CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP015402	Muribaculum intestinale strain YL27 chromosome, complete genome	4 crisprs	DEDDh,PD-DExK,cas3,RT,WYL,DinG	0	0	11	3

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP015402_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP015402_1

1002895-1003019

Orphan

Consensus_repeat	Method
TGGGGTCCGTCATGGTCATGGGGTTGGGG	CRISPRCasFinder

1 spacers

DEDDh

The CRISPR arrays of NZ_CP015402_1

>merge|NZ_CP015402|1|1002895-1003019|CRISPRCasFinder
TGGGGCCCGTCGTGGTCGTTCGGCTGGAACTCATGGTGGGGTCCGTCATGGTCATGGGGTTGGGGTCCTGGGTGGGGTCCCGGATGGGGACCTGCCTGGGGTCCGTCATGGTCATGGGGCTGGGG

>NZ_CP015402|1|1|1002895-1003019|CRISPRCasFinder
TGGGGCCCGTCGTGGTCGTTCGGCTGGAA	CTCATGGTGGGGTCCGTCATGGTCATGGGGTTGGGGTCCTGGGTGGGGTCCCGGATGGGGACCTGCC
TGGGGTCCGTCATGGTCATGGGGCTGGGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP015402.2\|WP_068960345.1\|1014135_1014561_-\|Holliday-junction-resolvase-RuvX	unknown	unknown	gnl\|CDD\|340815
NZ_CP015402.2\|WP_068960328.1\|993875_994742_+\|4-hydroxy-3-methylbut-2-enyl-diphosphate-reductase	unknown	unknown	gnl\|CDD\|234893
NZ_CP015402.2\|WP_084273962.1\|1014692_1014977_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|153229
NZ_CP015402.2\|WP_068960338.1\|1003551_1005234_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|224978
NZ_CP015402.2\|WP_068960330.1\|995255_995786_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP015402.2\|WP_068960327.1\|993174_993879_+\|(d)CMP-kinase	unknown	unknown	gnl\|CDD\|234579
NZ_CP015402.2\|WP_068960343.1\|1011850_1013536_-\|energy-dependent-translational-throttle-protein-EttA	unknown	unknown	gnl\|CDD\|236992
NZ_CP015402.2\|WP_068960339.1\|1006911_1007709_-\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|223730
NZ_CP015402.2\|WP_068960346.1\|1015243_1015654_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|334761
NZ_CP015402.2\|WP_068960342.1\|1010376_1011768_+\|asparagine--tRNA-ligase	unknown	unknown	gnl\|CDD\|235176
NZ_CP015402.2\|WP_068960340.1\|1007857_1008301_+\|transcriptional-repressor	unknown	unknown	gnl\|CDD\|223806
NZ_CP015402.2\|WP_068960344.1\|1013569_1014139_-\|peptide-deformylase	unknown	unknown	gnl\|CDD\|234668
NZ_CP015402.2\|WP_068960336.1\|1000800_1002090_+\|insulinase-family-protein	unknown	unknown	gnl\|CDD\|223685
NZ_CP015402.2\|WP_084274216.1\|998929_1000021_+\|flippase-like-domain-containing-protein	unknown	unknown	gnl\|CDD\|377103
NZ_CP015402.2\|WP_068960332.1\|996795_997620_+\|TatD-family-hydrolase	unknown	unknown	gnl\|CDD\|238635
NZ_CP015402.2\|WP_068960341.1\|1008733_1010287_+\|pseudouridine-synthase	unknown	unknown	gnl\|CDD\|224108
NZ_CP015402.2\|WP_068960326.1\|990908_992222_+\|sigma-54-dependent-Fis-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225114
NZ_CP015402.2\|WP_068960329.1\|994734_995259_+\|hypothetical-protein	DEDDh	cd06127_DEDDh_CAS-I	gnl\|CDD\|99834
NZ_CP015402.2\|WP_068960331.1\|995827_996796_+\|polyprenyl-synthetase-family-protein	unknown	unknown	gnl\|CDD\|173833
NZ_CP015402.2\|WP_068960335.1\|1000034_1000793_+\|3-deoxy-manno-octulosonate-cytidylyltransferase	unknown	unknown	gnl\|CDD\|235473

Protein	Function_ID	Function_description	E-value
NZ_CP015402.2\|WP_068960345.1\|1014135_1014561_-\|Holliday-junction-resolvase-RuvX	gnl\|CDD\|340815	cd16964, YqgF, putative pre-16S rRNA nuclease YqgF and RuvX family. Escherichia coli YqgF has been shown to act as a pre-16S rRNA nuclease, presumably as a monomer. It is involved in the processing of pre-16S rRNA during ribosome maturation. The RuvX gene product from Mycobacterium tuberculosis was shown to act, in a dimeric form, as a Holliday junction resolvase (HJR). HJRs endonucleases specifically resolve Holliday junction DNA intermediates during homologous recombination. Holliday junctions are formed by the reciprocal exchange of strands between two DNA duplexes. HJRs occur in archaea, bacteria, and in the mitochondria of certain fungi; they may form homodimers and display structural similarity to RNase H and Hsp70.	9.00406e-43
NZ_CP015402.2\|WP_068960328.1\|993875_994742_+\|4-hydroxy-3-methylbut-2-enyl-diphosphate-reductase	gnl\|CDD\|234893	PRK01045, ispH, 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed.	3.42674e-112
NZ_CP015402.2\|WP_068960338.1\|1003551_1005234_+\|hypothetical-protein	gnl\|CDD\|224978	COG2067, FadL, Long-chain fatty acid transport protein [Lipid metabolism].	0.000471366
NZ_CP015402.2\|WP_084273962.1\|1014692_1014977_-\|hypothetical-protein	gnl\|CDD\|153229	cd03135, GATase1_DJ-1, Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1. Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1. DJ-1 is involved in multiple physiological processes including cancer, Parkinson's disease and male fertility. It is unclear how DJ-1 functions in these. DJ-1 has been shown to possess chaperone activity. DJ-1 is preferentially expressed in the testis and moderately in other tissues; it is induced together with genes involved in oxidative stress response. The Drosophila homologue (DJ-1A) plays an essential role in oxidative stress response and neuronal maintenance. Inhibition of DJ-1A function through RNAi, results in the cellular accumulation of reactive oxygen species, organismal hypersensitivity to oxidative stress, and dysfunction and degeneration of dopaminergic and photoreceptor neurons. DJ-1 has lacks enzymatic activity and the catalytic triad of typical GATase1 domains, however it does contain the highly conserved cysteine located at the nucelophile elbow region typical of these domains. This cysteine been proposed to be a site of regulation of DJ-1 activity by oxidation. DJ-1 is a dimeric enzyme.	2.3229e-15
NZ_CP015402.2\|WP_068960327.1\|993174_993879_+\|(d)CMP-kinase	gnl\|CDD\|234579	PRK00023, cmk, (d)CMP kinase.	6.56507e-111
NZ_CP015402.2\|WP_068960343.1\|1011850_1013536_-\|energy-dependent-translational-throttle-protein-EttA	gnl\|CDD\|236992	PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed.	0
NZ_CP015402.2\|WP_068960339.1\|1006911_1007709_-\|alpha/beta-hydrolase	gnl\|CDD\|223730	COG0657, Aes, Esterase/lipase [Lipid metabolism].	3.16742e-20
NZ_CP015402.2\|WP_068960346.1\|1015243_1015654_-\|hypothetical-protein	gnl\|CDD\|334761	pfam01965, DJ-1_PfpI, DJ-1/PfpI family. The family includes the protease PfpI. This domain is also found in transcriptional regulators.	4.7892e-23
NZ_CP015402.2\|WP_068960342.1\|1010376_1011768_+\|asparagine--tRNA-ligase	gnl\|CDD\|235176	PRK03932, asnC, asparaginyl-tRNA synthetase; Validated.	0
NZ_CP015402.2\|WP_068960340.1\|1007857_1008301_+\|transcriptional-repressor	gnl\|CDD\|223806	COG0735, Fur, Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism].	2.41209e-22
NZ_CP015402.2\|WP_068960344.1\|1013569_1014139_-\|peptide-deformylase	gnl\|CDD\|234668	PRK00150, def, peptide deformylase; Reviewed.	1.40954e-68
NZ_CP015402.2\|WP_068960336.1\|1000800_1002090_+\|insulinase-family-protein	gnl\|CDD\|223685	COG0612, PqqL, Predicted Zn-dependent peptidases [General function prediction only].	3.76933e-42
NZ_CP015402.2\|WP_084274216.1\|998929_1000021_+\|flippase-like-domain-containing-protein	gnl\|CDD\|377103	pfam03706, LPG_synthase_TM, Lysylphosphatidylglycerol synthase TM region. LPG_synthase_TM is the N-terminal region of this family of bacterial phosphatidylglycerol lysyltransferases. The function of the family is to add lysyl groups to membrane lipids, and this region is the transmembrane domain of 7xTMs. In order to counteract attack by membrane-damaging external cationic antimicrobial molecules - from host immune systems, bacteriocins, defencins, etc - bacteria modify their anionic membrane phosphatidylglycerol with positively-charged L-lysine; this results in repulsion of the foreign cationic peptides.	5.54728e-24
NZ_CP015402.2\|WP_068960332.1\|996795_997620_+\|TatD-family-hydrolase	gnl\|CDD\|238635	cd01310, TatD_DNAse, TatD like proteins; E.coli TatD is a cytoplasmic protein, shown to have magnesium dependent DNase activity.	1.35154e-86
NZ_CP015402.2\|WP_068960341.1\|1008733_1010287_+\|pseudouridine-synthase	gnl\|CDD\|224108	COG1187, RsuA, 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases [Translation, ribosomal structure and biogenesis].	7.1376e-85
NZ_CP015402.2\|WP_068960326.1\|990908_992222_+\|sigma-54-dependent-Fis-family-transcriptional-regulator	gnl\|CDD\|225114	COG2204, AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms].	4.04686e-42
NZ_CP015402.2\|WP_068960329.1\|994734_995259_+\|hypothetical-protein	gnl\|CDD\|99834	cd06130, DNA_pol_III_epsilon_like, an uncharacterized bacterial subgroup of the DEDDh 3'-5' exonuclease domain family with similarity to the epsilon subunit of DNA polymerase III. This subfamily is composed of uncharacterized bacterial proteins with similarity to the epsilon subunit of DNA polymerase III (Pol III), a multisubunit polymerase which is the main DNA replicating enzyme in bacteria, functioning as the chromosomal replicase. The Pol III holoenzyme is a complex of ten different subunits, three of which (alpha, epsilon, and theta) compose the catalytic core. The Pol III epsilon subunit, encoded by the dnaQ gene, is a DEDDh-type 3'-5' exonuclease which is responsible for the proofreading activity of the polymerase, increasing the fidelity of DNA synthesis. It contains three conserved sequence motifs termed ExoI, ExoII and ExoIII, with a specific Hx(4)D conserved pattern at ExoIII. These motifs are clustered around the active site and contain four conserved acidic residues that serve as ligands for the two metal ions required for catalysis. The epsilon subunit of Pol III also functions as a stabilizer of the holoenzyme complex.	1.11897e-54
NZ_CP015402.2\|WP_068960331.1\|995827_996796_+\|polyprenyl-synthetase-family-protein	gnl\|CDD\|173833	cd00685, Trans_IPPS_HT, Trans-Isoprenyl Diphosphate Synthases, head-to-tail. These trans-Isoprenyl Diphosphate Synthases (Trans_IPPS) catalyze head-to-tail (HT) (1'-4) condensation reactions. This CD includes all-trans (E)-isoprenyl diphosphate synthases which synthesize various chain length (C10, C15, C20, C25, C30, C35, C40, C45, and C50) linear isoprenyl diphosphates from precursors, isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). They catalyze the successive 1'-4 condensation of the 5-carbon IPP to allylic substrates geranyl-, farnesyl-, or geranylgeranyl-diphosphate. Isoprenoid chain elongation reactions proceed via electrophilic alkylations in which a new carbon-carbon single bond is generated through interaction between a highly reactive electron-deficient allylic carbocation and an electron-rich carbon-carbon double bond. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions (DDXX(XX)D) located on opposite walls. These residues mediate binding of prenyl phosphates via bridging Mg2+ ions, inducing proposed conformational changes that close the active site to solvent, protecting and stabilizing reactive carbocation intermediates. Farnesyl diphosphate synthases produce the precursors of steroids, cholesterol, sesquiterpenes, farnsylated proteins, heme, and vitamin K12; and geranylgeranyl diphosphate and longer chain synthases produce the precursors of carotenoids, retinoids, diterpenes, geranylgeranylated chlorophylls, ubiquinone, and archaeal ether linked lipids. Isoprenyl diphosphate synthases are widely distributed among archaea, bacteria, and eukareya.	1.02415e-90
NZ_CP015402.2\|WP_068960335.1\|1000034_1000793_+\|3-deoxy-manno-octulosonate-cytidylyltransferase	gnl\|CDD\|235473	PRK05450, PRK05450, 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional.	1.17851e-124

>NZ_CP015402.2|WP_068960336.1|1000800_1002090_+|insulinase-family-protein
MLDRITPPEVRPFGHLSLPPMKRIVLDNGIILNVYDHSFQDVSELMLLTPGGMVEAMGSPVASMLVPVMLDGSRMYPGSALSDVFDFNGAKISPSVSDHFTGVSIRMLNSHWEKLLPVYADMIFSPELDSHAVDTCRHRMAQSAAIAMQRVEYKAQKTVRELAYGADHPKAVMDTPQSVEAVSREDFLRWHDCIFSRNLSGAELFLSGRVTPPMIDGINRIFGSVAVDTDSDTSPHILPFDTVAPSFRFIESPGALQSAIRFAIPSIPRTHPDYIMLRCAVVALGGYFGSRLMSNIREDKGYTYGIQAGLLGSPEGTVMLVQTSADNAYAEAVVNEIRAEIERLYSGDFTDEEMERLRQYLMSTLAQHLDTAFSISACHVTERISFTGSEYFARQVDVISSMTPDALCNVARRHLPLDKEIVVIAGSKV
>NZ_CP015402.2|WP_068960335.1|1000034_1000793_+|3-deoxy-manno-octulosonate-cytidylyltransferase
MTTFIGIIPARYASSRFPGKPLADICGMTMIERVYRQASKELDEVVVATDDERIADAVRAFGGNVVMTSDTHRSGTDRCCEAYHKSGSKADVVINIQGDEPFIDPCQIAALKQCFDSDSTDIATLVRPFDRNGSYEALSDPNRPKVVVGDDMSAVYFSRSVIPYLRNYPREEWPSRAQYYTHVGMYAYRAAVLDRITSLPQSTLEIAESLEQLRWLQAGYCIKVGLTECPTIGIDTPEDLCHAIEFCKSIEA
>NZ_CP015402.2|WP_084274216.1|998929_1000021_+|flippase-like-domain-containing-protein
MWKVLIPVVIGLTVVVWLFRREFSVKVWDSIHFDVHVIVCILLAWLCMAGRDFGLTWRFRSLTDRELTWWQAIKVNFMCEFTSAVTPSAVGGSSLGMIFLHHEGIALGRATTLMMTTLFLDELFFVVSCPIIVAIVPYDELFGFSHTKFEIGLRWVFWIVYAVLFAWTLILFLGIILKPEGVRKALIWLFGWKLLRRWQPAVISLGDSMVATAKSLRTRSWKWWGEVFGATALTWTSRYLVVNALFLGFVPAANQLVVFARQFVVWVVLMVSPTPGGSGVSEWLFTEYYGDMLGNASVALIIALFWRIITYYVYLIVGVFLAPSMLSGRTARPVVADLEIAIDSTTADSDIKNKQDDRTAAEK
>NZ_CP015402.2|WP_068960332.1|996795_997620_+|TatD-family-hydrolase
MLVDTHTHIYLPEEFQDTDEVIDRAVKAGVGHMILPNVDMLTLQPMLALHERYPELTSVAVGLHPTEVDCGFENVLGHMRAILDNPPVGLCAVGEIGIDLYWDTTHRSEQREVFATQCRWAVEKDLPVIIHCREGLDDTLEVLSGLDATPRGVFHSFGGSADDVDRIRRVGDFYFGINGIVTFKNSRLRDVLTDIGIDRILLETDSPYLAPVPHRGHRNESAYVALVAHTVADSLGIDYDDVCRRTTVNAMTLFGIMGRVTDATAFKTVQVQSD
>NZ_CP015402.2|WP_068960331.1|995827_996796_+|polyprenyl-synthetase-family-protein
MNTKEWYADYINQTVNDIKYPVEPEGLYAPIAYTLASGGKRLRPMLLLAACEACGASADSAVNQALGIEMYHNFTLLHDDVMDRADVRRGRPTVHVKWDDSTAILSGDAMLTMAGRLVMKVVDDKILRPVMELFNTTAMEVYEGQQYDMDFEHRDDVTIDEYLNMIRLKTSVLLGAACKLGAIVAGADAATADSLYEYGTMLGLAFQLQDDYLDTFGDPAVFGKAIGGDILNDKKTYLLISALRCGDDAVASEIASMFGVRSDHKIERIRQLYVEYGIDRLCREAIDYYSDMAEKSVLATDLPADAKEFFVDIARKSRARSK
>NZ_CP015402.2|WP_068960330.1|995255_995786_+|hypothetical-protein
MNSAMRIISRYHIYNVAVSILIAATMAACGCSSSHDFKLVSQRGANDAQTFVQRASSMSQMQMEGFLLKVRANEHEYRSEGRSALADAYIEAFEVTLAHRSDSLANIILGPEATAVLRGRSEISISDVPAPVASKSSSSGERIVQNPDLVDKENAGDILEEDGIIVDESGSVADIK
>NZ_CP015402.2|WP_068960329.1|994734_995259_+|hypothetical-protein
MDNFIAIDVETANNQPTSICAIGAVLVIDGIIKSTFYELVRPEPNWYIRYFSTSIHGIYPNDTENCSGFSLVWSRMADTFAVYGADMETIPFVAHNKSFDEKCIRACHRIYSMTWPDNPFFCTLSAARRSIRRADIGGSYSLPCVANYLGIPFDNHHNAQADALACAKIAMCLL
>NZ_CP015402.2|WP_068960328.1|993875_994742_+|4-hydroxy-3-methylbut-2-enyl-diphosphate-reductase
MRVEIDQASGFCNGVVTAIRKAEQELDSSNRLYCLGDIVHNSDEVERLCSRGLVTITHDDLHSLHGVKVLLRAHGEPPSTYATAKANDIDIIDATCPVVLHLQKRIRESYDRRSPGQQIVIYGKRGHAEVNGLVGQTDGEAVVVEDVAGLDRLDFNRDIILYSQTTKSVHGFHEMIREIERRKSPDTRFEYVDTICRQVANRVPQLRAFAAEHEVILFVSGRKSSNGRFLYGECHDVNPMTYFISNPDEIQPDWISEVESIGICGATSTPRWLMEQVRDRINQLQPNG
>NZ_CP015402.2|WP_068960327.1|993174_993879_+|(d)CMP-kinase
MSSSDNKIIIAIDGYSSSGKSSMARALASSIGYRYVDSGAMYRAVTLWGLRRGIVSDGTVDEEALIAALPDIAIDFQPIPGEGQHTLLCGEDVESEIRSLRVSDNVSQVAVIPAVRHHLVALQQQFGREKGIVMDGRDIGTTVFPDAEMKVFVDASAETRAHRRFLELQQKGMEATYEDVLANVKQRDHIDTTRAESPLTKASDAISLDNSDMTIAEQNEWLIELYNRILAAKR
>NZ_CP015402.2|WP_068960326.1|990908_992222_+|sigma-54-dependent-Fis-family-transcriptional-regulator
MKILLYEPDQRTGEPIYHALRREGHDVIWIQEYMDARTKILDEKFDASLIEIDDYEGLRLIESWVEQSPRLLCVAIYKEQDAGVGFKASKLGSQEIYEIEHGSIAELDRILKQYKILARLPQVYRHKSVEYNKAVSDLRNLVNHHKPVIITGEVGTGKSYLAEHVHRDDSDTVFRLEEIQCSTLNVENAMELFLGVVRGFRPEIKQHRKGLIDKSNDKGLLYLKDIADLPANLQEVLLDILERGEYRRVGSEIWEPFTAHLIVSCKDISEIRTDRFDRRLYDLLSHNIVRIPPLRECPADIVSNAEQMAEDYCRSKGIVAIPVFNADAMIKLMAHDWLGNYRELKSCVENAVVCCTGNTITASDLHITPVESDTPPEDDKGKLIFYLDKFCGKKVDVMKALGITAPTLDKRLKKYGIDYKLFKKKKERKPRRKAATS
>NZ_CP015402.2|WP_068960338.1|1003551_1005234_+|hypothetical-protein
MKKSLFIAAAAAVPAIAMAQAGVDVAHLSELGMRGTARFMSMGGAFTALGGDLSTLGQNPAGIGIYRSSEVGITLDLNFQSFQASAPSMTDTHNQTRFNVNNFGYIGTMKLYSEATPTFSFGASYSRINSFDRVFKGNFNNLGGSSLSNYVAAFTNSLNPMGDGYSPYRDVDLIWGSNYNPYDNAPWMSVLAYNSLIINNGQENSNGQISFQGLMGDGTTGSANFDIREKGHVDEYNITFGGNIYNTLYWGIGFGITDVDYTQWSYYGERLSNAYLSVRTDEGPKDLYYKDVPGTASYGLTNYLHSSGSGFNVKFGLILKPINEFRIGIAVHTPTWYSMTDTYWGAIDYNMLPDNGLLAPNGEHYKNETDNVVANDSYDNFHDYHLRTHWRIMVGAAGVIGGKAIISADYEYRGANMQLSDVNNNEYVDVSDEIKTYYKGVNIFRVGAEYRVTPQLSLRAGYSYESSPVKQWVANDGENIQFAGTIPSYSFNKATQYITAGLGYRVGRFAIDLAYVNKHRESTWHAYSPIVAEGTIVMDSPQATVKSNYNQLVLSLGYKF
>NZ_CP015402.2|WP_068960339.1|1006911_1007709_-|alpha/beta-hydrolase
MKFLRKMFTAMSLGALATVSLPAQNGAPRIIRIDNPKMTVFLPPTSAATGRAVVDLPGGGYSHLATGHEGFDWVPYFNGMGIAYAVVEYTLPAGNRELPYKDATDAIKTMREHASEWGIKTDDIGIMGSSAGGHLATTVATHADTTARPDFQILFYPVISMKDEITHGGSRKSLLGEKPSEADILEYSNELKVTADTPPAIILLSDDDKGVVPANSLRYYEALHQAGVPASMVIYPSGGHGWGYKPSFKYHDAMLNQLKEWLTGF
>NZ_CP015402.2|WP_068960340.1|1007857_1008301_+|transcriptional-repressor
MDSVNKYTANIDDILQRRQVRPTANRIAIFRELLNAGGPLSMAELEERLVTIDKSGLSRTLGLFASRHLVHVIEDGSGAAKYEACQGHSDHSIDDMHPHFHCEGCGVTVCLDDTPVPLVSVPDGYEVYSVNYVIKGLCGVCASKYNS
>NZ_CP015402.2|WP_068960341.1|1008733_1010287_+|pseudouridine-synthase
MDTNNEEKKPRRPRIGDRMQVGEGGDAVFNSTKPNYSNPSPADDSQGPRNDYGQRPYQPRQYNNNRPGGYQPRYNNQGGYNRQGGYNNRYNQGGYQPRYNNNAQSAAVSESGDSASASPATPYNSDSQQSNYQGGYQPRYNNQGGYNNRQGGYNNQNRQGGYNNQNRQGGYNRQGGYNNQNRQGGYNNQNRQGGYNNQNRQGGYNNQNRQGGYNNQNRQGGYNNQNRQGGYNNRPGGYNKNRQQGGMRQQGGFGAPRQGKSFTPRPKRIEYEMPIPDPNEQIRLNKFMANAGICSRREADEFIQQGLVKVNGEVVTELGTKISHNDVVEYDEKVVTLESKCYILLNKPKDCVTTSDDPNGRTTVMDLVKGACNERIYPVGRLDRNTTGVLLLTNDGDLASKLTHPKYVKKKIYHVWTDKDISEDDMQAIADGIELEDGPIHADAISYATETDRNQAGIEIHSGRNRIVRRIFESLGYHVTKLDRVYFAGLTKKNLPRGRWRYLTQEEVNFLKMGSFE
>NZ_CP015402.2|WP_068960342.1|1010376_1011768_+|asparagine--tRNA-ligase
MKREKIIDLFKKAELIGTEVTVMGWVRTRRGNKHVQFVALNDGSTVRNIQIVLDMTRFSDEQLKPITTGSALRVDGRLVESMGKGQTVEVQADNVLVYGTADPETYPLQKKGHTLEFLREKAHLRPRTNTFGAILRVRSALAFAIHRFFQERGFFYLNTPLITGSDCEGAGAMFQVTTLPLNELPKTEDGVVDYSKDFFGKPTALTVSGQLEGELGATALGAIYTFGPTFRAENSNTPRHLSEFWMIEPEVSFFDITDNMDLAEAFVKYCISYALENCRDDIEFLAEHYDKELIERLNFVISNDFVRLTYTEGVKILEESGHKFEFPVYWGADLQSEHERFLVEEYFKKPVILTDYPKEIKAFYMKQNEDGKTVRAMDVLFPNIGEIIGGSEREENYDKLLARIEELDIPMKDMWWYLDTRRFGTVPHSGFGLGFERLVLFVTGMTNIRDVIPFPRTPNNAEF
>NZ_CP015402.2|WP_068960343.1|1011850_1013536_-|energy-dependent-translational-throttle-protein-EttA
MADDKKIIFSMVGVSKIYPPQKQVLKNIYLSFFYGAKIGIIGLNGSGKSSLLKIIAGIDKSYQGEVVFSPGYSVGYLEQEPQLDPDKTVIDVVREGVKPVMDLLAEFEKVNEAFGDPEVLEDPDKMDALIQRQAELQDKLDAADAWNIDSKLERAMDALQCPPDDQKISTLSGGERRRVALIRLLLQQPDVLLLDEPTNHLDAESIDWLEQHLQQYPGTVIAITHDRYFLDHVAGWILELDRGEGIPWKGNYSSWLDQKTKRMAQEEKQASKRRKTLERELEWVRMAPKARQAKGKARLNSYDKLLNEDQKAREERLEIFIPNGPRLGNKVIEASGLAKAFGKKQLFSDLSFSLPPNGIVGVIGPNGAGKTTLFRLIMGQETPDAGTFDVGETVKIAYVDQRHHDLLPEKSVYEVISQGTDSFRMGGRDINARAYLSKFNFTGADQEKKIGVLSGGERNRLHLAMALKEEGNVLLLDEPTNDIDVNTLRALEEGLDDFAGCAVVVSHDRWFLDRICTHILSFEPDGNVVFYEGSYSDYEDYKRARNGGKELPRRRYRKLME
>NZ_CP015402.2|WP_068960344.1|1013569_1014139_-|peptide-deformylase
MKLPVYLYGHPVLRAISTDVTPEYPELKKFVADMWETMYNSDGVGLAAPQVGRNDRIVVIDADPVADAFPECKGRKFTLINPEIEILDGPVETRNEGCLSLPDLSESVPRVEHIRLKWVDDDFQPHEEEISGFLARIVQHECDHLEGKLYIDHISAIRRQLLRAKLSAIITGRKRVDYPVRYAPQKGRK
>NZ_CP015402.2|WP_068960345.1|1014135_1014561_-|Holliday-junction-resolvase-RuvX
MGRLMAIDYGRRRCGIAVTDPLRIVATGLTTVRTCDLAKWVADYILKENVDAIIVGKPSTMRGEDSESMNYIRPGIAMLRKALPQDIEITYWDERFTSVLAHRAMIDGGMRKSRRQDKAVVDEIAATIILNDYLQSKQFNQ
>NZ_CP015402.2|WP_084273962.1|1014692_1014977_-|hypothetical-protein
MTALTVTFIIKQALILGPLGIIKGVKATGYPFLKEDLERNGGIYSEEPVVIGDRMITSKGPGTTIEFALAIVRKAKGPETEKALREGMVIPECE
>NZ_CP015402.2|WP_068960346.1|1015243_1015654_-|hypothetical-protein
MTETSIRIPTSSRPSGKATFVMLGNGFDEIEALAPVDVMRRAGMKVFTVSMTDKRLVRGATGNNIVADMGISDLNPEHIDWLVFPGADKSEDAVNLDESLNDIVKDHWDKGGNIAAICAAPALRACLIINVAARVV

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Crispr_ID: NZ_CP015402_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP015402_2

1008938-1009036

Orphan

Consensus_repeat	Method
GGCTATCAGCCCCGCTACAATAAT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP015402_2

>merge|NZ_CP015402|2|1008938-1009036|CRISPRCasFinder
GGCTATCAGCCCCGCTACAATAATCAGGGTGGCTACAATCGTCAGGGTGGTTACAACAATCGGTATAATCAAGGAGGCTATCAGCCCCGTTACAATAAT

>NZ_CP015402|2|2|1008938-1009036|CRISPRCasFinder
GGCTATCAGCCCCGCTACAATAAT	CAGGGTGGCTACAATCGTCAGGGTGGTTACAACAATCGGTATAATCAAGGA
GGCTATCAGCCCCGTTACAATAAT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP015402.2\|WP_084274217.1\|1016195_1016510_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224647
NZ_CP015402.2\|WP_068960345.1\|1014135_1014561_-\|Holliday-junction-resolvase-RuvX	unknown	unknown	gnl\|CDD\|340815
NZ_CP015402.2\|WP_084273962.1\|1014692_1014977_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|153229
NZ_CP015402.2\|WP_068960338.1\|1003551_1005234_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|224978
NZ_CP015402.2\|WP_068960343.1\|1011850_1013536_-\|energy-dependent-translational-throttle-protein-EttA	unknown	unknown	gnl\|CDD\|236992
NZ_CP015402.2\|WP_068960330.1\|995255_995786_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP015402.2\|WP_068960337.1\|1002297_1003488_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|215598
NZ_CP015402.2\|WP_068960339.1\|1006911_1007709_-\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|223730
NZ_CP015402.2\|WP_068960346.1\|1015243_1015654_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|334761
NZ_CP015402.2\|WP_068960342.1\|1010376_1011768_+\|asparagine--tRNA-ligase	unknown	unknown	gnl\|CDD\|235176
NZ_CP015402.2\|WP_068960348.1\|1016797_1017727_+\|class-A-beta-lactamase	unknown	unknown	gnl\|CDD\|379138
NZ_CP015402.2\|WP_068960344.1\|1013569_1014139_-\|peptide-deformylase	unknown	unknown	gnl\|CDD\|234668
NZ_CP015402.2\|WP_068960336.1\|1000800_1002090_+\|insulinase-family-protein	unknown	unknown	gnl\|CDD\|223685
NZ_CP015402.2\|WP_084274216.1\|998929_1000021_+\|flippase-like-domain-containing-protein	unknown	unknown	gnl\|CDD\|377103
NZ_CP015402.2\|WP_084273963.1\|1015807_1015996_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224647
NZ_CP015402.2\|WP_068960332.1\|996795_997620_+\|TatD-family-hydrolase	unknown	unknown	gnl\|CDD\|238635
NZ_CP015402.2\|WP_068960340.1\|1007857_1008301_+\|transcriptional-repressor	unknown	unknown	gnl\|CDD\|223806
NZ_CP015402.2\|WP_068960349.1\|1017732_1018374_+\|DUF4893-domain-containing-protein	unknown	unknown	gnl\|CDD\|374448
NZ_CP015402.2\|WP_068960331.1\|995827_996796_+\|polyprenyl-synthetase-family-protein	unknown	unknown	gnl\|CDD\|173833
NZ_CP015402.2\|WP_068960335.1\|1000034_1000793_+\|3-deoxy-manno-octulosonate-cytidylyltransferase	unknown	unknown	gnl\|CDD\|235473

Protein	Function_ID	Function_description	E-value
NZ_CP015402.2\|WP_084274217.1\|1016195_1016510_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|224647	COG1733, COG1733, Predicted transcriptional regulators [Transcription].	1.93361e-26
NZ_CP015402.2\|WP_068960345.1\|1014135_1014561_-\|Holliday-junction-resolvase-RuvX	gnl\|CDD\|340815	cd16964, YqgF, putative pre-16S rRNA nuclease YqgF and RuvX family. Escherichia coli YqgF has been shown to act as a pre-16S rRNA nuclease, presumably as a monomer. It is involved in the processing of pre-16S rRNA during ribosome maturation. The RuvX gene product from Mycobacterium tuberculosis was shown to act, in a dimeric form, as a Holliday junction resolvase (HJR). HJRs endonucleases specifically resolve Holliday junction DNA intermediates during homologous recombination. Holliday junctions are formed by the reciprocal exchange of strands between two DNA duplexes. HJRs occur in archaea, bacteria, and in the mitochondria of certain fungi; they may form homodimers and display structural similarity to RNase H and Hsp70.	9.00406e-43
NZ_CP015402.2\|WP_084273962.1\|1014692_1014977_-\|hypothetical-protein	gnl\|CDD\|153229	cd03135, GATase1_DJ-1, Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1. Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1. DJ-1 is involved in multiple physiological processes including cancer, Parkinson's disease and male fertility. It is unclear how DJ-1 functions in these. DJ-1 has been shown to possess chaperone activity. DJ-1 is preferentially expressed in the testis and moderately in other tissues; it is induced together with genes involved in oxidative stress response. The Drosophila homologue (DJ-1A) plays an essential role in oxidative stress response and neuronal maintenance. Inhibition of DJ-1A function through RNAi, results in the cellular accumulation of reactive oxygen species, organismal hypersensitivity to oxidative stress, and dysfunction and degeneration of dopaminergic and photoreceptor neurons. DJ-1 has lacks enzymatic activity and the catalytic triad of typical GATase1 domains, however it does contain the highly conserved cysteine located at the nucelophile elbow region typical of these domains. This cysteine been proposed to be a site of regulation of DJ-1 activity by oxidation. DJ-1 is a dimeric enzyme.	2.3229e-15
NZ_CP015402.2\|WP_068960338.1\|1003551_1005234_+\|hypothetical-protein	gnl\|CDD\|224978	COG2067, FadL, Long-chain fatty acid transport protein [Lipid metabolism].	0.000471366
NZ_CP015402.2\|WP_068960331.1\|995827_996796_+\|polyprenyl-synthetase-family-protein	gnl\|CDD\|173833	cd00685, Trans_IPPS_HT, Trans-Isoprenyl Diphosphate Synthases, head-to-tail. These trans-Isoprenyl Diphosphate Synthases (Trans_IPPS) catalyze head-to-tail (HT) (1'-4) condensation reactions. This CD includes all-trans (E)-isoprenyl diphosphate synthases which synthesize various chain length (C10, C15, C20, C25, C30, C35, C40, C45, and C50) linear isoprenyl diphosphates from precursors, isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). They catalyze the successive 1'-4 condensation of the 5-carbon IPP to allylic substrates geranyl-, farnesyl-, or geranylgeranyl-diphosphate. Isoprenoid chain elongation reactions proceed via electrophilic alkylations in which a new carbon-carbon single bond is generated through interaction between a highly reactive electron-deficient allylic carbocation and an electron-rich carbon-carbon double bond. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions (DDXX(XX)D) located on opposite walls. These residues mediate binding of prenyl phosphates via bridging Mg2+ ions, inducing proposed conformational changes that close the active site to solvent, protecting and stabilizing reactive carbocation intermediates. Farnesyl diphosphate synthases produce the precursors of steroids, cholesterol, sesquiterpenes, farnsylated proteins, heme, and vitamin K12; and geranylgeranyl diphosphate and longer chain synthases produce the precursors of carotenoids, retinoids, diterpenes, geranylgeranylated chlorophylls, ubiquinone, and archaeal ether linked lipids. Isoprenyl diphosphate synthases are widely distributed among archaea, bacteria, and eukareya.	1.02415e-90
NZ_CP015402.2\|WP_068960337.1\|1002297_1003488_+\|hypothetical-protein	gnl\|CDD\|215598	PLN03138, PLN03138, Protein TOC75; Provisional.	8.47814e-05
NZ_CP015402.2\|WP_068960339.1\|1006911_1007709_-\|alpha/beta-hydrolase	gnl\|CDD\|223730	COG0657, Aes, Esterase/lipase [Lipid metabolism].	3.16742e-20
NZ_CP015402.2\|WP_068960346.1\|1015243_1015654_-\|hypothetical-protein	gnl\|CDD\|334761	pfam01965, DJ-1_PfpI, DJ-1/PfpI family. The family includes the protease PfpI. This domain is also found in transcriptional regulators.	4.7892e-23
NZ_CP015402.2\|WP_068960342.1\|1010376_1011768_+\|asparagine--tRNA-ligase	gnl\|CDD\|235176	PRK03932, asnC, asparaginyl-tRNA synthetase; Validated.	0
NZ_CP015402.2\|WP_068960348.1\|1016797_1017727_+\|class-A-beta-lactamase	gnl\|CDD\|379138	pfam13354, Beta-lactamase2, Beta-lactamase enzyme family. This family is closely related to Beta-lactamase, pfam00144, the serine beta-lactamase-like superfamily, which contains the distantly related pfam00905 and PF00768 D-alanyl-D-alanine carboxypeptidase.	1.32127e-24
NZ_CP015402.2\|WP_068960344.1\|1013569_1014139_-\|peptide-deformylase	gnl\|CDD\|234668	PRK00150, def, peptide deformylase; Reviewed.	1.40954e-68
NZ_CP015402.2\|WP_068960336.1\|1000800_1002090_+\|insulinase-family-protein	gnl\|CDD\|223685	COG0612, PqqL, Predicted Zn-dependent peptidases [General function prediction only].	3.76933e-42
NZ_CP015402.2\|WP_084274216.1\|998929_1000021_+\|flippase-like-domain-containing-protein	gnl\|CDD\|377103	pfam03706, LPG_synthase_TM, Lysylphosphatidylglycerol synthase TM region. LPG_synthase_TM is the N-terminal region of this family of bacterial phosphatidylglycerol lysyltransferases. The function of the family is to add lysyl groups to membrane lipids, and this region is the transmembrane domain of 7xTMs. In order to counteract attack by membrane-damaging external cationic antimicrobial molecules - from host immune systems, bacteriocins, defencins, etc - bacteria modify their anionic membrane phosphatidylglycerol with positively-charged L-lysine; this results in repulsion of the foreign cationic peptides.	5.54728e-24
NZ_CP015402.2\|WP_084273963.1\|1015807_1015996_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|224647	COG1733, COG1733, Predicted transcriptional regulators [Transcription].	5.26433e-10
NZ_CP015402.2\|WP_068960332.1\|996795_997620_+\|TatD-family-hydrolase	gnl\|CDD\|238635	cd01310, TatD_DNAse, TatD like proteins; E.coli TatD is a cytoplasmic protein, shown to have magnesium dependent DNase activity.	1.35154e-86
NZ_CP015402.2\|WP_068960340.1\|1007857_1008301_+\|transcriptional-repressor	gnl\|CDD\|223806	COG0735, Fur, Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism].	2.41209e-22
NZ_CP015402.2\|WP_068960349.1\|1017732_1018374_+\|DUF4893-domain-containing-protein	gnl\|CDD\|374448	pfam16233, DUF4893, Domain of unknown function (DUF4893). This family consists of uncharacterized proteins around 200 residues in length and is mainly found in various Pseudomonas species. The function of this family is unknown.	1.52715e-18
NZ_CP015402.2\|WP_068960343.1\|1011850_1013536_-\|energy-dependent-translational-throttle-protein-EttA	gnl\|CDD\|236992	PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed.	0
NZ_CP015402.2\|WP_068960335.1\|1000034_1000793_+\|3-deoxy-manno-octulosonate-cytidylyltransferase	gnl\|CDD\|235473	PRK05450, PRK05450, 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional.	1.17851e-124

>NZ_CP015402.2|WP_068960340.1|1007857_1008301_+|transcriptional-repressor
MDSVNKYTANIDDILQRRQVRPTANRIAIFRELLNAGGPLSMAELEERLVTIDKSGLSRTLGLFASRHLVHVIEDGSGAAKYEACQGHSDHSIDDMHPHFHCEGCGVTVCLDDTPVPLVSVPDGYEVYSVNYVIKGLCGVCASKYNS
>NZ_CP015402.2|WP_068960339.1|1006911_1007709_-|alpha/beta-hydrolase
MKFLRKMFTAMSLGALATVSLPAQNGAPRIIRIDNPKMTVFLPPTSAATGRAVVDLPGGGYSHLATGHEGFDWVPYFNGMGIAYAVVEYTLPAGNRELPYKDATDAIKTMREHASEWGIKTDDIGIMGSSAGGHLATTVATHADTTARPDFQILFYPVISMKDEITHGGSRKSLLGEKPSEADILEYSNELKVTADTPPAIILLSDDDKGVVPANSLRYYEALHQAGVPASMVIYPSGGHGWGYKPSFKYHDAMLNQLKEWLTGF
>NZ_CP015402.2|WP_068960338.1|1003551_1005234_+|hypothetical-protein
MKKSLFIAAAAAVPAIAMAQAGVDVAHLSELGMRGTARFMSMGGAFTALGGDLSTLGQNPAGIGIYRSSEVGITLDLNFQSFQASAPSMTDTHNQTRFNVNNFGYIGTMKLYSEATPTFSFGASYSRINSFDRVFKGNFNNLGGSSLSNYVAAFTNSLNPMGDGYSPYRDVDLIWGSNYNPYDNAPWMSVLAYNSLIINNGQENSNGQISFQGLMGDGTTGSANFDIREKGHVDEYNITFGGNIYNTLYWGIGFGITDVDYTQWSYYGERLSNAYLSVRTDEGPKDLYYKDVPGTASYGLTNYLHSSGSGFNVKFGLILKPINEFRIGIAVHTPTWYSMTDTYWGAIDYNMLPDNGLLAPNGEHYKNETDNVVANDSYDNFHDYHLRTHWRIMVGAAGVIGGKAIISADYEYRGANMQLSDVNNNEYVDVSDEIKTYYKGVNIFRVGAEYRVTPQLSLRAGYSYESSPVKQWVANDGENIQFAGTIPSYSFNKATQYITAGLGYRVGRFAIDLAYVNKHRESTWHAYSPIVAEGTIVMDSPQATVKSNYNQLVLSLGYKF
>NZ_CP015402.2|WP_068960337.1|1002297_1003488_+|hypothetical-protein
MKLTKAFLTAFLCGAAATASAQGYYDDDIYYDASKDTKAKEEIAAHKKAVEEERIRQQQQYEAELAYWRSLANQQSTYNPNLGGGDYAAADTYALPGTGSARNVDEYNRRGKYASSSQTGDTTAVDDNFTYTRRIERFHNGDIIADVKDPELVDYYYSSAASQPDINIYLVNSGWNSWGWGPSWYDPWWPSSPYWAWNYWGPSWSFGWNSWWGPSWSWGWGPGWGPGWGPAWGPSWSWGWGPGWGPGWGPGWGGVAWHRGNYTPNGRQSTGIRNGYTGVGSSHPGSPFNSRTNGRAGNVTRQSLGNYRPGGSSSTPASNGNVGNYRPGNNASPSYTPSYTPSNSNSGTYRSGRGNSRSSSPSYSSPSPSRSSGGSGWGGGSSRGGGGGTTSRGGRR
>NZ_CP015402.2|WP_068960336.1|1000800_1002090_+|insulinase-family-protein
MLDRITPPEVRPFGHLSLPPMKRIVLDNGIILNVYDHSFQDVSELMLLTPGGMVEAMGSPVASMLVPVMLDGSRMYPGSALSDVFDFNGAKISPSVSDHFTGVSIRMLNSHWEKLLPVYADMIFSPELDSHAVDTCRHRMAQSAAIAMQRVEYKAQKTVRELAYGADHPKAVMDTPQSVEAVSREDFLRWHDCIFSRNLSGAELFLSGRVTPPMIDGINRIFGSVAVDTDSDTSPHILPFDTVAPSFRFIESPGALQSAIRFAIPSIPRTHPDYIMLRCAVVALGGYFGSRLMSNIREDKGYTYGIQAGLLGSPEGTVMLVQTSADNAYAEAVVNEIRAEIERLYSGDFTDEEMERLRQYLMSTLAQHLDTAFSISACHVTERISFTGSEYFARQVDVISSMTPDALCNVARRHLPLDKEIVVIAGSKV
>NZ_CP015402.2|WP_068960335.1|1000034_1000793_+|3-deoxy-manno-octulosonate-cytidylyltransferase
MTTFIGIIPARYASSRFPGKPLADICGMTMIERVYRQASKELDEVVVATDDERIADAVRAFGGNVVMTSDTHRSGTDRCCEAYHKSGSKADVVINIQGDEPFIDPCQIAALKQCFDSDSTDIATLVRPFDRNGSYEALSDPNRPKVVVGDDMSAVYFSRSVIPYLRNYPREEWPSRAQYYTHVGMYAYRAAVLDRITSLPQSTLEIAESLEQLRWLQAGYCIKVGLTECPTIGIDTPEDLCHAIEFCKSIEA
>NZ_CP015402.2|WP_084274216.1|998929_1000021_+|flippase-like-domain-containing-protein
MWKVLIPVVIGLTVVVWLFRREFSVKVWDSIHFDVHVIVCILLAWLCMAGRDFGLTWRFRSLTDRELTWWQAIKVNFMCEFTSAVTPSAVGGSSLGMIFLHHEGIALGRATTLMMTTLFLDELFFVVSCPIIVAIVPYDELFGFSHTKFEIGLRWVFWIVYAVLFAWTLILFLGIILKPEGVRKALIWLFGWKLLRRWQPAVISLGDSMVATAKSLRTRSWKWWGEVFGATALTWTSRYLVVNALFLGFVPAANQLVVFARQFVVWVVLMVSPTPGGSGVSEWLFTEYYGDMLGNASVALIIALFWRIITYYVYLIVGVFLAPSMLSGRTARPVVADLEIAIDSTTADSDIKNKQDDRTAAEK
>NZ_CP015402.2|WP_068960332.1|996795_997620_+|TatD-family-hydrolase
MLVDTHTHIYLPEEFQDTDEVIDRAVKAGVGHMILPNVDMLTLQPMLALHERYPELTSVAVGLHPTEVDCGFENVLGHMRAILDNPPVGLCAVGEIGIDLYWDTTHRSEQREVFATQCRWAVEKDLPVIIHCREGLDDTLEVLSGLDATPRGVFHSFGGSADDVDRIRRVGDFYFGINGIVTFKNSRLRDVLTDIGIDRILLETDSPYLAPVPHRGHRNESAYVALVAHTVADSLGIDYDDVCRRTTVNAMTLFGIMGRVTDATAFKTVQVQSD
>NZ_CP015402.2|WP_068960331.1|995827_996796_+|polyprenyl-synthetase-family-protein
MNTKEWYADYINQTVNDIKYPVEPEGLYAPIAYTLASGGKRLRPMLLLAACEACGASADSAVNQALGIEMYHNFTLLHDDVMDRADVRRGRPTVHVKWDDSTAILSGDAMLTMAGRLVMKVVDDKILRPVMELFNTTAMEVYEGQQYDMDFEHRDDVTIDEYLNMIRLKTSVLLGAACKLGAIVAGADAATADSLYEYGTMLGLAFQLQDDYLDTFGDPAVFGKAIGGDILNDKKTYLLISALRCGDDAVASEIASMFGVRSDHKIERIRQLYVEYGIDRLCREAIDYYSDMAEKSVLATDLPADAKEFFVDIARKSRARSK
>NZ_CP015402.2|WP_068960330.1|995255_995786_+|hypothetical-protein
MNSAMRIISRYHIYNVAVSILIAATMAACGCSSSHDFKLVSQRGANDAQTFVQRASSMSQMQMEGFLLKVRANEHEYRSEGRSALADAYIEAFEVTLAHRSDSLANIILGPEATAVLRGRSEISISDVPAPVASKSSSSGERIVQNPDLVDKENAGDILEEDGIIVDESGSVADIK
>NZ_CP015402.2|WP_068960342.1|1010376_1011768_+|asparagine--tRNA-ligase
MKREKIIDLFKKAELIGTEVTVMGWVRTRRGNKHVQFVALNDGSTVRNIQIVLDMTRFSDEQLKPITTGSALRVDGRLVESMGKGQTVEVQADNVLVYGTADPETYPLQKKGHTLEFLREKAHLRPRTNTFGAILRVRSALAFAIHRFFQERGFFYLNTPLITGSDCEGAGAMFQVTTLPLNELPKTEDGVVDYSKDFFGKPTALTVSGQLEGELGATALGAIYTFGPTFRAENSNTPRHLSEFWMIEPEVSFFDITDNMDLAEAFVKYCISYALENCRDDIEFLAEHYDKELIERLNFVISNDFVRLTYTEGVKILEESGHKFEFPVYWGADLQSEHERFLVEEYFKKPVILTDYPKEIKAFYMKQNEDGKTVRAMDVLFPNIGEIIGGSEREENYDKLLARIEELDIPMKDMWWYLDTRRFGTVPHSGFGLGFERLVLFVTGMTNIRDVIPFPRTPNNAEF
>NZ_CP015402.2|WP_068960343.1|1011850_1013536_-|energy-dependent-translational-throttle-protein-EttA
MADDKKIIFSMVGVSKIYPPQKQVLKNIYLSFFYGAKIGIIGLNGSGKSSLLKIIAGIDKSYQGEVVFSPGYSVGYLEQEPQLDPDKTVIDVVREGVKPVMDLLAEFEKVNEAFGDPEVLEDPDKMDALIQRQAELQDKLDAADAWNIDSKLERAMDALQCPPDDQKISTLSGGERRRVALIRLLLQQPDVLLLDEPTNHLDAESIDWLEQHLQQYPGTVIAITHDRYFLDHVAGWILELDRGEGIPWKGNYSSWLDQKTKRMAQEEKQASKRRKTLERELEWVRMAPKARQAKGKARLNSYDKLLNEDQKAREERLEIFIPNGPRLGNKVIEASGLAKAFGKKQLFSDLSFSLPPNGIVGVIGPNGAGKTTLFRLIMGQETPDAGTFDVGETVKIAYVDQRHHDLLPEKSVYEVISQGTDSFRMGGRDINARAYLSKFNFTGADQEKKIGVLSGGERNRLHLAMALKEEGNVLLLDEPTNDIDVNTLRALEEGLDDFAGCAVVVSHDRWFLDRICTHILSFEPDGNVVFYEGSYSDYEDYKRARNGGKELPRRRYRKLME
>NZ_CP015402.2|WP_068960344.1|1013569_1014139_-|peptide-deformylase
MKLPVYLYGHPVLRAISTDVTPEYPELKKFVADMWETMYNSDGVGLAAPQVGRNDRIVVIDADPVADAFPECKGRKFTLINPEIEILDGPVETRNEGCLSLPDLSESVPRVEHIRLKWVDDDFQPHEEEISGFLARIVQHECDHLEGKLYIDHISAIRRQLLRAKLSAIITGRKRVDYPVRYAPQKGRK
>NZ_CP015402.2|WP_068960345.1|1014135_1014561_-|Holliday-junction-resolvase-RuvX
MGRLMAIDYGRRRCGIAVTDPLRIVATGLTTVRTCDLAKWVADYILKENVDAIIVGKPSTMRGEDSESMNYIRPGIAMLRKALPQDIEITYWDERFTSVLAHRAMIDGGMRKSRRQDKAVVDEIAATIILNDYLQSKQFNQ
>NZ_CP015402.2|WP_084273962.1|1014692_1014977_-|hypothetical-protein
MTALTVTFIIKQALILGPLGIIKGVKATGYPFLKEDLERNGGIYSEEPVVIGDRMITSKGPGTTIEFALAIVRKAKGPETEKALREGMVIPECE
>NZ_CP015402.2|WP_068960346.1|1015243_1015654_-|hypothetical-protein
MTETSIRIPTSSRPSGKATFVMLGNGFDEIEALAPVDVMRRAGMKVFTVSMTDKRLVRGATGNNIVADMGISDLNPEHIDWLVFPGADKSEDAVNLDESLNDIVKDHWDKGGNIAAICAAPALRACLIINVAARVV
>NZ_CP015402.2|WP_084273963.1|1015807_1015996_+|helix-turn-helix-transcriptional-regulator
MKTEKISEKYSCVATCPMRNVIARFANKWSMLLLVILDEFGVMRFNELSRAIPDISPKVFEL
>NZ_CP015402.2|WP_084274217.1|1016195_1016510_+|helix-turn-helix-transcriptional-regulator
MSLIESKWKSCILDELRSGEAMRPSEIHKCLPEAAPRVLDIQLKEMVEDGLVVKTIYPELPPRSEYRITELGQSLIPIIDLMLKWGREHFDIFEKKYGKSLETV
>NZ_CP015402.2|WP_068960348.1|1016797_1017727_+|class-A-beta-lactamase
MKRPLKQLIILLFILLSVCAGCSSKRYVQHERCYSHIEERLATYIAAQDARIGVAVIIDGRDTISVNGNRDFPMLSVYKFPQAMAVADYCMKNGVGLSDTISIRGDEMKENTWSPMRDRYGVGDLRLPLSELLEYSLRDSDNNACDILFRLIGGTHVADSLMKAMDFDDIVIASTEDEMHRDIYLCYQNRSTPIAMAGLFDRFYRQEMRHDSPLHEAIGRIMMTCTTGNRRLPAPLMPTNAVIGHKTGTGDVNSQGRIIGVNDAGYVFLPDGRGYAVAVFIADSACGMEETERMIADISDIIFQTLFKR
>NZ_CP015402.2|WP_068960349.1|1017732_1018374_+|DUF4893-domain-containing-protein
MKTTILLAAMTMMTSSIVAFPQEPALTGSCAVPEDVAESFFPESIDSGLKSVLLPVDYGRMVNCREWVSDALATVTPDSYGYDEKSGVEKLLNEKTYPVTPADMVGSWRVRSIQIDARDGIFSYPYFRCRFRNVDGKVFFEKTTGSQRKSGFVYQNGPESLAFLGGWSVNDEPQTLYGAENSVAGVLYKIGTRRAIILFPTSADRVEIYELIK

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Crispr_ID: NZ_CP015402_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP015402_3

2617345-2617453

Orphan

Consensus_repeat	Method
GGTGATACGATAGACCGGAGGGTGATGCAGCAGACA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP015402_3

>merge|NZ_CP015402|3|2617345-2617453|CRISPRCasFinder
GGTGATACGATAGACCGGAGGGTGATGCAGCAGACAGGATTGATACGACAGCAGCCTATGCAAATGCCCGGATGGTGATACGATAGACCAGAGGGTGATGCAGCAGACA

>NZ_CP015402|3|3|2617345-2617453|CRISPRCasFinder
GGTGATACGATAGACCGGAGGGTGATGCAGCAGACA	GGATTGATACGACAGCAGCCTATGCAAATGCCCGGAT
GGTGATACGATAGACCAGAGGGTGATGCAGCAGACA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP015402.2\|WP_068961456.1\|2613440_2615069_-\|NADH-quinone-oxidoreductase-subunit-D	unknown	unknown	gnl\|CDD\|180385
NZ_CP015402.2\|WP_068961461.1\|2619825_2620788_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP015402.2\|WP_068961458.1\|2615760_2616135_-\|NADH-quinone-oxidoreductase-subunit-A	unknown	unknown	gnl\|CDD\|376344
NZ_CP015402.2\|WP_068961459.1\|2616574_2617105_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|369610
NZ_CP015402.2\|WP_068961467.1\|2628245_2628935_-\|tRNA-(guanosine(37)-N1)-methyltransferase-TrmD	unknown	unknown	gnl\|CDD\|234581
NZ_CP015402.2\|WP_068961452.1\|2609281_2610475_-\|F0F1-ATP-synthase-subunit-A	unknown	unknown	gnl\|CDD\|376294
NZ_CP015402.2\|WP_084274106.1\|2625877_2626468_-\|TonB-dependent-receptor-plug-domain-containing-protein	unknown	unknown	gnl\|CDD\|274948
NZ_CP015402.2\|WP_088294856.1\|2615125_2615749_-\|NADH-quinone-oxidoreductase-subunit-B	unknown	unknown	gnl\|CDD\|173277
NZ_CP015402.2\|WP_068960265.1\|2625126_2625891_+\|IS5-family-transposase	unknown	unknown	gnl\|CDD\|379129
NZ_CP015402.2\|WP_088294794.1\|2608976_2609228_-\|ATP-synthase-F0-subunit-C	unknown	unknown	gnl\|CDD\|349414
NZ_CP015402.2\|WP_068961455.1\|2612301_2613381_-\|NADH-quinone-oxidoreductase-subunit-NuoH	unknown	unknown	gnl\|CDD\|376297
NZ_CP015402.2\|WP_068961463.1\|2622423_2625027_-\|SusC/RagA-family-TonB-linked-outer-membrane-protein	unknown	unknown	gnl\|CDD\|274948
NZ_CP015402.2\|WP_068961460.1\|2618200_2619736_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP015402.2\|WP_068961454.1\|2610749_2612252_-\|F0F1-ATP-synthase-subunit-beta	unknown	unknown	gnl\|CDD\|236447
NZ_CP015402.2\|WP_068961462.1\|2620818_2622402_-\|RagB/SusD-family-nutrient-uptake-outer-membrane-protein	unknown	unknown	gnl\|CDD\|380159
NZ_CP015402.2\|WP_068961453.1\|2610476_2610710_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|213395
NZ_CP015402.2\|WP_068961466.1\|2627134_2628232_-\|DNA-replication-and-repair-protein-RecF	unknown	unknown	gnl\|CDD\|234608
NZ_CP015402.2\|WP_068961450.1\|2608459_2608957_-\|F0F1-ATP-synthase-subunit-B	unknown	unknown	gnl\|CDD\|184695
NZ_CP015402.2\|WP_068961465.1\|2626829_2627120_-\|DUF721-domain-containing-protein	unknown	unknown	gnl\|CDD\|377496
NZ_CP015402.2\|WP_088294793.1\|2629276_2632438_+\|leucine-rich-repeat-domain-containing-protein	unknown	unknown	gnl\|CDD\|380191

Protein	Function_ID	Function_description	E-value
NZ_CP015402.2\|WP_068961456.1\|2613440_2615069_-\|NADH-quinone-oxidoreductase-subunit-D	gnl\|CDD\|180385	PRK06075, PRK06075, NADH-quinone oxidoreductase subunit D.	3.22658e-156
NZ_CP015402.2\|WP_068961463.1\|2622423_2625027_-\|SusC/RagA-family-TonB-linked-outer-membrane-protein	gnl\|CDD\|274948	TIGR04056, OMP_RagA_SusC, TonB-linked outer membrane protein, SusC/RagA family. This model describes a distinctive clade among the TonB-linked outer membrane proteins (OMP). Members of this family are restricted to the Bacteriodetes lineage (except for Gemmatimonas aurantiaca T-27 from the novel phylum Gemmatimonadetes) and occur in high copy numbers, with over 100 members from Bacteroides thetaiotaomicron VPI-5482 alone. Published descriptions of members of this family are available for RagA from Porphyromonas gingivalis, SusC from Bacteroides thetaiotaomicron, and OmpW from Bacteroides caccae. Members form pairs with members of the SusD/RagB family (pfam07980). Transporter complexes including these outer membrane proteins are likely to import large degradation products of proteins (e.g. RagA) or carbohydrates (e.g. SusC) as nutrients, rather than siderophores. [Transport and binding proteins, Unknown substrate].	9.47691e-178
NZ_CP015402.2\|WP_068961458.1\|2615760_2616135_-\|NADH-quinone-oxidoreductase-subunit-A	gnl\|CDD\|376344	pfam00507, Oxidored_q4, NADH-ubiquinone/plastoquinone oxidoreductase, chain 3.	5.66473e-42
NZ_CP015402.2\|WP_068961459.1\|2616574_2617105_+\|hypothetical-protein	gnl\|CDD\|369610	pfam07946, DUF1682, Protein of unknown function (DUF1682). The members of this family are all hypothetical eukaryotic proteins of unknown function. One member is described as being an adipocyte-specific protein, but no evidence of this was found.	1.07402e-05
NZ_CP015402.2\|WP_068961467.1\|2628245_2628935_-\|tRNA-(guanosine(37)-N1)-methyltransferase-TrmD	gnl\|CDD\|234581	PRK00026, trmD, tRNA (guanine-N(1)-)-methyltransferase; Reviewed.	2.40936e-141
NZ_CP015402.2\|WP_068961452.1\|2609281_2610475_-\|F0F1-ATP-synthase-subunit-A	gnl\|CDD\|376294	pfam00119, ATP-synt_A, ATP synthase A chain.	5.4309e-64
NZ_CP015402.2\|WP_084274106.1\|2625877_2626468_-\|TonB-dependent-receptor-plug-domain-containing-protein	gnl\|CDD\|274948	TIGR04056, OMP_RagA_SusC, TonB-linked outer membrane protein, SusC/RagA family. This model describes a distinctive clade among the TonB-linked outer membrane proteins (OMP). Members of this family are restricted to the Bacteriodetes lineage (except for Gemmatimonas aurantiaca T-27 from the novel phylum Gemmatimonadetes) and occur in high copy numbers, with over 100 members from Bacteroides thetaiotaomicron VPI-5482 alone. Published descriptions of members of this family are available for RagA from Porphyromonas gingivalis, SusC from Bacteroides thetaiotaomicron, and OmpW from Bacteroides caccae. Members form pairs with members of the SusD/RagB family (pfam07980). Transporter complexes including these outer membrane proteins are likely to import large degradation products of proteins (e.g. RagA) or carbohydrates (e.g. SusC) as nutrients, rather than siderophores. [Transport and binding proteins, Unknown substrate].	9.92328e-66
NZ_CP015402.2\|WP_088294856.1\|2615125_2615749_-\|NADH-quinone-oxidoreductase-subunit-B	gnl\|CDD\|173277	PRK14816, PRK14816, NADH-quinone oxidoreductase subunit B.	5.73168e-119
NZ_CP015402.2\|WP_068960265.1\|2625126_2625891_+\|IS5-family-transposase	gnl\|CDD\|379129	pfam13340, DUF4096, Putative transposase of IS4/5 family (DUF4096).	2.69906e-21
NZ_CP015402.2\|WP_088294794.1\|2608976_2609228_-\|ATP-synthase-F0-subunit-C	gnl\|CDD\|349414	cd18121, ATP-synt_Fo_c, membrane-bound Fo complex of F-ATP synthase, subunit c. Subunit c (also called subunit 9, or proteolipid) of the Fo complex of F-ATP synthase. The F-ATP synthase (also called FoF1-ATPase) consists of two structural domains: the F1 (factor one) complex containing the soluble catalytic core, and the Fo (oligomycin sensitive factor) complex containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. F1 is composed of alpha, beta, gamma, delta, and epsilon subunits with a stoichiometry of 3:3:1:1:1, while Fo consists of the three subunits a, b, and c (1:2:10-14). An oligomeric ring of 10-14 c subunits (c-ring) make up the Fo rotor. The flux of protons though the ATPase channel (Fo) drives the rotation of the c-ring, which in turn is coupled to the rotation of the F1 complex gamma subunit rotor due to the permanent binding between the gamma and epsilon subunits of F1 and the c-ring of Fo. The F-ATP synthases are primarily found in the inner membranes of eukaryotic mitochondria, in the thylakoid membranes of chloroplasts, or in the plasma membranes of bacteria. The F-ATP synthases are the primary producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). Alternatively, under conditions of low driving force, ATP synthases function as ATPases, thus generating a transmembrane proton or Na(+) gradient at the expense of energy derived from ATP hydrolysis. This group also includes F-ATP synthase that has also been found in the archaea Methanosarcina acetivorans.	1.0892e-10
NZ_CP015402.2\|WP_068961455.1\|2612301_2613381_-\|NADH-quinone-oxidoreductase-subunit-NuoH	gnl\|CDD\|376297	pfam00146, NADHdh, NADH dehydrogenase.	4.50617e-128
NZ_CP015402.2\|WP_068961454.1\|2610749_2612252_-\|F0F1-ATP-synthase-subunit-beta	gnl\|CDD\|236447	PRK09280, PRK09280, F0F1 ATP synthase subunit beta; Validated.	0
NZ_CP015402.2\|WP_068961462.1\|2620818_2622402_-\|RagB/SusD-family-nutrient-uptake-outer-membrane-protein	gnl\|CDD\|380159	NF033071, SusD, starch-binding outer membrane lipoprotein SusD. SusD (Starch Uptake System D) is an outer membrane lipoprotein that binds starch and participates in a TonB-dependent nutrient uptake complex. Related proteins from similar TonB-dependent complexes that import other, usually multimeric nutrient substrates include RagB and NanU.	3.03197e-71
NZ_CP015402.2\|WP_068961453.1\|2610476_2610710_-\|hypothetical-protein	gnl\|CDD\|213395	cd12152, F1-ATPase_delta, mitochondrial ATP synthase delta subunit. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta, and epsilon subunits with a stoichiometry of 3:3:1:1:1. Alpha and beta subunit form the globular catalytic moiety, a hexameric ring of alternating subunits. Gamma, delta and epsilon subunits form a stalk, connecting F1 to F0, the integral membrane proton translocating domain. In bacteria, which is lacking a eukaryotic epsilon subunit homolog, this subunit is called the epsilon subunit.	5.88072e-18
NZ_CP015402.2\|WP_068961466.1\|2627134_2628232_-\|DNA-replication-and-repair-protein-RecF	gnl\|CDD\|234608	PRK00064, recF, recombination protein F; Reviewed.	1.37685e-92
NZ_CP015402.2\|WP_068961450.1\|2608459_2608957_-\|F0F1-ATP-synthase-subunit-B	gnl\|CDD\|184695	PRK14471, PRK14471, F0F1 ATP synthase subunit B; Provisional.	1.60255e-33
NZ_CP015402.2\|WP_068961465.1\|2626829_2627120_-\|DUF721-domain-containing-protein	gnl\|CDD\|377496	pfam05258, DUF721, Protein of unknown function (DUF721). This family contains several actinomycete proteins of unknown function.	7.58325e-16
NZ_CP015402.2\|WP_088294793.1\|2629276_2632438_+\|leucine-rich-repeat-domain-containing-protein	gnl\|CDD\|380191	NF033187, internalin_J, class 1 internalin InlJ. Internalins, as found in the intracellular human pathogen Listeria monocytogenes, are paralogous surface-anchored proteins with an N-terminal signal peptide, leucine-rich repeats, and a C-terminal LPXTG processing and cell surface anchoring site. See PMID:17764999 for a general discussion of internalins. Members of this family are internalin J (InlJ).	1.24602e-29

>NZ_CP015402.2|WP_068961459.1|2616574_2617105_+|hypothetical-protein
MKTRYKFDECWKEALRRLGDSAGHVEAQIRRYLEEGTEPDIADLNYYYEGFVAVWVLIKAQIDARKERNARARERRRMRRDAILEAEEAKKRRREAEAARKAEAARKAEAEQAEKQRIADERKARRREERLRKVAPRRDSISSSPAMTKPAPSPTPTFASRFRGPGIATPRVAGWQ
>NZ_CP015402.2|WP_068961458.1|2615760_2616135_-|NADH-quinone-oxidoreductase-subunit-A
MVSLIFGIQNSTLAVVGALTGVALVALALVLAGLISPRSFNPQKGEAYECGIPTRGESMAQFHIGYYLYAILFLMFDVETVFLYPWAVNMRALGTDGLLCIAVFFGILVLGLVYAWRKGALEWK
>NZ_CP015402.2|WP_088294856.1|2615125_2615749_-|NADH-quinone-oxidoreductase-subunit-B
MPYAEFKDNEYIESLVSELRANGTNVVVGSLDKLINWGRSNSIWPLTFATSCCGIEFIALGAARFDMARFGWEVARASPRQADFMMVAGTIVHRMAPVVRRLYDQLAEPKYVIACGGCAISGGPFKHSYHVVKGVGEVIPVDVYVPGCPPRPEAMIYGIMQLSRKIKVEKFFGGVNRQEKREAFLAARDAAAALVKEGVEQEKGMSE
>NZ_CP015402.2|WP_068961456.1|2613440_2615069_-|NADH-quinone-oxidoreductase-subunit-D
MANVQEHIARLFPEAVFEEGEWLLVNIPDAKWHTLAKTLKEDPELDFDYLVSLVGMDWTETLGVMYYLTSTRHGHHISVRVATDNREKPMLHSVSDLWHVANLYEREVYDYFGIIFINHPDMRRLFLRNDWVGYPLRKDYDASPETNPVRLDHEAVDDITYSYVEKPDGTIVKEKRTVFAPEDFVVNIGPQHPATHGVLRFRTAVDGETIKKIDLYLGYIHRGIEKLCEGLGYMQTLHFTDRLDYLSAQQNRHCLCLCIEKAMGLEVPRRAQVIRVMMDELMRISSHLLFMGTFCMDLGATTMLFYTLRERERILDIFEKTCGARMTFNYHCIGGVIDDLDKDFVDDVKKLLEIMPKAIKEYDTIFTGNVIAHNRMKGVGVLSKEDVISYGATGPVGRASGWACDVRKTAPYGIYSELQFDEITLPEGDSMARYLVRVEEIKQSCRILEQLVDNIPDGDICAKVPKIIKLPEGHWFQQVEASRGAFGVYIESHGDQKPWRVKFNSPCMNLAGIVPHAAEGGKIADLITIGGTFDYVVPDIDR
>NZ_CP015402.2|WP_068961455.1|2612301_2613381_-|NADH-quinone-oxidoreductase-subunit-NuoH
MLELSHGAEWLNQWLLSWCAPWVAVTIECVLIGVLLLLAYSVLALFYIYFERKVCAAFQCRRGPNRVGPWGVLQSVADMFKILIKELISLNHIDKFLFALAPYLVILASMLCFSMLPWGSGLQIVDFNIGIFFLLAVSSIGVLGILLAGWSSNNKFTLIGALRSGAQMVSYELSLGLSVITMVAFAGTMSISEICQMQSDGMWFIFSGHIPAVIAFVIFIIAGTAETNRGPFDLPEAESELTAGYHTEYSGIHFGFFYLAEYLNLFIVSGVAALLFFGGWAPLHIPGWDAFNGVMDWIPSTIWFIAKAIAISFIIIWFKWTFPRLRIDQLLALEWKYLLPINLVNLVLMVLVVCFGLHF
>NZ_CP015402.2|WP_068961454.1|2610749_2612252_-|F0F1-ATP-synthase-subunit-beta
MSDKFGTVAQVIGPVVDVTFEGEDNLVPPIYTALRVPKDDGTDLILEVEQHIGEDTVRCVAMESTDGLQRGVRVENLGRPIAVPTGDQVKGRLLNVLGDAIDHLPELNRESLRPIHQPAPAFDDLTIGTEILYTGIKVIDLLEPYSKGGKIGLFGGAGVGKTVLIMELINNIAKGHNGFSVFTGVGERTREGNDLLREMIESGVMKYGEKFTEGMEKGEWNLADVDMKQVAESQAALVFGQMNEPPGARLRVALTGLTVAEQFRDQDGGGKDILLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLASEMGALQERITSTKQGSITSVQAIYVPADDLTDPAPATTFSFLDATTVLSRKISELGIYPAVDPLESTSRILDPHIIGEDHYNTAQAVKQLLQKYNELQDIIAILGVDELSDEDKLVVARARRAQRFLSQPFFVAEQFTGLPGVMVPLSETIRGFKMILSGEMDEYPEQAFLNVGTIDDAIAKGKKMLAEVK
>NZ_CP015402.2|WP_068961453.1|2610476_2610710_-|hypothetical-protein
MVLKVISAQDVLFEGEVGKVSLPGAEGTFMVLPGHASLISTLVPGPVVYDHDGHSARIDVAGGIVDVDNDIISVCIY
>NZ_CP015402.2|WP_068961452.1|2609281_2610475_-|F0F1-ATP-synthase-subunit-A
MKRTILLLALLLAVLLPAPLSLIADEAGVRAEAQAEEAESRSEEKKIDPKEIIFEHLGDGYGWEVPFCHDVRIPLPVIVRDYQGDWHCFSSSRIGHGHSYTVTDSDGAEMTFRLGGHDSKWHNKLVGMRPEVVDGQTQMVEYRPLDFSITKNVCAIFIACLLVMWMVLDVAAWYRKKGYTAPRRATGAIEALIEFIYYGVIKPTLGAKSRKFGPYLLTVFFFILVANLLGLMVIFPGGANITGNIAVTLVLSLITFLIVNIFGTKHYWKEVFWPDVPLWLKFPIPIMPVIELFGVFTKPAALTVRLFANMMGGHIIVIVLTLLIFILGALGAAAAGGTLVVSLIFSVFMLLIDVLVSFIQAYVFTMLSTVFIGLAQEDGHHGKDAHEVPAAPTTTRS
>NZ_CP015402.2|WP_088294794.1|2608976_2609228_-|ATP-synthase-F0-subunit-C
MLTALIIAAIDAGLKGIGACLGAAIAAIGAGIGIGKIGGAAMEAIARQPEATGDIRSNMIVIAALIEGVALFAVIVCVLAFFL
>NZ_CP015402.2|WP_068961450.1|2608459_2608957_-|F0F1-ATP-synthase-subunit-B
MELFTPEFGLVFWMFVAFAILFFVLWKWGWPAIMKSIDDRADLIDKGVEYAQNAKEQLDNARQEASKYIDEARKQQAEILREADRMKTEIIEEARAAASKEAQKVMDAAKVSIEQERKEARQQFRDEVTSFALDIATKVVRGQMADRKAQTKLVDSLLDEMETNN
>NZ_CP015402.2|WP_068961460.1|2618200_2619736_-|hypothetical-protein
MKLRSNIWLLGVLAVGFAACSDDEYTGEPQVTPQPDVLPADAVSGTDVYAPGSLFDVNAEKTDLAKMMPVLNISRLDEQPAGYDLQVSMLVAKSEADLSNPAARIDTVLTELPAQSGALRSLGLSAEAFNVIFHRLYGPSDAAQPMAVRFDAYSVKDQTSALLGTVGTTGTVSFKPVQYAYAPENSYWIVNADDPSVRYEMKNSGASVWNDPKFSAVFDVDLEGINWKVVPGSMVANPVAAQCFGPEVAEDTEGSLVLGGQPGTINVVQKEPYMISINITNPNDNYTELRPTYDIKLAYEVVYILGNAQGGDVAPAVLTTKDYVNYGGFVAFSGWGCKMTDKPSWGGAEWANFAFTVSEDGKSYTGTVGSGSSSGNIEGLPDGIYAWVFNILSGEVTATPIKQFELIGTATGGWGDADVQVLQPATDAADCATFSADINFTSTGEFKLRGQANPAAPNWAFSLGGELDNLIWDGPNTNFTGAVGTHKVTISFNVVKEGAFADAPRLHYVIE
>NZ_CP015402.2|WP_068961461.1|2619825_2620788_-|hypothetical-protein
MKKITSYLALAAVAMAFIACSDDTEPKADYPTNHDFLNIPVMANQTIVLETAGSVDFTLSQPDYGVAIVPDYALQISLDPSFEKLPSEIASVAPLVYSAENERAYYQLPVSSQSVSFAASAKDIADGISAMLGYDDIEQYKGREDKCYTGPLYCRVLSTIPTANPGTYDKYSILSNVVTLATVIGYPTVRQPGWIYLVGAPEGWVGPTPANAEHYKDWMLFESKDGIDSKIYHGTFDIPAGKFQFRFYTLLDNWEDNSWGPQKDDAPVAIKMTDGVFSGDIMEGKGSFDIADWAGGWVKMTVNLKAKNVTFKAVSGPDAE
>NZ_CP015402.2|WP_068961462.1|2620818_2622402_-|RagB/SusD-family-nutrient-uptake-outer-membrane-protein
MKLNKIKYTVLACAALAVGATSCVGDLDITPKDPSKRTDLTNGLEYYNYFAQIYAGLTIAGVNNNSDISVDDGGAGVYTRQLWNLQELCTDEAFIGKNWNDAGLDELDYCTWSPDNHWLYEAMSRFTFQINLCNEFLRTIDKAASVENPIPADEIALMKREARVVRALAYYHMMDCFGRGPWTTEDSPIGVTPPTETRAQMFPKVVADLEDAINGGIPKASDQVYGRVSREGALMLLAKLYINAEVYTGTPMYDKCAAACQQIVSTINTLVGENDGKEYKYLFCATNDRYARGGEILWAIPQDNSYTQSYGGTTYLGMGAYNANIGADLQKRLGIDGTGWGGPRVRPELGSTITKSDGRWLFWDEGLSNDLSDIGDWGMPGGSGLMCIKYVYTPEENYYNTDGSVKVNTFNSADFPLFRLADTFLMLAECQLKGVSCNGQSYFDRVRARAGLAPAALNADNLLDERMRELYWEGHRRTDLIRFGKFTTANWSWKGGTEFGVGAISADRNLYAIPTQYVSTLGQNPGY
>NZ_CP015402.2|WP_068961463.1|2622423_2625027_-|SusC/RagA-family-TonB-linked-outer-membrane-protein
MKHPLIVIDGVPMDTKGTLGSSNPLSLVNPESIESMTILKDASATAIFGSRASNGVIIITTKKGSSGAPTVNFAANMYINTPRNYMDMMSASQFRNFIINEYGEGSSQANALGNTSTDWQKEVLRTTVSSDYNLSVGGTYRALPYRVSVSYTNNNGIVETTKMDRATFGLNLSPKFFNGLLSINANLRGAYINNRFYEESALGSAVSFNPTLPVYAPDGNIFLNYTTYAGTAVAGPDTPGSSINTLKALNPVSLLKEYDSQSKVFQSIGNLQIDGALPWLPELHANLNLGYDISRSNVDNIHNAYSPMSWKNGSDLPYVGDVLVAPDQIGSGKYDIKSTRDGQGRTFHEHQVKANLLLDFYLNYKKEFESIRSNLDVTAGYSWQSFRWQGNSLTRINSGEYNNFQAYPTSYYRNDLALVSFFGRLNYGFMDKYLLTVTVRRDGTSRFSKDHRWGTFPSVALAWRLIDENFMASLRPVLSDLKLRVGYGVTGQQDLGDDFFPYLPVYVIGNNGNLEPNTTSYPNPIPESLRGQYGSDYAFINVLKPNGYNTDIKWEETHTWNVGVDFGFLNNRINGSLDFYKRKTKDLLTFTTVPAGSNLTNALNMNIGDLENTGIEFTVSTRPIVTQDLTWSSDFNIAWNQNKITKLTAGNDPDFFIAAGEGISAGTGGTVQAHMVGHPAYSYYVYQQVYDQDGNPIEGQYVDRNGDGQITEADKYLYHSRDPKVVLTWSNSVNYKNWDFGIVLRANIGNWVYNDFEASNVSKSSTASLPLSNLMANRFIFNDLGVKGAMSDYFVRNASFLRCDNITVGYTWPSLINDALRLRLYGAVQNPFVITKYNGLDPEVFSGVDKNIYPRPITVSLGVVASF
>NZ_CP015402.2|WP_068960265.1|2625126_2625891_+|IS5-family-transposase
MYTSDLTEAQKAFIKETIPMDNWTSKYDFFLVFDAILYVDKTGCQWRNLPHDFPAWQTVYYYFRAWSAIGEFKNLLDSLVAEVRFQEGQTPEPSVAVVDAQSVRAASYPSPKGFDGNKKVKGIKRQIAVDENGHLLDVKTTTANIHDSKGGLMLLALLAASHPVIKKILADRGYRGDLIELVRNTFGMNVEITLSGSSDGKFIPAKGRWVAERSISWLDNFRRLCRNYEDTLEVARQMVIIAGVAMLLNRLTAN
>NZ_CP015402.2|WP_084274106.1|2625877_2626468_-|TonB-dependent-receptor-plug-domain-containing-protein
MKNICFQMNRKAWLVAIMVLCLSFPALAQKITVSGTVTDKTGEPLIGASVLAKGTQQGTATDFDGNYRIDVDANATLVFSYVGYDTQNVAVNGRTTIDVVLSENSVMLNEVVAIGYGTVKKSDATGAVSAIKPSEVQAGLSTSAQDLLVGRSPGVVVTTAGGQPEGKANIQIRGGASLSASNEPLRGCFITIVNLL
>NZ_CP015402.2|WP_068961465.1|2626829_2627120_-|DUF721-domain-containing-protein
MKRTDPKSVNQIIDEYLSHEGLTTTVDEQRAAYLWPEVVGHVINRYTTRRYVDKGVLHVYISSAPLKQELSFCRERLTADINAAIGRPVLTGIVIH
>NZ_CP015402.2|WP_068961466.1|2627134_2628232_-|DNA-replication-and-repair-protein-RecF
MILKEIHINGFKNIAEASLCFSPKVNALLGNNGMGKSNLLDAIYFLSFCKSFSGMTDAQIIRRGDDFAMVRATYLRHGIDEQLSLGITPGRRKSLKRQGKEYQRLSAHIGAFPLVMSSPQDVDIIRGSSDERRRLMDMVISQTDPVYLDALIRYGRALDQRNRMLRDGIADTSLYAAVEMQMDIAASAIHQSRAAWTERLTSIFSRYYSAIAGDGAEQVELRYDSSLNSGATLSSLLDSARRRDEAVRHTSVGPHRDDLEMLIDGMPMRRAASQGQCKTYAIALRLAQYDFLRENVGMRPLLLLDDIFDKLDATRVERIMELVAGAGFGQIFITDTNRTHLDGIIRRTGSDYSLWNVDSGVFSRL
>NZ_CP015402.2|WP_068961467.1|2628245_2628935_-|tRNA-(guanosine(37)-N1)-methyltransferase-TrmD
MRIDIITVLPEMLESPLGCSILKRAQEKGLVEIKVHNLRDYTTNRYRKVDDYPFGGEAGMVMQIEPVDRAISSLKAERHYDEVIFTSPDGEQLTQPMANSMSMLDNIIILCGHYKGVDQRIREHLVTREITIGDYVLTGGEMPALIITDAIVRLIPGAIGDEQSALSDSFQDGLLAPPIYTRPAEYKGWRVPDILLSGHQARIDEWRHEQAIARTRSLRPNLLKDMGLD
>NZ_CP015402.2|WP_088294793.1|2629276_2632438_+|leucine-rich-repeat-domain-containing-protein
MYERLYARIAGIAAIATMAAGASADAAVRYVKAGAESGDGLSWATAMTDLQDAIDASEAGDEVWIAGGTYRPTRIYDSRVGNSRTFVVKDGVSIYGGFAGTETAKAERAVKAGGRPWEMINETILDGDDDVADVWEREITAGTTYRNTWKKEDSQIPGTQNNATHLLYQPEVIRQHTVIDGLTIKGGNANNYRVKASGGGIYVRGNVSISACRFYENSCYLRNEAYINAAGGAVYLNGAGDASVSDCHFARNYAYASYTMGIGGGLYAQNARVEGCLFEDCVGEDAGGAVYQSGGSLKNCHITTSYSSAGGGLYTIGVLDNNDNVQYAATAEDVTVTDCQGLNGGGINVATGSTLTHARVWNCKADATEYGESAGGSGGGIFLQGGTALGCVVYNNMAFRGAGICIRSGKAANCTVQHNANRKADPAVSNIAEWPESGAMKGVSNCIGNPDADASNFTAPSTFTGLATTDGQKASLASADWSLRAGSEFIDAGTSTDGLQEATDMAGNPRVMGSSIDVGAYEYVSEAAPNASLTFNGKNEEVIIYFRTTDGNFKVKVGDDMYTVDNVKPNADKGVALPLGGSTVAAIYAEGLSRLRIEGQGLTAIDLSNAPELTMLQLGKNELSELDVTRNTKLTGIYAEDNNIAALDISNCTALRVLTMYGNRLNGTLDLSGMSVLSSVDIDDNNVSELLLPAHAYLVEVNCENNALTDIDIANRSGLRDINLYGNRLTSLDLTGLSALEDLYAGKNEITEVKGLADCKAIETLNVSGNRLTGIDISVAPTITGLYLYNNELTALDLSGNPNISWMNVSDNHIGALDISRLTNLRLLHANNNALTELDLSNSPYCSQLTVGGNRIGKLDLSKLTALYWLKADGNNLSELDVTANTYLSLLECGNNRLTALDISKNTMLRRLAAENNMLTTLDIAANKDLCGISVQGNAMETAAINNMIANLIDVSDMTPLEGSEWITMLDISSMPGTAGANVAAAESKGWNVTANGGSGIDSIDINGAEVAAVTFYTLSGVELGPETPSAGCYIARMTLTDGRTVARKYFVK

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Crispr_ID: NZ_CP015402_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP015402_4

3151518-3151594

Orphan

Consensus_repeat	Method
AATTGCATCCGTGGGGCGATGGCC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP015402_4

>merge|NZ_CP015402|4|3151518-3151594|CRISPRCasFinder
AATTGCATCCGTGGGGCGATGGCCCGGGGGAGTACAATTGTCTTTTTTGGGGGAATTGCATCCGTGGGGGCGATGGC

>NZ_CP015402|4|4|3151518-3151594|CRISPRCasFinder
AATTGCATCCGTGGGGCGATGGCC	CGGGGGAGTACAATTGTCTTTTTTGGGGG
AATTGCATCCGTGGGGGCGATGGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP015402.2\|WP_068961835.1\|3143286_3144330_-\|23S-rRNA-(adenine(2503)-C(2))-methyltransferase-RlmN	unknown	unknown	gnl\|CDD\|237721
NZ_CP015402.2\|WP_068962169.1\|3148371_3149181_-\|outer-membrane-protein-assembly-factor-BamD	unknown	unknown	gnl\|CDD\|274513
NZ_CP015402.2\|WP_068961842.1\|3155168_3156530_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|275342
NZ_CP015402.2\|WP_084274247.1\|3162201_3162855_-\|Bax-inhibitor-1/YccA-family-protein	unknown	unknown	gnl\|CDD\|198414
NZ_CP015402.2\|WP_068961847.1\|3164898_3165885_-\|DUF4974-domain-containing-protein	unknown	unknown	gnl\|CDD\|226235
NZ_CP015402.2\|WP_068961844.1\|3158285_3161615_-\|SusC/RagA-family-TonB-linked-outer-membrane-protein	unknown	unknown	gnl\|CDD\|274948
NZ_CP015402.2\|WP_084274154.1\|3165953_3166658_-\|sigma-70-family-RNA-polymerase-sigma-factor	unknown	unknown	gnl\|CDD\|274376
NZ_CP015402.2\|WP_068961846.1\|3163034_3164819_-\|arginine--tRNA-ligase	unknown	unknown	gnl\|CDD\|223097
NZ_CP015402.2\|WP_084274156.1\|3166772_3170312_+\|TonB-dependent-receptor	unknown	unknown	gnl\|CDD\|274948
NZ_CP015402.2\|WP_068961837.1\|3147991_3148324_-\|DNA-directed-RNA-polymerase-subunit-omega	unknown	unknown	gnl\|CDD\|376482
NZ_CP015402.2\|WP_068961841.1\|3153691_3155110_-\|DUF4302-domain-containing-protein	unknown	unknown	gnl\|CDD\|372921
NZ_CP015402.2\|WP_068961833.1\|3139894_3142300_+\|DUF5110-domain-containing-protein	unknown	unknown	gnl\|CDD\|269884
NZ_CP015402.2\|WP_068961834.1\|3142652_3143273_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP015402.2\|WP_068961843.1\|3156557_3158264_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|373012
NZ_CP015402.2\|WP_133165745.1\|3138405_3139407_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP015402.2\|WP_084274153.1\|3149899_3150409_-\|IS200/IS605-family-transposase	unknown	unknown	gnl\|CDD\|376616
NZ_CP015402.2\|WP_068960594.1\|3137345_3138329_+\|IS30-family-transposase	unknown	unknown	gnl\|CDD\|225382
NZ_CP015402.2\|WP_068961836.1\|3144666_3146844_-\|cation:proton-antiporter	unknown	unknown	gnl\|CDD\|223551
NZ_CP015402.2\|WP_068961840.1\|3151681_3153610_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP015402.2\|WP_068962168.1\|3147609_3147885_-\|30S-ribosomal-protein-S15	unknown	unknown	gnl\|CDD\|180170

Protein	Function_ID	Function_description	E-value
NZ_CP015402.2\|WP_068961835.1\|3143286_3144330_-\|23S-rRNA-(adenine(2503)-C(2))-methyltransferase-RlmN	gnl\|CDD\|237721	PRK14466, PRK14466, 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN.	0
NZ_CP015402.2\|WP_068962169.1\|3148371_3149181_-\|outer-membrane-protein-assembly-factor-BamD	gnl\|CDD\|274513	TIGR03302, OM_YfiO, outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). [Protein fate, Protein and peptide secretion and trafficking].	1.4006e-15
NZ_CP015402.2\|WP_068961842.1\|3155168_3156530_-\|hypothetical-protein	gnl\|CDD\|275342	TIGR04549, LP_HExxH_w_tonB, substrate import-associated zinc metallohydrolase lipoprotein. Members of this family are lipoproteins with the typical zinc metallohydrolase HExxH motif and additional similarities to a better-documented zinc peptidase family, pfam06167. The seed alignment begins immediately after the lipoprotein motif Cys residue. Up to five members of this protein family occur per genome, in the context of certain gene pairs related to RagA and RagB, or to SusC and SusD. Those gene pairs, like the present family, are restricted to the Bacteriodetes, may number up to 100 pairs per genome, and are linked to TonB-dependent uptake of biopolymer-derived nutrients such as glycans. A possible function for this lipoprotein is to hydrolyse larger molecules to prepare substrates for import and utilization. [Unknown function, Enzymes of unknown specificity].	4.44063e-91
NZ_CP015402.2\|WP_084274247.1\|3162201_3162855_-\|Bax-inhibitor-1/YccA-family-protein	gnl\|CDD\|198414	cd10432, BI-1-like_bacterial, Bacterial BAX inhibitor (BI)-1/YccA-like proteins. This family is comprised of bacterial relatives of the mammalian members of the BAX inhibitor (BI)-1 like family of small transmembrane proteins, which have been shown to have an antiapoptotic effect either by stimulating the antiapoptotic function of Bcl-2, a well-characterized oncogene, or by inhibiting the proapoptotic effect of Bax, another member of the Bcl-2 family. In plants, BI-1 like proteins play a role in pathogen resistance. A characterized prokaryotic member, Escherichia coli YccA, has been shown to interact with ATP-dependent protease FtsH, which degrades abnormal membrane proteins as part of a quality control mechanism to keep the integrity of biological membranes.	6.11003e-57
NZ_CP015402.2\|WP_068961847.1\|3164898_3165885_-\|DUF4974-domain-containing-protein	gnl\|CDD\|226235	COG3712, FecR, periplasmic ferric-dicitrate binding protein FecR, regulates iron transport through sigma-19 [Inorganic ion transport and metabolism, Signal transduction mechanisms].	5.59342e-26
NZ_CP015402.2\|WP_068961844.1\|3158285_3161615_-\|SusC/RagA-family-TonB-linked-outer-membrane-protein	gnl\|CDD\|274948	TIGR04056, OMP_RagA_SusC, TonB-linked outer membrane protein, SusC/RagA family. This model describes a distinctive clade among the TonB-linked outer membrane proteins (OMP). Members of this family are restricted to the Bacteriodetes lineage (except for Gemmatimonas aurantiaca T-27 from the novel phylum Gemmatimonadetes) and occur in high copy numbers, with over 100 members from Bacteroides thetaiotaomicron VPI-5482 alone. Published descriptions of members of this family are available for RagA from Porphyromonas gingivalis, SusC from Bacteroides thetaiotaomicron, and OmpW from Bacteroides caccae. Members form pairs with members of the SusD/RagB family (pfam07980). Transporter complexes including these outer membrane proteins are likely to import large degradation products of proteins (e.g. RagA) or carbohydrates (e.g. SusC) as nutrients, rather than siderophores. [Transport and binding proteins, Unknown substrate].	0
NZ_CP015402.2\|WP_084274154.1\|3165953_3166658_-\|sigma-70-family-RNA-polymerase-sigma-factor	gnl\|CDD\|274376	TIGR02985, Sig70_bacteroi1, RNA polymerase sigma-70 factor, Bacteroides expansion family 1. This group of sigma factors are members of the sigma-70 family (TIGR02937) and are found primarily in the genus Bacteroides. This family appears to have resulted from a lineage-specific expansion as B. thetaiotaomicron VPI-5482, Bacteroides forsythus ATCC 43037, Bacteroides fragilis YCH46 and Bacteroides fragilis NCTC 9343 contain 25, 12, 24 and 23 members, respectively. There are currentlyonly two known members of this family outside of the Bacteroides, in Rhodopseudomonas and Bradyrhizobium.	1.2639e-33
NZ_CP015402.2\|WP_068961837.1\|3147991_3148324_-\|DNA-directed-RNA-polymerase-subunit-omega	gnl\|CDD\|376482	pfam01192, RNA_pol_Rpb6, RNA polymerase Rpb6. Rpb6 is an essential subunit in the eukaryotic polymerases Pol I, II and III. This family also contains the bacterial equivalent to Rpb6, the omega subunit. Rpb6 and omega are structurally conserved and both function in polymerase assembly.	1.91138e-05
NZ_CP015402.2\|WP_068961846.1\|3163034_3164819_-\|arginine--tRNA-ligase	gnl\|CDD\|223097	COG0018, ArgS, Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis].	8.74762e-158
NZ_CP015402.2\|WP_068961833.1\|3139894_3142300_+\|DUF5110-domain-containing-protein	gnl\|CDD\|269884	cd06598, GH31_transferase_CtsZ, CtsZ (cyclic tetrasaccharide-synthesizing enzyme Z)-like. CtsZ is a bacterial 6-alpha-glucosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsY. CtsZ and CtsY both have a glycosyl hydrolase family 31 (GH31) catalytic domain; CtsY belongs to a different subfamily. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.	4.90602e-146
NZ_CP015402.2\|WP_084274156.1\|3166772_3170312_+\|TonB-dependent-receptor	gnl\|CDD\|274948	TIGR04056, OMP_RagA_SusC, TonB-linked outer membrane protein, SusC/RagA family. This model describes a distinctive clade among the TonB-linked outer membrane proteins (OMP). Members of this family are restricted to the Bacteriodetes lineage (except for Gemmatimonas aurantiaca T-27 from the novel phylum Gemmatimonadetes) and occur in high copy numbers, with over 100 members from Bacteroides thetaiotaomicron VPI-5482 alone. Published descriptions of members of this family are available for RagA from Porphyromonas gingivalis, SusC from Bacteroides thetaiotaomicron, and OmpW from Bacteroides caccae. Members form pairs with members of the SusD/RagB family (pfam07980). Transporter complexes including these outer membrane proteins are likely to import large degradation products of proteins (e.g. RagA) or carbohydrates (e.g. SusC) as nutrients, rather than siderophores. [Transport and binding proteins, Unknown substrate].	0
NZ_CP015402.2\|WP_068961843.1\|3156557_3158264_-\|hypothetical-protein	gnl\|CDD\|373012	pfam14322, SusD-like_3, Starch-binding associating with outer membrane. SusD is a secreted polysaccharide-binding protein with an N-terminal lipid moiety that allows it to associate with the outer membrane. SusD probably mediates xyloglucan-binding prior to xyloglucan transport in the periplasm for degradation. This domain is found N-terminal to pfam07980.	4.70497e-28
NZ_CP015402.2\|WP_068961841.1\|3153691_3155110_-\|DUF4302-domain-containing-protein	gnl\|CDD\|372921	pfam14135, DUF4302, Domain of unknown function (DUF4302). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 344 and 443 amino acids in length. There are two completely conserved residues (R and L) that may be functionally important.	4.19141e-48
NZ_CP015402.2\|WP_084274153.1\|3149899_3150409_-\|IS200/IS605-family-transposase	gnl\|CDD\|376616	pfam01797, Y1_Tnp, Transposase IS200 like. Transposases are needed for efficient transposition of the insertion sequence or transposon DNA. This family includes transposases for IS200 from E. coli.	1.28082e-21
NZ_CP015402.2\|WP_068960594.1\|3137345_3138329_+\|IS30-family-transposase	gnl\|CDD\|225382	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair].	1.44683e-60
NZ_CP015402.2\|WP_068961836.1\|3144666_3146844_-\|cation:proton-antiporter	gnl\|CDD\|223551	COG0475, KefB, Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism].	1.39589e-61
NZ_CP015402.2\|WP_068962168.1\|3147609_3147885_-\|30S-ribosomal-protein-S15	gnl\|CDD\|180170	PRK05626, rpsO, 30S ribosomal protein S15; Reviewed.	1.01755e-38

>NZ_CP015402.2|WP_084274153.1|3149899_3150409_-|IS200/IS605-family-transposase
MQTFSHPKFNHEIYGMSNTYTKIFLHIIFAVKGRESLLPPTIRNRVHAYIAETLRRLGHHPIKVGGVQNHVHILVDYSPSQSIPEMVRDTKASTTKFINSQRFIPFLFAWQRGYACFSHSPSQIPDVKSYVEHQNEHHNNMSLRDEIVKLYTRYGIEYNEEYIFEDHTN
>NZ_CP015402.2|WP_068962169.1|3148371_3149181_-|outer-membrane-protein-assembly-factor-BamD
MSRLLTIILSAVIALMATSCGEYQRMLKSADADARLDFARRAFEQKKYTQAATVLTDIVTAFKGTAKAEESLYLLALSHYENKDYETSGAYFKTYYSRYPKGKYAEMARFYAGYGYYLDSPEPQLDQSGTIKAIEELQAFLDYFPKSDKVPVAQQAIFELQDKLTLKELQNAQLYYNLGTYMGNNYESCVIVARNAIKNYPYSKYKEDLEMLILKSRYQEADQSVEEKKSDRFRDVIDEYYSFTNNWPESRYRREADNILKIAQKYVKE
>NZ_CP015402.2|WP_068961837.1|3147991_3148324_-|DNA-directed-RNA-polymerase-subunit-omega
MDYKKTNAPLNTTTRDLVKMAEPTGNIYETVCIIAKRSNQIAGEMKHDLEKKLQEFASLNDNLEEISENREQIEISRYYEKLPKPTLIATQEYLEDKIFWRNPATDKNLD
>NZ_CP015402.2|WP_068962168.1|3147609_3147885_-|30S-ribosomal-protein-S15
MHLNSEEKVNIFEKYGKGKTDTGSPEAQIALFSVRIAHLTEHLKSNHKDYTTARALKALVGKRRRLLDYLIKKDITRYRAIIAQKELGIRK
>NZ_CP015402.2|WP_068961836.1|3144666_3146844_-|cation:proton-antiporter
MSRIAAITPLVTDPVMIFFIVLVIILLAPILLNRLKIPHIIGMIVAGVVIGPYGIGLLSRDASFEIFGQVGILYLMFLAGIEIDMYHLKKNMSKGLTFGLYTFFVPMILGTLTSVWLLGYSWLTSILLASMYASHTLIAYPIVSRLGLNKSPAVIITIAGTIVTVLGALIVLAAIAGIWEDGSFSPLGLLALLGRLVIYCLVIVYLFPRLTRWFFKRYSEPVTQFIYVLAMVFLASYSAKAIGLESVLGAFYAGLVLNRYIPNMSPLMNRIEFVGNAIFIPYFLIGVGMLINVHVVVSSWQTLYVAAVMSAIATICKWLAAWFTQLTYRMSRIDRSMIFGLSNAQAAATLAAVMIGYRMGIFNEDVLNGTIVMILVTCTISSIITERAATRMRLEMLSDDASSTESMRGRPSNMLISVSNPVTASSLVDFAVLMHNNSRDSRLYALNIITDDTPGHRAIGRTCLEQAQQAAAAMDLRIDPIERFDLNVTAGLVNTIKERDISEVIIGMHRKATVVDSFFGSKIEQLIKSTNKMVLITRCFIPVNAVTRIVVVVPPKAEFETGFAQWVNSLARLTRQIGCRIIFCCNTDTRRCVSGVLIRDRFEIRSEYRDVEDWDDFVLLANHILDDDLFVIINARRSSVSFSSSMDELPMFLQKYFARNNLVVIYPEQFGAAESANVPSAIDPLSSDFMATPSSLWVRIAAFYRRLILFRKRFTHRKRIKKIDL
>NZ_CP015402.2|WP_068961835.1|3143286_3144330_-|23S-rRNA-(adenine(2503)-C(2))-methyltransferase-RlmN
MEATQTTLTPLIGMTLPQLRDVAAECGMPPFAAGQMAKWLYEKRAASIDDMTNLSKTSRATLARRYTIGRTAPKAEARSVDGTVKYLFEGVGGRDIEAVYIPDRDRATLCVSSQAGCRMGCRFCMTGRQGFHGNLTAGQIINQVLSIPESATLTNIVFMGMGEPMDNLDPVLGAIDILTSSWGLAWSPKRITVSSIGKIDTLRTLLDTTKVHIAISVHSPFAEERASLMPVEKAYPLKDVLQLLRGYDFAHQRRLSVEYIMWGGLNDNMRHAQALARLLRGLDVRVNLIRFHAIPDSDLRTSPADTMVAFRDRLNELGITATIRTSRGEDIAAACGMLAGKAREQQP
>NZ_CP015402.2|WP_068961834.1|3142652_3143273_+|hypothetical-protein
MSKIESILAGALVSGAALLMASCSDNARFVGTWNGISPVDMSVRMPDVVRASSVVSVDFTLNQHKTGGPIGLSGKLDVVKSLPGDSASSGVPYQLSIPAMASVRGVWTYDIDDDDDLLVNLDMSSLKVTVDREGVRWLGNVPSAGADSLAAVTAAICERELSHAAYTDFSRFTVINDVDVDKSGSKMSFEIHSPEAEIYFVKAATE
>NZ_CP015402.2|WP_068961833.1|3139894_3142300_+|DUF5110-domain-containing-protein
MRRIARIFNVVSVIFLGYASAVAVTPDAVNGTVSTSLPDGRTIVVRAYSPDIIRVENFGAGEAPSRTQAGQLGVAPFDGVVERTADEAVIRTTSGLSAIIDLKSGAVSFDVDTTPATKRLLYDSGVRSNDGGSVSLSLIPEGGGTFYGAGERGHSLKLNGDTLVMYNRQNYGYEGHDPRLRQMNITVPMFVSTEGYGVLFDDHAPATLVMSDPIVYSSEQESPVSYYFIYGGGTVAGVTEEYSRLTGRQDLPPFWALGYITSKYGYKSQQETVGVIDTLKREGFPVDGVVLDLYWFGKETDMGKLAWDTVSWPDHRGMLAGLKARGVNTVLISEPYINKKGAIDNYNLLAEGGMLTRDKDGNVHDVTTWVGDAGMFDVANPATRRWLRERYRALTDEGVGGWWGDLGEPEVHPETIVHSNGMTAREYHNVYGNEWSKIIYDMYREEYPGRRLMTMMRGGTAGLQRYSVFPWSTDVARTWGGLEPQVRIMLNSGLSGLGYMSHDVGGFAIVDTTRVTDPELYVRWLQLGTFSPVLRTHAQKMPEPYNYPDQRDIILDLVRERYRWLPYNYTLAYENASRGYPFVRPLNFADTSSAPDSVSDQYMWGEEVMVAPVTAQSATRRRVVFPTGVWIDYNHPEKSPVAGLSESVVDAPIEEIPMFVRSGSFIPQAMYPMDNVGDYDPSRYTVLYYPRGDGESRYTMYDDDRMSSESLRDGEYALIDFAGKVDGRHAAVRVVQSGYYEGMPDERELTFVLPGINSGDVASVKLDGKACAVGKSEEGYATFVMRLRGDTPAVADITLRR
>NZ_CP015402.2|WP_133165745.1|3138405_3139407_-|hypothetical-protein
MHKLRLTTALSCIGIISAMIIPVKAMPTDTTSTSVAAIGHTMPDGPSEWAAPDVVLDGITIAESYLKGKKSPDTNEDGIIVTPAHIAVIDGATSKSSFTLQDKKSGRLAMEIVCEAIAALPPEATMHEAMEHITSAIARFYRANGLEMEIKASPNKRFVANGVIYSISRREIWQIGDCQLRYADTYSRNEKEIDLIMSRARAAMNEAALASGMTREEIMRDDPGRTFIRPFLERQALLQNNHATELQYSFPVFDGTPIGPTKVKVFTVPAGTEVILASDGYPEVFPTLAQSETHLHRLLDSDPMCMHENISTKGIIPGNLSFDDRAYIRFTHH
>NZ_CP015402.2|WP_068960594.1|3137345_3138329_+|IS30-family-transposase
MYRQLTSQQRSQIFALLQRKTSREEIALIVGCSQSTLCRELKRNSTTKGHYLWEKAHAKALERRKRTTSNKKLDSVLVWRIKQMIIDHQWSPEQIRGVLAKEGVSVSIQTIYNIINADESGELRRHRRHPDFRRRPKGERKPTKATNIPNRTSIHDRPAEADGKRFGDFEMDLIVDAYGHAILVLLERMTGFVMMEKLPYGKRAKPLSKTVVRMLYAYRKYLKTITTDNGSEFAAHLDITAGLRIKGLDDVTVYFADSYCSWQKGAVENINKLIRQYIPKKSNFNDFTDLYIKNVAKKLNLRPRKKLGFSNPKTEFFKQIANFALAS
>NZ_CP015402.2|WP_068961840.1|3151681_3153610_-|hypothetical-protein
MKKTFTLLCVTTLTLGQASAIKPVVMPESSTNSRNAVEVSAQTKAAISATTMTQQITNELRTVAKHNDQNLTLGAPALADEETSNEIVTYAYPNGTFYCQVSFFQPDDKGNLKEYTFVNGSALIPNGKNEWQNLVYDKTTGNVIKGIESTWQYMNSWYGQDKLGYIDESKEHNLTYVATPCARRDFAWEAPSLTVGGQTYQPKANWDEEKKDVESVVVGGDGNLNPGYRKYMETKYNRTEMKPTAYITDVYSEALASMYGYSNAFGAGTNTSFYSGTSINDVRTNYLTKNNKMPENAQFIGFAQTFNTGCAPVVLKKIGISGCFGLAVGDEVTFNIIDINRNTLLTSTIYTAEEATSDNYVDTRIIAEIFDETTELDYVILEPETTYLFTIEGVDGLNTFVPNLISYDAETYPNIPQAFMANTYVLFTDNEGALDLVGVSSWVNSLLAGEPVGYAPSMGWILDVEYPYTVPAYAFTGTNNTDIPDYFEADDSEIDVKFFSIEGTAAALPVIVTDMDSTTLANSIEYSSEALKEALYVGVKNNSATNVNNIPFTSAEYGITILPVADIPAGSWIKVNNITDSLKINLPAYEMSGIGDVVADGEAVATEYFDLQGRKISGEANGVVIKKMTMADGSVKTVKVVK
>NZ_CP015402.2|WP_068961841.1|3153691_3155110_-|DUF4302-domain-containing-protein
MKLYSRFLTASALLAIAGIAATSCSNKEDDIFDDAAAVRMDAAKADTKALLISAPNGWELSYFADNEWEPGYVILMKFHNDESVEMAGSNAWVANAFMSQDRYAVQRETSLYKMISDDGPVLTFDTFNKMLHIFSEPYNLPSATYNPENVPFPIGPQEKSPVSGKDTDVNESGYGHNGDYEFVILSKTDNEIILRGKKTRINMRLRRLADDTDWDTYFATVNRLAENTFSNRFGDLKIVVGGHELHLSNLTSGVMSILADDDDPLMETVKIPFVYTPDGIRLREPYKGFEDRLADIAIQNFAFNEDGTLRCTDRDVEFALNSSYPEIFGMRNYSWNIDLENAGGETKTILDQVIAEFEAHNSYRGLKFLYFNYSSASHKYALTIRVSRIASLGSIYGEYQYGENNSIKMSFNAADGDKNGIDRVSKIPAMQQFLQQISAKTWIVSSDAPMAPEKMKFTNAEDPSDFFNISLK
>NZ_CP015402.2|WP_068961842.1|3155168_3156530_-|hypothetical-protein
MKKYIIGSAVCLALAGAFASCSSDDDLDPVSIFQPEPDVLDPTSPTYKFDKWVKKNYLDEYNMTFTYRMKSLATDPDYNLVPASLDKSMQLAVLTKYLWYDVYDQITGSTDFLRQYGPKMLHIIGSSAVNPSTGTEILGLAEGGLKVSLFVVNDLDPENAELLNAKYFKTMHHEFSHILHQTKTYPKSFDEINAANYEPNTWQDRLGGTTCSLGFTSPYASGQAREDFAETCANYIVRTPDEWELTLWLADRGWVEVDDSFITYALSDVWPGAFRDLDKTGIDDAVMQKYGFCYYYYRNQSDKDQNRKTYFGQFVEREEVYYLTNLQLTVDATGSCSTPDFEYVNDYFYYIAGGGQKFKKVADFEAWVKTNFTDKGIEIFPAAASEKTEDGGDGRDGRAIILEKVSIARQWFASAWGIDMDALRALVQERQSDIDINELLKQIDDIDKVPDAE
>NZ_CP015402.2|WP_068961843.1|3156557_3158264_-|hypothetical-protein
MQLKNLKYIPLAGILVTLTGCDDFLDHTPDNRVTISTPTQVTQLLVNAYSDGNHATICELSSDNIVDNTSPDENGVRYNLSGDSNYAPADDEAFAWEDIKSGIQQDTPSHIWSGAYHAIAVCNYALQAIEQLEAQGRGDEVAAQKGEALVSRAYHHFILANLFCLPYAGAEASKSIPGIPYMTDIETEVKPQYDRGNLADVFDHIEKDLAVGLPLVNDNLHPLAPKYHFTIASAHAFAARFYLFARKYDLAEKHATIALGDAGAPTSMRNFWTKTFSTRQALTQSYIDVSDPGNLMLVATSSIYYRVIGQKYAHNREAKAATTHSTGPTWSKYTFHPCFNGKLYYYGQSEYGSVFAPMLELFEYTDKIAGIGYVHHIRPEFTKEEVLLTRAEARIYMRKISEAVADLSAWDVSRWTNLPVSDKPDCELTLEVINKFYADEGDTHGLRKNGIVSPINIDQVCTPANASWNYGDDIQHLVECVLHFRRLERIDMGDRWFDIRRNGIEITHKIGRSRVEHLPLGDTRRAFQIPADVLSAGFPENNRIPVSSGGADATLSTESYKKPISARP
>NZ_CP015402.2|WP_068961844.1|3158285_3161615_-|SusC/RagA-family-TonB-linked-outer-membrane-protein
MEKRIMLLLVTLCACIGMWAQVRVTGVVYSAEDDEPLIGATVAVKGKPAIATSTDLDGNFTLSVPSAGSTLVVTYVGMKPAEVKASSSPLTIKLESNAQQLGEVVVTGMSKMDKRLFTGATTKIDAEDARLSGVSDISRSLEGRAAGVSVQNVSGTFGTAPKIRVRGATSIYGNSKPLWVVDGVVLEDAVEVSADDLSSGDATTLISSAIAGLNADDIESFQILKDGSATSIYGARAMAGVIVVTTKKGKAGTTTLNYTGEFTYRMKPRYGDFNIMNSQEQMGVYKEMLEKGWLELSSLTKASESGVFGKMYQLINKYDPATGSFGLPNTQEAQYNYLRQAEFRNTDWFDELFQNNIMQNHAVSMSGGTDKGRFYSSISVMNDPGWTISSKVQRYTFNGNASYDLSPTVRVSILTSDSYRKQTAPGTLSQETDIVSGQVKRGFDINPYSYALNTSRTLDADEQYTRNYAGFNIKDELENNYIELGVTDLKFQGELNWRPFQGLDLTALGSYRYQRSTSEHFVKDNSNQANAYRAGIIPEDATIRDANKYLYTNPDDPNALPETILPQGGIYFNNAYSISQLDFRFNAQYNTTINRDHIINAMVGTEVAKTDRNAVSFQGWGFCYENGNIPFVDYNLFKQQVEEGSTYYSNQWTYRRSAAFFGTATYSYAARYIITGTARYEGTNKLGKARKSRWLPTWNVSGAWNAHEEPFWEALMPTFSHATLKGSYSLTADSGPDYVSNATAIFNPYTPWRPLSSVKELGIELESIANGELTYEKKHELNLGVDLGFFNNRINVVFDWYRRNNYDLIGTIFTQGVGGENQKYANVAEMASHGVEFTVSTRNFQGRDFSWSTDLTFAYAKNKITNLDAQSRVIDLITGNGYPMEGYPVRALFSIPFMGLNDEGLPTFINENGELTTSDFNFQEFEKMDHLVYEGPTDPTITGGFGNVFRWRNWHANVFITYSFGNKIRLDPVFAESYNDLTAMPREFKNRWVNPGDEKYTDIPVIASKVQTHNDPYLNYAFNAYNYSTARIAKGDFIRMKDISISYDVPTSFMQKLRMRSASFKLAATNLFLIYSDKKLNGQDPEFFNSGGVATPTPKQFTFTVRLGF
>NZ_CP015402.2|WP_084274247.1|3162201_3162855_-|Bax-inhibitor-1/YccA-family-protein
MRVSHVMRNVYLKMFLALLVTTAASFAVGAIPGLTYFLATHTWVYWGLLIVELVMVYSISGGVKRMSGGVATGLFYLYAVLNGVVFSLIFCAYSFDSIFKTFLITAGVFGAMSVYGYFTSNDLTKIGSFLYMALFGLIICIVVNLFWSNGVLDWIISAAGVLIFIGLTAYDTQKVKEWAQSGAMADSRLATIGALSLYLDFVNLFLYLLRFFGSSRD
>NZ_CP015402.2|WP_068961846.1|3163034_3164819_-|arginine--tRNA-ligase
MSIDSIIQEAVARAVASLYGIEADAASIVPQATRKEFEGNLTIVVFPWVKAARKAPEAVGKEIGDWLTANEPAVKGYNVVKGFLNIVIEPTYFTAMLRHMAADSDFGFRKAGADSPLVMVEYSSPNTNKPLHLGHMRNNLLGYSLSRILSACGNRVVKTNIVNDRGIHICKSMLAWQKWGEGVTPEKAGKKGDHLIGDFYVLFDKHYKEEVKALVAGGMGEEEAKNAAPLMQEAREMLRRWEQKDPEVRALWAMMNEWVYAGFDETYKRLGVDFDKIYYESETYLEGKDKVLEGLEKGIMYRKEDGSVWADLTDAGLDHKLLLRSDGTSVYMTQDIGTAKLRYQDFPIDKMIYVVGNEQNYHFQVLSLLLDRLGFKWGKDLVHFSYGMVELPEGKMKSREGTVVDADDLMDEMIQGAREVSNERGRGDMSPEEADEVARIVGMGALKYFLLKVDPRKNMTFNPKESIDFNGNTGPFIQYTYARIRSVLRKAAESGIAIEGYDTVEPNEKETSLIQHLADFPALVAEAGRSYSPALVANYVYELVKEYNQFYHDCTILNEPDTAVRAMRLALSALTADVVRRGMWLLGIEVPERM
>NZ_CP015402.2|WP_068961847.1|3164898_3165885_-|DUF4974-domain-containing-protein
MKQANDLFNKFYSGKLSPEELQQLRYEVNQMSDDEIDGYLSESAPDSMESVHRITPEDAETIRQRLADEIYSGSHHYRIYRRIATVAAVMIPIFITLTIVLGIRVARLDGYQKVIAGEQTIRSGNGEEILTVLPDGSRVRMAPESEIRYSLSSFNDKTRNVDWNGEGVFEVAHNRQSPFVVHTGYFDIKVLGTIFSVDVRHGNGEATVYLKEGSVELSASDSSCRLSPEYLATISSVTGEISVKRIEDFDSDIGSNVLTFDDVTLADVLSRLKLYYPGDFEAPEEMASQRFTGTLPKNNLDEALTIITKAYGLEVEWSAERVKLVRSE
>NZ_CP015402.2|WP_084274154.1|3165953_3166658_-|sigma-70-family-RNA-polymerase-sigma-factor
MFKNILQLLLKSALNPPHKPLPLPNIIKNKISHIRHKSLIFKPMHHPKDEQSLATSLKAGSVKAFEAIYRLYVDRLYAYCFDAIRMKQETEEVVHDVFLALWESRDNIEPDKGVGRLLFTIARKRRIDAFRKLVNSPIYEDYIEHQNSLPSPEHPPMEYEEFDRIFRKTLCTMPARMRTMIIWSKLQGLSNGEIALRLGVAEKTVRNQLSLALKELHYRLSPYIDNNRRIPPDT
>NZ_CP015402.2|WP_084274156.1|3166772_3170312_+|TonB-dependent-receptor
MYKLISTRLFSLLLMCFMVAGICGAAPSGRNVTVNVENSTLKSLFKAIESQTTYRFSYRMELIDGQKGVTVKMTDVPVGKVLDAAFSGRDLSYEIVSPNSIVITKKVDSGSPSSASGNKKTISGVVLDNLGDPAIGATVMVKGTNNGCSTDIDGRYTLGNVPADATIVFSMIGCVPREIAASDARALTSVEMKENAEVLDEVVVVGYGTQKRANLTGAVATISADDINNRPVANAANALQGADPSVNLTFNSGSMDAGYKIDIRGAASINGGSPLVLCDGMEVSLGQINPNDIESISVLKDASAAAIYGAKASSGVILITTKSGKDSDGKVNVSYNGRFGWRKNTTSTDFIHTGYDHVTIVNKFYRIAQGKDMWGYTGEDLDMLEARRYDNTENPDRPWTIERDGKLYFYANYDWYDYFYRDTRPEQEHNVSITGGNAKTNYYVSGRFLQQDGIFKIYNDKYTNYSFRMKLNAELFPFLRYSGGANFNYTNYKYAGYWNEQQTIHALQSNINSAVMPLSPDGQTIQYVNTMTGANSPLGAGHAGYLTDNQSRNSRGNKDFVLTNQFDIDIYKDLVITASYAYRYRNRGIERRGVPFNYLDKSGSVKKFTSGTVEDFYQEIKSDINRHSVNVFGTYNHVWNRMHNFKAVAGMQYEHQRNTELSVKKSDLLSDDLSSMSVANGVATVTEEISAYKTLGYFARLNYDYDGKYLLEVSGRYDGSSRFAPGCRWGFFPSASAGWRMSQEKFWDGMQGWWNNSKLRVSYGSLGNQQVSNYAYFDKIYTDKILTDYTFDGEQRATYATVSSPLSSNLTWEKVITYNLGLDFGFLNNRLTATADIFVRDTKDMLTHSVTLPSVFGATTPKQNCADLRTRGWELYLRWNDNLRLFGHRLNYSISATFGDYKSKITKFNNPDKLISDYYEGMTLGEIWGYKVDGLFASDEEAAEYQSRINDKAVNQRVYNAKTAGDNKLRAGDVKFIDLDGNGKIDEGSGVVGNSGDKRIIGNSIPRYNYSFRLDLNYVGFDVSAFFQGVGKCDWMPVQNSYDFWGPYDFPSLSFIHKDFLSMCWSEDNPDGYFPRQRGYQTYDGGSLSVATDRYLQNAAYLRLKNLTVGYTLPIKKNRWINSVRVYFTGENLAYWSPLKKHTKTVDPEMATSSGTYKSNSGTGYGFSKSFSLGVDVKF

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

291560 : 333618

Morganella_phage(50.0%)

integrase,transposase

attL 291103:291117|attR 317175:317189

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
291103:291117	attL	NA	NA	NA	NA
WP_068959864.1\|291560_292838_+\|integrase	site-specific integrase	H7BUI8	unidentified_phage	1.4e-28	34.4
WP_084273905.1\|293633_293786_+	hypothetical protein	NA	NA	NA	NA
WP_084273906.1\|293892_295173_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_084273888.1\|295327_296920_+\|transposase	IS21 family transposase	NA	NA	NA	NA
WP_068961956.1\|296957_297740_+	AAA family ATPase	A0A1W6JP39	Morganella_phage	8.2e-08	31.3
WP_084273907.1\|297798_298884_-	PHP domain-containing protein	NA	NA	NA	NA
WP_068961957.1\|298978_300268_-	ATP-binding protein	NA	NA	NA	NA
WP_068959865.1\|300850_302608_-	relaxase/mobilization nuclease domain-containing protein	NA	NA	NA	NA
WP_068959866.1\|302604_302985_-	hypothetical protein	NA	NA	NA	NA
WP_068959867.1\|303545_304958_-	DUF3987 domain-containing protein	NA	NA	NA	NA
WP_068961958.1\|304963_305272_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_068959868.1\|305453_306401_-	hypothetical protein	NA	NA	NA	NA
WP_133165744.1\|306959_307160_-	hypothetical protein	NA	NA	NA	NA
WP_068959871.1\|307150_307612_-	hypothetical protein	NA	NA	NA	NA
WP_068959872.1\|307614_308184_-	pentapeptide repeat-containing protein	NA	NA	NA	NA
WP_068959873.1\|308180_308984_-	DUF4267 domain-containing protein	NA	NA	NA	NA
WP_068959874.1\|308973_309531_-	hypothetical protein	NA	NA	NA	NA
WP_068959875.1\|309527_310352_-	hypothetical protein	NA	NA	NA	NA
WP_068959876.1\|310363_311017_-	hypothetical protein	NA	NA	NA	NA
WP_068959877.1\|311020_311416_-	DUF2750 domain-containing protein	NA	NA	NA	NA
WP_133165743.1\|311399_312065_-	hypothetical protein	NA	NA	NA	NA
WP_084273888.1\|312200_313793_+\|transposase	IS21 family transposase	NA	NA	NA	NA
WP_068961956.1\|313830_314613_+	AAA family ATPase	A0A1W6JP39	Morganella_phage	8.2e-08	31.3
WP_084273908.1\|314671_315484_-	virulence protein RhuM/Fic/DOC family protein	Q9JMN3	Wolbachia_phage	1.4e-23	41.7
WP_068959879.1\|315537_316974_-	hypothetical protein	NA	NA	NA	NA
WP_068959880.1\|317943_318288_+	hypothetical protein	NA	NA	NA	NA
317175:317189	attR	NA	NA	NA	NA
WP_068959881.1\|318663_319056_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_084274197.1\|319154_319652_+\|transposase	IS630 family transposase	NA	NA	NA	NA
WP_068959883.1\|319703_320951_+	leucine-rich repeat domain-containing protein	NA	NA	NA	NA
WP_068959884.1\|320954_321158_-	hypothetical protein	NA	NA	NA	NA
WP_068959885.1\|321271_322705_-	relaxase/mobilization nuclease domain-containing protein	NA	NA	NA	NA
WP_068959886.1\|322711_323095_-	hypothetical protein	NA	NA	NA	NA
WP_068959887.1\|323296_324238_-	DUF3408 domain-containing protein	NA	NA	NA	NA
WP_068961959.1\|324570_325788_-	helicase	NA	NA	NA	NA
WP_068959888.1\|325792_326122_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_068959890.1\|327565_329458_-	hypothetical protein	NA	NA	NA	NA
WP_068959891.1\|329450_330164_-	hypothetical protein	NA	NA	NA	NA
WP_068959892.1\|330178_331432_-	ATP-binding protein	NA	NA	NA	NA
WP_068959893.1\|331569_331887_-	hypothetical protein	NA	NA	NA	NA
WP_068959894.1\|332025_333618_+\|transposase	IS21 family transposase	NA	NA	NA	NA

DBSCAN-SWA_2

346022 : 491860

115

Acinetobacter_phage(16.67%)

integrase,transposase

attL 334491:334513|attR 499965:499987

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
334491:334513	attL	NA	NA	NA	NA
WP_084273910.1\|346022_346937_-\|transposase	IS982 family transposase	NA	NA	NA	NA
WP_068959903.1\|347061_348354_+	HlyC/CorC family transporter	NA	NA	NA	NA
WP_068959904.1\|348449_348872_-	heavy-metal-associated domain-containing protein	NA	NA	NA	NA
WP_084273911.1\|348906_350928_-	TonB-dependent receptor plug domain-containing protein	NA	NA	NA	NA
WP_068959906.1\|350966_351377_-	YjbQ family protein	NA	NA	NA	NA
WP_068959907.1\|351504_352650_-	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	3.7e-81	45.2
WP_068959908.1\|352725_353814_-	GDP-mannose 4,6-dehydratase	A0A0E3I6B5	Synechococcus_phage	6.1e-118	62.3
WP_068959909.1\|353964_355065_-\|transposase	ISAs1 family transposase	NA	NA	NA	NA
WP_068961962.1\|355444_356875_+	ATP-dependent DNA helicase RecG	A0A1B3AYT3	Gordonia_phage	1.9e-55	33.8
WP_068959910.1\|357022_359218_-	alpha-galactosidase	NA	NA	NA	NA
WP_068959911.1\|359355_360558_+	nicotinate phosphoribosyltransferase	NA	NA	NA	NA
WP_068959912.1\|360532_361114_-	hypothetical protein	NA	NA	NA	NA
WP_068959913.1\|361208_361988_-	YaaA family protein	NA	NA	NA	NA
WP_068961963.1\|362107_362626_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_084274202.1\|362636_363077_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_068959915.1\|363454_364498_+	alcohol dehydrogenase catalytic domain-containing protein	NA	NA	NA	NA
WP_157517389.1\|364508_364673_-	hypothetical protein	NA	NA	NA	NA
WP_068959916.1\|364785_365490_+	response regulator transcription factor	NA	NA	NA	NA
WP_068959917.1\|365473_366913_+	HAMP domain-containing histidine kinase	A0A1V0SGX0	Hokovirus	6.8e-16	26.6
WP_084273912.1\|367158_368073_-\|transposase	IS982 family transposase	NA	NA	NA	NA
WP_084273913.1\|368475_368670_-	DUF3791 domain-containing protein	NA	NA	NA	NA
WP_068959918.1\|368903_371174_-	phosphate transporter family protein	NA	NA	NA	NA
WP_084273914.1\|371664_372699_+	peptide-methionine (R)-S-oxide reductase MsrB	NA	NA	NA	NA
WP_068959919.1\|372802_374137_-	NADP-specific glutamate dehydrogenase	NA	NA	NA	NA
WP_068959920.1\|374288_376598_-	TonB-dependent receptor	A0A0P0I887	Acinetobacter_phage	2.3e-05	26.2
WP_068959921.1\|376778_379757_-	serine hydrolase	NA	NA	NA	NA
WP_068959922.1\|379770_381219_-	bifunctional metallophosphatase/5'-nucleotidase	S4W5J5	Pandoravirus	5.1e-11	23.0
WP_068959923.1\|381422_383075_-	diphosphate--fructose-6-phosphate 1-phosphotransferase	NA	NA	NA	NA
WP_068959924.1\|383224_383677_+	DUF695 domain-containing protein	NA	NA	NA	NA
WP_068959925.1\|383787_385149_-	DUF1735 domain-containing protein	NA	NA	NA	NA
WP_068959926.1\|385236_386436_-	DUF1735 domain-containing protein	NA	NA	NA	NA
WP_068959927.1\|386461_387478_-	hypothetical protein	NA	NA	NA	NA
WP_088294769.1\|387653_389234_-	SusD/RagB family nutrient-binding outer membrane lipoprotein	NA	NA	NA	NA
WP_084274204.1\|389251_392242_-	SusC/RagA family TonB-linked outer membrane protein	NA	NA	NA	NA
WP_068961967.1\|393146_393995_+	pantoate--beta-alanine ligase	NA	NA	NA	NA
WP_068961968.1\|394000_394351_+	aspartate 1-decarboxylase	NA	NA	NA	NA
WP_068959928.1\|394412_395768_+	signal recognition particle protein	NA	NA	NA	NA
WP_068959929.1\|395808_396732_+	endonuclease/exonuclease/phosphatase family protein	NA	NA	NA	NA
WP_068959930.1\|396744_398466_-	RagB/SusD family nutrient uptake outer membrane protein	NA	NA	NA	NA
WP_068959931.1\|398481_401634_-	TonB-dependent receptor	NA	NA	NA	NA
WP_068959932.1\|401778_402636_-	hypothetical protein	NA	NA	NA	NA
WP_068959933.1\|402823_403597_+\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_068959934.1\|403901_404930_+	histidine kinase	NA	NA	NA	NA
WP_068959935.1\|404934_405630_+	response regulator transcription factor	NA	NA	NA	NA
WP_068959936.1\|405717_406908_-	formate-dependent phosphoribosylglycinamide formyltransferase	NA	NA	NA	NA
WP_068959937.1\|406946_407984_-	hypothetical protein	NA	NA	NA	NA
WP_068959938.1\|408125_409256_+	vitamin K epoxide reductase family protein	NA	NA	NA	NA
WP_068959939.1\|409289_410060_-	ATP-binding cassette domain-containing protein	G3M9Y6	Bacillus_virus	2.7e-27	33.3
WP_068959940.1\|410056_410806_-	ABC transporter permease	NA	NA	NA	NA
WP_068959941.1\|410951_411569_+	uridine kinase	A0A1V0SAA3	Catovirus	5.8e-33	36.8
WP_068961969.1\|411751_412489_+	LPS export ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	1.0e-23	29.9
WP_068959942.1\|413602_414151_-	RloB domain-containing protein	NA	NA	NA	NA
WP_068959943.1\|414153_415308_-	ATP-binding protein	V9QJ85	Oenococcus_phage	2.9e-09	32.6
WP_157517390.1\|415617_415773_-	hypothetical protein	NA	NA	NA	NA
WP_068959944.1\|416065_416281_+	hypothetical protein	NA	NA	NA	NA
WP_068959945.1\|416293_416521_+	hypothetical protein	NA	NA	NA	NA
WP_084273915.1\|416533_416686_+	hypothetical protein	NA	NA	NA	NA
WP_068959946.1\|416773_417802_-\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_068959947.1\|417791_418787_-\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_084273906.1\|418773_420054_-\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_084273916.1\|420203_420497_+	hypothetical protein	NA	NA	NA	NA
WP_068959949.1\|420509_421841_+	hypothetical protein	NA	NA	NA	NA
WP_068959950.1\|421893_422151_+	hypothetical protein	NA	NA	NA	NA
WP_068959951.1\|422162_422387_+	DUF3873 domain-containing protein	NA	NA	NA	NA
WP_016562958.1\|422394_422712_+	hypothetical protein	A0A0F6WCW0	Sinorhizobium_phage	2.6e-13	45.2
WP_068959952.1\|422991_423690_+	DUF3800 domain-containing protein	NA	NA	NA	NA
WP_068959953.1\|423693_424233_+	hypothetical protein	NA	NA	NA	NA
WP_068959954.1\|424735_425767_-\|integrase	tyrosine-type recombinase/integrase	A0A1V0E036	Clostridioides_phage	1.1e-07	25.4
WP_084274206.1\|425759_427064_-\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_068959955.1\|427065_427848_-\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_068961956.1\|427938_428721_-	AAA family ATPase	A0A1W6JP39	Morganella_phage	8.2e-08	31.3
WP_084273888.1\|428758_430351_-\|transposase	IS21 family transposase	NA	NA	NA	NA
WP_068959956.1\|430466_430883_-	hypothetical protein	NA	NA	NA	NA
WP_068959957.1\|431640_432915_-	hypothetical protein	NA	NA	NA	NA
WP_068959958.1\|432960_433233_+	hypothetical protein	NA	NA	NA	NA
WP_068959959.1\|433373_433559_-	hypothetical protein	NA	NA	NA	NA
WP_068959960.1\|434562_435513_-	cysteine synthase A	A0A1X9I5F1	Streptococcus_phage	3.8e-92	57.9
WP_068959961.1\|435788_437024_-	MFS transporter	NA	NA	NA	NA
WP_068961971.1\|437036_438434_-	guanine deaminase	NA	NA	NA	NA
WP_068959962.1\|438891_440103_+	tryptophan synthase subunit beta	NA	NA	NA	NA
WP_068959963.1\|440183_441581_+	anthranilate synthase component I family protein	NA	NA	NA	NA
WP_068959964.1\|441595_442168_+	aminodeoxychorismate/anthranilate synthase component II	A0A0P0IKJ1	Acinetobacter_phage	4.3e-38	45.3
WP_068959965.1\|442234_443233_+	anthranilate phosphoribosyltransferase	A0A0N7IRD9	Acinetobacter_phage	6.1e-40	33.0
WP_068959966.1\|443229_444024_+	indole-3-glycerol-phosphate synthase	NA	NA	NA	NA
WP_084273918.1\|444165_444888_+	phosphoribosylanthranilate isomerase	NA	NA	NA	NA
WP_068959967.1\|444853_445633_+	tryptophan synthase subunit alpha	NA	NA	NA	NA
WP_068959968.1\|445744_447544_+	translational GTPase TypA	A0A2K5B2A5	Erysipelothrix_phage	8.8e-21	43.1
WP_068961973.1\|447809_449177_-	MFS transporter	NA	NA	NA	NA
WP_068959969.1\|449411_450581_+	AI-2E family transporter	NA	NA	NA	NA
WP_068959970.1\|450946_452446_+	hypothetical protein	NA	NA	NA	NA
WP_068959971.1\|452545_453655_+	2-iminoacetate synthase ThiH	NA	NA	NA	NA
WP_068959972.1\|453654_454086_+	hypothetical protein	NA	NA	NA	NA
WP_068959973.1\|454187_455501_-	threonine synthase	NA	NA	NA	NA
WP_068959974.1\|455523_456735_-	cofactor-independent phosphoglycerate mutase	NA	NA	NA	NA
WP_068959975.1\|456775_459211_-	bifunctional aspartate kinase/homoserine dehydrogenase I	NA	NA	NA	NA
WP_157517391.1\|459487_461398_+	family 16 glycosylhydrolase	NA	NA	NA	NA
WP_068959977.1\|461645_462818_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA
WP_068959978.1\|462817_465946_+	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA
WP_068959979.1\|465920_467363_+	efflux transporter outer membrane subunit	NA	NA	NA	NA
WP_084273919.1\|467465_470132_-	DUF5110 domain-containing protein	NA	NA	NA	NA
WP_068959980.1\|470189_472826_-	hypothetical protein	NA	NA	NA	NA
WP_099421466.1\|472927_474556_-	T9SS type A sorting domain-containing protein	NA	NA	NA	NA
WP_068959982.1\|475052_476843_-	RagB/SusD family nutrient uptake outer membrane protein	NA	NA	NA	NA
WP_084273921.1\|476853_477126_-	hypothetical protein	NA	NA	NA	NA
WP_084273922.1\|477135_480405_-	TonB-dependent receptor	NA	NA	NA	NA
WP_068959983.1\|480441_480858_-	hypothetical protein	NA	NA	NA	NA
WP_068959984.1\|480905_481916_-	DUF4974 domain-containing protein	NA	NA	NA	NA
WP_068959985.1\|481943_482522_-	RNA polymerase sigma-70 factor	NA	NA	NA	NA
WP_068961975.1\|482791_483352_+	carbonic anhydrase	NA	NA	NA	NA
WP_068959986.1\|485355_486240_+	prephenate dehydratase	NA	NA	NA	NA
WP_068959987.1\|486270_487443_+	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA
WP_068959988.1\|487444_488524_+	bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase type II	NA	NA	NA	NA
WP_068959989.1\|488555_489329_+	prephenate dehydrogenase	NA	NA	NA	NA
WP_068959990.1\|489347_490034_+	DUF2461 domain-containing protein	NA	NA	NA	NA
WP_068959991.1\|490759_491860_+\|integrase	site-specific integrase	H7BUI8	unidentified_phage	4.0e-24	36.6
499965:499987	attR	NA	NA	NA	NA

DBSCAN-SWA_3

500085 : 521476

Morganella_phage(66.67%)

integrase,transposase

attL 497120:497133|attR 520836:520849

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
497120:497133	attL	NA	NA	NA	NA
WP_084273888.1\|500085_501678_+\|transposase	IS21 family transposase	NA	NA	NA	NA
WP_068961956.1\|501715_502498_+	AAA family ATPase	A0A1W6JP39	Morganella_phage	8.2e-08	31.3
WP_084273923.1\|502563_503130_-	hypothetical protein	NA	NA	NA	NA
WP_088294766.1\|503116_503479_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_084273924.1\|503608_504118_+	hypothetical protein	NA	NA	NA	NA
WP_068959994.1\|504239_505508_-	hypothetical protein	NA	NA	NA	NA
WP_084273925.1\|505520_505979_-	hypothetical protein	NA	NA	NA	NA
WP_133165748.1\|505991_506204_-	hypothetical protein	NA	NA	NA	NA
WP_068959997.1\|506499_506694_+	hypothetical protein	NA	NA	NA	NA
WP_068961977.1\|507160_507673_+	hypothetical protein	NA	NA	NA	NA
WP_084273926.1\|507659_508340_+	hypothetical protein	NA	NA	NA	NA
WP_068959999.1\|508336_509101_+	serine/threonine protein phosphatase	A0A1V0SAD5	Catovirus	5.9e-27	32.5
WP_068961956.1\|509578_510361_-	AAA family ATPase	A0A1W6JP39	Morganella_phage	8.2e-08	31.3
WP_084273888.1\|510398_511991_-\|transposase	IS21 family transposase	NA	NA	NA	NA
WP_068960000.1\|512237_513212_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_068960001.1\|513195_514242_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_068960002.1\|515027_516431_+	mobilization protein	NA	NA	NA	NA
WP_068961978.1\|516733_517003_+	transcriptional regulator	NA	NA	NA	NA
WP_068960003.1\|517010_517301_+	GTP cyclohydrolase	NA	NA	NA	NA
WP_008774220.1\|517297_517849_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_068960004.1\|517815_518016_+	4-oxalocrotonate tautomerase	NA	NA	NA	NA
WP_084273927.1\|518012_518996_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_068960005.1\|519098_520001_-\|transposase	IS982 family transposase	NA	NA	NA	NA
WP_088294842.1\|520078_521476_-\|transposase	IS66 family transposase	NA	NA	NA	NA
520836:520849	attR	NA	NA	NA	NA

DBSCAN-SWA_4

814551 : 839975

Clostridium_phage(25.0%)

protease,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_084273949.1\|814551_815457_+\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
WP_068960199.1\|815714_817922_+	anaerobic ribonucleoside triphosphate reductase	A0A0A8WEK0	Clostridium_phage	6.0e-290	65.0
WP_068962003.1\|817921_818455_+	anaerobic ribonucleoside-triphosphate reductase activating protein	A0A2R2ZH61	Clostridioides_phage	3.8e-33	45.9
WP_068962004.1\|818665_819565_+	DMT family transporter	NA	NA	NA	NA
WP_068960200.1\|819655_821131_+	phosphotransferase	NA	NA	NA	NA
WP_068960201.1\|821127_821883_+	NTP transferase domain-containing protein	NA	NA	NA	NA
WP_084273950.1\|821883_822408_-	DUF4234 domain-containing protein	NA	NA	NA	NA
WP_084273951.1\|822692_823070_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA
WP_068960203.1\|823458_823692_+	hypothetical protein	NA	NA	NA	NA
WP_068960103.1\|823678_824779_-\|transposase	ISAs1 family transposase	NA	NA	NA	NA
WP_068960204.1\|824957_825248_+	hypothetical protein	NA	NA	NA	NA
WP_068960205.1\|825336_826863_-	hypothetical protein	NA	NA	NA	NA
WP_068960207.1\|827609_828038_-	DUF2867 domain-containing protein	NA	NA	NA	NA
WP_068962005.1\|828059_828941_-	DUF4377 domain-containing protein	NA	NA	NA	NA
WP_068960208.1\|828957_829515_-	DUF4840 domain-containing protein	NA	NA	NA	NA
WP_068960209.1\|830049_831432_+\|transposase	transposase	NA	NA	NA	NA
WP_068960210.1\|831786_832101_-\|transposase	transposase	NA	NA	NA	NA
WP_068960211.1\|832853_833822_-	nucleotidyl transferase AbiEii/AbiGii toxin family protein	NA	NA	NA	NA
WP_068960212.1\|833818_834550_-	hypothetical protein	NA	NA	NA	NA
WP_068960213.1\|835323_835536_+	hypothetical protein	NA	NA	NA	NA
WP_068960214.1\|835547_835997_+	hypothetical protein	NA	NA	NA	NA
WP_068960215.1\|836311_837538_+\|transposase	transposase	A0A218MNH3	uncultured_virus	5.5e-43	35.5
WP_088294838.1\|837561_838299_-	AAA family ATPase	A0A1W6JP39	Morganella_phage	1.0e-07	31.3
WP_084273888.1\|838382_839975_-\|transposase	IS21 family transposase	NA	NA	NA	NA

DBSCAN-SWA_5

872445 : 976836

102

Morganella_phage(18.18%)

integrase,transposase

attL 891878:891891|attR 965444:968058

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_068960241.1\|872445_873669_+\|integrase	site-specific integrase	NA	NA	NA	NA
WP_068960242.1\|873690_875013_+\|integrase	site-specific integrase	NA	NA	NA	NA
WP_016273983.1\|875071_875383_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_016273984.1\|875379_875673_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_016273985.1\|875705_876005_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_068960243.1\|876237_876651_-	hypothetical protein	NA	NA	NA	NA
WP_068960244.1\|876947_878264_-	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA
WP_133165719.1\|878238_878649_-	hypothetical protein	NA	NA	NA	NA
WP_084273956.1\|878615_880553_-	response regulator	Q8QKV7	Ectocarpus_siliculosus_virus	1.3e-22	25.9
WP_068960245.1\|880580_881090_-	DUF4375 domain-containing protein	NA	NA	NA	NA
WP_104369553.1\|881108_881828_-	hypothetical protein	NA	NA	NA	NA
WP_068960246.1\|881854_882322_-	hypothetical protein	NA	NA	NA	NA
WP_068962008.1\|882392_882770_-	hypothetical protein	NA	NA	NA	NA
WP_065538023.1\|882821_883286_-	hypothetical protein	NA	NA	NA	NA
WP_065538024.1\|883312_883906_-	DUF4304 domain-containing protein	NA	NA	NA	NA
WP_068960247.1\|883976_884369_-	DUF4377 domain-containing protein	NA	NA	NA	NA
WP_068960103.1\|884681_885782_-\|transposase	ISAs1 family transposase	NA	NA	NA	NA
WP_068960248.1\|886500_887088_-	hypothetical protein	NA	NA	NA	NA
WP_068960249.1\|887189_887594_-	hypothetical protein	NA	NA	NA	NA
WP_068960250.1\|887681_888032_-	hypothetical protein	NA	NA	NA	NA
WP_068960251.1\|888021_888369_-	hypothetical protein	NA	NA	NA	NA
WP_068960252.1\|888424_889060_-	ankyrin repeat domain-containing protein	A0A1L3IZC0	BeAn_58058_virus	2.8e-06	39.5
WP_068960253.1\|889119_889728_-	cell wall assembly protein	NA	NA	NA	NA
WP_068960254.1\|889779_890403_-	hypothetical protein	NA	NA	NA	NA
WP_068960255.1\|890483_891209_-	hypothetical protein	NA	NA	NA	NA
WP_068960256.1\|891278_891629_-	hypothetical protein	NA	NA	NA	NA
WP_068960257.1\|891618_891966_-	hypothetical protein	NA	NA	NA	NA
891878:891891	attL	NA	NA	NA	NA
WP_068960258.1\|892045_892411_-	hypothetical protein	NA	NA	NA	NA
891878:891891	attL	NA	NA	NA	NA
WP_065540270.1\|892430_892793_-	hypothetical protein	NA	NA	NA	NA
WP_009129244.1\|892969_893401_-	hypothetical protein	NA	NA	NA	NA
WP_068960259.1\|894085_894832_-	hypothetical protein	NA	NA	NA	NA
WP_068960260.1\|894907_896014_-\|integrase	tyrosine-type recombinase/integrase	S5W9T9	Leptospira_phage	7.0e-29	33.2
WP_068960261.1\|896139_896751_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_068960262.1\|896850_897639_-	PRTRC system ThiF family protein	NA	NA	NA	NA
WP_068960263.1\|897635_898340_-	PRTRC system protein B	NA	NA	NA	NA
WP_068960264.1\|898336_899434_-	hypothetical protein	NA	NA	NA	NA
WP_016274015.1\|899469_899691_-	PRTRC system protein C	NA	NA	NA	NA
WP_068960265.1\|900259_901024_+\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_068962009.1\|901703_901913_-	hypothetical protein	NA	NA	NA	NA
WP_016274754.1\|902311_902662_+	DUF488 family protein	NA	NA	NA	NA
WP_068960266.1\|902684_904355_+	hydroxylamine reductase	NA	NA	NA	NA
WP_068960267.1\|904360_904783_+	hypothetical protein	NA	NA	NA	NA
WP_016274757.1\|904912_905212_+	cupin domain-containing protein	NA	NA	NA	NA
WP_084273957.1\|905270_905561_-	nitrous oxide-stimulated promoter family protein	NA	NA	NA	NA
WP_068962010.1\|905561_906035_-	pyridoxamine 5'-phosphate oxidase family protein	NA	NA	NA	NA
WP_068960268.1\|906195_906432_-	hypothetical protein	NA	NA	NA	NA
WP_068960270.1\|907491_908940_+	HTH domain-containing protein	NA	NA	NA	NA
WP_068960271.1\|909390_909819_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_157517397.1\|910370_910514_+	hypothetical protein	NA	NA	NA	NA
WP_068960273.1\|910821_911946_+\|integrase	site-specific integrase	NA	NA	NA	NA
WP_068960274.1\|911958_913110_+\|integrase	site-specific integrase	H7BUI8	unidentified_phage	1.1e-16	30.9
912361:912374	attR	NA	NA	NA	NA
WP_068962011.1\|913143_913719_-	metal-binding protein	NA	NA	NA	NA
912361:912374	attR	NA	NA	NA	NA
WP_068960275.1\|913715_914468_-	ABC transporter ATP-binding protein	A0A1V0SE00	Indivirus	1.6e-13	27.9
WP_068960276.1\|914464_915466_-	iron ABC transporter permease	NA	NA	NA	NA
WP_068960277.1\|915477_916620_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_084273958.1\|916643_918737_-	TonB-dependent receptor	NA	NA	NA	NA
WP_068960278.1\|918746_919166_-	hypothetical protein	NA	NA	NA	NA
WP_068960279.1\|919165_920239_-	cell surface protein	NA	NA	NA	NA
WP_068960280.1\|920322_922308_-	hypothetical protein	NA	NA	NA	NA
WP_068960281.1\|922326_924087_-	cell surface protein	NA	NA	NA	NA
WP_068960282.1\|924154_925111_-	DUF4465 domain-containing protein	NA	NA	NA	NA
WP_068962013.1\|925641_926895_+	ATP-binding protein	NA	NA	NA	NA
WP_084274215.1\|926939_927557_+	hypothetical protein	NA	NA	NA	NA
WP_068960284.1\|927553_927964_+	hypothetical protein	NA	NA	NA	NA
WP_068962014.1\|928190_928433_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_068960285.1\|928444_928939_+	hypothetical protein	NA	NA	NA	NA
WP_068960286.1\|929199_929544_+	hypothetical protein	NA	NA	NA	NA
WP_068961956.1\|929586_930369_-	AAA family ATPase	A0A1W6JP39	Morganella_phage	8.2e-08	31.3
WP_084273888.1\|930407_932000_-\|transposase	IS21 family transposase	NA	NA	NA	NA
WP_068960287.1\|932238_932481_+	hypothetical protein	NA	NA	NA	NA
WP_068960288.1\|932608_933766_-	hypothetical protein	NA	NA	NA	NA
WP_133165753.1\|933762_933993_-	hypothetical protein	NA	NA	NA	NA
WP_068960290.1\|934025_934241_-	hypothetical protein	NA	NA	NA	NA
WP_084273959.1\|934237_935539_-	radical SAM protein	NA	NA	NA	NA
WP_068960292.1\|935774_936539_+\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_068960293.1\|936525_937194_-	radical SAM protein	NA	NA	NA	NA
WP_068960294.1\|937302_937803_-	hypothetical protein	NA	NA	NA	NA
WP_068960295.1\|937928_939311_+\|transposase	transposase	NA	NA	NA	NA
WP_084273960.1\|940597_941332_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_068960298.1\|941497_943015_+	HTH domain-containing protein	NA	NA	NA	NA
WP_068962015.1\|943317_943902_+	hypothetical protein	NA	NA	NA	NA
WP_088294837.1\|947795_948026_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_068960103.1\|948092_949193_-\|transposase	ISAs1 family transposase	NA	NA	NA	NA
WP_068960300.1\|949512_952917_+	hypothetical protein	A0A2K5B2B9	Erysipelothrix_phage	1.3e-25	24.3
WP_068960301.1\|952919_956231_+	N-6 DNA methylase	A0A2R2ZGH5	Clostridioides_phage	1.7e-25	21.1
WP_068960302.1\|956217_956568_+	hypothetical protein	NA	NA	NA	NA
WP_068960303.1\|956606_957071_+	hypothetical protein	NA	NA	NA	NA
WP_107033577.1\|957361_958351_+	hypothetical protein	NA	NA	NA	NA
WP_068960305.1\|958353_962016_+	hypothetical protein	NA	NA	NA	NA
WP_068960306.1\|962016_963021_+	virulence RhuM family protein	Q9JMN3	Wolbachia_phage	4.5e-75	47.9
WP_068960307.1\|963032_964481_+	hypothetical protein	NA	NA	NA	NA
WP_068960308.1\|964473_965346_+	cell filamentation protein Fic	NA	NA	NA	NA
WP_068961956.1\|965519_966302_-	AAA family ATPase	A0A1W6JP39	Morganella_phage	8.2e-08	31.3
WP_084273888.1\|966340_967933_-\|transposase	IS21 family transposase	NA	NA	NA	NA
WP_068960309.1\|968052_968415_+	hypothetical protein	NA	NA	NA	NA
WP_068960310.1\|968418_969402_+	DUF4249 domain-containing protein	NA	NA	NA	NA
WP_068960311.1\|969408_971022_+	DUF3943 domain-containing protein	NA	NA	NA	NA
WP_068960312.1\|971327_973208_-	ParB/RepB/Spo0J family partition protein	A0A1C9EHW0	Gordonia_phage	1.8e-13	30.8
WP_068960313.1\|973632_973824_-	histone H1	NA	NA	NA	NA
WP_068960314.1\|973888_974428_-	hypothetical protein	NA	NA	NA	NA
WP_068960315.1\|974424_974970_-	type IA DNA topoisomerase	NA	NA	NA	NA
WP_084273888.1\|975243_976836_+\|transposase	IS21 family transposase	NA	NA	NA	NA

DBSCAN-SWA_6

1072922 : 1116078

Bacillus_phage(33.33%)

integrase,transposase

attL 1070771:1070784|attR 1119335:1119348

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1070771:1070784	attL	NA	NA	NA	NA
WP_068960393.1\|1072922_1074308_-\|integrase	site-specific integrase	NA	NA	NA	NA
WP_133165676.1\|1074851_1075643_-	hypothetical protein	NA	NA	NA	NA
WP_068960395.1\|1075651_1076332_-	response regulator transcription factor	W8CYM9	Bacillus_phage	2.3e-30	35.4
WP_068960396.1\|1076321_1077740_-	HAMP domain-containing histidine kinase	W8CYF6	Bacillus_phage	1.2e-20	28.5
WP_068960397.1\|1077892_1079428_+	hypothetical protein	NA	NA	NA	NA
WP_084273970.1\|1079360_1079930_+	outer membrane beta-barrel protein	NA	NA	NA	NA
WP_068960399.1\|1080218_1080962_-	hypothetical protein	NA	NA	NA	NA
WP_068960400.1\|1080964_1081921_-	relaxase/mobilization nuclease domain-containing protein	NA	NA	NA	NA
WP_068960401.1\|1081901_1082288_-	hypothetical protein	NA	NA	NA	NA
WP_084273971.1\|1082471_1082996_-	DUF3408 domain-containing protein	NA	NA	NA	NA
WP_068960403.1\|1082937_1083825_-	toprim domain-containing protein	NA	NA	NA	NA
WP_068960404.1\|1083911_1084955_-	AAA family ATPase	NA	NA	NA	NA
WP_068960405.1\|1084951_1085281_-	DUF3853 family protein	NA	NA	NA	NA
WP_068960406.1\|1085519_1086647_-	hypothetical protein	NA	NA	NA	NA
WP_133165675.1\|1086875_1087352_+	DUF4065 domain-containing protein	NA	NA	NA	NA
WP_068960408.1\|1087348_1088167_+	hypothetical protein	NA	NA	NA	NA
WP_068960409.1\|1088366_1089719_-\|integrase	site-specific integrase	NA	NA	NA	NA
WP_068960410.1\|1090244_1091234_+	hypothetical protein	NA	NA	NA	NA
WP_068960411.1\|1091630_1091960_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_068960412.1\|1091940_1093320_+	DUF3987 domain-containing protein	NA	NA	NA	NA
WP_068960413.1\|1093405_1094488_+	hypothetical protein	NA	NA	NA	NA
WP_068960414.1\|1094484_1095000_+	DUF3408 domain-containing protein	NA	NA	NA	NA
WP_133165674.1\|1095185_1095572_+	hypothetical protein	NA	NA	NA	NA
WP_084273972.1\|1095552_1096509_+	relaxase/mobilization nuclease domain-containing protein	NA	NA	NA	NA
WP_016564623.1\|1096511_1097264_+	hypothetical protein	NA	NA	NA	NA
WP_068960417.1\|1097452_1098463_-	hypothetical protein	NA	NA	NA	NA
WP_068960419.1\|1098809_1099463_-	hypothetical protein	NA	NA	NA	NA
WP_133165672.1\|1099459_1100329_-	hypothetical protein	NA	NA	NA	NA
WP_107033548.1\|1100333_1101407_-	hypothetical protein	NA	NA	NA	NA
WP_068960422.1\|1101620_1102718_-	DUF1016 domain-containing protein	Q9JMP5	Wolbachia_phage	3.4e-76	40.7
WP_068960423.1\|1102804_1104154_-\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_068961956.1\|1105028_1105811_-	AAA family ATPase	A0A1W6JP39	Morganella_phage	8.2e-08	31.3
WP_084273888.1\|1105851_1107444_-\|transposase	IS21 family transposase	NA	NA	NA	NA
WP_068960425.1\|1108798_1109401_-	hypothetical protein	NA	NA	NA	NA
WP_068960426.1\|1110304_1111486_+	AAA family ATPase	NA	NA	NA	NA
WP_068960427.1\|1111488_1112067_+	RloB domain-containing protein	NA	NA	NA	NA
WP_068961960.1\|1112432_1113215_-	AAA family ATPase	A0A1W6JP39	Morganella_phage	8.2e-08	31.3
WP_084273974.1\|1113256_1114849_-\|transposase	IS21 family transposase	NA	NA	NA	NA
WP_068960429.1\|1114941_1116078_-\|integrase	site-specific integrase	H7BUI8	unidentified_phage	1.9e-21	38.2
1119335:1119348	attR	NA	NA	NA	NA

DBSCAN-SWA_7

1271028 : 1366323

Streptococcus_phage(23.53%)

tRNA,integrase,transposase

attL 1325788:1325847|attR 1337411:1340021

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_068959933.1\|1271028_1271802_+\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_084273990.1\|1271788_1272505_-	protein kinase	M1PWQ7	Moumouvirus	5.4e-06	31.5
WP_068960547.1\|1272422_1274084_-	leucine-rich repeat domain-containing protein	NA	NA	NA	NA
WP_157517398.1\|1274104_1275061_-	hypothetical protein	NA	NA	NA	NA
WP_157517399.1\|1275094_1275733_-	hypothetical protein	NA	NA	NA	NA
WP_084273991.1\|1275979_1276882_-	fimbrillin family protein	NA	NA	NA	NA
WP_068960551.1\|1276890_1280451_-	leucine-rich repeat protein	NA	NA	NA	NA
WP_084273992.1\|1280474_1281377_-	fimbrillin family protein	NA	NA	NA	NA
WP_068960553.1\|1281803_1282811_-	YeiH family putative sulfate export transporter	NA	NA	NA	NA
WP_133169808.1\|1283461_1284937_+	hypothetical protein	NA	NA	NA	NA
WP_068960555.1\|1284902_1285694_+	hypothetical protein	NA	NA	NA	NA
WP_068960556.1\|1285763_1287269_+	oligosaccharide flippase family protein	NA	NA	NA	NA
WP_068960557.1\|1287265_1288348_+	polysaccharide pyruvyl transferase family protein	NA	NA	NA	NA
WP_084273993.1\|1288340_1289495_+	4Fe-4S dicluster domain-containing protein	NA	NA	NA	NA
WP_068960559.1\|1289491_1290664_+	glycosyltransferase family 1 protein	NA	NA	NA	NA
WP_068960560.1\|1290641_1291988_+	oligosaccharide repeat unit polymerase	NA	NA	NA	NA
WP_068960561.1\|1291984_1293055_+	glycosyltransferase family 4 protein	NA	NA	NA	NA
WP_068960562.1\|1293066_1293852_+	glycosyltransferase	NA	NA	NA	NA
WP_068960563.1\|1294024_1295197_+	N-acetylglucosamine-6-phosphate deacetylase	NA	NA	NA	NA
WP_068960564.1\|1295380_1297396_+	fructose-bisphosphatase class III	NA	NA	NA	NA
WP_068959909.1\|1297548_1298649_-\|transposase	ISAs1 family transposase	NA	NA	NA	NA
WP_084273994.1\|1298766_1299684_+	DNA/RNA non-specific endonuclease	A0A2H4N7Z3	Lake_Baikal_phage	3.4e-21	34.6
WP_068960566.1\|1299717_1301211_+\|tRNA	tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE	NA	NA	NA	NA
WP_084273995.1\|1301391_1302363_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_068960568.1\|1302463_1303573_+\|integrase	site-specific integrase	A0A1B0WMK0	Flavobacterium_phage	6.8e-08	29.1
WP_068960569.1\|1303817_1304507_+	hypothetical protein	NA	NA	NA	NA
WP_068960570.1\|1304607_1304970_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_084273996.1\|1304963_1306364_+	DUF3987 domain-containing protein	NA	NA	NA	NA
WP_068960572.1\|1306677_1307049_+	plasmid mobilization relaxosome protein MobC	NA	NA	NA	NA
WP_068960573.1\|1307045_1308803_+	relaxase/mobilization nuclease domain-containing protein	NA	NA	NA	NA
WP_068960574.1\|1308995_1309331_+	hypothetical protein	NA	NA	NA	NA
WP_068960575.1\|1309323_1309833_+	DNA mismatch endonuclease Vsr	E5E3X5	Burkholderia_phage	2.0e-31	47.7
WP_068960576.1\|1310058_1311267_+	DNA cytosine methyltransferase	M1PSQ0	Streptococcus_phage	5.1e-41	31.2
WP_068960577.1\|1311263_1312766_+	DNA cytosine methyltransferase	M1PSQ0	Streptococcus_phage	5.0e-38	32.0
WP_068960578.1\|1312762_1313644_+	hypothetical protein	M1NSM1	Streptococcus_phage	3.3e-13	36.6
WP_068960103.1\|1313737_1314838_+\|transposase	ISAs1 family transposase	NA	NA	NA	NA
WP_068960579.1\|1314876_1316229_+	hypothetical protein	M1NSM1	Streptococcus_phage	3.6e-11	39.0
WP_068960580.1\|1316225_1318469_+	LlaJI family restriction endonuclease	NA	NA	NA	NA
WP_084273997.1\|1318484_1320629_+	hypothetical protein	NA	NA	NA	NA
WP_084273998.1\|1320775_1321609_+	hypothetical protein	NA	NA	NA	NA
WP_068960581.1\|1321652_1322690_+	alcohol dehydrogenase catalytic domain-containing protein	NA	NA	NA	NA
WP_068960582.1\|1322697_1323699_+	virulence RhuM family protein	Q9JMN3	Wolbachia_phage	7.4e-78	48.6
WP_068960583.1\|1323699_1324815_-	Fic family protein	NA	NA	NA	NA
WP_133165747.1\|1325484_1325679_-	hypothetical protein	NA	NA	NA	NA
1325788:1325847	attL	NA	NA	NA	NA
WP_068961956.1\|1325861_1326644_-	AAA family ATPase	A0A1W6JP39	Morganella_phage	8.2e-08	31.3
WP_084273888.1\|1326681_1328274_-\|transposase	IS21 family transposase	NA	NA	NA	NA
WP_068960584.1\|1328555_1329464_-	hypothetical protein	NA	NA	NA	NA
WP_068960585.1\|1329652_1329910_+	ribbon-helix-helix protein, CopG family	NA	NA	NA	NA
WP_068960586.1\|1329906_1330194_+	type II toxin-antitoxin system YafQ family toxin	NA	NA	NA	NA
WP_084273999.1\|1330249_1330846_-\|integrase	tyrosine-type recombinase/integrase	H7BUI8	unidentified_phage	4.8e-08	27.2
WP_068960103.1\|1330846_1331947_-\|transposase	ISAs1 family transposase	NA	NA	NA	NA
WP_068960588.1\|1332033_1332600_-	hypothetical protein	NA	NA	NA	NA
WP_068960589.1\|1332712_1333612_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_068962031.1\|1334352_1334985_-	phosphohydrolase	NA	NA	NA	NA
WP_068960590.1\|1335192_1336506_-	ATP-binding protein	NA	NA	NA	NA
WP_084274000.1\|1336618_1337281_-	ATP-binding protein	NA	NA	NA	NA
WP_068961956.1\|1337484_1338267_-	AAA family ATPase	A0A1W6JP39	Morganella_phage	8.2e-08	31.3
WP_084273888.1\|1338304_1339897_-\|transposase	IS21 family transposase	NA	NA	NA	NA
WP_084274001.1\|1339921_1341244_+	AAA family ATPase	NA	NA	NA	NA
1337411:1340021	attR	NA	NA	NA	NA
WP_068960592.1\|1341280_1342297_+	Fic family protein	NA	NA	NA	NA
WP_068960593.1\|1342354_1343680_+	AAA family ATPase	A0A1L3KIW1	Beihai_Nido-like_virus	2.9e-05	35.9
WP_068960594.1\|1343657_1344641_-\|transposase	IS30 family transposase	H7BVY4	unidentified_phage	2.1e-21	30.9
WP_068960595.1\|1344875_1346306_+	DUF2726 domain-containing protein	A0A2H4NG15	Yichang_virus	2.7e-09	25.5
WP_068960596.1\|1346477_1347860_-\|transposase	transposase	NA	NA	NA	NA
WP_068960597.1\|1348020_1348458_+	PH domain-containing protein	NA	NA	NA	NA
WP_016411820.1\|1348599_1348920_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_068960598.1\|1348923_1350177_+	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA
WP_068960599.1\|1350266_1350686_-	hypothetical protein	NA	NA	NA	NA
WP_068960600.1\|1350672_1351308_-	hypothetical protein	NA	NA	NA	NA
WP_068960601.1\|1351320_1351512_-	hypothetical protein	NA	NA	NA	NA
WP_088294830.1\|1351534_1352719_-	DUF3825 domain-containing protein	NA	NA	NA	NA
WP_068960603.1\|1352843_1353869_-	hypothetical protein	NA	NA	NA	NA
WP_068960604.1\|1354414_1355449_+	Fic family protein	NA	NA	NA	NA
WP_068960605.1\|1355520_1357053_+	DUF1186 domain-containing protein	NA	NA	NA	NA
WP_084274002.1\|1357593_1358052_-	hypothetical protein	NA	NA	NA	NA
WP_068960607.1\|1358086_1358422_+	hypothetical protein	NA	NA	NA	NA
WP_068960608.1\|1358607_1359063_+	hypothetical protein	NA	NA	NA	NA
WP_068960609.1\|1359046_1359694_+	hypothetical protein	NA	NA	NA	NA
WP_068960610.1\|1359674_1360292_+	hypothetical protein	NA	NA	NA	NA
WP_068960611.1\|1360301_1361192_-	DUF2807 domain-containing protein	NA	NA	NA	NA
WP_068960612.1\|1361224_1361788_-	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA
WP_068960613.1\|1361763_1362159_-	MmcQ/YjbR family DNA-binding protein	NA	NA	NA	NA
WP_084273888.1\|1362660_1364253_+\|transposase	IS21 family transposase	NA	NA	NA	NA
WP_088294838.1\|1364335_1365073_+	AAA family ATPase	A0A1W6JP39	Morganella_phage	1.0e-07	31.3
WP_068960215.1\|1365096_1366323_-\|transposase	transposase	A0A218MNH3	uncultured_virus	5.5e-43	35.5

DBSCAN-SWA_8

1405562 : 1468705

Morganella_phage(25.0%)

integrase,transposase

attL 1418874:1418888|attR 1448216:1448230

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_084273888.1\|1405562_1407155_+\|transposase	IS21 family transposase	NA	NA	NA	NA
WP_068961956.1\|1407193_1407976_+	AAA family ATPase	A0A1W6JP39	Morganella_phage	8.2e-08	31.3
WP_068960650.1\|1408038_1408980_+	hypothetical protein	NA	NA	NA	NA
WP_084274008.1\|1409355_1411014_-	hypothetical protein	NA	NA	NA	NA
WP_133165752.1\|1411069_1411282_-	hypothetical protein	NA	NA	NA	NA
WP_068960651.1\|1411735_1411948_+	hypothetical protein	NA	NA	NA	NA
WP_157517400.1\|1411960_1412107_+	hypothetical protein	NA	NA	NA	NA
WP_068960652.1\|1412194_1413019_-\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_068960653.1\|1413036_1414263_+\|transposase	transposase	A0A218MNH3	uncultured_virus	2.1e-42	35.2
WP_133169809.1\|1414297_1414594_+	hypothetical protein	NA	NA	NA	NA
WP_068960654.1\|1414599_1415439_+	alpha/beta hydrolase	NA	NA	NA	NA
WP_068960655.1\|1415454_1419027_+	MMPL family transporter	NA	NA	NA	NA
1418874:1418888	attL	NA	NA	NA	NA
WP_068960656.1\|1419010_1420357_+	hypothetical protein	NA	NA	NA	NA
WP_068960657.1\|1420369_1420594_+	acyl carrier protein	NA	NA	NA	NA
WP_068960658.1\|1420601_1421918_+	acyl--CoA ligase	NA	NA	NA	NA
WP_068960659.1\|1422231_1422957_-	DUF5131 family protein	A0A1B1IPP1	uncultured_Mediterranean_phage	2.0e-16	27.0
WP_088294866.1\|1423385_1423961_-	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA
WP_084274009.1\|1425779_1425998_-	DUF3873 domain-containing protein	NA	NA	NA	NA
WP_068960662.1\|1426048_1427311_-	hypothetical protein	NA	NA	NA	NA
WP_068960663.1\|1427322_1427778_-	hypothetical protein	NA	NA	NA	NA
WP_068960664.1\|1428853_1430053_+	ATP-binding protein	NA	NA	NA	NA
WP_068960665.1\|1430056_1430671_+	RloB domain-containing protein	NA	NA	NA	NA
WP_068960666.1\|1431072_1432056_+	MarR family transcriptional regulator	NA	NA	NA	NA
WP_068960667.1\|1432639_1433866_+\|integrase	site-specific integrase	H7BUI8	unidentified_phage	2.5e-35	39.2
WP_068960668.1\|1434904_1436287_+\|transposase	transposase	NA	NA	NA	NA
WP_068960596.1\|1436926_1438309_-\|transposase	transposase	NA	NA	NA	NA
WP_068960596.1\|1439173_1440556_+\|transposase	transposase	NA	NA	NA	NA
WP_068961956.1\|1440934_1441717_-	AAA family ATPase	A0A1W6JP39	Morganella_phage	8.2e-08	31.3
WP_084273888.1\|1441756_1443349_-\|transposase	IS21 family transposase	NA	NA	NA	NA
WP_068960670.1\|1445504_1446743_+\|integrase	site-specific integrase	H7BUI8	unidentified_phage	6.6e-28	35.9
WP_084274010.1\|1446801_1447041_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_084274011.1\|1447506_1449588_-	hypothetical protein	NA	NA	NA	NA
1448216:1448230	attR	NA	NA	NA	NA
WP_084274012.1\|1449658_1451128_-	DUF3945 domain-containing protein	NA	NA	NA	NA
WP_016411857.1\|1451152_1451521_-	hypothetical protein	NA	NA	NA	NA
WP_068960675.1\|1451700_1452297_-	hypothetical protein	NA	NA	NA	NA
WP_068960676.1\|1452599_1453937_+	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA
WP_150980488.1\|1453988_1458611_-	DNA methylase	A0A223W0B5	Agrobacterium_phage	8.6e-129	28.1
WP_084274013.1\|1460121_1460643_-	DUF1896 family protein	NA	NA	NA	NA
WP_068960679.1\|1460599_1462600_-	TraM recognition domain-containing protein	NA	NA	NA	NA
WP_068960680.1\|1462615_1463866_-	relaxase/mobilization nuclease domain-containing protein	NA	NA	NA	NA
WP_068960681.1\|1463947_1465756_-	group II intron reverse transcriptase/maturase	A0A0U4J920	Pseudomonas_phage	2.8e-27	29.8
WP_068960682.1\|1466429_1466855_-	hypothetical protein	NA	NA	NA	NA
WP_068960683.1\|1467511_1468705_+\|transposase	IS4 family transposase	NA	NA	NA	NA

DBSCAN-SWA_9

1516443 : 1542645

unidentified_phage(25.0%)

integrase,transposase

attL 1518622:1518644|attR 1537034:1537056

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_068960723.1\|1516443_1517568_+\|integrase	site-specific integrase	H7BUI8	unidentified_phage	5.8e-63	41.0
WP_016278655.1\|1517594_1518059_-	hypothetical protein	NA	NA	NA	NA
WP_016278656.1\|1518270_1518546_+	excisionase family DNA-binding protein	NA	NA	NA	NA
1518622:1518644	attL	NA	NA	NA	NA
WP_084273888.1\|1518742_1520335_+\|transposase	IS21 family transposase	NA	NA	NA	NA
WP_068960726.1\|1521972_1522971_-	hypothetical protein	A0A1B1IWG0	uncultured_Mediterranean_phage	7.0e-20	26.2
WP_068960727.1\|1522961_1523381_-	hypothetical protein	NA	NA	NA	NA
WP_068960728.1\|1523381_1524404_-	hypothetical protein	NA	NA	NA	NA
WP_068960729.1\|1524410_1525802_-	hypothetical protein	NA	NA	NA	NA
WP_068962042.1\|1526091_1527192_+\|transposase	ISAs1 family transposase	NA	NA	NA	NA
WP_068960730.1\|1527276_1528737_-	hypothetical protein	NA	NA	NA	NA
WP_088294863.1\|1529162_1530371_-	helicase	NA	NA	NA	NA
WP_084274221.1\|1530499_1530745_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_157517401.1\|1531412_1531574_-	hypothetical protein	NA	NA	NA	NA
WP_068960731.1\|1531650_1533672_-	FRG domain-containing protein	NA	NA	NA	NA
WP_068960732.1\|1533792_1535211_-	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_068960733.1\|1535252_1536614_-\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_068961956.1\|1537104_1537887_-	AAA family ATPase	A0A1W6JP39	Morganella_phage	8.2e-08	31.3
1537034:1537056	attR	NA	NA	NA	NA
WP_084273888.1\|1537924_1539517_-\|transposase	IS21 family transposase	NA	NA	NA	NA
WP_068960734.1\|1539629_1540937_+	toprim domain-containing protein	B8Q5B5	Abalone_shriveling_syndrome-associated_virus	9.2e-12	34.5
WP_084273888.1\|1541052_1542645_+\|transposase	IS21 family transposase	NA	NA	NA	NA

DBSCAN-SWA_10

1600490 : 1629068

uncultured_Mediterranean_phage(20.0%)

tRNA,integrase,transposase

attL 1622136:1622166|attR 1626523:1626553

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_068960779.1\|1600490_1601813_-\|tRNA	tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))- methylthiotransferase MtaB	NA	NA	NA	NA
WP_068960780.1\|1601924_1602662_-	DUF5131 family protein	A0A1B1IPP1	uncultured_Mediterranean_phage	8.5e-15	27.9
WP_068960781.1\|1602748_1604884_-	methylmalonyl-CoA mutase	NA	NA	NA	NA
WP_068960782.1\|1604902_1606759_-	methylmalonyl-CoA mutase small subunit	NA	NA	NA	NA
WP_157517403.1\|1607043_1607211_-	hypothetical protein	NA	NA	NA	NA
WP_084274023.1\|1607287_1607875_-	hypothetical protein	NA	NA	NA	NA
WP_068960783.1\|1607888_1609085_-	FprA family A-type flavoprotein	NA	NA	NA	NA
WP_068960784.1\|1609204_1609780_-	elongation factor P	NA	NA	NA	NA
WP_068960594.1\|1609919_1610903_-\|transposase	IS30 family transposase	H7BVY4	unidentified_phage	2.1e-21	30.9
WP_068960785.1\|1611130_1611913_-	TIGR00159 family protein	NA	NA	NA	NA
WP_068960786.1\|1611922_1612777_-	dihydropteroate synthase	A0A0B5J4J5	Pandoravirus	1.7e-19	29.7
WP_068960787.1\|1612794_1614159_-\|tRNA	histidine--tRNA ligase	A0A2K9L0H9	Tupanvirus	8.3e-48	32.8
WP_068960788.1\|1614308_1615721_-	hypothetical protein	NA	NA	NA	NA
WP_068960789.1\|1615930_1616473_+	hypothetical protein	NA	NA	NA	NA
WP_068960790.1\|1617292_1617856_+	rubredoxin	NA	NA	NA	NA
WP_025069034.1\|1618976_1619312_+	hypothetical protein	NA	NA	NA	NA
WP_025069035.1\|1619319_1619535_+	hypothetical protein	NA	NA	NA	NA
WP_018667431.1\|1619546_1619768_+	hypothetical protein	NA	NA	NA	NA
WP_008782568.1\|1619780_1620191_+	hypothetical protein	NA	NA	NA	NA
WP_068960791.1\|1620193_1621477_+	PcfJ-like protein	NA	NA	NA	NA
WP_068960792.1\|1621501_1621759_+	hypothetical protein	NA	NA	NA	NA
WP_068960793.1\|1621779_1622013_+	DUF3873 domain-containing protein	NA	NA	NA	NA
WP_157517404.1\|1622009_1622153_+	hypothetical protein	NA	NA	NA	NA
1622136:1622166	attL	NA	NA	NA	NA
WP_068960265.1\|1622429_1623194_+\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_068960794.1\|1623202_1624447_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_005924223.1\|1624430_1625417_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_005841877.1\|1625419_1626445_+\|integrase	site-specific integrase	NA	NA	NA	NA
WP_068960795.1\|1626759_1627068_+	hypothetical protein	A0A0K1LL53	Rhodobacter_phage	3.1e-11	42.0
1626523:1626553	attR	NA	NA	NA	NA
WP_084273888.1\|1627475_1629068_+\|transposase	IS21 family transposase	NA	NA	NA	NA

DBSCAN-SWA_11

1634843 : 1688214

Bacillus_virus(16.67%)

tRNA,integrase,protease,transposase

attL 1626382:1626396|attR 1652523:1652537

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1626382:1626396	attL	NA	NA	NA	NA
WP_068960801.1\|1634843_1636091_-\|integrase	site-specific integrase	NA	NA	NA	NA
WP_068960103.1\|1636091_1637192_-\|transposase	ISAs1 family transposase	NA	NA	NA	NA
WP_068960802.1\|1637522_1638689_-\|integrase	site-specific integrase	H7BUI8	unidentified_phage	1.8e-22	32.1
WP_068960803.1\|1639056_1639734_+	DedA family protein	NA	NA	NA	NA
WP_068960804.1\|1639841_1640486_+	ribulose-phosphate 3-epimerase	NA	NA	NA	NA
WP_084274223.1\|1640795_1643465_+	DNA translocase FtsK	S5VNE3	Mycobacterium_phage	3.7e-68	39.7
WP_068960805.1\|1643461_1644115_+	hypothetical protein	NA	NA	NA	NA
WP_068960806.1\|1644153_1645095_+	thioredoxin-disulfide reductase	A0A2I2L5E1	Orpheovirus	8.0e-66	46.5
WP_068960807.1\|1645278_1645644_+	DUF488 family protein	NA	NA	NA	NA
WP_084274025.1\|1645664_1646111_+	PepSY-like domain-containing protein	NA	NA	NA	NA
WP_068960809.1\|1646376_1648869_+	bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase/alanine racemase	NA	NA	NA	NA
WP_084274026.1\|1648919_1650383_-	MFS transporter	NA	NA	NA	NA
WP_068960810.1\|1650532_1651336_-	twin-arginine translocase subunit TatC	NA	NA	NA	NA
WP_068960811.1\|1651328_1651538_-	twin-arginine translocase TatA/TatE family subunit	NA	NA	NA	NA
WP_068960812.1\|1651746_1652523_+	dihydroorotate dehydrogenase electron transfer subunit	NA	NA	NA	NA
WP_068962054.1\|1652528_1653434_+	dihydroorotate dehydrogenase	NA	NA	NA	NA
1652523:1652537	attR	NA	NA	NA	NA
WP_068960813.1\|1654007_1656140_+	transcription termination factor Rho	NA	NA	NA	NA
WP_068960814.1\|1656200_1657097_+	ACP S-malonyltransferase	NA	NA	NA	NA
WP_068960815.1\|1657198_1658044_+	carboxylating nicotinate-nucleotide diphosphorylase	NA	NA	NA	NA
WP_068960816.1\|1658043_1659180_+	8-amino-7-oxononanoate synthase	V5LQ39	Emiliania_huxleyi_virus	2.8e-33	29.4
WP_068960817.1\|1659176_1660571_+	DUF452 family protein	NA	NA	NA	NA
WP_068960818.1\|1660567_1661194_+	ATP-dependent dethiobiotin synthetase BioD	NA	NA	NA	NA
WP_068960819.1\|1661372_1662023_+	3'-5' exonuclease domain-containing protein 2	NA	NA	NA	NA
WP_088294814.1\|1662116_1662314_+	hypothetical protein	NA	NA	NA	NA
WP_068960821.1\|1662422_1665026_-\|protease	ATP-dependent Clp protease ATP-binding subunit	A0A248SJW6	Salicola_phage	1.0e-126	40.3
WP_068960822.1\|1665267_1667841_+	DNA gyrase subunit A	G3M9Z5	Bacillus_virus	4.6e-116	33.4
WP_068960823.1\|1667939_1668464_-	methylated-DNA--[protein]-cysteine S-methyltransferase	M1PFU9	Streptococcus_phage	2.0e-18	44.2
WP_084274027.1\|1668537_1669236_-	OmpA family protein	G3M9Z0	Bacillus_virus	6.2e-07	43.8
WP_068960825.1\|1669400_1671053_-	AMP-binding protein	A0A1V0SBX8	Catovirus	5.0e-31	25.2
WP_084274028.1\|1671625_1672327_-	outer membrane beta-barrel protein	NA	NA	NA	NA
WP_068960827.1\|1672459_1673065_-	hypothetical protein	NA	NA	NA	NA
WP_068960828.1\|1673372_1673570_-	hypothetical protein	NA	NA	NA	NA
WP_084273910.1\|1673718_1674633_+\|transposase	IS982 family transposase	NA	NA	NA	NA
WP_068960829.1\|1674653_1675118_-	hypothetical protein	NA	NA	NA	NA
WP_068960830.1\|1675264_1675834_-	Crp/Fnr family transcriptional regulator	NA	NA	NA	NA
WP_068960831.1\|1675887_1676577_-	TrkA family potassium uptake protein	NA	NA	NA	NA
WP_068960832.1\|1676981_1679237_-	DNA primase	A0A218MKR7	uncultured_virus	2.1e-43	30.2
WP_068960833.1\|1679300_1680257_+	methylenetetrahydrofolate reductase [NAD(P)H]	NA	NA	NA	NA
WP_068960834.1\|1680261_1681383_+	DNA polymerase III subunit delta'	S5WKH4	Pseudomonas_phage	1.4e-05	24.4
WP_068960835.1\|1681411_1684474_+	PD-(D/E)XK nuclease family protein	NA	NA	NA	NA
WP_068960836.1\|1684494_1685610_+	radical SAM family heme chaperone HemW	NA	NA	NA	NA
WP_068960837.1\|1685630_1686104_-	23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH	NA	NA	NA	NA
WP_068960838.1\|1686183_1686876_-\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB	NA	NA	NA	NA
WP_068959705.1\|1687014_1688214_+\|transposase	IS110 family transposase	Q9JMN8	Wolbachia_phage	3.1e-30	25.9

Anti-CRISPR protein detection

Acr_ID: NZ_CP015402.2|WP_084273916.1|420203_420497_+|hypothetical-protein

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Acr_ID: NZ_CP015402.2|WP_068960214.1|835547_835997_+|hypothetical-protein

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Acr_ID: NZ_CP015402.2|WP_008782568.1|1619780_1620191_+|hypothetical-protein

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Acr ID

Acr position

Acr size

Homology with known anti

Neighbor HTH/AcRanker

Neighbor Aca

In prophage

Protospacer in prophage

NZ_CP015402.2|WP_084273916.1|420203_420497_+|hypothetical-protein

420203_420497_+

97 aa aa

hit_Aca_id	identity	query_coverage	hit_coverage
gnl\|BL_ORD_ID\|40	0.48484848484848486	1	0.7021276595744681

346022-491860

NZ_CP015402.2|WP_068960214.1|835547_835997_+|hypothetical-protein

835547_835997_+

149 aa aa

hit_Aca_id	identity	query_coverage	hit_coverage
gnl\|BL_ORD_ID\|40	0.44594594594594594	0.9932885906040269	0.9929078014184397

814551-839975

NZ_CP015402.2|WP_008782568.1|1619780_1620191_+|hypothetical-protein

1619780_1620191_+

136 aa aa

hit_Aca_id	identity	query_coverage	hit_coverage
gnl\|BL_ORD_ID\|40	0.5673758865248227	1	1.0

1600490-1629068

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP015402

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

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