVNYGQRVQNSVFECKLEPAQYKLLQAKLCAIMDPERDSLRFYSLGNRYEQKIEHFGCKQTYLPDEPLIL
>NZ_CP015406.2|WP_065534619.1|1735524_1736556_-|type-I-C-CRISPR-associated-endonuclease-Cas1
MRQLLNTLFVTSEDIYLSLDGENVVANREHQEAARYPLHTLSGIVSFSYPGASPALMGACAERGISLAFCTPRGRFLARIAGSTSGNVLLRRVQYRTADEPSASCRIARSMIFGKVYNARWSIERTRRDHGLRLDAASLTASASHLKELLPQIAAAASLEHLRGLEGAGAALYFGQFDQLILGEKPLFSYQSRSRRPPRDPVNALLSFVYSLLSHDCASALESVGLDSYVGFLHRDRPGRASLALDLMEELRPCMADRFVLTLINNRIVGRQDFDFLENGAVFLSDSGRRAVLKRWQERKKESLTHPYLQEKLSWGLVPYLQALLLARCLRGDLDAYPPFLWK
>NZ_CP015406.2|WP_007489327.1|1736552_1737215_-|CRISPR-associated-protein-Cas4
MNFREEEFLPLSGLQHFAFCRRQWALIHLEQQWQENLRTIEGQLFHERAHDASLRERRGDTLVLRSLAVASPTLGLSGQCDVVEFRAAPEGVPLAGEEGRWLPFPVEYKRGRPKPHQADELQLCAQAMCLEEMLCCPVPEGALYYGETRRRTPVRFSPELRRQVQSAAEEMHQLFRRGHTPKARPGKFCGACSLKELCLPQLIRRESVSDYLNRAMEETP
>NZ_CP015406.2|WP_065534620.1|1737211_1738108_-|type-I-C-CRISPR-associated-protein-Cas7/Csd2
MSEPIKNRYEFVILFDVENGNPNGDPDAGNMPRVDPETGLGIVTDVCLKRKIRNYVETVKEDATGYRIYVKDGVPLNRSDAEAYAALDVDEKTVKEKKKADPDLARKVRDWMCANFYDVRTFGAVMTTFVKAALNCGQVRGPVQLGFARSVEPVIPQEITITRVAITTEADAEKKGTEMGRKYVIPYGLYRCEGYVSANLARKTTGFSEEDLSLLWEAILNMFEHDHSAARGKMAVRELIVFQHDNELGCAPAWKLFEAVHVTRRDPGDPAPARSYQDYSVTVDEAALPAGITCRRMG
>NZ_CP015406.2|WP_065534621.1|1738109_1739903_-|type-I-C-CRISPR-associated-protein-Cas8c/Csd1
MILQALTQYYETLVQAGVLAGPGWGPVKASYALSIAAEGTLEQVTSIQTEQLRGKKTVLAPQVLTLPAPVKRTVGIAANFLCDNSGYILGADNKGNPQRSLACFAACKALHTSVLEGVDSPSAQALLAFFRTWSPAYTLEHPALAEYREDILSGANLLFRYNGSYIHEDPEIRRAWERHYRADTDGPRGICLVTGEEGPVESVHPAIKNVSGAQSSGAALVSFNAPAFCSYGKEQNLNAPIGKYAAFAYTAALNYLLADREHVYRLGDATVVCWARGGGDAYQAFFGGALLGAPTPYSAADLRGMTAQLCQGIPLDFQEEKLDPNMDFYILGLSPNAARLSVRFFLHNTFRGFLEHIQSHYRRLEIIRPSYDKFETLPIWKLLDETVNQNARDKSPAPDLAGEVLRAVLNDTRYPATLLNGVALRIRAEREVTRGRAAILKAYYTKLAESTGREHPDIPEEVLQVSLNLGATNVPYLLGRLFSVLEAVQAAANPGINATIRDKYFSGAAATPATVFPVLVNLAQKHLKKLNAANRGLSIAYEKQMTELLSKLGTEYPAHLNLPQQGSFQLGYYFQTQARYQKKKKKKKKKKKKKEEK
>NZ_CP015406.2|WP_065534622.1|1739899_1740562_-|type-I-C-CRISPR-associated-protein-Cas5
MSIQLEVWGGYALFTRPEMKVERVSYDIMTPSAARGLVEAIYWHPGLRWIIDRIHVCAPIRFTNLRRNEVKSTLSARSARTVMERGKGELYLCTSDDIQQRAALLLRDVRYVIEAHFDITSQASPGDNPGKFQDIVKRRIKKGQFYHQPCFGCREFPAHFRWCEELPPCPKELLGERDLGWILYDMDYTNPEDIRPLFFRGTLRDGVLEVPAQESGEVRG
>NZ_CP015406.2|WP_065534623.1|1740583_1742713_-|CRISPR-associated-helicase/endonuclease-Cas3
MTYLAHIAGDGRKQTAAEHLNGTAERCALFAAPFGAEELGRLAGLSHDLGKYSMEFQRRLAGSPKVDHATAGAFACWRMGQPLAAFAAAGHHGGLPDGGTQGDSPDAGTFLGRMKRAERGALPDCSPWTEEITLPSPAPPPCGTEPLSQMFFTRMLFSCLTDADFLDTEAFMDGSSRPEHPAPLDDLWERLQRHISGWFPPQGELNSRRCAILEQCIRMGKTQPPGLFTLTVPTGGGKTVASLAFALAQARARGLRRIIYVIPYTSIIEQTAQEFRTILGAENVLEHHSNAAYEIDAEATPETVRLAQAAENWDMPVVVTTAVQFFESLYANRPSQCRKLHNLAGSVILFDEAQLLPLSCLRPCVHAIAQLVQHYGASAVLCTATQPALGPLFAEFLPGRPAVELCPPELCPPEPFRRVCFRQAGRLDWDTLSGQLQQHEQVLCVVNSRKSAQEIFTRLSGEGNFHLSTLMYPAHRRAKLEEIRRRLKEGLPCRVISTSLIEAGVDVDFPAVFREEAGLDSILQAAGRCNREGKRPVSESIVTLFRGEAAPPTLFQTAIGAGRMVLEQYDDIASREAIQAYFHTLLELKGAEAQDIYGILPKIRTELFPFQSVAERFHMIDSPTRTVYIPLGAGAELVGRLRAGERSRALFRQLGQYGVSIYENHFAALDQAGDLERLEDGSAILATLSLYSEETGLSLEADCGKGLFI
>NZ_CP015406.2|WP_065534624.1|1742943_1743666_+|hypothetical-protein
MSDTELQFRTSTFGGFQKQDVLNYIETSNQEHREKLEAVRRELAEAEAAKAAQAEEIAAAQAQTEAKEKELQALRGELAAAHKEAEERKLEISLLEEELEKAKQRLADTEARLKESEEKLAKAGPAAAAYEKVKDRTAGIELEAHCRAQAVQAEAEERIRKTRAEVEQWLNRVQGNYGRLRADMDAAVSRACGELDQVRQTLEQISGELARQDEGLDKLTKSCCAELTHRAPDPLPLDEK
>NZ_CP015406.2|WP_084461958.1|1743696_1744191_+|GNAT-family-N-acetyltransferase
MWQADVGNAIKWGEDTEIAEVKERQPALLQQLLKIWEQSVRATHHFLSSREIEQIKEYVLEALNLVPRLVIAREESGAPVGFMGIDGGRLEMLFLVPDKRGNGLGRLLVEYGMKHCGVKSVTVNEQNPEAKGFYEHMGFRVYKRTDCDEQGAPYPLLYMEISQR
>NZ_CP015406.2|WP_065534625.1|1744283_1745087_-|helix-turn-helix-transcriptional-regulator
MEFRERLYQLRKGRGISQEELAHTVGVSRQAVQKWEAGAATPDLGNLSALADYFAVSLDYLVRGIESEKPAAPSPQQAVIQNYYTGWSYEFRSRRTLLGLPLVHINLRDRGLCRAKGIIAIGNVATGFLAIGGFSAGLLSIGGLGVGLLTLGGLAVGIAAAGGLAAGLLLALGGGAFSLGLALGGCAVSQSVAIGGAAVGQYAAGGAALGSTLAIGQDAQSSSGGLALTLDQLRAYGGNTEALFQMIHAQLPEAPEWVVRLLLRIRP

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Crispr_ID: NZ_CP015406_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP015406_2

3486927-3487179

Orphan

Consensus_repeat	Method
CCCCGCTCATAGCAGTAGCCCAGGTTGCACTGGGCCAGGGAATACCCC	PILER-CR

2 spacers

The CRISPR arrays of NZ_CP015406_2

>merge|NZ_CP015406|2|3486927-3487179|PILER-CR
GCAGTAGCCCAGGTTACACTGGCCCACGGAGCTGCCCTGTTCGGCGGCCTGGCGGTACAGCTTCACGGCCCGGGCCTTGTCCTCCTTCACGCCCTTGCCGCTCTCGTAGCAGTAGCCCAGGTTGCACTGGGCGCGGGGATAGCCCTGCTCCGCCGCCCGCTCGTACCACTCCACGGCCTTGGCGGCGTCCTCCGCTACGCCCACGCCCCGGTCATAGAAGAAGCCCAGGTTGCACTGGGCCGGGGCATACCCC

>NZ_CP015406|2|2|3486927-3487179|PILER-CR
GCAGTAGCCCAGGTTACACTGGCCCACGGAGCTGCCCTGTTCGGCGGCCT	GGCGGTACAGCTTCACGGCCCGGGCCTTGTCCTCCTTCACGCCCTTGCCGCTCTCGTAGCAGTAGCC
CAGGTTGCACTGGGCGCGGGGATAGCCCTGCTCCGCCGCCCGCTCGTACC	ACTCCACGGCCTTGGCGGCGTCCTCCGCTACGCCCACGCCCCGGTCATAGAAGAAGCC
CAGGTTGCACTGGGCCGGGGCATACCCC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP015406.2\|WP_065535550.1\|3495728_3496004_+\|septum-formation-initiator-family-protein	unknown	unknown	gnl\|CDD\|368217
NZ_CP015406.2\|WP_065535551.1\|3496545_3496788_-\|RNA-binding-S4-domain-containing-protein	unknown	unknown	gnl\|CDD\|224109
NZ_CP015406.2\|WP_009257436.1\|3497612_3498401_-\|nucleoside-triphosphate-pyrophosphohydrolase	unknown	unknown	gnl\|CDD\|236569
NZ_CP015406.2\|WP_021633105.1\|3485990_3486554_+\|signal-peptidase-I	unknown	unknown	gnl\|CDD\|274044
NZ_CP015406.2\|WP_065535547.1\|3491221_3491713_-\|sigma-70-family-RNA-polymerase-sigma-factor	unknown	unknown	gnl\|CDD\|181835
NZ_CP015406.2\|WP_065535542.1\|3480150_3480396_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|378182
NZ_CP015406.2\|WP_009257441.1\|3494333_3494873_+\|biotin-transporter-BioY	unknown	unknown	gnl\|CDD\|376871
NZ_CP015406.2\|WP_065535543.1\|3480466_3480736_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP015406.2\|WP_065535545.1\|3483690_3484173_+\|cytidine-deaminase	unknown	unknown	gnl\|CDD\|225042
NZ_CP015406.2\|WP_065535825.1\|3476800_3478117_+\|L-seryl-tRNA(Sec)-selenium-transferase	unknown	unknown	gnl\|CDD\|235278
NZ_CP015406.2\|WP_007493719.1\|3497267_3497543_-\|HU-family-DNA-binding-protein	unknown	unknown	gnl\|CDD\|259853
NZ_CP015406.2\|WP_065535548.1\|3492007_3493096_-\|PTS-sugar-transporter-subunit-IIC	unknown	unknown	gnl\|CDD\|379113
NZ_CP015406.2\|WP_065535544.1\|3480806_3482642_-\|cation-translocating-P-type-ATPase	unknown	unknown	gnl\|CDD\|225127
NZ_CP015406.2\|WP_024725326.1\|3482727_3483003_-\|metal-sensing-transcriptional-repressor	unknown	unknown	gnl\|CDD\|197395
NZ_CP015406.2\|WP_009257438.1\|3496034_3496472_+\|S1-RNA-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|236305
NZ_CP015406.2\|WP_034565842.1\|3484385_3485930_+\|ribonuclease-Y	unknown	unknown	gnl\|CDD\|237177
NZ_CP015406.2\|WP_065535541.1\|3478113_3479661_+\|selenocysteine-specific-translation-elongation-factor	unknown	unknown	gnl\|CDD\|225815
NZ_CP015406.2\|WP_065535549.1\|3493205_3494198_-\|biotin--[acetyl-CoA-carboxylase]-ligase	unknown	unknown	gnl\|CDD\|237010
NZ_CP015406.2\|WP_007489963.1\|3483106_3483502_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|227225
NZ_CP015406.2\|WP_009257440.1\|3494943_3495234_+\|sporulation-protein-YabP	unknown	unknown	gnl\|CDD\|377934

Protein	Function_ID	Function_description	E-value
NZ_CP015406.2\|WP_065535550.1\|3495728_3496004_+\|septum-formation-initiator-family-protein	gnl\|CDD\|368217	pfam04977, DivIC, Septum formation initiator. DivIC from B. subtilis is necessary for both vegetative and sporulation septum formation. These proteins are mainly composed of an amino terminal coiled-coil.	9.99927e-08
NZ_CP015406.2\|WP_065535551.1\|3496545_3496788_-\|RNA-binding-S4-domain-containing-protein	gnl\|CDD\|224109	COG1188, COG1188, Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) [Translation, ribosomal structure and biogenesis].	9.94803e-28
NZ_CP015406.2\|WP_009257436.1\|3497612_3498401_-\|nucleoside-triphosphate-pyrophosphohydrolase	gnl\|CDD\|236569	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed.	3.89182e-121
NZ_CP015406.2\|WP_021633105.1\|3485990_3486554_+\|signal-peptidase-I	gnl\|CDD\|274044	TIGR02227, Inactive_signal_peptidase_IA., signal peptidase I, bacterial type. This model represents signal peptidase I from most bacteria. Eukaryotic sequences are likely organellar. Several bacteria have multiple paralogs, but these represent isozymes of signal peptidase I. Virtually all known bacteria may be presumed to A related model finds a simlar protein in many archaea and a few bacteria, as well as a microsomal (endoplasmic reticulum) protein in eukaryotes. [Protein fate, Protein and peptide secretion and trafficking].	1.73021e-39
NZ_CP015406.2\|WP_065535547.1\|3491221_3491713_-\|sigma-70-family-RNA-polymerase-sigma-factor	gnl\|CDD\|181835	PRK09415, PRK09415, RNA polymerase factor sigma C; Reviewed.	1.36891e-28
NZ_CP015406.2\|WP_065535542.1\|3480150_3480396_+\|hypothetical-protein	gnl\|CDD\|378182	pfam09413, DUF2007, Putative prokaryotic signal transducing protein. This is a family of putative prokaryotic signal transducing proteins of Pii-type.	0.00954683
NZ_CP015406.2\|WP_009257441.1\|3494333_3494873_+\|biotin-transporter-BioY	gnl\|CDD\|376871	pfam02632, BioY, BioY family. A number of bacterial genes are involved in bioconversion of pimelate into dethiobiotin. BioY is a component of the BioMNY transport system involved in biotin uptake in prokaryotes.	2.46976e-33
NZ_CP015406.2\|WP_065535545.1\|3483690_3484173_+\|cytidine-deaminase	gnl\|CDD\|225042	COG2131, ComEB, Deoxycytidylate deaminase [Nucleotide transport and metabolism].	1.32848e-39
NZ_CP015406.2\|WP_065535825.1\|3476800_3478117_+\|L-seryl-tRNA(Sec)-selenium-transferase	gnl\|CDD\|235278	PRK04311, PRK04311, selenocysteine synthase; Provisional.	0
NZ_CP015406.2\|WP_007493719.1\|3497267_3497543_-\|HU-family-DNA-binding-protein	gnl\|CDD\|259853	cd13831, HU, histone-like DNA-binding protein HU. This subfamily includes HU and HU-like domains. HU is a conserved nucleoid-associated protein (NAP) which binds non-specifically to duplex DNA with a particular preference for targeting nicked and bent DNA. It is highly basic and contributes to chromosomal compaction and maintenance of negative supercoiling, thus often referred to as histone-like protein. HU can induce DNA bends, condense DNA in a fiber and also interact with single stranded DNA. It contains two homologous subunits, alpha and beta, typically forming homodimers (alpha-alpha and beta-beta), except in E. coli and other enterobacteria, which form heterodimers (alpha-beta). In E. coli, HU binds uniformly to the chromosome, with a preference for damaged or distorted DNA structures and can introduce negative supercoils into closed circular DNA in the presence of topoisomerase I. Anabaena HU (AHU) shows preference for A/T-rich region in the center of its DNA binding site.	1.31384e-41
NZ_CP015406.2\|WP_065535548.1\|3492007_3493096_-\|PTS-sugar-transporter-subunit-IIC	gnl\|CDD\|379113	pfam13303, PTS_EIIC_2, Phosphotransferase system, EIIC. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. The sugar-specific permease of the PTS consists of three domains (IIA, IIB and IIC). The IIC domain catalyzes the transfer of a phosphoryl group from IIB to the sugar substrate.	1.24793e-87
NZ_CP015406.2\|WP_065535544.1\|3480806_3482642_-\|cation-translocating-P-type-ATPase	gnl\|CDD\|225127	COG2217, ZntA, Cation transport ATPase [Inorganic ion transport and metabolism].	0
NZ_CP015406.2\|WP_024725326.1\|3482727_3483003_-\|metal-sensing-transcriptional-repressor	gnl\|CDD\|197395	cd10160, CsoR-like_DUF156_3, Uncharacterized family 3; belongs to a superfamily containing the transcriptional regulators CsoR (copper-sensitive operon repressor), RcnR, and FrmR, and related domains; this family was previously known as part of DUF156. Uncharacterized family 3, belonging to a larger superfamily that contains various transcriptional regulators that respond to different stressors such as Cu(I), Ni(I), sulfite, and formaldehyde, and includes CsoRs (copper-sensitive operon repressors). CsoRs form homotetramers (dimer of dimers). In Mycobacterium tuberculosis CsoR, within each dimer, two Cys residues on opposite subunits, along with a His residue, bind the Cu(I) ion (forming a triagonal S2N coordination complex, C-H-C). These residues are conserved in the majority of members of this superfamily, including this family; however, a conserved Tyr and a Glu residue that facilitate allosteric regulation of DNA binding for CsoRs are not conserved.	8.9888e-52
NZ_CP015406.2\|WP_009257438.1\|3496034_3496472_+\|S1-RNA-binding-domain-containing-protein	gnl\|CDD\|236305	PRK08582, PRK08582, RNA-binding protein S1.	1.18374e-45
NZ_CP015406.2\|WP_034565842.1\|3484385_3485930_+\|ribonuclease-Y	gnl\|CDD\|237177	PRK12704, PRK12704, phosphodiesterase; Provisional.	0
NZ_CP015406.2\|WP_065535541.1\|3478113_3479661_+\|selenocysteine-specific-translation-elongation-factor	gnl\|CDD\|225815	COG3276, SelB, Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis].	9.16551e-102
NZ_CP015406.2\|WP_065535549.1\|3493205_3494198_-\|biotin--[acetyl-CoA-carboxylase]-ligase	gnl\|CDD\|237010	PRK11886, PRK11886, bifunctional biotin--[acetyl-CoA-carboxylase] ligase/biotin operon repressor BirA.	1.08302e-73
NZ_CP015406.2\|WP_007489963.1\|3483106_3483502_-\|hypothetical-protein	gnl\|CDD\|227225	COG4888, COG4888, Uncharacterized Zn ribbon-containing protein [General function prediction only].	8.58016e-05
NZ_CP015406.2\|WP_009257440.1\|3494943_3495234_+\|sporulation-protein-YabP	gnl\|CDD\|377934	pfam07873, YabP, YabP family. This family of proteins is involved in spore coat assembly during the process of sporulation.	4.32244e-22

>NZ_CP015406.2|WP_021633105.1|3485990_3486554_+|signal-peptidase-I
MKKPKKEEKPLSGAQEAYEWLQILIVALVTIILVFTFVGRITPVVGESMLPTLHEGDVMLIRDIGYTDPQPGDIVVLTKEFDAARGPIVKRIIAVEGQTVDIDYQTGTVYVDGEALDEPYLNEPMEEPWYEDLTSVTVPEGSVFVMGDNRNHSNDSRDVTLGTVDTRYLLGKAEFICFPFSDFGRIG
>NZ_CP015406.2|WP_034565842.1|3484385_3485930_+|ribonuclease-Y
MQTVIACVITAVVALIIGIPIGIQIRKRTAEKEINSAEEEAKRIINESIKSAESKKREALVEAKEEILQARNEYEREVKERRADLQKQERRLQQKEENLDRKTENIEKKEDTLQRKLAELDEARDEVATVKKTQMEVLERISGFTAEEAKNYLINQLAEEVTHESAMKVREIEAQFKEEADTRAKEILSLAIQRCAADHVAEATVSVVPLPNDEMKGRIIGREGRNIRTLETMTGVDLIIDDTPEAITVSCFDPVRREIARIALEKLIQDGRIHPTRIEEMVEKAKREVDATIKAEGERAVFETNVHGLHPELIKLLGRMRYRTSYGQNVLNHSIEVSHLAGLIAAEIGADVTQAKRAGLLHDLGKSIDHEVEGSHVQIGVELARKYRENEDIVHAIEAHHNDVEPRTIVACIVQAADAISAARPGARRENLENYIKRLEKLEEVTSSFPGVEKSFAIQAGREVRIMVAPDKVSEDQMVLLARDIAKKIEEELEYPGQIKVNMIRETKVIEYAK
>NZ_CP015406.2|WP_065535545.1|3483690_3484173_+|cytidine-deaminase
MGRIDKENYYLDIAQTVAGRSTCLRRCYGAILVKSDEIISTGYNGAPRGRRNCVDLNYCTREALNIPSGERYELCRSVHAEANAIISAARSEALGATLYMACVEPDTGALIPGSTSCSMCRRLIINAGIERVVIRDTRTEYRVVEVADWVREDDSLPRSL
>NZ_CP015406.2|WP_007489963.1|3483106_3483502_-|hypothetical-protein
MVMNFIRKLMYGRYGSDQLSFFLLVVYIVLILLSGLPHLEVLSWLALAVLLWDLFRMFSRRIDRRRAENARFLALAGPAIRWLRMRRTIRRDKEHRYFKCPNCGQYLRVPRGKGKITVNCRNCGASFEERS
>NZ_CP015406.2|WP_024725326.1|3482727_3483003_-|metal-sensing-transcriptional-repressor
MRQCMDADNLHRRLKKIIGQLGAIDKMVDQDVPCEDMLMQINAAKSALHKVGQVVLEGHLNHCVRDGIEHGDADRTIAEFAKAIEHFSRMS
>NZ_CP015406.2|WP_065535544.1|3480806_3482642_-|cation-translocating-P-type-ATPase
MKRDITFLALGGGSLLLSFFAPAALPVNPAWLAILLCGAPIVREAAVGLFTRFDIKADVLVSLALLASVAIGEIFAAGEIAFIMQLGSLLEERTVAKARAGIEKLVRLTPRTARRVTAAGEESIPAEAVAVGDRLRVLPGETIPVDGVVRAGQTSVNQAVMTGESLPVDKGPGDEVFSGTVNQFGSFEMEAARVGEDSSIQRMIRLVQSADAGKAKIVGLADRWATWIVVAALASAALTWLLSGQVIRAVTILVVFCPCALVLATPTAIMAAIGNATRHSFLVREGDALERLAQVGKAAFDKTGTLTRGVPEVTAVRSLSPGVTEEQVYAWLARAELGSEHPLGKAVVRGWQAAGGGTPAPAEDFEALPGRGLRAVLDGHTVLAGSEALLEEAGAALPPAARAEAEGFLARGCTLIYLAVDGAPAGFCALADTVRGEAAAMLRALSAEGVSPVLLTGDNENAAAHIARTLSIREYRAGCLPEDKLNWIDRAQQAGVRICMVGDGINDAPALKRAFVGIAMGGVGSDIAMDAADIVLVNDRVEELPHLLALSRRMMTTIRLNLAFSMALNFVAIVLAMTGVLNPVVGALVHNAGSVLVILNSALLLKWRRKS
>NZ_CP015406.2|WP_065535543.1|3480466_3480736_+|hypothetical-protein
MSSIPLFARRKLYSTFNAQEVGQLRAALLGAGVEFVITQDSRPVGGFSGYGTSGPALHLGAGAAPFEYTVYVHKDDLALAESAIQGTVG
>NZ_CP015406.2|WP_065535542.1|3480150_3480396_+|hypothetical-protein
MSSIPFFARRRLCSTFNAQEVGQLRAALLGAGVEFVIQQDRQNGSFFGIGLQLVPPSVEYIIYVHEDDFELAQAALRGTLN
>NZ_CP015406.2|WP_065535541.1|3478113_3479661_+|selenocysteine-specific-translation-elongation-factor
MIFCTAGHVDHGKTALVRALTGVDTDRLAEERRRGLTIELGFAPLELPGVGRVSLVDVPGHAQFIPTMLSGCGGLDGAVFTVADDEGPMPQTAEHLDILSLLGLERGVIALTRADLASPAARAEAEARTRALTAGTFLEGAPRIFVSAVTGEGLEALRAALAAMARQAPPPPEGSPRLHVDRVFSVDGSGTVVTGTLTGGPLRRGDRVQLYPGEQTARVRGLQCHGVPAEALPAGVRAAVNLAGVRLRDVGRGDTLAAPGALTLTDRADVSLRVLPGAPFPVRTGSQLHFHHGARALVCRCILLGQDVLRPGEAGWAQLRFAQPVAAAPGDRFVARFFSPLATVGGGVLVDLAPPGKGRMRPERLARLAALAEGRPLLAAESPAAPAAAAAPAPSAEAEGELEALYLGYGLEPPPWARVEPRFAGRIREARRACRRLKERGVLLELSPGHLLHAGAVRVAEARLRGRFGSASFSLAQARDALGCSRRCALLLLEHWDASGVTRRQGEVRIFSTSA
>NZ_CP015406.2|WP_065535825.1|3476800_3478117_+|L-seryl-tRNA(Sec)-selenium-transferase
MRALPKMDLLLARPALAGSPLPYALRRQAARQVLDEYRAALRAGALSAVPGLDELEQSVLRRGAELARPALGRVINATGVVLHTNLGRAPLSPRAAAAVGEAARGYSNLEYDLSARRRGRRGAAVESLLCALTGAEAALVVNNNAAAVFLLLSALAAGRGVAISRGELVEIGGGFRVPDILARSGARLVEVGTTNKTRPADYAAALDAGEAQVLLKVHPSNFRVVGFTQAVSLPELGALARGRGVPLFCDLGSAAPGSPELAEAVAGADVCCFSGDKLLGGPQAGILLGKAEPLGRLRADPLSRALRPGKLALAALEATLLDWRDGRAVPVSAMLSAPPEELRRRAEALAEALSPLHPCTAVETQGEVGGGARPGESLPAWAAALEPAEALEAHLRAWRVPILGRIHRGKLLLDVRTLLPGDEAEIAAALAAWREERA
>NZ_CP015406.2|WP_065535547.1|3491221_3491713_-|sigma-70-family-RNA-polymerase-sigma-factor
MDGTRAEELVERYADAILRIGYTWLGDMDDAKDICQTVLIKLVEEGRRFPDLGQERAWVVRLSVNACKNWKKSAWFRRRAPLEEGLHLAAEAPEPEPEDGALLALVNGLPPKYRQVVYLRYYEEYEVHEIAALLGQSPALVSTHLARARAKLRERLEGSCCDG
>NZ_CP015406.2|WP_065535548.1|3492007_3493096_-|PTS-sugar-transporter-subunit-IIC
MGACSAFLKRKNIVLSAKRYGVDALGAMAQGLFCSLLIGTILDTLGKQLGIAFLVTVGGYASAMSGSAMAVAIGYALQAPPLVLFSLATVGYAANALGSVTLSGGKGAGGPLAVLFIAVIAAELGKAVSKETKIDILVTPLVTILAGVGLSALLAPAIGTAASAVGDVVKWATVLQPFWMGILVSVVIGVALTLPISSAAICAAIGLTGLAGGAAVAGCCANMVGFAVLSFRENRWGGLVSQGLGTSMLQMGNIVRNPRIWLPAILTSAITGPLATCLFRLEMNDPASAVASGMGTCGMVGPIGVYAGWVNDVAAGAKAAITSFDWAGLALICFVLPAVLCWLFGLFFRRIGWIKEGDLTLE
>NZ_CP015406.2|WP_065535549.1|3493205_3494198_-|biotin--[acetyl-CoA-carboxylase]-ligase
MLRDEVLALLKAREGKPLSGEEMSRALGVSRAAVWKAMESLRDEGYVISSAPRRGYALEGSPDRLSAGELAGALAGRRVGRALVCLETVDSTNNEVKRRALAGAADGLAVVAEQQTGGRGRRGRSFVSPAGQGLYLSVLLRPRCPLEEVSALTAWTAVAVCNAVERVCGVRPGIKWPNDVILDGRKLCGILTELELEAETAALRHVVVGVGINLTQTAADFGPEVAPVAVSLAQSLGRAPRRAEMAAAVLAALDELYAAFPAERAAWLERYRADCLTLGRTVRLLRAGGEEEAFAEAVDDTFALVVRRADGSREAVSSGEVSVRGLLGYV
>NZ_CP015406.2|WP_009257441.1|3494333_3494873_+|biotin-transporter-BioY
MKTRELAYTGILAALIAVCSWISIPTAVPFTLQTFAVFLTLGLLGGRLGTLAVTVYLLLGAVGLPVFAGFHGGLGAFLGATGGYLVGFLFTALTMWGAERWLGKSAPVFLGSAVVGQILCYLFGSVWYYAVYTSSSGPVGMFTVLGWCVFPFLLPDAVKLALAWLLSRRLAPALRISRR
>NZ_CP015406.2|WP_009257440.1|3494943_3495234_+|sporulation-protein-YabP
MPYEENRPRAEAAHHIILEEREQLSVSGVEEVESFDENTIVMLTNRGTLIVRGEELHIEKLSLDGGDLKVEGTIDSLTYEDSGRDRAGGLFARLFR
>NZ_CP015406.2|WP_065535550.1|3495728_3496004_+|septum-formation-initiator-family-protein
MKTKKASLLTKLVVLALLIGTATGLLNLRQQILTAQSDLAEAEAQVAAQKQVNADLSDAVENSDDPDRQADIARGKLGLVEPGEYIFRFTD
>NZ_CP015406.2|WP_009257438.1|3496034_3496472_+|S1-RNA-binding-domain-containing-protein
MEFGVGSVLEGKVTGITKFGAFVSLPEGKSGLVHISEIAYSYVNDVKDHLKEGQEVKVKVIGIDENGRINLSIKKAMDPPPRPAGQGRPMGRPGGHTGGGFRGKPAPAEPASFEDRLKQFMAASDSKLSELRQSERRSSRRGGRK
>NZ_CP015406.2|WP_065535551.1|3496545_3496788_-|RNA-binding-S4-domain-containing-protein
MRLDKWLKVSRLIKRRTVANESCDNARVTANGRPVKASYDVKAGDVLELRFGERTVKVEVLSVAEHVGKADAPALYKELL
>NZ_CP015406.2|WP_007493719.1|3497267_3497543_-|HU-family-DNA-binding-protein
MNKAELINAAAEKAGLSKKDTETAINAAIEVISDCLAEGDKVQLVGFGAFEVKSRAERIGRNPKTKESIKIPASKVPVFKPGKALKDIVAK
>NZ_CP015406.2|WP_009257436.1|3497612_3498401_-|nucleoside-triphosphate-pyrophosphohydrolase
MVDFQYKDSYGVKDLEEIVRLLRAPGGCPWDAEQTHQSIRRNFLEEAYEAVEAIDEGSPEHLKEELGDVLLQVVFHALMEQEAGRFDLDAVADGICKKLIFRHPHVFGEVSVSGTGEVLSNWEELKRKEKGQATNTDALEAVARSLPALWRAEKVQKKAKKAGFDWPDVSGALDKLSEELEELKTAVAEGTNVEEELGDLLFSAVNVSRFVKVDTEEALNGATDKFIGRFRKVEEEAARQGRALEGMSLAELDKLWEHAKET

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_CP015406_1	1.8\|1734988\|35\|NZ_CP015406\|CRISPRCasFinder,CRT,PILER-CR	1734988-1735022	35	NZ_CP015406.2	2266841-2266875	0	1.0

1. spacer 1.8|1734988|35|NZ_CP015406|CRISPRCasFinder,CRT,PILER-CR matches to position: 2266841-2266875, mismatch: 0, identity: 1.0

cagtgccggcggtggtgtgcggctacaagctgggg	CRISPR spacer
cagtgccggcggtggtgtgcggctacaagctgggg	Protospacer
***********************************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP015406_1	1.8\|1734988\|35\|NZ_CP015406\|CRISPRCasFinder,CRT,PILER-CR	1734988-1735022	35	NZ_CP042263	Litoreibacter sp. LN3S51 plasmid unnamed2, complete sequence	174463-174497	7	0.8
NZ_CP015406_1	1.4\|1734720\|34\|NZ_CP015406\|CRISPRCasFinder,CRT,PILER-CR	1734720-1734753	34	NZ_CP040822	Paraoceanicella profunda strain D4M1 plasmid pD4M1D, complete sequence	57358-57391	8	0.765
NZ_CP015406_1	1.4\|1734720\|34\|NZ_CP015406\|CRISPRCasFinder,CRT,PILER-CR	1734720-1734753	34	NZ_CP018233	Rhizobium leguminosarum strain Vaf-108 plasmid unnamed5, complete sequence	169008-169041	10	0.706
NZ_CP015406_1	1.4\|1734720\|34\|NZ_CP015406\|CRISPRCasFinder,CRT,PILER-CR	1734720-1734753	34	NZ_CP022569	Rhizobium leguminosarum bv. viciae strain BIHB 1148 plasmid pSK05, complete sequence	113941-113974	10	0.706
NZ_CP015406_1	1.4\|1734720\|34\|NZ_CP015406\|CRISPRCasFinder,CRT,PILER-CR	1734720-1734753	34	NZ_CP030772	Streptomyces sp. YIM 121038 plasmid pSSP121038, complete sequence	111681-111714	11	0.676

1. spacer 1.8|1734988|35|NZ_CP015406|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP042263 (Litoreibacter sp. LN3S51 plasmid unnamed2, complete sequence) position: , mismatch: 7, identity: 0.8

-cagtgccggcggtggtgtgcggctacaagctgggg	CRISPR spacer
gcggcg-cggcggtggtgtgtggctacatgctgttg	Protospacer
 *.*.* *************.******* ****  *

2. spacer 1.4|1734720|34|NZ_CP015406|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP040822 (Paraoceanicella profunda strain D4M1 plasmid pD4M1D, complete sequence) position: , mismatch: 8, identity: 0.765

agttccaccgcttccccggcctcctg--cccggccg	CRISPR spacer
ctctccaccgcctcctcggcctcctgcacccggt--	Protospacer
  .********.***.**********  *****.

3. spacer 1.4|1734720|34|NZ_CP015406|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP018233 (Rhizobium leguminosarum strain Vaf-108 plasmid unnamed5, complete sequence) position: , mismatch: 10, identity: 0.706

agttccaccgcttccccggcctcctgcccggccg	CRISPR spacer
cggacagccgcgtccccggcctcctgcctggggc	Protospacer
 *  * .**** ****************.**

4. spacer 1.4|1734720|34|NZ_CP015406|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP022569 (Rhizobium leguminosarum bv. viciae strain BIHB 1148 plasmid pSK05, complete sequence) position: , mismatch: 10, identity: 0.706

agttccaccgcttccccggcctcctgcccggccg	CRISPR spacer
cggacagccgcgtccccggcctcctgcctggggc	Protospacer
 *  * .**** ****************.**

5. spacer 1.4|1734720|34|NZ_CP015406|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP030772 (Streptomyces sp. YIM 121038 plasmid pSSP121038, complete sequence) position: , mismatch: 11, identity: 0.676

agttccaccgcttccccggcctcctgcccggccg	CRISPR spacer
gaccgtctcacttccacggcctcctgaccggccg	Protospacer
.... . .*.***** ********** *******

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

785519 : 811896

unidentified_phage(23.08%)

capsid,integrase,tail,head,terminase,portal

attL 780776:780799|attR 810374:810397

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
780776:780799	attL	NA	NA	NA	NA
WP_065534068.1\|785519_786548_-\|integrase	site-specific integrase	H7BVF7	unidentified_phage	2.1e-27	28.7
WP_065534069.1\|786560_786812_-	hypothetical protein	NA	NA	NA	NA
WP_084461895.1\|786929_787172_-	helix-turn-helix domain-containing protein	A0A0A0YV45	Streptococcus_phage	5.3e-06	42.9
WP_080568005.1\|787229_787457_-	helix-turn-helix transcriptional regulator	S5MA03	Brevibacillus_phage	6.5e-06	42.3
WP_065534070.1\|787855_788551_-	NYN domain-containing protein	A4JWQ6	Burkholderia_virus	1.6e-42	43.6
WP_065534071.1\|788796_789057_-	Txe/YoeB family addiction module toxin	NA	NA	NA	NA
WP_065534072.1\|789049_789307_-	type II toxin-antitoxin system RelB/DinJ family antitoxin	NA	NA	NA	NA
WP_065534073.1\|789475_790114_+	ImmA/IrrE family metallo-endopeptidase	NA	NA	NA	NA
WP_157781239.1\|790442_790757_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_050001803.1\|790973_791294_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_065534075.1\|791469_791790_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_065534076.1\|792083_792590_-	hypothetical protein	NA	NA	NA	NA
WP_089413487.1\|792937_793138_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_065534078.1\|793231_793624_-	hypothetical protein	NA	NA	NA	NA
WP_065534079.1\|793750_793954_+	hypothetical protein	NA	NA	NA	NA
WP_084461897.1\|793958_794462_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_065534081.1\|794458_794800_+	hypothetical protein	NA	NA	NA	NA
WP_065534082.1\|794796_795057_+	hypothetical protein	NA	NA	NA	NA
WP_021631304.1\|795050_795305_+	hypothetical protein	NA	NA	NA	NA
WP_021631303.1\|795366_796155_+	helix-turn-helix domain-containing protein	A0A075KJL8	Lactobacillus_phage	8.5e-21	53.5
WP_065534083.1\|796141_797539_+	AAA family ATPase	Q9MC54	Pseudomonas_phage	1.5e-47	32.7
WP_009261056.1\|797659_797845_+	hypothetical protein	NA	NA	NA	NA
WP_065534084.1\|797863_798634_+	ParA family protein	H7BUL8	unidentified_phage	1.8e-31	33.7
WP_065534085.1\|798633_800184_+	ParB N-terminal domain-containing protein	H7BUL7	unidentified_phage	2.2e-12	28.8
WP_007488437.1\|800170_800593_+	hypothetical protein	NA	NA	NA	NA
WP_065534086.1\|800585_800789_+	hypothetical protein	NA	NA	NA	NA
WP_065534087.1\|800813_801038_+	hypothetical protein	NA	NA	NA	NA
WP_065534088.1\|801034_801262_+	hypothetical protein	NA	NA	NA	NA
WP_065534090.1\|801490_801790_+	hypothetical protein	NA	NA	NA	NA
WP_089413488.1\|802228_802453_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_065534092.1\|802704_803052_-	hypothetical protein	NA	NA	NA	NA
WP_065534093.1\|803163_803616_+	hypothetical protein	NA	NA	NA	NA
WP_065534094.1\|803799_804006_+	hypothetical protein	NA	NA	NA	NA
WP_065534095.1\|804005_804773_+	hypothetical protein	NA	NA	NA	NA
WP_084461899.1\|804811_805012_+	hypothetical protein	NA	NA	NA	NA
WP_065534096.1\|805081_805450_+	HNH endonuclease	A0A218MNA6	uncultured_virus	1.1e-15	43.6
WP_065534097.1\|805742_806252_+\|terminase	phage terminase small subunit P27 family	Q9ZXG2	Bacillus_phage	1.2e-15	33.8
WP_065534098.1\|806248_808066_+\|terminase	terminase	A0A2I7SBY8	Paenibacillus_phage	1.2e-118	43.2
WP_065534099.1\|808090_808270_+	hypothetical protein	NA	NA	NA	NA
WP_065534100.1\|808266_809622_+\|portal	phage portal protein	A0A2K5B287	Erysipelothrix_phage	1.3e-48	33.2
WP_065534101.1\|809638_810331_+	hypothetical protein	NA	NA	NA	NA
WP_065534102.1\|810327_811554_+\|capsid	phage major capsid protein	Q9ZXF6	Bacillus_phage	6.3e-39	28.6
810374:810397	attR	NA	NA	NA	NA
WP_065534103.1\|811557_811896_+\|head,tail	phage gp6-like head-tail connector protein	NA	NA	NA	NA

DBSCAN-SWA_2

972612 : 1045359

Paenibacillus_phage(28.57%)

holin,transposase,capsid,protease,head,portal,tail,plate,terminase,integrase

attL 986144:986157|attR 1011196:1011209

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_157781240.1\|972612_974097_+\|transposase	IS1182 family transposase	A0A1X9I5T2	Streptococcus_phage	3.0e-107	45.5
WP_084461912.1\|974396_975590_-	S8/S53 family peptidase	NA	NA	NA	NA
WP_065534196.1\|976302_978348_-	serine hydrolase	G1BRK9	Mycobacterium_phage	7.1e-11	30.3
WP_065534197.1\|978472_979180_-	hypothetical protein	NA	NA	NA	NA
WP_065534198.1\|979233_980523_-	recombinase family protein	A0A1L2BY67	Clostridium_phage	4.0e-68	39.3
WP_065534199.1\|980658_981027_+	BlaI/MecI/CopY family transcriptional regulator	NA	NA	NA	NA
WP_065534200.1\|981019_983941_+	peptidase M56	NA	NA	NA	NA
WP_065534201.1\|983997_984246_-	TIGR03905 family TSCPD domain-containing protein	NA	NA	NA	NA
WP_007492539.1\|984346_984934_+	TetR/AcrR family transcriptional regulator C-terminal domain-containing protein	NA	NA	NA	NA
WP_009260263.1\|985019_986303_+	cation:proton antiporter	NA	NA	NA	NA
986144:986157	attL	NA	NA	NA	NA
WP_084461914.1\|986307_987930_-	ferrous iron transporter B	NA	NA	NA	NA
WP_065534202.1\|987920_988163_-	ferrous iron transport protein A	NA	NA	NA	NA
WP_007492546.1\|988268_988706_+	DNA-binding protein	NA	NA	NA	NA
WP_065534203.1\|988692_989343_+	C40 family peptidase	NA	NA	NA	NA
WP_065534204.1\|989453_990812_+	MATE family efflux transporter	NA	NA	NA	NA
WP_157781241.1\|991096_991234_+	hypothetical protein	NA	NA	NA	NA
WP_084461915.1\|991612_992020_+	hypothetical protein	NA	NA	NA	NA
WP_065534206.1\|992066_995705_-	S-layer homology domain-containing protein	NA	NA	NA	NA
WP_065534207.1\|996008_996296_+	XRE family transcriptional regulator	NA	NA	NA	NA
WP_065534208.1\|996285_997536_+\|terminase	PBSX family phage terminase large subunit	E5DV50	Deep-sea_thermophilic_phage	1.7e-108	47.4
WP_065534209.1\|997572_998733_+	serine/threonine protein phosphatase	NA	NA	NA	NA
WP_065534210.1\|999751_1000612_+	hypothetical protein	NA	NA	NA	NA
WP_065534211.1\|1000656_1001007_+	hypothetical protein	NA	NA	NA	NA
WP_065534212.1\|1001026_1002061_+\|capsid	phage major capsid protein	NA	NA	NA	NA
WP_065534213.1\|1002057_1002408_+	hypothetical protein	NA	NA	NA	NA
WP_065534214.1\|1002404_1002752_+	hypothetical protein	NA	NA	NA	NA
WP_065534215.1\|1002764_1003253_+	hypothetical protein	NA	NA	NA	NA
WP_065534216.1\|1003249_1004284_+\|tail	phage tail sheath subtilisin-like domain-containing protein	NA	NA	NA	NA
WP_007492097.1\|1004303_1004693_+	hypothetical protein	NA	NA	NA	NA
WP_009258872.1\|1004694_1005105_+	hypothetical protein	NA	NA	NA	NA
WP_065534217.1\|1005101_1005311_+	molybdopterin oxidoreductase	NA	NA	NA	NA
WP_065534218.1\|1005307_1005868_+	hypothetical protein	NA	NA	NA	NA
WP_044941481.1\|1005879_1006437_+	LysM peptidoglycan-binding domain-containing protein	NA	NA	NA	NA
WP_065534219.1\|1006436_1007375_+	hypothetical protein	NA	NA	NA	NA
WP_065534220.1\|1007390_1007759_+	hypothetical protein	NA	NA	NA	NA
WP_065534221.1\|1007770_1008106_+	hypothetical protein	NA	NA	NA	NA
WP_084462085.1\|1008296_1009172_+\|plate	baseplate J/gp47 family protein	B5TK75	Pseudomonas_phage	5.0e-14	30.2
WP_009258863.1\|1009168_1009738_+	DUF2313 domain-containing protein	NA	NA	NA	NA
WP_065534222.1\|1009867_1011040_-\|integrase	site-specific integrase	A0A2R2ZGM9	Clostridioides_phage	1.9e-37	30.0
WP_065534223.1\|1011145_1011403_-	hypothetical protein	NA	NA	NA	NA
1011196:1011209	attR	NA	NA	NA	NA
WP_065534224.1\|1011442_1011961_-	hypothetical protein	A0A0K2CP90	Brevibacillus_phage	7.3e-05	37.7
WP_065534225.1\|1012076_1012505_-	ImmA/IrrE family metallo-endopeptidase	NA	NA	NA	NA
WP_065534226.1\|1012511_1012874_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_065534227.1\|1013073_1013307_+	XRE family transcriptional regulator	NA	NA	NA	NA
WP_065535737.1\|1013337_1014219_+	Rha family transcriptional regulator	A0A2H4J8K8	uncultured_Caudovirales_phage	7.7e-47	42.0
WP_065534228.1\|1014218_1014398_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_065534229.1\|1014394_1014646_+	hypothetical protein	NA	NA	NA	NA
WP_065534230.1\|1014642_1015164_+	hypothetical protein	NA	NA	NA	NA
WP_065534231.1\|1015175_1015484_+	hypothetical protein	NA	NA	NA	NA
WP_065534232.1\|1015480_1015756_+	hypothetical protein	NA	NA	NA	NA
WP_065534233.1\|1015752_1017033_+	AAA family ATPase	A0A0K2CZN2	Paenibacillus_phage	2.8e-114	69.7
WP_065534234.1\|1017033_1018110_+	ATP-binding protein	A0A0K2CZH1	Paenibacillus_phage	3.3e-100	50.8
WP_055178833.1\|1018182_1018704_+	hypothetical protein	A0A2I7SC41	Paenibacillus_phage	7.3e-29	42.9
WP_065534235.1\|1018703_1020299_+	DEAD/DEAH box helicase	A0A0K2CZF8	Paenibacillus_phage	2.1e-223	71.4
WP_065534236.1\|1020300_1022589_+	AAA family ATPase	A0A2I7SC35	Paenibacillus_phage	2.0e-256	56.9
WP_084461917.1\|1022836_1023292_+	RusA family crossover junction endodeoxyribonuclease	A0A2I7SC39	Paenibacillus_phage	2.8e-40	60.3
WP_065534237.1\|1023275_1023650_+	hypothetical protein	NA	NA	NA	NA
WP_065534238.1\|1023646_1023871_+	hypothetical protein	NA	NA	NA	NA
WP_065534239.1\|1023870_1024086_+	helix-turn-helix transcriptional regulator	D2XQ11	Bacillus_virus	2.3e-05	44.6
WP_157781242.1\|1025154_1025592_+\|terminase	P27 family phage terminase small subunit	NA	NA	NA	NA
WP_065534242.1\|1025584_1027258_+\|terminase	terminase	A0A2P1CCE7	Lactobacillus_phage	9.0e-145	49.1
WP_084461918.1\|1027287_1028511_+\|portal	phage portal protein	A0A075KK59	Lactobacillus_phage	3.0e-81	41.7
WP_065534244.1\|1028500_1029130_+\|head,protease	HK97 family phage prohead protease	A0A1C8EA63	Bacillus_phage	1.5e-39	51.5
WP_065534245.1\|1029132_1030296_+\|capsid	phage major capsid protein	F7V9A6	Lactobacillus_virus	6.1e-84	45.6
WP_044940002.1\|1030311_1030491_+	hypothetical protein	NA	NA	NA	NA
WP_084461919.1\|1030502_1030853_+\|head,tail	phage gp6-like head-tail connector protein	NA	NA	NA	NA
WP_065534246.1\|1030857_1031232_+\|head,tail	head-tail adaptor protein	NA	NA	NA	NA
WP_065534247.1\|1031228_1031594_+	hypothetical protein	NA	NA	NA	NA
WP_065534248.1\|1031574_1031997_+	hypothetical protein	NA	NA	NA	NA
WP_065534249.1\|1032008_1032587_+	hypothetical protein	NA	NA	NA	NA
WP_065534250.1\|1032588_1032978_+	hypothetical protein	NA	NA	NA	NA
WP_065534251.1\|1033111_1037497_+\|tail	phage tail tape measure protein	A3F654	Streptococcus_phage	1.2e-58	41.6
WP_065534252.1\|1037493_1037871_+	hypothetical protein	NA	NA	NA	NA
WP_065534253.1\|1037863_1040011_+	hypothetical protein	NA	NA	NA	NA
WP_157781243.1\|1040013_1040175_+	hypothetical protein	NA	NA	NA	NA
WP_065534254.1\|1040178_1041378_+	hypothetical protein	NA	NA	NA	NA
WP_157781244.1\|1041380_1042394_+	hypothetical protein	NA	NA	NA	NA
WP_089413489.1\|1042393_1042747_+	hypothetical protein	NA	NA	NA	NA
WP_065534257.1\|1042752_1042950_+	hypothetical protein	NA	NA	NA	NA
WP_065534258.1\|1042987_1043389_+	hypothetical protein	NA	NA	NA	NA
WP_065534259.1\|1043381_1044878_+	N-acetylmuramoyl-L-alanine amidase	Q9ZXD7	Bacillus_phage	7.5e-34	42.2
WP_065534260.1\|1044879_1045359_+\|holin	phage holin family protein	NA	NA	NA	NA

DBSCAN-SWA_3

2993524 : 3009895

Clostridium_phage(38.46%)

transposase,terminase,portal

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_065535268.1\|2993524_2995453_-	hypothetical protein	A0A2P1CG17	Microbacterium_phage	3.9e-75	62.4
WP_065535269.1\|2995648_2995873_-	hypothetical protein	NA	NA	NA	NA
WP_065535270.1\|2995914_2996283_-	hypothetical protein	B6CXF0	Clostridium_phage	7.5e-12	35.7
WP_065535271.1\|2996287_2996860_-	hypothetical protein	NA	NA	NA	NA
WP_065535272.1\|2996873_2997242_-	hypothetical protein	NA	NA	NA	NA
WP_065535273.1\|2997238_2997595_-	hypothetical protein	A0A1J1J9Q7	Escherichia_phage	2.0e-14	40.8
WP_084462020.1\|2997591_2997942_-	hypothetical protein	F8UBC2	Clostridium_phage	8.7e-18	42.5
WP_065535274.1\|2997938_2998361_-	hypothetical protein	F8UBC1	Clostridium_phage	1.4e-17	35.6
WP_084462021.1\|2998376_2998775_-	hypothetical protein	NA	NA	NA	NA
WP_065535276.1\|2998774_2999704_-	hypothetical protein	A0A097PAT5	Streptococcus_pyogenes_phage	6.5e-12	34.8
WP_065535277.1\|2999718_3000345_-	hypothetical protein	NA	NA	NA	NA
WP_167624384.1\|3000691_3001165_-	GIY-YIG nuclease family protein	NA	NA	NA	NA
WP_065535278.1\|3001122_3001332_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_084462022.1\|3002101_3002515_-	HK97 gp10 family phage protein	A0A1S5S8X0	Streptococcus_phage	5.1e-17	39.2
WP_065535279.1\|3002530_3002740_-	hypothetical protein	NA	NA	NA	NA
WP_065535280.1\|3002736_3004038_-	hypothetical protein	B6CXD5	Clostridium_phage	5.2e-39	36.9
WP_065535281.1\|3004024_3005422_-\|portal	phage portal protein	F8UBA8	Clostridium_phage	4.1e-58	33.7
WP_084462023.1\|3005426_3006623_-\|terminase	PBSX family phage terminase large subunit	A0A2K9V3G6	Faecalibacterium_phage	1.0e-126	56.6
WP_065535283.1\|3006609_3007059_-\|transposase	transposase	A5GYP7	Lactococcus_phage	2.2e-37	61.1
WP_084462024.1\|3007346_3007985_-	Bro-N domain-containing protein	A0A2R2ZGJ9	Clostridioides_phage	2.4e-42	60.0
WP_065535284.1\|3008564_3008780_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_065535285.1\|3008783_3008996_-	DUF551 domain-containing protein	NA	NA	NA	NA
WP_065535286.1\|3008988_3009216_-	hypothetical protein	NA	NA	NA	NA
WP_065535287.1\|3009212_3009452_-	Lar family restriction alleviation protein	NA	NA	NA	NA
WP_065535288.1\|3009448_3009895_-	hypothetical protein	A8ASP1	Listeria_phage	2.0e-11	31.4

DBSCAN-SWA_4

3013786 : 3018194

Paracoccus_phage(14.29%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_065535297.1\|3013786_3014134_-	DUF1064 domain-containing protein	A0A0U2C0S3	Paracoccus_phage	7.1e-12	42.5
WP_157781258.1\|3014126_3014276_-	hypothetical protein	NA	NA	NA	NA
WP_065535298.1\|3014262_3015531_-	AAA family ATPase	A0A0U4B0G9	Pseudomonas_phage	1.7e-26	32.7
WP_142988505.1\|3015475_3016141_-	hypothetical protein	A0A0F7L7L4	uncultured_marine_virus	4.7e-12	47.8
WP_065535299.1\|3016153_3016573_-	single-stranded DNA-binding protein	A0A1J0MFD7	Staphylococcus_phage	3.5e-21	41.5
WP_065535300.1\|3016861_3017203_-	hypothetical protein	I1TJY2	Clostridium_phage	3.3e-06	31.1
WP_065535301.1\|3017187_3017706_-	hypothetical protein	A0A0E3Y6D2	Fusobacterium_phage	2.5e-29	46.8
WP_065535302.1\|3017705_3018194_-	siphovirus Gp157 family protein	E5DV79	Deep-sea_thermophilic_phage	1.1e-10	30.7

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP015406

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection