CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number
NZ_CP016479	Synechococcus sp. PCC 7117 plasmid unnamed2, complete sequence	0 crisprs	NA	0	0
NZ_CP016482	Synechococcus sp. PCC 7117 plasmid unnamed5, complete sequence	3 crisprs	cas4,WYL,csx18,cas1,cas2,cas3,cas10d,csc2gr7,csc1gr5,cas6	1	52
NZ_CP016480	Synechococcus sp. PCC 7117 plasmid unnamed3, complete sequence	0 crisprs	NA	0	0
NZ_CP016477	Synechococcus sp. PCC 7117 chromosome, complete genome	3 crisprs	csa3,cas3,cas14j,DinG,c2c9_V-U4,WYL,RT,Cas14c_CAS-V-F	0	1
NZ_CP016478	Synechococcus sp. PCC 7117 plasmid unnamed1, complete sequence	0 crisprs	NA	0	0
NZ_CP016481	Synechococcus sp. PCC 7117 plasmid unnamed4, complete sequence	0 crisprs	cas3	0	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP016482_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP016482_1

54-380

Orphan

Consensus_repeat	Method
CTTTCCAACCACTAAATCCCGACCACGGGACTGAAAC	PILER-CR
CTTTCCAACCACTAAATCCCGACCACGGGACTGAAAC	CRISPRCasFinder
CTTTCCAACCACTAAATCCCGACCACGGGACTGAAAC	CRT

4 spacers

The CRISPR arrays of NZ_CP016482_1

>merge|NZ_CP016482|1|54-380|PILER-CR,CRISPRCasFinder,CRT
CTTTCCAACCACTAAATCCCGACCACGGGACTGAAACTGTTCATTGAAGCGCGGATTTATCTTCACCCTTCTGCTTTCCAACCACTAAATCCCGACCACGGGACTGAAACAAGTACAGGGGAAAGGGATCGAATATCTCGAAGCTTTCCAACCACTAAATCCCGACCACGGGACTGAAACCCTAGAGCTAGAACGGGCTAAATTTGGCTGCAATGACTTTCCAACCACTAAATCCCGACCACGGGACTGAAACCTCGATGATCGTTTCATCTTCGTCCCCTACCGCAAAGCTTTCCAACCACTAAATCCCGACCACGGGACTGAAAC

>NZ_CP016482|1|1|54-380|PILER-CR
CTTTCCAACCACTAAATCCCGACCACGGGACTGAAAC	TGTTCATTGAAGCGCGGATTTATCTTCACCCTTCTG
CTTTCCAACCACTAAATCCCGACCACGGGACTGAAAC	AAGTACAGGGGAAAGGGATCGAATATCTCGAAG
CTTTCCAACCACTAAATCCCGACCACGGGACTGAAAC	CCTAGAGCTAGAACGGGCTAAATTTGGCTGCAATGA
CTTTCCAACCACTAAATCCCGACCACGGGACTGAAAC	CTCGATGATCGTTTCATCTTCGTCCCCTACCGCAAAG
CTTTCCAACCACTAAATCCCGACCACGGGACTGAAAC

>NZ_CP016482|1|1|54-380|CRISPRCasFinder
CTTTCCAACCACTAAATCCCGACCACGGGACTGAAAC	TGTTCATTGAAGCGCGGATTTATCTTCACCCTTCTG
CTTTCCAACCACTAAATCCCGACCACGGGACTGAAAC	AAGTACAGGGGAAAGGGATCGAATATCTCGAAG
CTTTCCAACCACTAAATCCCGACCACGGGACTGAAAC	CCTAGAGCTAGAACGGGCTAAATTTGGCTGCAATGA
CTTTCCAACCACTAAATCCCGACCACGGGACTGAAAC	CTCGATGATCGTTTCATCTTCGTCCCCTACCGCAAAG
CTTTCCAACCACTAAATCCCGACCACGGGACTGAAAC

>NZ_CP016482|1|1|54-380|CRT
CTTTCCAACCACTAAATCCCGACCACGGGACTGAAAC	TGTTCATTGAAGCGCGGATTTATCTTCACCCTTCTG
CTTTCCAACCACTAAATCCCGACCACGGGACTGAAAC	AAGTACAGGGGAAAGGGATCGAATATCTCGAAG
CTTTCCAACCACTAAATCCCGACCACGGGACTGAAAC	CCTAGAGCTAGAACGGGCTAAATTTGGCTGCAATGA
CTTTCCAACCACTAAATCCCGACCACGGGACTGAAAC	CTCGATGATCGTTTCATCTTCGTCCCCTACCGCAAAG
CTTTCCAACCACTAAATCCCGACCACGGGACTGAAAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP016482.1\|WP_065711834.1\|5631_7248_-\|sodium:proton-antiporter	unknown	unknown	gnl\|CDD\|223104
NZ_CP016482.1\|WP_065711837.1\|9972_10170_-\|DUF2892-domain-containing-protein	unknown	unknown	gnl\|CDD\|378561
NZ_CP016482.1\|WP_065711831.1\|970_1291_-\|nucleotidyltransferase-family-protein	unknown	unknown	gnl\|CDD\|224583
NZ_CP016482.1\|WP_065711835.1\|7788_9069_+\|sulfide:quinone-reductase	unknown	unknown	gnl\|CDD\|224172
NZ_CP016482.1\|WP_065711838.1\|10684_11707_+\|iron-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|376439
NZ_CP016482.1\|WP_065711836.1\|9384_9918_-\|cytochrome-b6-f-complex-iron-sulfur-subunit	unknown	unknown	gnl\|CDD\|237392
NZ_CP016482.1\|WP_157094662.1\|1564_1705_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP016482.1\|WP_030008170.1\|636_978_-\|DUF86-domain-containing-protein	unknown	unknown	gnl\|CDD\|225236
NZ_CP016482.1\|WP_084449080.1\|4015_5635_+\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|226651
NZ_CP016482.1\|WP_084449061.1\|11703_12540_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224045

Protein	Function_ID	Function_description	E-value
NZ_CP016482.1\|WP_065711834.1\|5631_7248_-\|sodium:proton-antiporter	gnl\|CDD\|223104	COG0025, NhaP, NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism].	4.19268e-41
NZ_CP016482.1\|WP_065711837.1\|9972_10170_-\|DUF2892-domain-containing-protein	gnl\|CDD\|378561	pfam11127, DUF2892, Protein of unknown function (DUF2892). This family is conserved in bacteria. The function is not known.	6.05049e-09
NZ_CP016482.1\|WP_065711831.1\|970_1291_-\|nucleotidyltransferase-family-protein	gnl\|CDD\|224583	COG1669, COG1669, Predicted nucleotidyltransferases [General function prediction only].	6.00161e-22
NZ_CP016482.1\|WP_065711835.1\|7788_9069_+\|sulfide:quinone-reductase	gnl\|CDD\|224172	COG1252, Ndh, NADH dehydrogenase, FAD-containing subunit [Energy production and conversion].	2.46795e-34
NZ_CP016482.1\|WP_065711836.1\|9384_9918_-\|cytochrome-b6-f-complex-iron-sulfur-subunit	gnl\|CDD\|237392	PRK13474, PRK13474, cytochrome b6-f complex iron-sulfur subunit; Provisional.	1.1307e-111
NZ_CP016482.1\|WP_065711838.1\|10684_11707_+\|iron-ABC-transporter-permease	gnl\|CDD\|376439	pfam01032, FecCD, FecCD transport family. This is a sub-family of bacterial binding protein-dependent transport systems family. This Pfam entry contains the inner components of this multicomponent transport system.	1.65793e-86
NZ_CP016482.1\|WP_030008170.1\|636_978_-\|DUF86-domain-containing-protein	gnl\|CDD\|225236	COG2361, COG2361, Uncharacterized conserved protein [Function unknown].	2.04529e-36
NZ_CP016482.1\|WP_084449080.1\|4015_5635_+\|alpha/beta-hydrolase	gnl\|CDD\|226651	COG4188, COG4188, Predicted dienelactone hydrolase [General function prediction only].	2.64832e-72
NZ_CP016482.1\|WP_084449061.1\|11703_12540_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224045	COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism].	1.68778e-116

>NZ_CP016482.1|WP_030008170.1|636_978_-|DUF86-domain-containing-protein
MSRSLKLYLNDILTSIDKIQEYSEGLEKEAFLKHSLIFDAVTLNLQIIGEASKKIPEQIRNQYPHIPWRNIIGLRNIIAHTYFYLDEDILWHTIQHELEPLQKCIQELWDKEA
>NZ_CP016482.1|WP_065711831.1|970_1291_-|nucleotidyltransferase-family-protein
MTKQQTACSSVITSEQVLETLRNYPNLFEEFSIKTLALFGSTAHNQATATSDLDFVVEFQNETTLSLYMDLKFFLEELFNKPVDLATKKSLKEIIREQVLNEAKYV
>NZ_CP016482.1|WP_157094662.1|1564_1705_-|hypothetical-protein
MESFSLTRKPTFRKNYLYPAIQAGLVVMKYPDNPRHPQRKYKKVDG
>NZ_CP016482.1|WP_084449080.1|4015_5635_+|alpha/beta-hydrolase
MMALGASSQAAEKIYFIYSPLMESLKIDSLKSFAATGNVPLDLKFYLDIVGADAEERQLLQTALTRKIDIDPVLLARSLKTDEGERLLESFGQVVNIRGGRNGKYALRGAIIKSAFEENGLTLLNVLDNLGVDVQVDLEQLFGFAENVSTILAGTERFIEEVEQLAKQEAKFAAVADYGQRSDLRKLGMFAVEMETWQLADQKRDRQFYAQIYRPQKPLGEKVPVILISHGLASAPEKHRNLAQHLASYGFVVVVPQHPGSDLAYLEEFAVGYQRQVSDLQEFVNRPLDISFTLDELERRNDTEFGGRLDLENVGIYGHSYGGYTALAVAGDFPTPNFEQLNEDCAAEWGIFNNALLLQCRALQLSPENYNFRDQRIQAVIAANPVNASIFGEAALSQIEIPIAVVAGSYDPATPFIFEQVRSFPWIRSEQKYLILEEGQAHVDISRLDLGITGLLDRIPRLNLPSPQLLNDYSEAIALAFFQVYTAEDDQYRTYLDPAYGQYLSQNEEFKTFMITQDSLPELEAAIAEFKQENQIDIN
>NZ_CP016482.1|WP_065711834.1|5631_7248_-|sodium:proton-antiporter
MLESIIWILLLGFFGGQIAQRLRIPALVGMVLVGIVLGPQVGNAIAPEVLAIAADLRTMAVMVILMKAGLGLDREKLAQQGSVALRLGFLPATCEAIAIMLIAVQLFQFDWATGLLLGCVLGAESPAVIVPGMLRLKSLGWGVKKGIPDAILTGSALSDVLLLLVFSLLLAFLTQTTATGVTLIGSLSLSPWQLLPLQIVTQISLGVVLGWVTARLLVSLLARQNWTDNAVQDGLIAAGVALLLVIGAEYLPIFSGYLAVMGTGFFLIELDAPLARRLRGSFDSLWAIAQIILFVLLGASIQLDVLGDTFWLGLLVLAVGTLGGRSLGWYLSTLGSNWTGRERLFLLPGNSAKATVQAAIGAIPLSQGVAGGEIILALSALSILVTAPLGAWAIPTFAPKLLERGDIDPTKVSVNRRTVLLAAVDTSPLAQQILIKTAELARRSDAEVIVLHVIRTDNPAELQRLRQQTRRNLADIRYQFIATPGPVPATIMDIAHTHQVSEIIMGKRNHHPPNNLLIGSVSQAILEKSPLPVVIIEA
>NZ_CP016482.1|WP_065711835.1|7788_9069_+|sulfide:quinone-reductase
MAHIVVIGAGIGGLPTAYELRHLLTTDHTVTLIADTPHFTFIPSLPWVALGLKRLDQVQLPLPALARRHGLHWVQGAVQQINPQERYVLIGSDAKRIDYDYVVIAPGAALNLDALPGLGPETGFTQSVCNPHHALLAHQAWEKFIQNPGPLVVGAAPGASCFGPAYEFALLADWQLRRLGLREQVPITLVTPEPYLGHLGIGGMAHSQELVEQVLQQQDIATRANAEITAIKPDMICLADGEQLPFAYSMVLPSFQGPTFLRDCPAIANSQGFIPVLPTYQHPEFDSVYAAGVIVELTPHEATPIPTGLPKTGQMTEAMGMAAAHNIARQLNSNLGAPVTATLAAICMSDFGDRGIIFIADPVQREPGMVKRRRCVALEGRWVSWSKTLFELFFLTKMRWGLTIPWFEKLGLKALGLQLVRPLPLD
>NZ_CP016482.1|WP_065711836.1|9384_9918_-|cytochrome-b6-f-complex-iron-sulfur-subunit
MENSLPIDSPSLSRRQLLNFLTGAVVASTIGPALYPVAKFFSPPKEVGADGSILAKDINGNLIPASQLLAEAPGTRALVAGLAGEPTYLTIQEDGTLHPWGIVDNCTHLGCTFPWNENDDQFQCPCHGSRYDAEGRVVRGPAPLPLRLTHIYLEGDYVRIAPWVELDPRTGKKPWWV
>NZ_CP016482.1|WP_065711837.1|9972_10170_-|DUF2892-domain-containing-protein
MFNNVGTGDRLIRLLFASVLAYLGLFIYSGSVLGTALVAVAAVLTISAVLGFCMLYGLLKINTRQ
>NZ_CP016482.1|WP_065711838.1|10684_11707_+|iron-ABC-transporter-permease
MLRCFQFSIQDYSQQRIAWTSVLLAVLVVITSIVALCQGAVSMGPDQVWQALRHQGDPMFQTIIWDLRLPRIVVALVVGAALGLSGALLQGLLRNSLADPFILGISAGAGLVAIAFITLNVLAIWIPLGAWLGALVTAAVVYGLGYVGGGLSVERLVLAGVAVSSLFGAVQTTLILLADDSRIQAALNWLIGSLNGRGWQDLSLVAPYLSVALIIGCLLGRSLNLLNLGDDAAVGLGVSLGRSRLLIGGIASLLAASAVSISGLIGFVGLVVPHGVRLLVGADYRWILPLSALAGAWVLTLADLLSRSGAVELPVGAVTALLGSPLFIALLYQRGKGAKA
>NZ_CP016482.1|WP_084449061.1|11703_12540_+|ABC-transporter-ATP-binding-protein
MTLSPELAEQASDIPVVSIPLEAKHLAGGYGQRAVVQDVNLTIYQGEWLSLVGGNGSGKSTLLRLLSRILKPQGGVVRLDGKAIQRRSPQEVARSLAILPQQSRVPAGLTVRQLVGLGRAPHQNWWQWEYSEADQAQIDQALAQTQLSQFAHRPVMQLSGGERQRAFLALALAQKPKILILDEPTTFLDIHYQLELLELLKQLNRQQNLTIVTVLHELNLATRYSDRLAMIKDGKLFALGTPAAVMTPKNLRFGFGVEAVTIPTPVGLQICVLGPTSV

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Crispr_ID: NZ_CP016482_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP016482_2

236389-237178

Unclear

Consensus_repeat	Method
GTTTCTCTTTACTTGAGAAGCTAATAGATTGGAAAC	PILER-CR
GTTTCTCTTTACTTGAGAAGCTAATAGATTGGAAAC	CRISPRCasFinder
GTTTCTCTTTACTTGAGAAGCTAATAGATTGGAAAC	CRT

10 spacers

cas2,cas1,csx18,WYL

The CRISPR arrays of NZ_CP016482_2

>merge|NZ_CP016482|2|236389-237178|PILER-CR,CRISPRCasFinder,CRT
GTTTCTCTTTACTTGAGAAGCTAATAGATTGGAAACGCTTAGAATTTGACCAGTTGGTCAATAAGCCATTGCGTTTCTCTTTACTTGAGAAGCTAATAGATTGGAAACAATACAGAACCCTTTTCTGTTCCTTTACATCGTCATGATGTTTCTCTTTACTTGAGAAGCTAATAGATTGGAAACTTAGTACACATTGAATATGGAGGTATCAACATGTACTTACGTTTCTCTTTACTTGAGAAGCTAATAGATTGGAAACCCATTGTTACAGTGCAACAAGTTGATTACATCTGTGGCAACAGGTTTCTCTTTACTTGAGAAGCTAATAGATTGGAAACTCAGTAACAGCTGTGTCTAGTAGATAGTGTCTGTAGGTATGTTTCTCTTTACTTGAGAAGCTAATAGATTGGAAACTTAGATTTTCTAGAAGAAAATTATCAATTTAATTTAATAAGTTTCTCTTTACTTGAGAAGCTAATAGATTGGAAACTTTTCAAGTATTATGGATGGACGAAAGATTTAGATATGAGTTTCTCTTTACTTGAGAAGCTAATAGATTGGAAACCGGTCGAGCTCGTCCCAGTCCACCGGGGTCGAGACCGGTGTTTCTCTTTACTTGAGAAGCTAATAGATTGGAAACAGTTTGTAGATAGGTTCAATCTCTACATCTTCAAAGAAGTTTCTCTTTACTTGAGAAGCTAATAGATTGGAAACCTCCTGCAGGTCTTTAACTTGTTGTTGGAGTTGGACAAGAGTTTCTCTTTACTTGAGAAGCTAAATTCGATTATCA

>NZ_CP016482|2|2|236389-237102|PILER-CR
GTTTCTCTTTACTTGAGAAGCTAATAGATTGGAAAC	GCTTAGAATTTGACCAGTTGGTCAATAAGCCATTGC
GTTTCTCTTTACTTGAGAAGCTAATAGATTGGAAAC	AATACAGAACCCTTTTCTGTTCCTTTACATCGTCATGAT
GTTTCTCTTTACTTGAGAAGCTAATAGATTGGAAAC	TTAGTACACATTGAATATGGAGGTATCAACATGTACTTAC
GTTTCTCTTTACTTGAGAAGCTAATAGATTGGAAAC	CCATTGTTACAGTGCAACAAGTTGATTACATCTGTGGCAACAG
GTTTCTCTTTACTTGAGAAGCTAATAGATTGGAAAC	TCAGTAACAGCTGTGTCTAGTAGATAGTGTCTGTAGGTAT
GTTTCTCTTTACTTGAGAAGCTAATAGATTGGAAAC	TTAGATTTTCTAGAAGAAAATTATCAATTTAATTTAATAA
GTTTCTCTTTACTTGAGAAGCTAATAGATTGGAAAC	TTTTCAAGTATTATGGATGGACGAAAGATTTAGATATGA
GTTTCTCTTTACTTGAGAAGCTAATAGATTGGAAAC	CGGTCGAGCTCGTCCCAGTCCACCGGGGTCGAGACCGGT
GTTTCTCTTTACTTGAGAAGCTAATAGATTGGAAAC	AGTTTGTAGATAGGTTCAATCTCTACATCTTCAAAGAA
GTTTCTCTTTACTTGAGAAGCTAATAGATTGGAAAC

>NZ_CP016482|2|2|236389-237178|CRISPRCasFinder
GTTTCTCTTTACTTGAGAAGCTAATAGATTGGAAAC	GCTTAGAATTTGACCAGTTGGTCAATAAGCCATTGC
GTTTCTCTTTACTTGAGAAGCTAATAGATTGGAAAC	AATACAGAACCCTTTTCTGTTCCTTTACATCGTCATGAT
GTTTCTCTTTACTTGAGAAGCTAATAGATTGGAAAC	TTAGTACACATTGAATATGGAGGTATCAACATGTACTTAC
GTTTCTCTTTACTTGAGAAGCTAATAGATTGGAAAC	CCATTGTTACAGTGCAACAAGTTGATTACATCTGTGGCAACAG
GTTTCTCTTTACTTGAGAAGCTAATAGATTGGAAAC	TCAGTAACAGCTGTGTCTAGTAGATAGTGTCTGTAGGTAT
GTTTCTCTTTACTTGAGAAGCTAATAGATTGGAAAC	TTAGATTTTCTAGAAGAAAATTATCAATTTAATTTAATAA
GTTTCTCTTTACTTGAGAAGCTAATAGATTGGAAAC	TTTTCAAGTATTATGGATGGACGAAAGATTTAGATATGA
GTTTCTCTTTACTTGAGAAGCTAATAGATTGGAAAC	CGGTCGAGCTCGTCCCAGTCCACCGGGGTCGAGACCGGT
GTTTCTCTTTACTTGAGAAGCTAATAGATTGGAAAC	AGTTTGTAGATAGGTTCAATCTCTACATCTTCAAAGAA
GTTTCTCTTTACTTGAGAAGCTAATAGATTGGAAAC	CTCCTGCAGGTCTTTAACTTGTTGTTGGAGTTGGACAAGA
GTTTCTCTTTACTTGAGAAGCTAAATTCGATTATCA

>NZ_CP016482|2|2|236389-237178|CRT
GTTTCTCTTTACTTGAGAAGCTAATAGATTGGAAAC	GCTTAGAATTTGACCAGTTGGTCAATAAGCCATTGC
GTTTCTCTTTACTTGAGAAGCTAATAGATTGGAAAC	AATACAGAACCCTTTTCTGTTCCTTTACATCGTCATGAT
GTTTCTCTTTACTTGAGAAGCTAATAGATTGGAAAC	TTAGTACACATTGAATATGGAGGTATCAACATGTACTTAC
GTTTCTCTTTACTTGAGAAGCTAATAGATTGGAAAC	CCATTGTTACAGTGCAACAAGTTGATTACATCTGTGGCAACAG
GTTTCTCTTTACTTGAGAAGCTAATAGATTGGAAAC	TCAGTAACAGCTGTGTCTAGTAGATAGTGTCTGTAGGTAT
GTTTCTCTTTACTTGAGAAGCTAATAGATTGGAAAC	TTAGATTTTCTAGAAGAAAATTATCAATTTAATTTAATAA
GTTTCTCTTTACTTGAGAAGCTAATAGATTGGAAAC	TTTTCAAGTATTATGGATGGACGAAAGATTTAGATATGA
GTTTCTCTTTACTTGAGAAGCTAATAGATTGGAAAC	CGGTCGAGCTCGTCCCAGTCCACCGGGGTCGAGACCGGT
GTTTCTCTTTACTTGAGAAGCTAATAGATTGGAAAC	AGTTTGTAGATAGGTTCAATCTCTACATCTTCAAAGAA
GTTTCTCTTTACTTGAGAAGCTAATAGATTGGAAAC	CTCCTGCAGGTCTTTAACTTGTTGTTGGAGTTGGACAAGA
GTTTCTCTTTACTTGAGAAGCTAAATTCGATTATCA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP016482.1\|WP_065711987.1\|230736_231426_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP016482.1\|WP_065711993.1\|235931_236210_+\|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187856
NZ_CP016482.1\|WP_065711986.1\|229559_230711_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP016482.1\|WP_065711996.1\|240088_240508_+\|transcriptional-regulator	unknown	unknown	gnl\|CDD\|227786
NZ_CP016482.1\|WP_065711994.1\|237398_239459_+\|DNA-phosphorothioation-associated-putative-methyltransferase	unknown	unknown	gnl\|CDD\|274979
NZ_CP016482.1\|WP_157094673.1\|240627_240864_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP016482.1\|WP_065712001.1\|244103_245246_-\|ATP-dependent-helicase	unknown	unknown	gnl\|CDD\|223288
NZ_CP016482.1\|WP_084449089.1\|241034_241844_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225973
NZ_CP016482.1\|WP_084449090.1\|246553_247075_+\|DUF2442-domain-containing-protein	unknown	unknown	gnl\|CDD\|378424
NZ_CP016482.1\|WP_157094674.1\|242675_243716_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP016482.1\|WP_065711995.1\|239627_239948_+\|type-II-toxin-antitoxin-system-HigB-family-toxin	unknown	unknown	gnl\|CDD\|378301
NZ_CP016482.1\|WP_065711991.1\|234652_234949_+\|hypothetical-protein	csx18	cls000006_csx18_CAS-I:CAS-III	unknown
NZ_CP016482.1\|WP_084449078.1\|243712_244126_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|350194
NZ_CP016482.1\|WP_065711985.1\|228759_229155_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP016482.1\|WP_065711988.1\|231430_232612_+\|pentapeptide-repeat-containing-protein	unknown	unknown	gnl\|CDD\|224276
NZ_CP016482.1\|WP_065711992.1\|234945_235932_+\|CRISPR-associated-endonuclease-Cas1	cas1	cd09634_cas1_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|376633
NZ_CP016482.1\|WP_157094672.1\|234251_234473_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP016482.1\|WP_084449079.1\|245349_246357_+\|DNA-phosphorothioation-system-sulfurtransferase-DndC	unknown	unknown	gnl\|CDD\|235877
NZ_CP016482.1\|WP_065711989.1\|232867_234094_-\|WYL-domain-containing-protein	WYL	pfam13280_WYL_CAS-I:CAS-III	gnl\|CDD\|379100
NZ_CP016482.1\|WP_049761775.1\|228133_228724_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|224117

Protein	Function_ID	Function_description	E-value
NZ_CP016482.1\|WP_065712001.1\|244103_245246_-\|ATP-dependent-helicase	gnl\|CDD\|223288	COG0210, UvrD, Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair].	2.32774e-20
NZ_CP016482.1\|WP_065711996.1\|240088_240508_+\|transcriptional-regulator	gnl\|CDD\|227786	COG5499, COG5499, Predicted transcription regulator containing HTH domain [Transcription].	6.13228e-15
NZ_CP016482.1\|WP_065711994.1\|237398_239459_+\|DNA-phosphorothioation-associated-putative-methyltransferase	gnl\|CDD\|274979	TIGR04096, conserved_hypothetical_protein, DNA phosphorothioation-associated putative methyltransferase. Members of this protein family show distant local sequence similarity to a number of S-adenosyl-methionine-dependent methyltransferases. The family is identified by Partial Phylogenetic Profiling as closely tied to the DNA phosphorothioation system (dnd), and members are found adjacent to dnd genes in at least 13 species (Streptomyces lividans TK24, Shewanella frigidimarina NCIMB 400, Mycobacterium abscessus ATCC 19977, Nostoc punctiforme PCC 73102, Vibrio fischeri MJ11, etc.). The DNA phosphorothioation enables a novel form of restriction enzyme activity. Most members of this family appear in species with the DNA phosphorothioation system. [DNA metabolism, Restriction/modification].	0
NZ_CP016482.1\|WP_084449089.1\|241034_241844_+\|hypothetical-protein	gnl\|CDD\|225973	COG3440, COG3440, Predicted restriction endonuclease [Defense mechanisms].	1.96722e-66
NZ_CP016482.1\|WP_084449090.1\|246553_247075_+\|DUF2442-domain-containing-protein	gnl\|CDD\|378424	pfam10387, DUF2442, Protein of unknown function (DUF2442). This family of bacterial and fungal proteins has several members annotated as being putative molybdopterin-guanine dinucleotide biosynthesis protein A; however this could not be verified. Hence the function is not known. This family also includes the DUF3532 that was found to be related and was merged into this family. Members of this family also fall into the NE0471 N-terminal domain-like superfamily, a family of proteins with a unique fold in SCOP:143880.	6.91206e-13
NZ_CP016482.1\|WP_065711995.1\|239627_239948_+\|type-II-toxin-antitoxin-system-HigB-family-toxin	gnl\|CDD\|378301	pfam09907, HigB_toxin, HigB_toxin, RelE-like toxic component of a toxin-antitoxin system. HigB_toxin is a family of RelE-like prokaryotic proteins that function as mRNA interferases. HigB cleaves translated mRNA only, and cleavage depended on translation of the target RNAs. HigB belongs to the RelE super-family of RNases. The toxin-antitoxin gene-pair is induced by environmental stress factors.	1.09251e-30
NZ_CP016482.1\|WP_084449078.1\|243712_244126_-\|hypothetical-protein	gnl\|CDD\|350194	cd18807, SF1_C_UvrD, C-terminal helicase domain of UvrD family helicases. UvrD is a highly conserved helicase involved in mismatch repair, nucleotide excision repair, and recombinational repair. It plays a critical role in maintaining genomic stability and facilitating DNA lesion repair in many prokaryotic species including Helicobacter pylori and Escherichia coli. This family also includes ATP-dependent helicase/nuclease AddA and helicase/nuclease RecBCD subunit RecB, among others. UvrD family helicases are DEAD-like helicases belonging to superfamily (SF)1, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. Similar to SF2 helicases, SF1 helicases do not form toroidal structures like SF3-6 helicases. Their helicase core consists of two similar protein domains that resemble the fold of the recombination protein RecA. This model describes the C-terminal domain, also called HelicC.	1.19287e-11
NZ_CP016482.1\|WP_049761775.1\|228133_228724_+\|hypothetical-protein	gnl\|CDD\|224117	COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning].	0.000244885
NZ_CP016482.1\|WP_065711988.1\|231430_232612_+\|pentapeptide-repeat-containing-protein	gnl\|CDD\|224276	COG1357, COG1357, Pentapeptide repeats containing protein [Function unknown].	2.16769e-25
NZ_CP016482.1\|WP_065711992.1\|234945_235932_+\|CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|376633	pfam01867, Cas_Cas1, CRISPR associated protein Cas1. Clustered regularly interspaced short palindromic repeats (CRISPRs) are a family of DNA direct repeats found in many prokaryotic genomes. This family of proteins corresponds to Cas1, a CRISPR-associated protein. Cas1 may be involved in linking DNA segments to CRISPR.	3.71456e-112
NZ_CP016482.1\|WP_065711993.1\|235931_236210_+\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	9.43647e-34
NZ_CP016482.1\|WP_065711989.1\|232867_234094_-\|WYL-domain-containing-protein	gnl\|CDD\|379100	pfam13280, WYL, WYL domain. WYL is a Sm-like SH3 beta-barrel fold containing domain. It is a member of the WYL-like superfamily, named for three conserved amino acids found in a subset of the superfamily. However, these residues are not strongly conserved throughout the family. Rather, the conservation pattern includes four basic residues and a position often occupied by a cysteine, which are predicted to line a ligand-binding groove typical of the Sm-like SH3 beta-barrels. A WYL domain protein (sll7009) is a negative regulator of the I-D CRISPR-Cas system in Synechocystis sp. It is predicted to be a ligand-sensing domain that could bind negatively charged ligands, such as nucleotides or nucleic acid fragments, to regulate CRISPR-Cas and other defense systems such as the abortive infection AbiG system.	4.17542e-11
NZ_CP016482.1\|WP_084449079.1\|245349_246357_+\|DNA-phosphorothioation-system-sulfurtransferase-DndC	gnl\|CDD\|235877	PRK06850, PRK06850, hypothetical protein; Provisional.	3.65548e-160

>NZ_CP016482.1|WP_065711993.1|235931_236210_+|CRISPR-associated-endonuclease-Cas2
MFYLVAYDISDNKRRKKIADLLEGYGVRVQYSVFECHLSPKKYKELKKRLSRYYKEDQGDSLRFYPISSHTLSQVEIWGLPSLTDPPSSMII
>NZ_CP016482.1|WP_065711992.1|234945_235932_+|CRISPR-associated-endonuclease-Cas1
MRTLYVSEQGCYVRLRQEYLTVWRKQDCLTEIQLPQLEQVLIFGKSQLSTQAIRACLWRDIPIVFLSRMGFCYGRIMALERGYRHLSRYQQALAPVDKLTVARAIAGAKLQNSRVILQRQQRKRPLEPVAFAIETLGYLRQQISMANSVERIMGLEGAAAASYFNALGYCLRNEAFPFMGRSRQPPLNPVNALLSFGYQVLWNHLFTLIEIRGLDPYQGCLHQGSERHGALVSDLIEEFRAPLVDSLVLYLVNKNIIKPDHFIYRDGGCFLNQAGRKVYLSTFVQQMETTISLEDRQEPRWHLLTRQVRAYQNFVYRPVLGYAPYEIR
>NZ_CP016482.1|WP_065711991.1|234652_234949_+|hypothetical-protein
MYLSSRAIFVRNFAAALVNGAITLIILLIAPLGLAAVIMNTFLVGLSTFLVCSAMDLVSAWLLGGATPPQSLGATRRGDLTQTHRQKDIYPYRDRHDQ
>NZ_CP016482.1|WP_157094672.1|234251_234473_+|hypothetical-protein
MSVVGAIAMNSQEWFKVCTSVAIIVWGFSTAGAIAQENQVCHYDRCYLDGGSKVLCRVLVLGSLGIATSILRS
>NZ_CP016482.1|WP_065711989.1|232867_234094_-|WYL-domain-containing-protein
MPKVSKTHPYSDQKSFDRLLILITALIRFPGVGCPDVDGMGNREEHHNALAAVQEKWQAIARELGIDFRPNYPSLATIRKDFSFLRKYRILENRMYRWGYYLGTGVFSAADLQLALNGMGAIAHDLGDFRYRQTLEKIQRYLRGFDFKELDPTYPIRQNLNHPVNQTDPELMMAQGEYRHTLFHYLPDLETAIWKGQKIEISRHSSLYTEKYLGLQRVWPLQLIFYHVAWYLLYEDCQNGCLVVGRLNRFAEHFRIIDPQGRGLDQQRERLAIAHQLLAQGWGLRLGTAEEQQAELQGTAELIPIKVRFFDGAAMITLEAEQRHLSQRIRKGPKASRGYQPKYVDYSLELPRRSIPEFMQWLRRYEHNIQILTPDFLIKQHYQQAQKILKRYELETSTHKKHDVRADL
>NZ_CP016482.1|WP_065711988.1|231430_232612_+|pentapeptide-repeat-containing-protein
MKRFVRTVIQGLDTLIFWHRTAPFRPTFSKERLNNAQFKQAIQGDRRDFSRVVFVGVDFSQYSLQGFVFYQADFRLSNLSAPGTNLAGAELTGALLQNVNLAGANLENAILCHANLEGANLANCNLKDANLTAANLSNALLNQAQLTGAILVQAKAQGANLKEIQGQGLNAHSADLRGVNLSQSILNAAVFSQAQLGAANIAHSQLQNSNFAEIQAPQLNGVGCDLSGAELQEANLQGANLQDAVLKRTMLQQSNLAGSQWARADLTHATLSGANLSGCVFDNANLNGANLAKAAMKEANLNHAYCAGINAAGANLAGSNLANADLRDANLQGANLGRVNCAWADLRGANLLGIQSTDLNLENADLTEASISGLDNIAAMTWLPKEYSVKNSE
>NZ_CP016482.1|WP_065711987.1|230736_231426_+|hypothetical-protein
MTLSYPTQSSPGPNSALLDHIEATGEVDECPELALLVAELMQQEAEQQDSPEITSIDPAAIATYEQDLSIQRTALKNHCRQLYQALSTIETTPEASFTGAPAEIQDHIEQIQQVIMPIMNLSYRYHDILQTSDRRDGITHCYYTRGLTYCTHFIAQKASVTAITTELNTALRPTILLARIYRYLDQLPSLYDALSNRLLQTLWEQVPSEAESASLFFTQPTESPNQEEI
>NZ_CP016482.1|WP_065711986.1|229559_230711_+|hypothetical-protein
MQTPIPQTYPSKLRFDALPSSEDLSSSVQAARKTTLFLLKCAFVCHPKDLHGTAIVTKEVKQRARLNASLITISSLINTIGITPFILIALSGFGIGTIPAAAVVLGGLNAASNHCGAIAARHAPGYRANAWCGLSGFLMLNTLLTVFTGPGIVMFTNKPAVQQQLATSIIEEQRERLDVLKPADELDDLETQINEAQTSLQKIVIEEGEVASRENPEWQRLHLSLYGTYEERDTDWTTVKTPNLPLTQKLERLETENLAAYNAAKANLDERLSRRTQYGNDVQFLQAEMPDHFSSNFQPNQELKSPADGAAIATELFTTDLKAGRFERLAFPMLMAGISIALSATACVLTYTFSRSPAVQDSFDPQKKALVRKAIQMLRQRSQ
>NZ_CP016482.1|WP_065711985.1|228759_229155_+|hypothetical-protein
MSRFSKLIDQLEDLDQQDLRNTAKVFAITAELYERLQQVVEAQKEPPPAQIPGEQISEALIKERYGSYNEAYRAYQQTYHIKCSRGWKHLLPQVKDLPMPQTQTERIEQLETTVQTLSEIVMNLVPPPGSS
>NZ_CP016482.1|WP_049761775.1|228133_228724_+|hypothetical-protein
MDGQENFEELIKRLYEMARENPDDEDLQAIVELIKFLRRSRGSLQSWNHRYRSDITNLQDEVNDQMLTNESLQQDLLRAQQEMQQLALEKQRLAQEREKIRAELKEIDREVKVAAAKVRSSKSLYGKFSIVWNFLQSTFFSDDPQDFGKIEPGNDDDPDIPPSAGPVDPNPNPNSGGDKPWMSSSRADIQRDLLDR
>NZ_CP016482.1|WP_065711994.1|237398_239459_+|DNA-phosphorothioation-associated-putative-methyltransferase
MIRETFHFATVQSQLQQLPFGKKLPTALYLHISALKYLPPELQDYEAIARSLFPDKTFPITLIKFNTSEPKVSYLDYPDFDIDPHPALKQSIQVNLGVGSYQVRQYGDNPPILHRKETFVHPTYPHYATFTQLTQAEEKLGLLADSHNIGYQQQWEKKLQHFQVTIKDHRLLEIKDSEQQSPKIDRHKAAIIRRQMSRPVRSLLEANLLTEGMTFFDYGCGHGEDLKFIAEKGFQVQGWDPFYKPDNEKSPADVVNLGYVINVIENPAERREALVKAWALTQRILVVSAQVLIADGGYGQVAYGDGVITSRNTFQKYYDQEELKLYIDQVLGVDAVPVALGIYFVFRDEAQAETFRASRFRSRATTPRIRLSVKRFEDYQSLLQPLMTFITERGRLPKKGELPEETAICAEFRTLIRAFKVIEQATDAEEWQRIAEQRKSDIQIYLALSKFAKRPKFSHLDPTLQTDIKVLFGTYKQACLLSDMMLFSLGDLQNLADIAQESKIGICSNKALLVHISALEQLDPLLRLYEGCASRTVGRLENVSLVRFYLHEPKIAYISCADFDDDLHPRWQIAMQIGLQDLKVRYKEYDPDFAPVVQRKDRLVGQDYPRYEKFAKLSQQEEDWGLLENWSEIQLWSGWQKVLRETGVEFKGSRLQWRQDADSYQQKIVKSRIRSRQRQRQKEKDN
>NZ_CP016482.1|WP_065711995.1|239627_239948_+|type-II-toxin-antitoxin-system-HigB-family-toxin
MHIISKTALKQFWEKHPNAKASLTAWYKIASHSKWKHLDDVRQTFPHADLVGQLTVFNIGGNNYRLITKIVFPTNESNIGRVYIRAVLTHADYSKGNWKKDSWFKS
>NZ_CP016482.1|WP_065711996.1|240088_240508_+|transcriptional-regulator
MTHTYLELIQSFPPRPIHSATDFEATQAVVNNLLDKELLTADEADYLEVLGTLIYDYEQQQEDLIPDIYGVELLRVLMEERELKQKDLVSIFKTESIVSAVLNGKRQLTTRHIQELAAFFHVSPATFFPANFSENFLAA
>NZ_CP016482.1|WP_157094673.1|240627_240864_-|hypothetical-protein
MAAYVERYWYIAQSHRDYCGVGFTWLKEEEAYYYCHFYNVHSYITDNPNSGDHSSRTMRNKAIATADSLTHLQNFRDW
>NZ_CP016482.1|WP_084449089.1|241034_241844_+|hypothetical-protein
MLLSVMEQIEQKHITVNRIYPNASLIATFSKYWSYLAGENHRNSMHLPFFYLKSSKFWHLKVKAGLETAIKGFRPKSVNTLTALIDYAYLDPELFDLLQNVGDRSVLILTLLEKWFPDKQDQIRKLFQIDAFKDFQDRLRESGGKVYDVSDDEVKDDNLVIVRDTAFRRNVVANYNYQCCFCGMRVLDLKGQNIVDGSHIKPFSEFRDDRFDNGLSLCKNHHWAFDRGWFSIDEKYRIIVSKDLDEITPYNRAIKDFGGTKRVMTVLLR
>NZ_CP016482.1|WP_157094674.1|242675_243716_+|hypothetical-protein
MADNKMIKYRFAKGSDNQIIDINDLSRETKNTSKSFYCLGCNNEIIPVLGEKRVKHFRHKHVEQNCSQETYLHHLLKYLFYDVYSKFLESQEPFLIEIDVSNQCTHYQEEFCQACPWGTSRKTFDITKYFKSIALETKLDNFIPDILLKSSNNDYIFVEIAVTHKCDEKKIDSGYRIIEINIETEEESGQILQKYIRESEKNLFYNFKRDNFGDFCKGDCIQKPESTSSIAKYQIFVVYQNGSAILWSRNFDEFQGLKKSKTIAYTKLVPFDFTKEDKREYIKEVYFKELDSAVKMDITIKSCFLCTYNITDHSKSDETIFCGVINSRIEDKVALQCPHFSPKTLS
>NZ_CP016482.1|WP_084449078.1|243712_244126_-|hypothetical-protein
MKIQDFVRLYLKNKIEQIKHVSNSNNQIEKIKDYCRGINLCYEGFPEARSVKELQDNILSLFKQGRGEVTLSTIHKAKGIESNRVFLLLSDQMPFSWENMRDWEKEQELNLTYVALTRAKKVLFLVNTPKNLLESLH
>NZ_CP016482.1|WP_065712001.1|244103_245246_-|ATP-dependent-helicase
MNFAPSQYQRAIFNWVQNGNGHALIEAVAGSGKTTTLIKASQLIYNKRILFCAFNKHIQQEISHKISHHNSDIKTVHSIGFGCISRYLKGRIQPVEQYKYSALVKRDFYYAIEGDLQAYLAQFSKNEQNIKKNKMFTELEEFIKYIRMTLTNPDNTQEIQDLIEHFSLETEYLDIFLPYVREIIDRGEEIARIERVIDYTDMVWLPYYWSLKPQQYEWIFVDEAQDLNKASLDLILKSCSKNGRIIFVGDEKQAIYGFSGADSQSIKNIQKVTGAQRFPLSICYRCPKSHIKLSKDIVPHIEAAPDVIYGFVKKIDEDEMLSKIQTTDLVLCRLNYPLIRTALDLISRKIPASITRQNVADAMIEILFEIEAINKNTRFC
>NZ_CP016482.1|WP_084449079.1|245349_246357_+|DNA-phosphorothioation-system-sulfurtransferase-DndC
MIYSPIEDWTNDEVWIYLNQFPNPWGHDNKELFTLYQGATADNECPLFIDTSTPSCGDSRFGCWVCTMVDQDKSMTAMILNDDDKAWMEPLLDIRNELDLKDDGDRRDFRRIWGGVQIFERRQEDGTTKPAPIPGPYTKQWREHWLRRVLSTQTELRRTAPEPMRDITLIDLEELHAIRQIWLEEKHEFDDSLPRIYQETTGESFPLAASESSLLGSEEWDVLTEICQDDPMHLELMASLLDTERQYRTMSKRIGIFDALEKCFDSSSRTEEEARCEADPCEIAQAQRRYQAKRALNDPEEFKRILQEDDPAQLDLTQVKPQTSSWAAAKFGKHI
>NZ_CP016482.1|WP_084449090.1|246553_247075_+|DUF2442-domain-containing-protein
MTSTETKWQKDFSEEALAAGIAQAKTAAQQAEATEPCAKNAYYDGDRQLLVIELTNGAIFSFPPHLTQGLQQATPEQLNDCWLDASGRSIHWESLDVDFSIVGLMTGIFGTQAWMQEIGRRGGQAKSPAKRKAARANGKKGGRPLKTATIEDLFFSSDILQSFNHAELDGDRP

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Crispr_ID: NZ_CP016482_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP016482_3

261902-264744

TypeI-D

Consensus_repeat	Method
CTTTCCAACCACTAAATCCCGATCACGGGACTGAAAC	PILER-CR
CTTTCCAACCACTAAATCCCGATCACGGGACTGAAAC	CRISPRCasFinder
CTTTCCAACCACTAAATCCCGATCACGGGACTGAAAC	CRT
CTTTCCAACCACTAAATCCCGACCACGGGACTGAAAC	PILER-CR
CTTTCCAACCACTAAATCCCGATCACGGGACTGAAAC	PILER-CR

38 spacers

cas2,cas1,cas4,cas6,csc1gr5,csc2gr7,cas10d,cas3,WYL

The CRISPR arrays of NZ_CP016482_3

>merge|NZ_CP016482|3|261902-264744|PILER-CR,CRISPRCasFinder,CRT,PILER-CR,PILER-CR
CTTTCCAACCACTAAATCCCGATCACGGGACTGAAACACTCGCCGAAGCCTGCACGGGCATCAAAAAGAGGCTTTCCAACCACTAAATCCCGATCACGGGACTGAAACTCTCTCCAATCACAGAGGTTTGGGATTATTTCCCGACTTTCCAACCACTAAATCCCGATCACGGGACTGAAACAAAACAAACCAGCGGGAACCCCGTTAGATGCCCCTGCTTTCCAACCACTAAATCCCGATCACGGGACTGAAACTATAACCAACTATTGAAAGAGCGCTCTATCCTGCCTTTCCAACCACTAAATCCCGATCACGGGACTGAAACTTATGCCCTGACTGGGTTTCAGACGAACTGATCCGCTGATCCGCTTTCTTTCCAACCACTAAATCCCGATCACGGGACTGAAACTATTTTTAGGGGAGGGGCGATCTCCCCAGATATTTCTTTCCAACCACTAAATCCCGATCACGGGACTGAAACCGAGAGATCGTGGTAACCGCCCTCAACAATGCGAGAGCTTTCCAACCACTAAATCCCGATCACGGGACTGAAACGAAAAAAATGAACATTCCCAAAGAGGTTCAGGCCAACTTTCCAACCACTAAATCCCGATCACGGGACTGAAACCAGTTTTTACCCCAGCTTCCGAGTGAGTGGGCATCCTTTCCAACCACTAAATCCCGATCACGGGACTGAAACTAAACACTTGGGTGTTTACGTCTACCACCGAGCGAAGTCGACTTTCCAACCACTAAATCCCGATCACGGGACTGAAACCCAACTCATTGATTTTCCTTTCAGCCCTGGCATTAGCCTTTCCAACCACTAAATCCCGATCACGGGACTGAAACTAAGATGGCGACGTTTTTTCGATACCGGGCCAAGGATGCTTTCCAACCACTAAATCCCGATCACGGGACTGAAACCAAGCACTGCGTTTCCGTCGCATTGTGCGCTGGCTAACTTTCCAACCACTAAATCCCGATCACGGGACTGAAACAGAGGATGGCCTGGGCCTCTGGCAATCAGACTGGTTCCTTTCCAACCACTAAATCCCGATCACGGGACTGAAACGGGCTTTTTGCTTTTTAAGACATTAAGCCAAGCGGATTCTTTCCAACCACTAAATCCCGATCACGGGACTGAAACGCCTTCTACAATGACAATTGTCCGTGAAGCTTGCCCTGCTTTCCAACCACTAAATCCCGATCACGGGACTGAAACTAATTTTGCTTCCTCTGCTGCTTTCTTTGTGGTGCTTTCCAACCACTAAATCCCGATCACGGGACTGAAACTTTATTTTGAGTCTGCCTATCAGTCTTACATCGATTCTTTCCAACCACTAAATCCCGATCACGGGACTGAAACAAAAATGTGGGCATCGCACCAGACTGCAAAGTCAGAAGCTTTCCAACCACTAAATCCCGATCACGGGACTGAAACGCTCAATCAACCTACGATTTTTAAGGAGAAAACCTTTCCAACCACTAAATCCCGATCACGGGACTGAAACGAGGTGCCCAACCAGACGGTGAACAAGGCAGTAAACTTTCCAACCACTAAATCCCGATCACGGGACTGAAACGTGCGCCATGTGCGGGGGACTCAGGACGAATTCGTCTTTCCAACCACTAAATCCCGACCACGGGACTGAAACAATGTAATCATGTGTCGTGGCGTGGATATGGCGCTCTTTCCAACCACTAAATCCCGACCACGGGACTGAAACCTGTTTAATTGTTTTCCCAGCTTTGACGACACTTACTTTCCAACCACTAAATCCCGACCACGGGACTGAAACACCTCTAGAGTCGAAAGACCACCCTTAATAAATTTCAACTTTCCAACCACTAAATCCCGACCACGGGACTGAAACCACAAATGCTCTTTTAACTAATCCTGCCTTGGCTGCTTTCCAACCACTAAATCCCGACCACGGGACTGAAACCTTTCTGCTGAAAAATTATGCTTCTGTCTATATTTTAGACATGGCTTTCCAACCACTAAATCCCGACCACGGGACTGAAACCTTTCTGCTGAGGGCAAAATCACACAAGCAAATGCTTTCCAACCACTAAATCCCGACCACGGGACTGAAACTGATGTTGTGATGCACATTGTTAAGAAAGATGCCCGCTTTCCAACCACTAAATCCCGACCACGGGACTGAAACTGAGGAAATCGACGTTCTCCGGGCTGAAGTGGACTCTTTCCAACCACTAAATCCCGACCACGGGACTGAAACTTTTCCTGGCTTTATTGTGGGGGCTGTCCTTGGTGATTCTTTCCAACCACTAAATCCCGATCACGGGACTGAAACCAGTTTTTACCCCAGCTTCCGAGTGAGTGGGCATCCTTTCCAACCACTAAATCCCGATCACGGGACTGAAACTAAACACTTGGGTGTTTACGTCTACCACCGAGCGAAGTCGACTTTCCAACCACTAAATCCCGATCACGGGACTGAAACCCAACTCATTGATTTTCCTTTCAGCCCTGGCATTAGCCTTTCCAACCACTAAATCCCGATCACGGGACTGAAACTAAGATGGCGACGTTTTTTCGATACCGGGCCAAGGATGCTTTCCAACCACTAAATCCCGATCACGGGACTGAAACCAAGCACTGCGTTTCCGTCGCATTGTGCGCTGGCTAACTTTCCAACCACTAAATCCCGATCACGGGACTGAAACAGAGGATGGCCTGGGCCTCTGGCAATCAGACTGGTTCCTTTCCAACCACTAAATCCCGATCACGGGACTGAAACGGGCTTTTTGCTTTTTAAGACATTAAGCCAAGCGGATTCTTTCCAACCACTAAATCCCGATCACGGGACTGAAAC

>NZ_CP016482|3|3|261902-263270|PILER-CR
CTTTCCAACCACTAAATCCCGATCACGGGACTGAAAC	ACTCGCCGAAGCCTGCACGGGCATCAAAAAGAGG
CTTTCCAACCACTAAATCCCGATCACGGGACTGAAAC	TCTCTCCAATCACAGAGGTTTGGGATTATTTCCCGA
CTTTCCAACCACTAAATCCCGATCACGGGACTGAAAC	AAAACAAACCAGCGGGAACCCCGTTAGATGCCCCTG
CTTTCCAACCACTAAATCCCGATCACGGGACTGAAAC	TATAACCAACTATTGAAAGAGCGCTCTATCCTGC
CTTTCCAACCACTAAATCCCGATCACGGGACTGAAAC	TTATGCCCTGACTGGGTTTCAGACGAACTGATCCGCTGATCCGCTTT
CTTTCCAACCACTAAATCCCGATCACGGGACTGAAAC	TATTTTTAGGGGAGGGGCGATCTCCCCAGATATTT
CTTTCCAACCACTAAATCCCGATCACGGGACTGAAAC	CGAGAGATCGTGGTAACCGCCCTCAACAATGCGAGAG
CTTTCCAACCACTAAATCCCGATCACGGGACTGAAAC	GAAAAAAATGAACATTCCCAAAGAGGTTCAGGCCAA
CTTTCCAACCACTAAATCCCGATCACGGGACTGAAAC	CAGTTTTTACCCCAGCTTCCGAGTGAGTGGGCATC
CTTTCCAACCACTAAATCCCGATCACGGGACTGAAAC	TAAACACTTGGGTGTTTACGTCTACCACCGAGCGAAGTCGA
CTTTCCAACCACTAAATCCCGATCACGGGACTGAAAC	CCAACTCATTGATTTTCCTTTCAGCCCTGGCATTAGC
CTTTCCAACCACTAAATCCCGATCACGGGACTGAAAC	TAAGATGGCGACGTTTTTTCGATACCGGGCCAAGGATG
CTTTCCAACCACTAAATCCCGATCACGGGACTGAAAC	CAAGCACTGCGTTTCCGTCGCATTGTGCGCTGGCTAA
CTTTCCAACCACTAAATCCCGATCACGGGACTGAAAC	AGAGGATGGCCTGGGCCTCTGGCAATCAGACTGGTTC
CTTTCCAACCACTAAATCCCGATCACGGGACTGAAAC	GGGCTTTTTGCTTTTTAAGACATTAAGCCAAGCGGATT
CTTTCCAACCACTAAATCCCGATCACGGGACTGAAAC	GCCTTCTACAATGACAATTGTCCGTGAAGCTTGCCCTG
CTTTCCAACCACTAAATCCCGATCACGGGACTGAAAC	TAATTTTGCTTCCTCTGCTGCTTTCTTTGTGGTG
CTTTCCAACCACTAAATCCCGATCACGGGACTGAAAC	TTTATTTTGAGTCTGCCTATCAGTCTTACATCGATT
CTTTCCAACCACTAAATCCCGATCACGGGACTGAAACAAAAATGTGGGCATCGCACCAGACTGCAAAGTCAGAAGCTTTCCAACCACTAAATCCCGATCACGGGACTGAAACGCTCAATCAACCTACGATTTTTAAGGAGAAAACCTTTCCAACCACTAAATCCCGATCACGGGACTGAAAC	GAGGTGCCCAACCAGACGGTGAACAAGGCAGTAAA
CTTTCCAACCACTAAATCCCGATCACGGGACTGAAAC	GTGCGCCATGTGCGGGGGACTCAGGACGAATTCGT
CTTTCCAACCACTAAATCCCGACCACGGGACTGAAAC	AATGTAATCATGTGTCGTGGCGTGGATATGGCGCT
CTTTCCAACCACTAAATCCCGACCACGGGACTGAAAC	CTGTTTAATTGTTTTCCCAGCTTTGACGACACTTA
CTTTCCAACCACTAAATCCCGACCACGGGACTGAAAC	ACCTCTAGAGTCGAAAGACCACCCTTAATAAATTTCAA
CTTTCCAACCACTAAATCCCGACCACGGGACTGAAACCACAAATGCTCTTTTAACTAATCCTGCCTTGGCTGCTTTCCAACCACTAAATCCCGACCACGGGACTGAAAC	CTTTCTGCTGAAAAATTATGCTTCTGTCTATATTTTAGACATGG
CTTTCCAACCACTAAATCCCGACCACGGGACTGAAAC	CTTTCTGCTGAGGGCAAAATCACACAAGCAAATG
CTTTCCAACCACTAAATCCCGACCACGGGACTGAAAC	TGATGTTGTGATGCACATTGTTAAGAAAGATGCCCG
CTTTCCAACCACTAAATCCCGACCACGGGACTGAAAC	TGAGGAAATCGACGTTCTCCGGGCTGAAGTGGACT
CTTTCCAACCACTAAATCCCGACCACGGGACTGAAAC	TTTTCCTGGCTTTATTGTGGGGGCTGTCCTTGGTGATT
CTTTCCAACCACTAAATCCCGATCACGGGACTGAAAC	CAGTTTTTACCCCAGCTTCCGAGTGAGTGGGCATC
CTTTCCAACCACTAAATCCCGATCACGGGACTGAAAC	TAAACACTTGGGTGTTTACGTCTACCACCGAGCGAAGTCGA
CTTTCCAACCACTAAATCCCGATCACGGGACTGAAAC	CCAACTCATTGATTTTCCTTTCAGCCCTGGCATTAGC
CTTTCCAACCACTAAATCCCGATCACGGGACTGAAAC	TAAGATGGCGACGTTTTTTCGATACCGGGCCAAGGATG
CTTTCCAACCACTAAATCCCGATCACGGGACTGAAAC	CAAGCACTGCGTTTCCGTCGCATTGTGCGCTGGCTAA
CTTTCCAACCACTAAATCCCGATCACGGGACTGAAAC	AGAGGATGGCCTGGGCCTCTGGCAATCAGACTGGTTC


>NZ_CP016482|3|3|261902-264744|CRISPRCasFinder
CTTTCCAACCACTAAATCCCGATCACGGGACTGAAAC	ACTCGCCGAAGCCTGCACGGGCATCAAAAAGAGG
CTTTCCAACCACTAAATCCCGATCACGGGACTGAAAC	TCTCTCCAATCACAGAGGTTTGGGATTATTTCCCGA
CTTTCCAACCACTAAATCCCGATCACGGGACTGAAAC	AAAACAAACCAGCGGGAACCCCGTTAGATGCCCCTG
CTTTCCAACCACTAAATCCCGATCACGGGACTGAAAC	TATAACCAACTATTGAAAGAGCGCTCTATCCTGC
CTTTCCAACCACTAAATCCCGATCACGGGACTGAAAC	TTATGCCCTGACTGGGTTTCAGACGAACTGATCCGCTGATCCGCTTT
CTTTCCAACCACTAAATCCCGATCACGGGACTGAAAC	TATTTTTAGGGGAGGGGCGATCTCCCCAGATATTT
CTTTCCAACCACTAAATCCCGATCACGGGACTGAAAC	CGAGAGATCGTGGTAACCGCCCTCAACAATGCGAGAG
CTTTCCAACCACTAAATCCCGATCACGGGACTGAAAC	GAAAAAAATGAACATTCCCAAAGAGGTTCAGGCCAA
CTTTCCAACCACTAAATCCCGATCACGGGACTGAAAC	CAGTTTTTACCCCAGCTTCCGAGTGAGTGGGCATC
CTTTCCAACCACTAAATCCCGATCACGGGACTGAAAC	TAAACACTTGGGTGTTTACGTCTACCACCGAGCGAAGTCGA
CTTTCCAACCACTAAATCCCGATCACGGGACTGAAAC	CCAACTCATTGATTTTCCTTTCAGCCCTGGCATTAGC
CTTTCCAACCACTAAATCCCGATCACGGGACTGAAAC	TAAGATGGCGACGTTTTTTCGATACCGGGCCAAGGATG
CTTTCCAACCACTAAATCCCGATCACGGGACTGAAAC	CAAGCACTGCGTTTCCGTCGCATTGTGCGCTGGCTAA
CTTTCCAACCACTAAATCCCGATCACGGGACTGAAAC	AGAGGATGGCCTGGGCCTCTGGCAATCAGACTGGTTC
CTTTCCAACCACTAAATCCCGATCACGGGACTGAAAC	GGGCTTTTTGCTTTTTAAGACATTAAGCCAAGCGGATT
CTTTCCAACCACTAAATCCCGATCACGGGACTGAAAC	GCCTTCTACAATGACAATTGTCCGTGAAGCTTGCCCTG
CTTTCCAACCACTAAATCCCGATCACGGGACTGAAAC	TAATTTTGCTTCCTCTGCTGCTTTCTTTGTGGTG
CTTTCCAACCACTAAATCCCGATCACGGGACTGAAAC	TTTATTTTGAGTCTGCCTATCAGTCTTACATCGATT
CTTTCCAACCACTAAATCCCGATCACGGGACTGAAAC	AAAAATGTGGGCATCGCACCAGACTGCAAAGTCAGAAG
CTTTCCAACCACTAAATCCCGATCACGGGACTGAAAC	GCTCAATCAACCTACGATTTTTAAGGAGAAAAC
CTTTCCAACCACTAAATCCCGATCACGGGACTGAAAC	GAGGTGCCCAACCAGACGGTGAACAAGGCAGTAAA
CTTTCCAACCACTAAATCCCGATCACGGGACTGAAAC	GTGCGCCATGTGCGGGGGACTCAGGACGAATTCGT
CTTTCCAACCACTAAATCCCGACCACGGGACTGAAAC	AATGTAATCATGTGTCGTGGCGTGGATATGGCGCT
CTTTCCAACCACTAAATCCCGACCACGGGACTGAAAC	CTGTTTAATTGTTTTCCCAGCTTTGACGACACTTA
CTTTCCAACCACTAAATCCCGACCACGGGACTGAAAC	ACCTCTAGAGTCGAAAGACCACCCTTAATAAATTTCAA
CTTTCCAACCACTAAATCCCGACCACGGGACTGAAAC	CACAAATGCTCTTTTAACTAATCCTGCCTTGGCTG
CTTTCCAACCACTAAATCCCGACCACGGGACTGAAAC	CTTTCTGCTGAAAAATTATGCTTCTGTCTATATTTTAGACATGG
CTTTCCAACCACTAAATCCCGACCACGGGACTGAAAC	CTTTCTGCTGAGGGCAAAATCACACAAGCAAATG
CTTTCCAACCACTAAATCCCGACCACGGGACTGAAAC	TGATGTTGTGATGCACATTGTTAAGAAAGATGCCCG
CTTTCCAACCACTAAATCCCGACCACGGGACTGAAAC	TGAGGAAATCGACGTTCTCCGGGCTGAAGTGGACT
CTTTCCAACCACTAAATCCCGACCACGGGACTGAAAC	TTTTCCTGGCTTTATTGTGGGGGCTGTCCTTGGTGATT
CTTTCCAACCACTAAATCCCGATCACGGGACTGAAAC	CAGTTTTTACCCCAGCTTCCGAGTGAGTGGGCATC
CTTTCCAACCACTAAATCCCGATCACGGGACTGAAAC	TAAACACTTGGGTGTTTACGTCTACCACCGAGCGAAGTCGA
CTTTCCAACCACTAAATCCCGATCACGGGACTGAAAC	CCAACTCATTGATTTTCCTTTCAGCCCTGGCATTAGC
CTTTCCAACCACTAAATCCCGATCACGGGACTGAAAC	TAAGATGGCGACGTTTTTTCGATACCGGGCCAAGGATG
CTTTCCAACCACTAAATCCCGATCACGGGACTGAAAC	CAAGCACTGCGTTTCCGTCGCATTGTGCGCTGGCTAA
CTTTCCAACCACTAAATCCCGATCACGGGACTGAAAC	AGAGGATGGCCTGGGCCTCTGGCAATCAGACTGGTTC
CTTTCCAACCACTAAATCCCGATCACGGGACTGAAAC	GGGCTTTTTGCTTTTTAAGACATTAAGCCAAGCGGATT
CTTTCCAACCACTAAATCCCGATCACGGGACTGAAAC

>NZ_CP016482|3|3|261902-264744|CRT
CTTTCCAACCACTAAATCCCGATCACGGGACTGAAAC	ACTCGCCGAAGCCTGCACGGGCATCAAAAAGAGG
CTTTCCAACCACTAAATCCCGATCACGGGACTGAAAC	TCTCTCCAATCACAGAGGTTTGGGATTATTTCCCGA
CTTTCCAACCACTAAATCCCGATCACGGGACTGAAAC	AAAACAAACCAGCGGGAACCCCGTTAGATGCCCCTG
CTTTCCAACCACTAAATCCCGATCACGGGACTGAAAC	TATAACCAACTATTGAAAGAGCGCTCTATCCTGC
CTTTCCAACCACTAAATCCCGATCACGGGACTGAAAC	TTATGCCCTGACTGGGTTTCAGACGAACTGATCCGCTGATCCGCTTT
CTTTCCAACCACTAAATCCCGATCACGGGACTGAAAC	TATTTTTAGGGGAGGGGCGATCTCCCCAGATATTT
CTTTCCAACCACTAAATCCCGATCACGGGACTGAAAC	CGAGAGATCGTGGTAACCGCCCTCAACAATGCGAGAG
CTTTCCAACCACTAAATCCCGATCACGGGACTGAAAC	GAAAAAAATGAACATTCCCAAAGAGGTTCAGGCCAA
CTTTCCAACCACTAAATCCCGATCACGGGACTGAAAC	CAGTTTTTACCCCAGCTTCCGAGTGAGTGGGCATC
CTTTCCAACCACTAAATCCCGATCACGGGACTGAAAC	TAAACACTTGGGTGTTTACGTCTACCACCGAGCGAAGTCGA
CTTTCCAACCACTAAATCCCGATCACGGGACTGAAAC	CCAACTCATTGATTTTCCTTTCAGCCCTGGCATTAGC
CTTTCCAACCACTAAATCCCGATCACGGGACTGAAAC	TAAGATGGCGACGTTTTTTCGATACCGGGCCAAGGATG
CTTTCCAACCACTAAATCCCGATCACGGGACTGAAAC	CAAGCACTGCGTTTCCGTCGCATTGTGCGCTGGCTAA
CTTTCCAACCACTAAATCCCGATCACGGGACTGAAAC	AGAGGATGGCCTGGGCCTCTGGCAATCAGACTGGTTC
CTTTCCAACCACTAAATCCCGATCACGGGACTGAAAC	GGGCTTTTTGCTTTTTAAGACATTAAGCCAAGCGGATT
CTTTCCAACCACTAAATCCCGATCACGGGACTGAAAC	GCCTTCTACAATGACAATTGTCCGTGAAGCTTGCCCTG
CTTTCCAACCACTAAATCCCGATCACGGGACTGAAAC	TAATTTTGCTTCCTCTGCTGCTTTCTTTGTGGTG
CTTTCCAACCACTAAATCCCGATCACGGGACTGAAAC	TTTATTTTGAGTCTGCCTATCAGTCTTACATCGATT
CTTTCCAACCACTAAATCCCGATCACGGGACTGAAAC	AAAAATGTGGGCATCGCACCAGACTGCAAAGTCAGAAG
CTTTCCAACCACTAAATCCCGATCACGGGACTGAAAC	GCTCAATCAACCTACGATTTTTAAGGAGAAAAC
CTTTCCAACCACTAAATCCCGATCACGGGACTGAAAC	GAGGTGCCCAACCAGACGGTGAACAAGGCAGTAAA
CTTTCCAACCACTAAATCCCGATCACGGGACTGAAAC	GTGCGCCATGTGCGGGGGACTCAGGACGAATTCGT
CTTTCCAACCACTAAATCCCGACCACGGGACTGAAAC	AATGTAATCATGTGTCGTGGCGTGGATATGGCGCT
CTTTCCAACCACTAAATCCCGACCACGGGACTGAAAC	CTGTTTAATTGTTTTCCCAGCTTTGACGACACTTA
CTTTCCAACCACTAAATCCCGACCACGGGACTGAAAC	ACCTCTAGAGTCGAAAGACCACCCTTAATAAATTTCAA
CTTTCCAACCACTAAATCCCGACCACGGGACTGAAAC	CACAAATGCTCTTTTAACTAATCCTGCCTTGGCTG
CTTTCCAACCACTAAATCCCGACCACGGGACTGAAAC	CTTTCTGCTGAAAAATTATGCTTCTGTCTATATTTTAGACATGG
CTTTCCAACCACTAAATCCCGACCACGGGACTGAAAC	CTTTCTGCTGAGGGCAAAATCACACAAGCAAATG
CTTTCCAACCACTAAATCCCGACCACGGGACTGAAAC	TGATGTTGTGATGCACATTGTTAAGAAAGATGCCCG
CTTTCCAACCACTAAATCCCGACCACGGGACTGAAAC	TGAGGAAATCGACGTTCTCCGGGCTGAAGTGGACT
CTTTCCAACCACTAAATCCCGACCACGGGACTGAAAC	TTTTCCTGGCTTTATTGTGGGGGCTGTCCTTGGTGATT
CTTTCCAACCACTAAATCCCGATCACGGGACTGAAAC	CAGTTTTTACCCCAGCTTCCGAGTGAGTGGGCATC
CTTTCCAACCACTAAATCCCGATCACGGGACTGAAAC	TAAACACTTGGGTGTTTACGTCTACCACCGAGCGAAGTCGA
CTTTCCAACCACTAAATCCCGATCACGGGACTGAAAC	CCAACTCATTGATTTTCCTTTCAGCCCTGGCATTAGC
CTTTCCAACCACTAAATCCCGATCACGGGACTGAAAC	TAAGATGGCGACGTTTTTTCGATACCGGGCCAAGGATG
CTTTCCAACCACTAAATCCCGATCACGGGACTGAAAC	CAAGCACTGCGTTTCCGTCGCATTGTGCGCTGGCTAA
CTTTCCAACCACTAAATCCCGATCACGGGACTGAAAC	AGAGGATGGCCTGGGCCTCTGGCAATCAGACTGGTTC
CTTTCCAACCACTAAATCCCGATCACGGGACTGAAAC	GGGCTTTTTGCTTTTTAAGACATTAAGCCAAGCGGATT
CTTTCCAACCACTAAATCCCGATCACGGGACTGAAAC

>NZ_CP016482|3|4|263379-263778|PILER-CR
	ACTCGCCGAAGCCTGCACGGGCATCAAAAAGAGG
CTTTCCAACCACTAAATCCCGATCACGGGACTGAAAC	TCTCTCCAATCACAGAGGTTTGGGATTATTTCCCGA
CTTTCCAACCACTAAATCCCGATCACGGGACTGAAAC	AAAACAAACCAGCGGGAACCCCGTTAGATGCCCCTG
CTTTCCAACCACTAAATCCCGATCACGGGACTGAAAC	TATAACCAACTATTGAAAGAGCGCTCTATCCTGC
CTTTCCAACCACTAAATCCCGATCACGGGACTGAAAC	TTATGCCCTGACTGGGTTTCAGACGAACTGATCCGCTGATCCGCTTT
CTTTCCAACCACTAAATCCCGATCACGGGACTGAAAC	TATTTTTAGGGGAGGGGCGATCTCCCCAGATATTT
CTTTCCAACCACTAAATCCCGATCACGGGACTGAAAC	CGAGAGATCGTGGTAACCGCCCTCAACAATGCGAGAG
CTTTCCAACCACTAAATCCCGATCACGGGACTGAAAC	GAAAAAAATGAACATTCCCAAAGAGGTTCAGGCCAA
CTTTCCAACCACTAAATCCCGATCACGGGACTGAAAC	CAGTTTTTACCCCAGCTTCCGAGTGAGTGGGCATC
CTTTCCAACCACTAAATCCCGATCACGGGACTGAAAC	TAAACACTTGGGTGTTTACGTCTACCACCGAGCGAAGTCGA
CTTTCCAACCACTAAATCCCGATCACGGGACTGAAAC	CCAACTCATTGATTTTCCTTTCAGCCCTGGCATTAGC
CTTTCCAACCACTAAATCCCGATCACGGGACTGAAAC	TAAGATGGCGACGTTTTTTCGATACCGGGCCAAGGATG
CTTTCCAACCACTAAATCCCGATCACGGGACTGAAAC	CAAGCACTGCGTTTCCGTCGCATTGTGCGCTGGCTAA
CTTTCCAACCACTAAATCCCGATCACGGGACTGAAAC	AGAGGATGGCCTGGGCCTCTGGCAATCAGACTGGTTC
CTTTCCAACCACTAAATCCCGATCACGGGACTGAAAC	GGGCTTTTTGCTTTTTAAGACATTAAGCCAAGCGGATT
CTTTCCAACCACTAAATCCCGATCACGGGACTGAAAC	GCCTTCTACAATGACAATTGTCCGTGAAGCTTGCCCTG
CTTTCCAACCACTAAATCCCGATCACGGGACTGAAAC	TAATTTTGCTTCCTCTGCTGCTTTCTTTGTGGTG
CTTTCCAACCACTAAATCCCGATCACGGGACTGAAAC	TTTATTTTGAGTCTGCCTATCAGTCTTACATCGATT
CTTTCCAACCACTAAATCCCGATCACGGGACTGAAACAAAAATGTGGGCATCGCACCAGACTGCAAAGTCAGAAGCTTTCCAACCACTAAATCCCGATCACGGGACTGAAACGCTCAATCAACCTACGATTTTTAAGGAGAAAACCTTTCCAACCACTAAATCCCGATCACGGGACTGAAAC	GAGGTGCCCAACCAGACGGTGAACAAGGCAGTAAA
CTTTCCAACCACTAAATCCCGATCACGGGACTGAAAC	GTGCGCCATGTGCGGGGGACTCAGGACGAATTCGT
CTTTCCAACCACTAAATCCCGACCACGGGACTGAAAC	AATGTAATCATGTGTCGTGGCGTGGATATGGCGCT
CTTTCCAACCACTAAATCCCGACCACGGGACTGAAAC	CTGTTTAATTGTTTTCCCAGCTTTGACGACACTTA
CTTTCCAACCACTAAATCCCGACCACGGGACTGAAAC	ACCTCTAGAGTCGAAAGACCACCCTTAATAAATTTCAA
CTTTCCAACCACTAAATCCCGACCACGGGACTGAAACCACAAATGCTCTTTTAACTAATCCTGCCTTGGCTGCTTTCCAACCACTAAATCCCGACCACGGGACTGAAAC	CTTTCTGCTGAAAAATTATGCTTCTGTCTATATTTTAGACATGG
CTTTCCAACCACTAAATCCCGACCACGGGACTGAAAC	CTTTCTGCTGAGGGCAAAATCACACAAGCAAATG
CTTTCCAACCACTAAATCCCGACCACGGGACTGAAAC	TGATGTTGTGATGCACATTGTTAAGAAAGATGCCCG
CTTTCCAACCACTAAATCCCGACCACGGGACTGAAAC	TGAGGAAATCGACGTTCTCCGGGCTGAAGTGGACT
CTTTCCAACCACTAAATCCCGACCACGGGACTGAAAC	TTTTCCTGGCTTTATTGTGGGGGCTGTCCTTGGTGATT
CTTTCCAACCACTAAATCCCGATCACGGGACTGAAAC	CAGTTTTTACCCCAGCTTCCGAGTGAGTGGGCATC
CTTTCCAACCACTAAATCCCGATCACGGGACTGAAAC	TAAACACTTGGGTGTTTACGTCTACCACCGAGCGAAGTCGA
CTTTCCAACCACTAAATCCCGATCACGGGACTGAAAC	CCAACTCATTGATTTTCCTTTCAGCCCTGGCATTAGC
CTTTCCAACCACTAAATCCCGATCACGGGACTGAAAC	TAAGATGGCGACGTTTTTTCGATACCGGGCCAAGGATG
CTTTCCAACCACTAAATCCCGATCACGGGACTGAAAC	CAAGCACTGCGTTTCCGTCGCATTGTGCGCTGGCTAA
CTTTCCAACCACTAAATCCCGATCACGGGACTGAAAC	AGAGGATGGCCTGGGCCTCTGGCAATCAGACTGGTTC


>NZ_CP016482|3|5|263814-264669|PILER-CR
	ACTCGCCGAAGCCTGCACGGGCATCAAAAAGAGG
CTTTCCAACCACTAAATCCCGATCACGGGACTGAAAC	TCTCTCCAATCACAGAGGTTTGGGATTATTTCCCGA
CTTTCCAACCACTAAATCCCGATCACGGGACTGAAAC	AAAACAAACCAGCGGGAACCCCGTTAGATGCCCCTG
CTTTCCAACCACTAAATCCCGATCACGGGACTGAAAC	TATAACCAACTATTGAAAGAGCGCTCTATCCTGC
CTTTCCAACCACTAAATCCCGATCACGGGACTGAAAC	TTATGCCCTGACTGGGTTTCAGACGAACTGATCCGCTGATCCGCTTT
CTTTCCAACCACTAAATCCCGATCACGGGACTGAAAC	TATTTTTAGGGGAGGGGCGATCTCCCCAGATATTT
CTTTCCAACCACTAAATCCCGATCACGGGACTGAAAC	CGAGAGATCGTGGTAACCGCCCTCAACAATGCGAGAG
CTTTCCAACCACTAAATCCCGATCACGGGACTGAAAC	GAAAAAAATGAACATTCCCAAAGAGGTTCAGGCCAA
CTTTCCAACCACTAAATCCCGATCACGGGACTGAAAC	CAGTTTTTACCCCAGCTTCCGAGTGAGTGGGCATC
CTTTCCAACCACTAAATCCCGATCACGGGACTGAAAC	TAAACACTTGGGTGTTTACGTCTACCACCGAGCGAAGTCGA
CTTTCCAACCACTAAATCCCGATCACGGGACTGAAAC	CCAACTCATTGATTTTCCTTTCAGCCCTGGCATTAGC
CTTTCCAACCACTAAATCCCGATCACGGGACTGAAAC	TAAGATGGCGACGTTTTTTCGATACCGGGCCAAGGATG
CTTTCCAACCACTAAATCCCGATCACGGGACTGAAAC	CAAGCACTGCGTTTCCGTCGCATTGTGCGCTGGCTAA
CTTTCCAACCACTAAATCCCGATCACGGGACTGAAAC	AGAGGATGGCCTGGGCCTCTGGCAATCAGACTGGTTC
CTTTCCAACCACTAAATCCCGATCACGGGACTGAAAC	GGGCTTTTTGCTTTTTAAGACATTAAGCCAAGCGGATT
CTTTCCAACCACTAAATCCCGATCACGGGACTGAAAC	GCCTTCTACAATGACAATTGTCCGTGAAGCTTGCCCTG
CTTTCCAACCACTAAATCCCGATCACGGGACTGAAAC	TAATTTTGCTTCCTCTGCTGCTTTCTTTGTGGTG
CTTTCCAACCACTAAATCCCGATCACGGGACTGAAAC	TTTATTTTGAGTCTGCCTATCAGTCTTACATCGATT
CTTTCCAACCACTAAATCCCGATCACGGGACTGAAACAAAAATGTGGGCATCGCACCAGACTGCAAAGTCAGAAGCTTTCCAACCACTAAATCCCGATCACGGGACTGAAACGCTCAATCAACCTACGATTTTTAAGGAGAAAACCTTTCCAACCACTAAATCCCGATCACGGGACTGAAAC	GAGGTGCCCAACCAGACGGTGAACAAGGCAGTAAA
CTTTCCAACCACTAAATCCCGATCACGGGACTGAAAC	GTGCGCCATGTGCGGGGGACTCAGGACGAATTCGT
CTTTCCAACCACTAAATCCCGACCACGGGACTGAAAC	AATGTAATCATGTGTCGTGGCGTGGATATGGCGCT
CTTTCCAACCACTAAATCCCGACCACGGGACTGAAAC	CTGTTTAATTGTTTTCCCAGCTTTGACGACACTTA
CTTTCCAACCACTAAATCCCGACCACGGGACTGAAAC	ACCTCTAGAGTCGAAAGACCACCCTTAATAAATTTCAA
CTTTCCAACCACTAAATCCCGACCACGGGACTGAAACCACAAATGCTCTTTTAACTAATCCTGCCTTGGCTGCTTTCCAACCACTAAATCCCGACCACGGGACTGAAAC	CTTTCTGCTGAAAAATTATGCTTCTGTCTATATTTTAGACATGG
CTTTCCAACCACTAAATCCCGACCACGGGACTGAAAC	CTTTCTGCTGAGGGCAAAATCACACAAGCAAATG
CTTTCCAACCACTAAATCCCGACCACGGGACTGAAAC	TGATGTTGTGATGCACATTGTTAAGAAAGATGCCCG
CTTTCCAACCACTAAATCCCGACCACGGGACTGAAAC	TGAGGAAATCGACGTTCTCCGGGCTGAAGTGGACT
CTTTCCAACCACTAAATCCCGACCACGGGACTGAAAC	TTTTCCTGGCTTTATTGTGGGGGCTGTCCTTGGTGATT
CTTTCCAACCACTAAATCCCGATCACGGGACTGAAAC	CAGTTTTTACCCCAGCTTCCGAGTGAGTGGGCATC
CTTTCCAACCACTAAATCCCGATCACGGGACTGAAAC	TAAACACTTGGGTGTTTACGTCTACCACCGAGCGAAGTCGA
CTTTCCAACCACTAAATCCCGATCACGGGACTGAAAC	CCAACTCATTGATTTTCCTTTCAGCCCTGGCATTAGC
CTTTCCAACCACTAAATCCCGATCACGGGACTGAAAC	TAAGATGGCGACGTTTTTTCGATACCGGGCCAAGGATG
CTTTCCAACCACTAAATCCCGATCACGGGACTGAAAC	CAAGCACTGCGTTTCCGTCGCATTGTGCGCTGGCTAA
CTTTCCAACCACTAAATCCCGATCACGGGACTGAAAC	AGAGGATGGCCTGGGCCTCTGGCAATCAGACTGGTTC
CTTTCCAACCACTAAATCCCGATCACGGGACTGAAAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP016482.1\|WP_065712009.1\|257288_258254_+\|type-I-D-CRISPR-associated-protein-Cas7/Csc2	csc2gr7	cd09709_csc2gr7_CAS-I-D	gnl\|CDD\|375747
NZ_CP016482.1\|WP_065712007.1\|251017_253201_+\|type-I-D-CRISPR-associated-helicase-Cas3'	cas3	cd09710_cas3_CAS-I-D	gnl\|CDD\|187841
NZ_CP016482.1\|WP_065712014.1\|261396_261690_+\|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187856
NZ_CP016482.1\|WP_065712010.1\|258268_258991_+\|type-I-D-CRISPR-associated-protein-Cas5/Csc1	csc1gr5	cd09711_csc1gr5_CAS-I-D	gnl\|CDD\|187842
NZ_CP016482.1\|WP_065712006.1\|250057_250921_-\|WYL-domain-containing-protein	WYL	pfam13280_WYL_CAS-I:CAS-III	gnl\|CDD\|225253
NZ_CP016482.1\|WP_083500766.1\|249888_250095_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP016482.1\|WP_065712013.1\|260422_261400_+\|type-I-D-CRISPR-associated-endonuclease-Cas1	cas1	cd09634_cas1_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|274976
NZ_CP016482.1\|WP_065712011.1\|258995_259832_+\|CRISPR-associated-endoribonuclease-Cas6	cas6	COG5551_cas6_CAS-III	gnl\|CDD\|227838
NZ_CP016482.1\|WP_065712012.1\|259841_260420_+\|CRISPR-associated-protein-Cas4	cas4	cd09637_cas4_CAS-I:CAS-II:CAS-V	gnl\|CDD\|273040
NZ_CP016482.1\|WP_065712008.1\|253893_257235_+\|type-I-D-CRISPR-associated-protein-Cas10d/Csc3	cas10d	cd09712_cas10d_CAS-I-D	gnl\|CDD\|274469

Protein	Function_ID	Function_description	E-value
NZ_CP016482.1\|WP_065712009.1\|257288_258254_+\|type-I-D-CRISPR-associated-protein-Cas7/Csc2	gnl\|CDD\|375747	pfam18320, Csc2, Csc2 Crispr. The Csc2 Crispr family of proteins forms a core RNA recognition motif-like domain, flanked by three peripheral insertion domains: a lid domain, a Zinc-binding domain and a helical domain. The CRISPR-Cas system is possibly a mechanism of defence against invading pathogens and plasmids that functions analogously to the RNA interference (RNAi) systems in eukaryotes.	5.80586e-164
NZ_CP016482.1\|WP_065712007.1\|251017_253201_+\|type-I-D-CRISPR-associated-helicase-Cas3'	gnl\|CDD\|187841	cd09710, Cas3_I-D, CRISPR/Cas system-associated protein Cas3; Distinct diverged subfamily of Cas3 helicase domain. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Diverged DNA helicase Cas3'; signature gene for Type I and subtype I-D.	1.10593e-108
NZ_CP016482.1\|WP_065712014.1\|261396_261690_+\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	8.1809e-25
NZ_CP016482.1\|WP_065712010.1\|258268_258991_+\|type-I-D-CRISPR-associated-protein-Cas5/Csc1	gnl\|CDD\|187842	cd09711, Csc1_I-D, CRISPR/Cas system-associated protein Csc1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; RAMP superfamily protein; predicted Cas5 ortholog; also known as CasA/Cse1 family.	5.90031e-62
NZ_CP016482.1\|WP_065712006.1\|250057_250921_-\|WYL-domain-containing-protein	gnl\|CDD\|225253	COG2378, COG2378, Predicted transcriptional regulator [Transcription].	3.89578e-08
NZ_CP016482.1\|WP_065712013.1\|260422_261400_+\|type-I-D-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274976	TIGR04093, hypothetical_protein_L8106_25395, CRISPR-associated endonuclease Cas1, subtype CYANO. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes a clade of Cas1 limited to the CYANO subtype of CRISPR/Cas system and most often the type found there.	0
NZ_CP016482.1\|WP_065712011.1\|258995_259832_+\|CRISPR-associated-endoribonuclease-Cas6	gnl\|CDD\|227838	COG5551, COG5551, CRISPR system related protein, RAMP superfamily [Defense mechanisms].	8.72832e-32
NZ_CP016482.1\|WP_065712012.1\|259841_260420_+\|CRISPR-associated-protein-Cas4	gnl\|CDD\|273040	TIGR00372, conserved_hypothetical_protein, CRISPR-associated protein Cas4. This model represents a family of proteins associated with CRISPR repeats in a wide set of prokaryotic genomes. This scope of this model has been broadened since it was first built to describe an archaeal subset only. The function of the protein is undefined. Distantly related proteins, excluded from this model, include ORFs from Mycobacteriophage D29 and Sulfolobus islandicus filamentous virus and a region of the Schizosaccharomyces pombe DNA replication helicase Dna2p.	4.41738e-35
NZ_CP016482.1\|WP_065712008.1\|253893_257235_+\|type-I-D-CRISPR-associated-protein-Cas10d/Csc3	gnl\|CDD\|274469	TIGR03174, cas_Csc3, CRISPR type I-D/CYANO-associated protein Csc3/Cas10d. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is a widespread family of prokaryotic direct repeats with spacers of unique sequence between consecutive repeats. This protein family is a CRISPR-associated (Cas) family strictly associated with the Cyano subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. This family is designated Csc3 for CRISPR/Cas Subtype Cyano protein 3, as it is often the third gene upstream of the core cas genes, cas3-cas4-cas1-cas2.	0

>NZ_CP016482.1|WP_065712014.1|261396_261690_+|CRISPR-associated-endonuclease-Cas2
MNTLFYLIIYDLPSTKAGNKRRKRLFDLLSGYGTWKQFSVFECFLTTKQFAKLQTSIEKLIKPDEDAVCIYILDATAVKKAIAYGTSTPEKPGSIIL
>NZ_CP016482.1|WP_065712013.1|260422_261400_+|type-I-D-CRISPR-associated-endonuclease-Cas1
MSTLYLTQPDAILSKQQEAFKIALKSEDGTWKKQSIPAQTLEDIVLLGYPSMTGEAFGYALELGLPVHYLSRFGKYVGSALPNESRNGQLRLAQFRAHENPNQRLDIVKAIAKGKIHNQYNLLYRRGQKENPLKGREKLVLQKQSLDEVRGVEGLAAREYFACWQDILGDQWEFTGRFRRPPTDPVNALLSFGYGLLRTQVTAAAHIAGLDPYIGFLHETTRGQPALVLDLMEEFRPLIADSVVLTVLKQKEIKPKDFNESLGAYRLKDDACKVFLSAFDRKLCSEFKHPIFNYKCSYRRAIELQARLLARHLQEGIPYEPLIIR
>NZ_CP016482.1|WP_065712012.1|259841_260420_+|CRISPR-associated-protein-Cas4
MDDYLPLAYLNAWEYCPRRFYFEYVLGEMEINDHIIRGNHLHRNIDQAGTSIEGDTRIHRQQWVWSDRLKIKGIIDAVEETDGLLIPLEYKKGKMGKHLNDHFQLCAAALCLEERTKQEIPYGEIFYYGNRRRQQVEFTQTLRNLTEQAIMAAHLASNRPMPLPITNQKKCTDCSLKRLCLPKEIKKLVKFH
>NZ_CP016482.1|WP_065712011.1|258995_259832_+|CRISPR-associated-endoribonuclease-Cas6
MPYSLVINFVPRSPLLKTHLNGRNFHALFLDLVSSVDKDLGTQLHQQQSEKAFTLSPVQIRLNRKLMQWSYHRAIAPGTPCWWRITLLDDSLFGKLAHLWLNINRTEPWQLGSAELDIISILSNPQSQQPWANFISYTRLYEQALDGTDSQTSQQARKINFRFCTPTTFRKTQYDVSLPDRDLIFRSLLKRWNQYSEIPLEFTETIFEPIYPSFFDIRTEMVSDKRSKFIGCVGEMSFSILGDVNAQIIKQINTLADFSFYAGIGRKTPMGMGQVSRY
>NZ_CP016482.1|WP_065712010.1|258268_258991_+|type-I-D-CRISPR-associated-protein-Cas5/Csc1
MTIIYNCTLELHDSLYFATREIGRLYETEAVLHNYALAYILGFVDNPKYQTEVSTENSYRYFCAEQIPKYKQHLEPLNKQNIYITPAKPKHHTSVLNTWKYADNHYHVEMKPTSKNIPSFGRTKEIAPESEFEFFVISKEKLNFPHWVRMGKWSSKAKLETKSLEIDKHYSNQEFTFPYVLNPLDVMKSNQILSFDTINMPPVSLIQNIHMIGDYFTFKNLPKQMQGLKLPSNMSYQFSA
>NZ_CP016482.1|WP_065712009.1|257288_258254_+|type-I-D-CRISPR-associated-protein-Cas7/Csc2
MSLLKSIDSKFFHTEIPSKPMGKYAHFLTIRVTESYPLFQTDGELNKARVTAGVEDQSLMSRLAMFKRKQSTPERLVGRELLRNYGIITEACEYNEKFEMDHPDSIVYGFAIGDSGSEKSKVVVDTAFSITPFDESHETFTLNAPYESGTMSKQGVVTSRINQQDHIRPQVFFPSIVTLKDPTEGTFLYVMNNILRTRHYGAQTTRTGRLRNELIGVVFADGEIVSNLRWTQTIYDLMKDKIAPPDPLQEADVLDAAKEAIAQLMTEEVIVHTDLIGEAFEALLGEVKSLTSTEEGIQSLLQTADRDAKAYYGKYVKKQGK
>NZ_CP016482.1|WP_065712008.1|253893_257235_+|type-I-D-CRISPR-associated-protein-Cas10d/Csc3
MNDNFDLENINPDEFLADESGDRLIETQERELLTLKLLRKAIQDSNQDDPVMKDFSEIVLPNLLKVAIGVTAKGGKFFDEIDAQRAAEGKEKVRRDNAADQSLNTHLLNGLFPANQIEKRLEKLDTTIARGIEEFERRLTIAGFMLHDFEKFSDVPQDCRKLDIQQQQEIIVQKLLELELNKFIDPDNPETYQDYIDDLTVLICNAQRRWDTNWNFSEYGLQPKVHPKLLRQLADLTCLADSFASIIKHPQDAAKTKFKELLHSLSDGQLSLTYHHLAENRGVLTNVVNNAVIDLHISLNTEDEIFYEPLLYLPTGVIYLKTRNAPNIPTDGLGDRVVKKIKSLCFKQLKARQTGFSRDGKGMKYADYYNLFCDERGLMEIALDATKKILTANKKSVAPARTEKLQNFQESGVLSAHYDFQLQEDIRMDQLAEFGDTICRKIWGNKYKELENLYKQRVRDRKKKKSLAELPEPQLPPEEVILKVAEFWGLADYIPQLRQIQNINQSLKENKLKGNTGGVPYEWYYLSTKYLEANPGLEDIRETAEQLITFVADLIEPIIAQYSVDDGWQDIREWVKRVVMLPQQEIASNAEQIEIFLKELNAYQAAKKSGRGKEIICSISNSPYSVTEQMESAVLFTPQVYTNKQHLGGSNAKRNISSIAGIEMMLRQILMNQTQAVGKRFEDGKYRYLYFYPTYYFTPETNKFLQQAYQAIAQTRFDTELRNHFISKEGDINLTKANYQSVDFLLMDEDLKAKQQLPDKDPNYRKDRTFKLSYPDDQPLTFYFIALPPGRDPTDTESWVMPTWLAFVMPMILDVKTVVSESPIPPFTDGTEFEETVFLDSAPQAFRVLTGVDRFRLDYILEGWRDGSGRIYPSPLKALTAAYAIHLDVNPKRGKGGYDANWGKLTELAKDFQSSPLNVFSYLSKWRRGKEAESPPISKIKLYADHFYPCFDPYYNSETQKEKSPLNHPKKLTELYREFYRANKSYNPKANAVLKPIDVAAQAILNADNCLMDSDTLIAVAAAEVSKLMDRVHSSTAEGRWVISDRKKERQRILEFAQYFVQDVFEGGFKGDRARLAGKQLNLIRDTCEFLYRLEQDQENQDYKARKAAQEEE
>NZ_CP016482.1|WP_065712007.1|251017_253201_+|type-I-D-CRISPR-associated-helicase-Cas3'
MSNYSITLKPVFSAPADSLPQGLALPDGWSSLAWHQKETLDALNNPEIDVVFNVAMTGDGKSLAAYLKSLTKKLFSVIALYPTNELARDQESQIENYIELFQSKPKPRCHRLSGELLELYAENEEIRKSEAISSQLGQSEIVMSNPDIFHYIHRGAYLTPYENRDKLWGKIGLDFDVLIFDEFHVFSAPQISSVLNTMLLIRTTQSLNKKFLFLSATPDHEFIERLKIAGFRCHVIDPKEENKYQFPVTEADQAELLAQNWRKVVSEINLQFIALESNSRASESWLKENAEQVLAQFSESGSKGAIILNSVASVKRLVQFFKDYLEPHGLTAGENTGLSSKDTKEKSLASDLVIGTSTIDVGVDFKINFLFFESADAGNFIQRLGRLGRHEGYKKNNEYIQFKSFRAYALVPNFFTERLFDKNDAPLTQNEFYERPSFHDVINTEYRSINQFYYYYQKWGGFQSFKLLLDLKQKPIQKTYEESVKVFAELSQRALNFKLGYVAHQWKKFGQEWHELSGKQGNPVTEEACSFRGKSDLQCGLYDLTENHEASSFKTYGLPGILSNLEIEPITEKEFRRSLDQAIKQSGQPIAKGRFNYCLAFMKLVRYRDERLDWKFTYNGDLLDLINRWEVQVLYGFEIWQPDNRWISAINKRLSKQGMVVYLLPRPVLEVRARLQLPMHFQIYPICDRHSWHDPKAPYSIAFGQSALLIDTLAYYFKQDGGKAWIF
>NZ_CP016482.1|WP_065712006.1|250057_250921_-|WYL-domain-containing-protein
MGRKGQSITLSLLEREKAALEKLALEYGCVWGDRPNISKLIKQIAKRELKIAPNNDWQLERINVLERIRTFLIDQGQIDEAIAVAQILSERGELKDIALKREIEKFLQQPLPTWRQRIDSFIRRQKPFQLSYQDAQGRIWSFSIHHAQIVTHEKRQYLDCWATETEGNLDLPELQHNWSLRLDRIQDAAVSPLNEKWRSHLDSISVELHLYRGLAFAYQGKSADVHNDWHPELPKTRQVIRQVTSTFWFFREILPYGKDCKIIAPQSISDLFKQDLEALYQMYNPKH
>NZ_CP016482.1|WP_083500766.1|249888_250095_-|hypothetical-protein
MRHSIKCITQNIDILSDKVAQTREFYPEHFVGELMFQNDNTDECEVYPFLTEAIARLEQKVAYYRDEA

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_CP016482_3	3.16\|263052\|38\|NZ_CP016482\|PILER-CR,CRISPRCasFinder,CRT	263052-263089	38	NZ_CP016482.1	264745-264782	0	1.0

1. spacer 3.16|263052|38|NZ_CP016482|PILER-CR,CRISPRCasFinder,CRT matches to position: 264745-264782, mismatch: 0, identity: 1.0

gccttctacaatgacaattgtccgtgaagcttgccctg	CRISPR spacer
gccttctacaatgacaattgtccgtgaagcttgccctg	Protospacer
**************************************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP016482_1	1.1\|91\|36\|NZ_CP016482\|PILER-CR,CRISPRCasFinder,CRT	91-126	36	NZ_CP016482	Synechococcus sp. PCC 7117 plasmid unnamed5, complete sequence	91-126	0	1.0
NZ_CP016482_1	1.2\|164\|33\|NZ_CP016482\|PILER-CR,CRISPRCasFinder,CRT	164-196	33	NZ_CP016482	Synechococcus sp. PCC 7117 plasmid unnamed5, complete sequence	164-196	0	1.0
NZ_CP016482_1	1.3\|234\|36\|NZ_CP016482\|PILER-CR,CRISPRCasFinder,CRT	234-269	36	NZ_CP016482	Synechococcus sp. PCC 7117 plasmid unnamed5, complete sequence	234-269	0	1.0
NZ_CP016482_1	1.4\|307\|37\|NZ_CP016482\|PILER-CR,CRISPRCasFinder,CRT	307-343	37	NZ_CP016482	Synechococcus sp. PCC 7117 plasmid unnamed5, complete sequence	307-343	0	1.0
NZ_CP016482_2	2.1\|236425\|36\|NZ_CP016482\|PILER-CR,CRISPRCasFinder,CRT	236425-236460	36	NZ_CP016482	Synechococcus sp. PCC 7117 plasmid unnamed5, complete sequence	236425-236460	0	1.0
NZ_CP016482_2	2.2\|236497\|39\|NZ_CP016482\|PILER-CR,CRISPRCasFinder,CRT	236497-236535	39	NZ_CP016482	Synechococcus sp. PCC 7117 plasmid unnamed5, complete sequence	236497-236535	0	1.0
NZ_CP016482_2	2.3\|236572\|40\|NZ_CP016482\|PILER-CR,CRISPRCasFinder,CRT	236572-236611	40	NZ_CP016482	Synechococcus sp. PCC 7117 plasmid unnamed5, complete sequence	236572-236611	0	1.0
NZ_CP016482_2	2.4\|236648\|43\|NZ_CP016482\|PILER-CR,CRISPRCasFinder,CRT	236648-236690	43	NZ_CP016482	Synechococcus sp. PCC 7117 plasmid unnamed5, complete sequence	236648-236690	0	1.0
NZ_CP016482_2	2.5\|236727\|40\|NZ_CP016482\|PILER-CR,CRISPRCasFinder,CRT	236727-236766	40	NZ_CP016482	Synechococcus sp. PCC 7117 plasmid unnamed5, complete sequence	236727-236766	0	1.0
NZ_CP016482_2	2.6\|236803\|40\|NZ_CP016482\|PILER-CR,CRISPRCasFinder,CRT	236803-236842	40	NZ_CP016482	Synechococcus sp. PCC 7117 plasmid unnamed5, complete sequence	236803-236842	0	1.0
NZ_CP016482_2	2.7\|236879\|39\|NZ_CP016482\|PILER-CR,CRISPRCasFinder,CRT	236879-236917	39	NZ_CP016482	Synechococcus sp. PCC 7117 plasmid unnamed5, complete sequence	236879-236917	0	1.0
NZ_CP016482_2	2.8\|236954\|39\|NZ_CP016482\|PILER-CR,CRISPRCasFinder,CRT	236954-236992	39	NZ_CP016482	Synechococcus sp. PCC 7117 plasmid unnamed5, complete sequence	236954-236992	0	1.0
NZ_CP016482_2	2.9\|237029\|38\|NZ_CP016482\|PILER-CR,CRISPRCasFinder,CRT	237029-237066	38	NZ_CP016482	Synechococcus sp. PCC 7117 plasmid unnamed5, complete sequence	237029-237066	0	1.0
NZ_CP016482_2	2.10\|237103\|40\|NZ_CP016482\|CRISPRCasFinder,CRT	237103-237142	40	NZ_CP016482	Synechococcus sp. PCC 7117 plasmid unnamed5, complete sequence	237103-237142	0	1.0
NZ_CP016482_3	3.1\|261939\|34\|NZ_CP016482\|PILER-CR,CRISPRCasFinder,CRT	261939-261972	34	NZ_CP016482	Synechococcus sp. PCC 7117 plasmid unnamed5, complete sequence	261939-261972	0	1.0
NZ_CP016482_3	3.2\|262010\|36\|NZ_CP016482\|PILER-CR,CRISPRCasFinder,CRT	262010-262045	36	NZ_CP016482	Synechococcus sp. PCC 7117 plasmid unnamed5, complete sequence	262010-262045	0	1.0
NZ_CP016482_3	3.3\|262083\|36\|NZ_CP016482\|PILER-CR,CRISPRCasFinder,CRT	262083-262118	36	NZ_CP016482	Synechococcus sp. PCC 7117 plasmid unnamed5, complete sequence	262083-262118	0	1.0
NZ_CP016482_3	3.4\|262156\|34\|NZ_CP016482\|PILER-CR,CRISPRCasFinder,CRT	262156-262189	34	NZ_CP016482	Synechococcus sp. PCC 7117 plasmid unnamed5, complete sequence	262156-262189	0	1.0
NZ_CP016482_3	3.5\|262227\|47\|NZ_CP016482\|PILER-CR,CRISPRCasFinder,CRT	262227-262273	47	NZ_CP016482	Synechococcus sp. PCC 7117 plasmid unnamed5, complete sequence	262227-262273	0	1.0
NZ_CP016482_3	3.6\|262311\|35\|NZ_CP016482\|PILER-CR,CRISPRCasFinder,CRT	262311-262345	35	NZ_CP016482	Synechococcus sp. PCC 7117 plasmid unnamed5, complete sequence	262311-262345	0	1.0
NZ_CP016482_3	3.7\|262383\|37\|NZ_CP016482\|PILER-CR,CRISPRCasFinder,CRT	262383-262419	37	NZ_CP016482	Synechococcus sp. PCC 7117 plasmid unnamed5, complete sequence	262383-262419	0	1.0
NZ_CP016482_3	3.8\|262457\|36\|NZ_CP016482\|PILER-CR,CRISPRCasFinder,CRT	262457-262492	36	NZ_CP016482	Synechococcus sp. PCC 7117 plasmid unnamed5, complete sequence	262457-262492	0	1.0
NZ_CP016482_3	3.9\|262530\|35\|NZ_CP016482\|PILER-CR,CRISPRCasFinder,CRT	262530-262564	35	NZ_CP016482	Synechococcus sp. PCC 7117 plasmid unnamed5, complete sequence	262530-262564	0	1.0
NZ_CP016482_3	3.9\|262530\|35\|NZ_CP016482\|PILER-CR,CRISPRCasFinder,CRT	262530-262564	35	NZ_CP016482	Synechococcus sp. PCC 7117 plasmid unnamed5, complete sequence	264223-264257	0	1.0
NZ_CP016482_3	3.10\|262602\|41\|NZ_CP016482\|PILER-CR,CRISPRCasFinder,CRT	262602-262642	41	NZ_CP016482	Synechococcus sp. PCC 7117 plasmid unnamed5, complete sequence	262602-262642	0	1.0
NZ_CP016482_3	3.10\|262602\|41\|NZ_CP016482\|PILER-CR,CRISPRCasFinder,CRT	262602-262642	41	NZ_CP016482	Synechococcus sp. PCC 7117 plasmid unnamed5, complete sequence	264295-264335	0	1.0
NZ_CP016482_3	3.11\|262680\|37\|NZ_CP016482\|PILER-CR,CRISPRCasFinder,CRT	262680-262716	37	NZ_CP016482	Synechococcus sp. PCC 7117 plasmid unnamed5, complete sequence	262680-262716	0	1.0
NZ_CP016482_3	3.11\|262680\|37\|NZ_CP016482\|PILER-CR,CRISPRCasFinder,CRT	262680-262716	37	NZ_CP016482	Synechococcus sp. PCC 7117 plasmid unnamed5, complete sequence	264373-264409	0	1.0
NZ_CP016482_3	3.12\|262754\|38\|NZ_CP016482\|PILER-CR,CRISPRCasFinder,CRT	262754-262791	38	NZ_CP016482	Synechococcus sp. PCC 7117 plasmid unnamed5, complete sequence	262754-262791	0	1.0
NZ_CP016482_3	3.12\|262754\|38\|NZ_CP016482\|PILER-CR,CRISPRCasFinder,CRT	262754-262791	38	NZ_CP016482	Synechococcus sp. PCC 7117 plasmid unnamed5, complete sequence	264447-264484	0	1.0
NZ_CP016482_3	3.13\|262829\|37\|NZ_CP016482\|PILER-CR,CRISPRCasFinder,CRT	262829-262865	37	NZ_CP016482	Synechococcus sp. PCC 7117 plasmid unnamed5, complete sequence	262829-262865	0	1.0
NZ_CP016482_3	3.13\|262829\|37\|NZ_CP016482\|PILER-CR,CRISPRCasFinder,CRT	262829-262865	37	NZ_CP016482	Synechococcus sp. PCC 7117 plasmid unnamed5, complete sequence	264522-264558	0	1.0
NZ_CP016482_3	3.14\|262903\|37\|NZ_CP016482\|PILER-CR,CRISPRCasFinder,CRT	262903-262939	37	NZ_CP016482	Synechococcus sp. PCC 7117 plasmid unnamed5, complete sequence	262903-262939	0	1.0
NZ_CP016482_3	3.14\|262903\|37\|NZ_CP016482\|PILER-CR,CRISPRCasFinder,CRT	262903-262939	37	NZ_CP016482	Synechococcus sp. PCC 7117 plasmid unnamed5, complete sequence	264596-264632	0	1.0
NZ_CP016482_3	3.15\|262977\|38\|NZ_CP016482\|PILER-CR,CRISPRCasFinder,CRT	262977-263014	38	NZ_CP016482	Synechococcus sp. PCC 7117 plasmid unnamed5, complete sequence	262977-263014	0	1.0
NZ_CP016482_3	3.15\|262977\|38\|NZ_CP016482\|PILER-CR,CRISPRCasFinder,CRT	262977-263014	38	NZ_CP016482	Synechococcus sp. PCC 7117 plasmid unnamed5, complete sequence	264670-264707	0	1.0
NZ_CP016482_3	3.16\|263052\|38\|NZ_CP016482\|PILER-CR,CRISPRCasFinder,CRT	263052-263089	38	NZ_CP016482	Synechococcus sp. PCC 7117 plasmid unnamed5, complete sequence	263052-263089	0	1.0
NZ_CP016482_3	3.16\|263052\|38\|NZ_CP016482\|PILER-CR,CRISPRCasFinder,CRT	263052-263089	38	NZ_CP016482	Synechococcus sp. PCC 7117 plasmid unnamed5, complete sequence	264745-264782	0	1.0
NZ_CP016482_3	3.17\|263127\|34\|NZ_CP016482\|PILER-CR,CRISPRCasFinder,CRT	263127-263160	34	NZ_CP016482	Synechococcus sp. PCC 7117 plasmid unnamed5, complete sequence	263127-263160	0	1.0
NZ_CP016482_3	3.18\|263198\|36\|NZ_CP016482\|PILER-CR,CRISPRCasFinder,CRT	263198-263233	36	NZ_CP016482	Synechococcus sp. PCC 7117 plasmid unnamed5, complete sequence	263198-263233	0	1.0
NZ_CP016482_3	3.19\|263271\|38\|NZ_CP016482\|CRISPRCasFinder,CRT	263271-263308	38	NZ_CP016482	Synechococcus sp. PCC 7117 plasmid unnamed5, complete sequence	263271-263308	0	1.0
NZ_CP016482_3	3.20\|263346\|33\|NZ_CP016482\|CRISPRCasFinder,CRT	263346-263378	33	NZ_CP016482	Synechococcus sp. PCC 7117 plasmid unnamed5, complete sequence	263346-263378	0	1.0
NZ_CP016482_3	3.21\|263416\|35\|NZ_CP016482\|CRISPRCasFinder,CRT,PILER-CR	263416-263450	35	NZ_CP016482	Synechococcus sp. PCC 7117 plasmid unnamed5, complete sequence	263416-263450	0	1.0
NZ_CP016482_3	3.22\|263488\|35\|NZ_CP016482\|CRISPRCasFinder,CRT,PILER-CR	263488-263522	35	NZ_CP016482	Synechococcus sp. PCC 7117 plasmid unnamed5, complete sequence	263488-263522	0	1.0
NZ_CP016482_3	3.23\|263560\|35\|NZ_CP016482\|CRISPRCasFinder,CRT,PILER-CR	263560-263594	35	NZ_CP016482	Synechococcus sp. PCC 7117 plasmid unnamed5, complete sequence	263560-263594	0	1.0
NZ_CP016482_3	3.24\|263632\|35\|NZ_CP016482\|CRISPRCasFinder,CRT,PILER-CR	263632-263666	35	NZ_CP016482	Synechococcus sp. PCC 7117 plasmid unnamed5, complete sequence	263632-263666	0	1.0
NZ_CP016482_3	3.25\|263704\|38\|NZ_CP016482\|CRISPRCasFinder,CRT,PILER-CR	263704-263741	38	NZ_CP016482	Synechococcus sp. PCC 7117 plasmid unnamed5, complete sequence	263704-263741	0	1.0
NZ_CP016482_3	3.26\|263779\|35\|NZ_CP016482\|CRISPRCasFinder,CRT	263779-263813	35	NZ_CP016482	Synechococcus sp. PCC 7117 plasmid unnamed5, complete sequence	263779-263813	0	1.0
NZ_CP016482_3	3.27\|263851\|44\|NZ_CP016482\|CRISPRCasFinder,CRT,PILER-CR	263851-263894	44	NZ_CP016482	Synechococcus sp. PCC 7117 plasmid unnamed5, complete sequence	263851-263894	0	1.0
NZ_CP016482_3	3.28\|263932\|34\|NZ_CP016482\|CRISPRCasFinder,CRT,PILER-CR	263932-263965	34	NZ_CP016482	Synechococcus sp. PCC 7117 plasmid unnamed5, complete sequence	263932-263965	0	1.0
NZ_CP016482_3	3.29\|264003\|36\|NZ_CP016482\|CRISPRCasFinder,CRT,PILER-CR	264003-264038	36	NZ_CP016482	Synechococcus sp. PCC 7117 plasmid unnamed5, complete sequence	264003-264038	0	1.0
NZ_CP016482_3	3.30\|264076\|35\|NZ_CP016482\|CRISPRCasFinder,CRT,PILER-CR	264076-264110	35	NZ_CP016482	Synechococcus sp. PCC 7117 plasmid unnamed5, complete sequence	264076-264110	0	1.0
NZ_CP016482_3	3.31\|264148\|38\|NZ_CP016482\|CRISPRCasFinder,CRT,PILER-CR	264148-264185	38	NZ_CP016482	Synechococcus sp. PCC 7117 plasmid unnamed5, complete sequence	264148-264185	0	1.0
NZ_CP016482_3	3.32\|264223\|35\|NZ_CP016482\|CRISPRCasFinder,CRT,PILER-CR	264223-264257	35	NZ_CP016482	Synechococcus sp. PCC 7117 plasmid unnamed5, complete sequence	262530-262564	0	1.0
NZ_CP016482_3	3.32\|264223\|35\|NZ_CP016482\|CRISPRCasFinder,CRT,PILER-CR	264223-264257	35	NZ_CP016482	Synechococcus sp. PCC 7117 plasmid unnamed5, complete sequence	264223-264257	0	1.0
NZ_CP016482_3	3.33\|264295\|41\|NZ_CP016482\|CRISPRCasFinder,CRT,PILER-CR	264295-264335	41	NZ_CP016482	Synechococcus sp. PCC 7117 plasmid unnamed5, complete sequence	262602-262642	0	1.0
NZ_CP016482_3	3.33\|264295\|41\|NZ_CP016482\|CRISPRCasFinder,CRT,PILER-CR	264295-264335	41	NZ_CP016482	Synechococcus sp. PCC 7117 plasmid unnamed5, complete sequence	264295-264335	0	1.0
NZ_CP016482_3	3.34\|264373\|37\|NZ_CP016482\|CRISPRCasFinder,CRT,PILER-CR	264373-264409	37	NZ_CP016482	Synechococcus sp. PCC 7117 plasmid unnamed5, complete sequence	262680-262716	0	1.0
NZ_CP016482_3	3.34\|264373\|37\|NZ_CP016482\|CRISPRCasFinder,CRT,PILER-CR	264373-264409	37	NZ_CP016482	Synechococcus sp. PCC 7117 plasmid unnamed5, complete sequence	264373-264409	0	1.0
NZ_CP016482_3	3.35\|264447\|38\|NZ_CP016482\|CRISPRCasFinder,CRT,PILER-CR	264447-264484	38	NZ_CP016482	Synechococcus sp. PCC 7117 plasmid unnamed5, complete sequence	262754-262791	0	1.0
NZ_CP016482_3	3.35\|264447\|38\|NZ_CP016482\|CRISPRCasFinder,CRT,PILER-CR	264447-264484	38	NZ_CP016482	Synechococcus sp. PCC 7117 plasmid unnamed5, complete sequence	264447-264484	0	1.0
NZ_CP016482_3	3.36\|264522\|37\|NZ_CP016482\|CRISPRCasFinder,CRT,PILER-CR	264522-264558	37	NZ_CP016482	Synechococcus sp. PCC 7117 plasmid unnamed5, complete sequence	262829-262865	0	1.0
NZ_CP016482_3	3.36\|264522\|37\|NZ_CP016482\|CRISPRCasFinder,CRT,PILER-CR	264522-264558	37	NZ_CP016482	Synechococcus sp. PCC 7117 plasmid unnamed5, complete sequence	264522-264558	0	1.0
NZ_CP016482_3	3.37\|264596\|37\|NZ_CP016482\|CRISPRCasFinder,CRT,PILER-CR	264596-264632	37	NZ_CP016482	Synechococcus sp. PCC 7117 plasmid unnamed5, complete sequence	262903-262939	0	1.0
NZ_CP016482_3	3.37\|264596\|37\|NZ_CP016482\|CRISPRCasFinder,CRT,PILER-CR	264596-264632	37	NZ_CP016482	Synechococcus sp. PCC 7117 plasmid unnamed5, complete sequence	264596-264632	0	1.0
NZ_CP016482_3	3.38\|264670\|38\|NZ_CP016482\|CRISPRCasFinder,CRT	264670-264707	38	NZ_CP016482	Synechococcus sp. PCC 7117 plasmid unnamed5, complete sequence	262977-263014	0	1.0
NZ_CP016482_3	3.38\|264670\|38\|NZ_CP016482\|CRISPRCasFinder,CRT	264670-264707	38	NZ_CP016482	Synechococcus sp. PCC 7117 plasmid unnamed5, complete sequence	264670-264707	0	1.0
NZ_CP016482_1	1.3\|234\|36\|NZ_CP016482\|PILER-CR,CRISPRCasFinder,CRT	234-269	36	NZ_CP016485	Synechococcus sp. PCC 8807 plasmid unnamed2, complete sequence	10413-10448	1	0.972
NZ_CP016482_3	3.1\|261939\|34\|NZ_CP016482\|PILER-CR,CRISPRCasFinder,CRT	261939-261972	34	NC_021289	Burkholderia insecticola plasmid p1, complete sequence	983862-983895	8	0.765
NZ_CP016482_3	3.4\|262156\|34\|NZ_CP016482\|PILER-CR,CRISPRCasFinder,CRT	262156-262189	34	MH648987	Siphoviridae sp. isolate ctcj11, complete genome	15022-15055	8	0.765
NZ_CP016482_3	3.17\|263127\|34\|NZ_CP016482\|PILER-CR,CRISPRCasFinder,CRT	263127-263160	34	NC_011412	Clostridium perfringens plasmid pCP8533etx, complete sequence	7081-7114	8	0.765
NZ_CP016482_3	3.17\|263127\|34\|NZ_CP016482\|PILER-CR,CRISPRCasFinder,CRT	263127-263160	34	NC_019687	Clostridium perfringens plasmid pCpb2-CP1, complete sequence	19350-19383	8	0.765
NZ_CP016482_3	3.17\|263127\|34\|NZ_CP016482\|PILER-CR,CRISPRCasFinder,CRT	263127-263160	34	NC_007772	Clostridium perfringens CPE str. F4969 plasmid pCPF4969, complete sequence	16911-16944	8	0.765
NZ_CP016482_3	3.17\|263127\|34\|NZ_CP016482\|PILER-CR,CRISPRCasFinder,CRT	263127-263160	34	NZ_CP013041	Clostridium perfringens strain JP55 plasmid pJFP55F, complete sequence	23119-23152	8	0.765
NZ_CP016482_3	3.17\|263127\|34\|NZ_CP016482\|PILER-CR,CRISPRCasFinder,CRT	263127-263160	34	NZ_CP013039	Clostridium perfringens strain JP838 plasmid pJFP838D, complete sequence	45645-45678	8	0.765
NZ_CP016482_3	3.17\|263127\|34\|NZ_CP016482\|PILER-CR,CRISPRCasFinder,CRT	263127-263160	34	NC_015712	Clostridium perfringens plasmid pCPPB-1, complete sequence	40698-40731	8	0.765
NZ_CP016482_3	3.17\|263127\|34\|NZ_CP016482\|PILER-CR,CRISPRCasFinder,CRT	263127-263160	34	MN693539	Marine virus AFVG_25M73, complete genome	46473-46506	9	0.735
NZ_CP016482_3	3.1\|261939\|34\|NZ_CP016482\|PILER-CR,CRISPRCasFinder,CRT	261939-261972	34	NC_008607	Pelobacter propionicus DSM 2379 plasmid pPRO1, complete sequence	52115-52148	10	0.706
NZ_CP016482_3	3.17\|263127\|34\|NZ_CP016482\|PILER-CR,CRISPRCasFinder,CRT	263127-263160	34	NZ_CP026221	Aeromonas sp. ASNIH4 plasmid pAER-f909, complete sequence	59910-59943	10	0.706
NZ_CP016482_3	3.20\|263346\|33\|NZ_CP016482\|CRISPRCasFinder,CRT	263346-263378	33	JN882284	Cronobacter phage vB_CsaM_GAP31, complete genome	58076-58108	10	0.697
NZ_CP016482_3	3.1\|261939\|34\|NZ_CP016482\|PILER-CR,CRISPRCasFinder,CRT	261939-261972	34	NC_011887	Methylobacterium nodulans ORS 2060 plasmid pMNOD02, complete sequence	347837-347870	11	0.676
NZ_CP016482_3	3.28\|263932\|34\|NZ_CP016482\|CRISPRCasFinder,CRT,PILER-CR	263932-263965	34	KR905066	Lactobacillus phage CL1, complete genome	28052-28085	11	0.676
NZ_CP016482_3	3.28\|263932\|34\|NZ_CP016482\|CRISPRCasFinder,CRT,PILER-CR	263932-263965	34	MK448702	Streptococcus phage Javan199, complete genome	21735-21768	11	0.676
NZ_CP016482_3	3.28\|263932\|34\|NZ_CP016482\|CRISPRCasFinder,CRT,PILER-CR	263932-263965	34	NC_028835	Lactobacillus phage CL2, complete genome	23982-24015	11	0.676

1. spacer 1.1|91|36|NZ_CP016482|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP016482 (Synechococcus sp. PCC 7117 plasmid unnamed5, complete sequence) position: , mismatch: 0, identity: 1.0

tgttcattgaagcgcggatttatcttcacccttctg	CRISPR spacer
tgttcattgaagcgcggatttatcttcacccttctg	Protospacer
************************************

2. spacer 1.2|164|33|NZ_CP016482|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP016482 (Synechococcus sp. PCC 7117 plasmid unnamed5, complete sequence) position: , mismatch: 0, identity: 1.0

aagtacaggggaaagggatcgaatatctcgaag	CRISPR spacer
aagtacaggggaaagggatcgaatatctcgaag	Protospacer
*********************************

3. spacer 1.3|234|36|NZ_CP016482|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP016482 (Synechococcus sp. PCC 7117 plasmid unnamed5, complete sequence) position: , mismatch: 0, identity: 1.0

cctagagctagaacgggctaaatttggctgcaatga	CRISPR spacer
cctagagctagaacgggctaaatttggctgcaatga	Protospacer
************************************

4. spacer 1.4|307|37|NZ_CP016482|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP016482 (Synechococcus sp. PCC 7117 plasmid unnamed5, complete sequence) position: , mismatch: 0, identity: 1.0

ctcgatgatcgtttcatcttcgtcccctaccgcaaag	CRISPR spacer
ctcgatgatcgtttcatcttcgtcccctaccgcaaag	Protospacer
*************************************

5. spacer 2.1|236425|36|NZ_CP016482|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP016482 (Synechococcus sp. PCC 7117 plasmid unnamed5, complete sequence) position: , mismatch: 0, identity: 1.0

gcttagaatttgaccagttggtcaataagccattgc	CRISPR spacer
gcttagaatttgaccagttggtcaataagccattgc	Protospacer
************************************

6. spacer 2.2|236497|39|NZ_CP016482|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP016482 (Synechococcus sp. PCC 7117 plasmid unnamed5, complete sequence) position: , mismatch: 0, identity: 1.0

aatacagaacccttttctgttcctttacatcgtcatgat	CRISPR spacer
aatacagaacccttttctgttcctttacatcgtcatgat	Protospacer
***************************************

7. spacer 2.3|236572|40|NZ_CP016482|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP016482 (Synechococcus sp. PCC 7117 plasmid unnamed5, complete sequence) position: , mismatch: 0, identity: 1.0

ttagtacacattgaatatggaggtatcaacatgtacttac	CRISPR spacer
ttagtacacattgaatatggaggtatcaacatgtacttac	Protospacer
****************************************

8. spacer 2.4|236648|43|NZ_CP016482|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP016482 (Synechococcus sp. PCC 7117 plasmid unnamed5, complete sequence) position: , mismatch: 0, identity: 1.0

ccattgttacagtgcaacaagttgattacatctgtggcaacag	CRISPR spacer
ccattgttacagtgcaacaagttgattacatctgtggcaacag	Protospacer
*******************************************

9. spacer 2.5|236727|40|NZ_CP016482|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP016482 (Synechococcus sp. PCC 7117 plasmid unnamed5, complete sequence) position: , mismatch: 0, identity: 1.0

tcagtaacagctgtgtctagtagatagtgtctgtaggtat	CRISPR spacer
tcagtaacagctgtgtctagtagatagtgtctgtaggtat	Protospacer
****************************************

10. spacer 2.6|236803|40|NZ_CP016482|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP016482 (Synechococcus sp. PCC 7117 plasmid unnamed5, complete sequence) position: , mismatch: 0, identity: 1.0

ttagattttctagaagaaaattatcaatttaatttaataa	CRISPR spacer
ttagattttctagaagaaaattatcaatttaatttaataa	Protospacer
****************************************

11. spacer 2.7|236879|39|NZ_CP016482|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP016482 (Synechococcus sp. PCC 7117 plasmid unnamed5, complete sequence) position: , mismatch: 0, identity: 1.0

ttttcaagtattatggatggacgaaagatttagatatga	CRISPR spacer
ttttcaagtattatggatggacgaaagatttagatatga	Protospacer
***************************************

12. spacer 2.8|236954|39|NZ_CP016482|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP016482 (Synechococcus sp. PCC 7117 plasmid unnamed5, complete sequence) position: , mismatch: 0, identity: 1.0

cggtcgagctcgtcccagtccaccggggtcgagaccggt	CRISPR spacer
cggtcgagctcgtcccagtccaccggggtcgagaccggt	Protospacer
***************************************

13. spacer 2.9|237029|38|NZ_CP016482|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP016482 (Synechococcus sp. PCC 7117 plasmid unnamed5, complete sequence) position: , mismatch: 0, identity: 1.0

agtttgtagataggttcaatctctacatcttcaaagaa	CRISPR spacer
agtttgtagataggttcaatctctacatcttcaaagaa	Protospacer
**************************************

14. spacer 2.10|237103|40|NZ_CP016482|CRISPRCasFinder,CRT matches to NZ_CP016482 (Synechococcus sp. PCC 7117 plasmid unnamed5, complete sequence) position: , mismatch: 0, identity: 1.0

ctcctgcaggtctttaacttgttgttggagttggacaaga	CRISPR spacer
ctcctgcaggtctttaacttgttgttggagttggacaaga	Protospacer
****************************************

15. spacer 3.1|261939|34|NZ_CP016482|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP016482 (Synechococcus sp. PCC 7117 plasmid unnamed5, complete sequence) position: , mismatch: 0, identity: 1.0

actcgccgaagcctgcacgggcatcaaaaagagg	CRISPR spacer
actcgccgaagcctgcacgggcatcaaaaagagg	Protospacer
**********************************

16. spacer 3.2|262010|36|NZ_CP016482|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP016482 (Synechococcus sp. PCC 7117 plasmid unnamed5, complete sequence) position: , mismatch: 0, identity: 1.0

tctctccaatcacagaggtttgggattatttcccga	CRISPR spacer
tctctccaatcacagaggtttgggattatttcccga	Protospacer
************************************

17. spacer 3.3|262083|36|NZ_CP016482|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP016482 (Synechococcus sp. PCC 7117 plasmid unnamed5, complete sequence) position: , mismatch: 0, identity: 1.0

aaaacaaaccagcgggaaccccgttagatgcccctg	CRISPR spacer
aaaacaaaccagcgggaaccccgttagatgcccctg	Protospacer
************************************

18. spacer 3.4|262156|34|NZ_CP016482|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP016482 (Synechococcus sp. PCC 7117 plasmid unnamed5, complete sequence) position: , mismatch: 0, identity: 1.0

tataaccaactattgaaagagcgctctatcctgc	CRISPR spacer
tataaccaactattgaaagagcgctctatcctgc	Protospacer
**********************************

19. spacer 3.5|262227|47|NZ_CP016482|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP016482 (Synechococcus sp. PCC 7117 plasmid unnamed5, complete sequence) position: , mismatch: 0, identity: 1.0

ttatgccctgactgggtttcagacgaactgatccgctgatccgcttt	CRISPR spacer
ttatgccctgactgggtttcagacgaactgatccgctgatccgcttt	Protospacer
***********************************************

20. spacer 3.6|262311|35|NZ_CP016482|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP016482 (Synechococcus sp. PCC 7117 plasmid unnamed5, complete sequence) position: , mismatch: 0, identity: 1.0

tatttttaggggaggggcgatctccccagatattt	CRISPR spacer
tatttttaggggaggggcgatctccccagatattt	Protospacer
***********************************

21. spacer 3.7|262383|37|NZ_CP016482|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP016482 (Synechococcus sp. PCC 7117 plasmid unnamed5, complete sequence) position: , mismatch: 0, identity: 1.0

cgagagatcgtggtaaccgccctcaacaatgcgagag	CRISPR spacer
cgagagatcgtggtaaccgccctcaacaatgcgagag	Protospacer
*************************************

22. spacer 3.8|262457|36|NZ_CP016482|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP016482 (Synechococcus sp. PCC 7117 plasmid unnamed5, complete sequence) position: , mismatch: 0, identity: 1.0

gaaaaaaatgaacattcccaaagaggttcaggccaa	CRISPR spacer
gaaaaaaatgaacattcccaaagaggttcaggccaa	Protospacer
************************************

23. spacer 3.9|262530|35|NZ_CP016482|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP016482 (Synechococcus sp. PCC 7117 plasmid unnamed5, complete sequence) position: , mismatch: 0, identity: 1.0

cagtttttaccccagcttccgagtgagtgggcatc	CRISPR spacer
cagtttttaccccagcttccgagtgagtgggcatc	Protospacer
***********************************

24. spacer 3.9|262530|35|NZ_CP016482|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP016482 (Synechococcus sp. PCC 7117 plasmid unnamed5, complete sequence) position: , mismatch: 0, identity: 1.0

cagtttttaccccagcttccgagtgagtgggcatc	CRISPR spacer
cagtttttaccccagcttccgagtgagtgggcatc	Protospacer
***********************************

25. spacer 3.10|262602|41|NZ_CP016482|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP016482 (Synechococcus sp. PCC 7117 plasmid unnamed5, complete sequence) position: , mismatch: 0, identity: 1.0

taaacacttgggtgtttacgtctaccaccgagcgaagtcga	CRISPR spacer
taaacacttgggtgtttacgtctaccaccgagcgaagtcga	Protospacer
*****************************************

26. spacer 3.10|262602|41|NZ_CP016482|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP016482 (Synechococcus sp. PCC 7117 plasmid unnamed5, complete sequence) position: , mismatch: 0, identity: 1.0

taaacacttgggtgtttacgtctaccaccgagcgaagtcga	CRISPR spacer
taaacacttgggtgtttacgtctaccaccgagcgaagtcga	Protospacer
*****************************************

27. spacer 3.11|262680|37|NZ_CP016482|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP016482 (Synechococcus sp. PCC 7117 plasmid unnamed5, complete sequence) position: , mismatch: 0, identity: 1.0

ccaactcattgattttcctttcagccctggcattagc	CRISPR spacer
ccaactcattgattttcctttcagccctggcattagc	Protospacer
*************************************

28. spacer 3.11|262680|37|NZ_CP016482|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP016482 (Synechococcus sp. PCC 7117 plasmid unnamed5, complete sequence) position: , mismatch: 0, identity: 1.0

ccaactcattgattttcctttcagccctggcattagc	CRISPR spacer
ccaactcattgattttcctttcagccctggcattagc	Protospacer
*************************************

29. spacer 3.12|262754|38|NZ_CP016482|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP016482 (Synechococcus sp. PCC 7117 plasmid unnamed5, complete sequence) position: , mismatch: 0, identity: 1.0

taagatggcgacgttttttcgataccgggccaaggatg	CRISPR spacer
taagatggcgacgttttttcgataccgggccaaggatg	Protospacer
**************************************

30. spacer 3.12|262754|38|NZ_CP016482|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP016482 (Synechococcus sp. PCC 7117 plasmid unnamed5, complete sequence) position: , mismatch: 0, identity: 1.0

taagatggcgacgttttttcgataccgggccaaggatg	CRISPR spacer
taagatggcgacgttttttcgataccgggccaaggatg	Protospacer
**************************************

31. spacer 3.13|262829|37|NZ_CP016482|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP016482 (Synechococcus sp. PCC 7117 plasmid unnamed5, complete sequence) position: , mismatch: 0, identity: 1.0

caagcactgcgtttccgtcgcattgtgcgctggctaa	CRISPR spacer
caagcactgcgtttccgtcgcattgtgcgctggctaa	Protospacer
*************************************

32. spacer 3.13|262829|37|NZ_CP016482|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP016482 (Synechococcus sp. PCC 7117 plasmid unnamed5, complete sequence) position: , mismatch: 0, identity: 1.0

caagcactgcgtttccgtcgcattgtgcgctggctaa	CRISPR spacer
caagcactgcgtttccgtcgcattgtgcgctggctaa	Protospacer
*************************************

33. spacer 3.14|262903|37|NZ_CP016482|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP016482 (Synechococcus sp. PCC 7117 plasmid unnamed5, complete sequence) position: , mismatch: 0, identity: 1.0

agaggatggcctgggcctctggcaatcagactggttc	CRISPR spacer
agaggatggcctgggcctctggcaatcagactggttc	Protospacer
*************************************

34. spacer 3.14|262903|37|NZ_CP016482|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP016482 (Synechococcus sp. PCC 7117 plasmid unnamed5, complete sequence) position: , mismatch: 0, identity: 1.0

agaggatggcctgggcctctggcaatcagactggttc	CRISPR spacer
agaggatggcctgggcctctggcaatcagactggttc	Protospacer
*************************************

35. spacer 3.15|262977|38|NZ_CP016482|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP016482 (Synechococcus sp. PCC 7117 plasmid unnamed5, complete sequence) position: , mismatch: 0, identity: 1.0

gggctttttgctttttaagacattaagccaagcggatt	CRISPR spacer
gggctttttgctttttaagacattaagccaagcggatt	Protospacer
**************************************

36. spacer 3.15|262977|38|NZ_CP016482|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP016482 (Synechococcus sp. PCC 7117 plasmid unnamed5, complete sequence) position: , mismatch: 0, identity: 1.0

gggctttttgctttttaagacattaagccaagcggatt	CRISPR spacer
gggctttttgctttttaagacattaagccaagcggatt	Protospacer
**************************************

37. spacer 3.16|263052|38|NZ_CP016482|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP016482 (Synechococcus sp. PCC 7117 plasmid unnamed5, complete sequence) position: , mismatch: 0, identity: 1.0

gccttctacaatgacaattgtccgtgaagcttgccctg	CRISPR spacer
gccttctacaatgacaattgtccgtgaagcttgccctg	Protospacer
**************************************

38. spacer 3.16|263052|38|NZ_CP016482|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP016482 (Synechococcus sp. PCC 7117 plasmid unnamed5, complete sequence) position: , mismatch: 0, identity: 1.0

gccttctacaatgacaattgtccgtgaagcttgccctg	CRISPR spacer
gccttctacaatgacaattgtccgtgaagcttgccctg	Protospacer
**************************************

39. spacer 3.17|263127|34|NZ_CP016482|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP016482 (Synechococcus sp. PCC 7117 plasmid unnamed5, complete sequence) position: , mismatch: 0, identity: 1.0

taattttgcttcctctgctgctttctttgtggtg	CRISPR spacer
taattttgcttcctctgctgctttctttgtggtg	Protospacer
**********************************

40. spacer 3.18|263198|36|NZ_CP016482|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP016482 (Synechococcus sp. PCC 7117 plasmid unnamed5, complete sequence) position: , mismatch: 0, identity: 1.0

tttattttgagtctgcctatcagtcttacatcgatt	CRISPR spacer
tttattttgagtctgcctatcagtcttacatcgatt	Protospacer
************************************

41. spacer 3.19|263271|38|NZ_CP016482|CRISPRCasFinder,CRT matches to NZ_CP016482 (Synechococcus sp. PCC 7117 plasmid unnamed5, complete sequence) position: , mismatch: 0, identity: 1.0

aaaaatgtgggcatcgcaccagactgcaaagtcagaag	CRISPR spacer
aaaaatgtgggcatcgcaccagactgcaaagtcagaag	Protospacer
**************************************

42. spacer 3.20|263346|33|NZ_CP016482|CRISPRCasFinder,CRT matches to NZ_CP016482 (Synechococcus sp. PCC 7117 plasmid unnamed5, complete sequence) position: , mismatch: 0, identity: 1.0

gctcaatcaacctacgatttttaaggagaaaac	CRISPR spacer
gctcaatcaacctacgatttttaaggagaaaac	Protospacer
*********************************

43. spacer 3.21|263416|35|NZ_CP016482|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP016482 (Synechococcus sp. PCC 7117 plasmid unnamed5, complete sequence) position: , mismatch: 0, identity: 1.0

gaggtgcccaaccagacggtgaacaaggcagtaaa	CRISPR spacer
gaggtgcccaaccagacggtgaacaaggcagtaaa	Protospacer
***********************************

44. spacer 3.22|263488|35|NZ_CP016482|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP016482 (Synechococcus sp. PCC 7117 plasmid unnamed5, complete sequence) position: , mismatch: 0, identity: 1.0

gtgcgccatgtgcgggggactcaggacgaattcgt	CRISPR spacer
gtgcgccatgtgcgggggactcaggacgaattcgt	Protospacer
***********************************

45. spacer 3.23|263560|35|NZ_CP016482|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP016482 (Synechococcus sp. PCC 7117 plasmid unnamed5, complete sequence) position: , mismatch: 0, identity: 1.0

aatgtaatcatgtgtcgtggcgtggatatggcgct	CRISPR spacer
aatgtaatcatgtgtcgtggcgtggatatggcgct	Protospacer
***********************************

46. spacer 3.24|263632|35|NZ_CP016482|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP016482 (Synechococcus sp. PCC 7117 plasmid unnamed5, complete sequence) position: , mismatch: 0, identity: 1.0

ctgtttaattgttttcccagctttgacgacactta	CRISPR spacer
ctgtttaattgttttcccagctttgacgacactta	Protospacer
***********************************

47. spacer 3.25|263704|38|NZ_CP016482|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP016482 (Synechococcus sp. PCC 7117 plasmid unnamed5, complete sequence) position: , mismatch: 0, identity: 1.0

acctctagagtcgaaagaccacccttaataaatttcaa	CRISPR spacer
acctctagagtcgaaagaccacccttaataaatttcaa	Protospacer
**************************************

48. spacer 3.26|263779|35|NZ_CP016482|CRISPRCasFinder,CRT matches to NZ_CP016482 (Synechococcus sp. PCC 7117 plasmid unnamed5, complete sequence) position: , mismatch: 0, identity: 1.0

cacaaatgctcttttaactaatcctgccttggctg	CRISPR spacer
cacaaatgctcttttaactaatcctgccttggctg	Protospacer
***********************************

49. spacer 3.27|263851|44|NZ_CP016482|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP016482 (Synechococcus sp. PCC 7117 plasmid unnamed5, complete sequence) position: , mismatch: 0, identity: 1.0

ctttctgctgaaaaattatgcttctgtctatattttagacatgg	CRISPR spacer
ctttctgctgaaaaattatgcttctgtctatattttagacatgg	Protospacer
********************************************

50. spacer 3.28|263932|34|NZ_CP016482|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP016482 (Synechococcus sp. PCC 7117 plasmid unnamed5, complete sequence) position: , mismatch: 0, identity: 1.0

ctttctgctgagggcaaaatcacacaagcaaatg	CRISPR spacer
ctttctgctgagggcaaaatcacacaagcaaatg	Protospacer
**********************************

51. spacer 3.29|264003|36|NZ_CP016482|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP016482 (Synechococcus sp. PCC 7117 plasmid unnamed5, complete sequence) position: , mismatch: 0, identity: 1.0

tgatgttgtgatgcacattgttaagaaagatgcccg	CRISPR spacer
tgatgttgtgatgcacattgttaagaaagatgcccg	Protospacer
************************************

52. spacer 3.30|264076|35|NZ_CP016482|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP016482 (Synechococcus sp. PCC 7117 plasmid unnamed5, complete sequence) position: , mismatch: 0, identity: 1.0

tgaggaaatcgacgttctccgggctgaagtggact	CRISPR spacer
tgaggaaatcgacgttctccgggctgaagtggact	Protospacer
***********************************

53. spacer 3.31|264148|38|NZ_CP016482|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP016482 (Synechococcus sp. PCC 7117 plasmid unnamed5, complete sequence) position: , mismatch: 0, identity: 1.0

ttttcctggctttattgtgggggctgtccttggtgatt	CRISPR spacer
ttttcctggctttattgtgggggctgtccttggtgatt	Protospacer
**************************************

54. spacer 3.32|264223|35|NZ_CP016482|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP016482 (Synechococcus sp. PCC 7117 plasmid unnamed5, complete sequence) position: , mismatch: 0, identity: 1.0

cagtttttaccccagcttccgagtgagtgggcatc	CRISPR spacer
cagtttttaccccagcttccgagtgagtgggcatc	Protospacer
***********************************

55. spacer 3.32|264223|35|NZ_CP016482|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP016482 (Synechococcus sp. PCC 7117 plasmid unnamed5, complete sequence) position: , mismatch: 0, identity: 1.0

cagtttttaccccagcttccgagtgagtgggcatc	CRISPR spacer
cagtttttaccccagcttccgagtgagtgggcatc	Protospacer
***********************************

56. spacer 3.33|264295|41|NZ_CP016482|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP016482 (Synechococcus sp. PCC 7117 plasmid unnamed5, complete sequence) position: , mismatch: 0, identity: 1.0

taaacacttgggtgtttacgtctaccaccgagcgaagtcga	CRISPR spacer
taaacacttgggtgtttacgtctaccaccgagcgaagtcga	Protospacer
*****************************************

57. spacer 3.33|264295|41|NZ_CP016482|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP016482 (Synechococcus sp. PCC 7117 plasmid unnamed5, complete sequence) position: , mismatch: 0, identity: 1.0

taaacacttgggtgtttacgtctaccaccgagcgaagtcga	CRISPR spacer
taaacacttgggtgtttacgtctaccaccgagcgaagtcga	Protospacer
*****************************************

58. spacer 3.34|264373|37|NZ_CP016482|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP016482 (Synechococcus sp. PCC 7117 plasmid unnamed5, complete sequence) position: , mismatch: 0, identity: 1.0

ccaactcattgattttcctttcagccctggcattagc	CRISPR spacer
ccaactcattgattttcctttcagccctggcattagc	Protospacer
*************************************

59. spacer 3.34|264373|37|NZ_CP016482|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP016482 (Synechococcus sp. PCC 7117 plasmid unnamed5, complete sequence) position: , mismatch: 0, identity: 1.0

ccaactcattgattttcctttcagccctggcattagc	CRISPR spacer
ccaactcattgattttcctttcagccctggcattagc	Protospacer
*************************************

60. spacer 3.35|264447|38|NZ_CP016482|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP016482 (Synechococcus sp. PCC 7117 plasmid unnamed5, complete sequence) position: , mismatch: 0, identity: 1.0

taagatggcgacgttttttcgataccgggccaaggatg	CRISPR spacer
taagatggcgacgttttttcgataccgggccaaggatg	Protospacer
**************************************

61. spacer 3.35|264447|38|NZ_CP016482|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP016482 (Synechococcus sp. PCC 7117 plasmid unnamed5, complete sequence) position: , mismatch: 0, identity: 1.0

taagatggcgacgttttttcgataccgggccaaggatg	CRISPR spacer
taagatggcgacgttttttcgataccgggccaaggatg	Protospacer
**************************************

62. spacer 3.36|264522|37|NZ_CP016482|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP016482 (Synechococcus sp. PCC 7117 plasmid unnamed5, complete sequence) position: , mismatch: 0, identity: 1.0

caagcactgcgtttccgtcgcattgtgcgctggctaa	CRISPR spacer
caagcactgcgtttccgtcgcattgtgcgctggctaa	Protospacer
*************************************

63. spacer 3.36|264522|37|NZ_CP016482|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP016482 (Synechococcus sp. PCC 7117 plasmid unnamed5, complete sequence) position: , mismatch: 0, identity: 1.0

caagcactgcgtttccgtcgcattgtgcgctggctaa	CRISPR spacer
caagcactgcgtttccgtcgcattgtgcgctggctaa	Protospacer
*************************************

64. spacer 3.37|264596|37|NZ_CP016482|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP016482 (Synechococcus sp. PCC 7117 plasmid unnamed5, complete sequence) position: , mismatch: 0, identity: 1.0

agaggatggcctgggcctctggcaatcagactggttc	CRISPR spacer
agaggatggcctgggcctctggcaatcagactggttc	Protospacer
*************************************

65. spacer 3.37|264596|37|NZ_CP016482|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP016482 (Synechococcus sp. PCC 7117 plasmid unnamed5, complete sequence) position: , mismatch: 0, identity: 1.0

agaggatggcctgggcctctggcaatcagactggttc	CRISPR spacer
agaggatggcctgggcctctggcaatcagactggttc	Protospacer
*************************************

66. spacer 3.38|264670|38|NZ_CP016482|CRISPRCasFinder,CRT matches to NZ_CP016482 (Synechococcus sp. PCC 7117 plasmid unnamed5, complete sequence) position: , mismatch: 0, identity: 1.0

gggctttttgctttttaagacattaagccaagcggatt	CRISPR spacer
gggctttttgctttttaagacattaagccaagcggatt	Protospacer
**************************************

67. spacer 3.38|264670|38|NZ_CP016482|CRISPRCasFinder,CRT matches to NZ_CP016482 (Synechococcus sp. PCC 7117 plasmid unnamed5, complete sequence) position: , mismatch: 0, identity: 1.0

gggctttttgctttttaagacattaagccaagcggatt	CRISPR spacer
gggctttttgctttttaagacattaagccaagcggatt	Protospacer
**************************************

68. spacer 1.3|234|36|NZ_CP016482|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP016485 (Synechococcus sp. PCC 8807 plasmid unnamed2, complete sequence) position: , mismatch: 1, identity: 0.972

cctagagctagaacgggctaaatttggctgcaatga	CRISPR spacer
cctagagctagaacgggctaaatttggctgcaagga	Protospacer
********************************* **

69. spacer 3.1|261939|34|NZ_CP016482|PILER-CR,CRISPRCasFinder,CRT matches to NC_021289 (Burkholderia insecticola plasmid p1, complete sequence) position: , mismatch: 8, identity: 0.765

actcgccgaagcctgcacgggcatcaaaaagagg	CRISPR spacer
actcgccgaagccagcgcgggcatgcatgtgacg	Protospacer
************* **.*******  * . ** *

70. spacer 3.4|262156|34|NZ_CP016482|PILER-CR,CRISPRCasFinder,CRT matches to MH648987 (Siphoviridae sp. isolate ctcj11, complete genome) position: , mismatch: 8, identity: 0.765

tataaccaactattgaaagagcgctctatcctgc	CRISPR spacer
gataagcatctattgaaagagcgctgtcacttcc	Protospacer
 **** ** **************** *  *.* *

71. spacer 3.17|263127|34|NZ_CP016482|PILER-CR,CRISPRCasFinder,CRT matches to NC_011412 (Clostridium perfringens plasmid pCP8533etx, complete sequence) position: , mismatch: 8, identity: 0.765

taattttgcttcctctgctgctttctttgtggtg	CRISPR spacer
taattttactttctctgctgctttctcttttaaa	Protospacer
*******.***.**************.* * . .

72. spacer 3.17|263127|34|NZ_CP016482|PILER-CR,CRISPRCasFinder,CRT matches to NC_019687 (Clostridium perfringens plasmid pCpb2-CP1, complete sequence) position: , mismatch: 8, identity: 0.765

taattttgcttcctctgctgctttctttgtggtg	CRISPR spacer
taattttactttctctgctgctttctcttttaaa	Protospacer
*******.***.**************.* * . .

73. spacer 3.17|263127|34|NZ_CP016482|PILER-CR,CRISPRCasFinder,CRT matches to NC_007772 (Clostridium perfringens CPE str. F4969 plasmid pCPF4969, complete sequence) position: , mismatch: 8, identity: 0.765

taattttgcttcctctgctgctttctttgtggtg	CRISPR spacer
taattttactttctctgctgctttctcttttaaa	Protospacer
*******.***.**************.* * . .

74. spacer 3.17|263127|34|NZ_CP016482|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013041 (Clostridium perfringens strain JP55 plasmid pJFP55F, complete sequence) position: , mismatch: 8, identity: 0.765

taattttgcttcctctgctgctttctttgtggtg	CRISPR spacer
taattttactttctctgctgctttctcttttaaa	Protospacer
*******.***.**************.* * . .

75. spacer 3.17|263127|34|NZ_CP016482|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013039 (Clostridium perfringens strain JP838 plasmid pJFP838D, complete sequence) position: , mismatch: 8, identity: 0.765

taattttgcttcctctgctgctttctttgtggtg	CRISPR spacer
taattttactttctctgctgctttctcttttaaa	Protospacer
*******.***.**************.* * . .

76. spacer 3.17|263127|34|NZ_CP016482|PILER-CR,CRISPRCasFinder,CRT matches to NC_015712 (Clostridium perfringens plasmid pCPPB-1, complete sequence) position: , mismatch: 8, identity: 0.765

taattttgcttcctctgctgctttctttgtggtg	CRISPR spacer
taattttactttctctgctgctttctcttttaaa	Protospacer
*******.***.**************.* * . .

77. spacer 3.17|263127|34|NZ_CP016482|PILER-CR,CRISPRCasFinder,CRT matches to MN693539 (Marine virus AFVG_25M73, complete genome) position: , mismatch: 9, identity: 0.735

taattttgcttcctctgctgctttctttgtggtg	CRISPR spacer
tgttttggcttcttctgctgctttcttgctgaat	Protospacer
*. *** *****.**************  **.

78. spacer 3.1|261939|34|NZ_CP016482|PILER-CR,CRISPRCasFinder,CRT matches to NC_008607 (Pelobacter propionicus DSM 2379 plasmid pPRO1, complete sequence) position: , mismatch: 10, identity: 0.706

actcgccgaagcctgcacgggcatcaaaaagagg	CRISPR spacer
actcggcgaagcctgcacgggcttctcgtgatag	Protospacer
***** **************** **  . .. .*

79. spacer 3.17|263127|34|NZ_CP016482|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP026221 (Aeromonas sp. ASNIH4 plasmid pAER-f909, complete sequence) position: , mismatch: 10, identity: 0.706

taattttgcttcctctgctgctttctttgtggtg	CRISPR spacer
tatttttgctttctctgctgcttttcccgggcca	Protospacer
** ********.************....* * ..

80. spacer 3.20|263346|33|NZ_CP016482|CRISPRCasFinder,CRT matches to JN882284 (Cronobacter phage vB_CsaM_GAP31, complete genome) position: , mismatch: 10, identity: 0.697

gctcaatcaacctacgatttttaaggagaaaac	CRISPR spacer
gaaggtgaaacctgggatttttaaggagaaaaa	Protospacer
*   .   *****. *****************

81. spacer 3.1|261939|34|NZ_CP016482|PILER-CR,CRISPRCasFinder,CRT matches to NC_011887 (Methylobacterium nodulans ORS 2060 plasmid pMNOD02, complete sequence) position: , mismatch: 11, identity: 0.676

actcgccgaagcctgcacgggcatcaaaaagagg	CRISPR spacer
cctcgccgagggctgcacgggcatcgcgctgctc	Protospacer
 ********.* *************. .  *

82. spacer 3.28|263932|34|NZ_CP016482|CRISPRCasFinder,CRT,PILER-CR matches to KR905066 (Lactobacillus phage CL1, complete genome) position: , mismatch: 11, identity: 0.676

ctttctgctgagggcaaaatcacacaagcaaatg	CRISPR spacer
aaccacgatgaggcaaaaatcacacaagcaaaaa	Protospacer
  .. .* *****  ***************** .

83. spacer 3.28|263932|34|NZ_CP016482|CRISPRCasFinder,CRT,PILER-CR matches to MK448702 (Streptococcus phage Javan199, complete genome) position: , mismatch: 11, identity: 0.676

ctttctgctgagggcaaaatcacacaagcaaatg	CRISPR spacer
aaagatgctgaggacaaaatcaaacaagcgcagt	Protospacer
     ********.******** ******. *

84. spacer 3.28|263932|34|NZ_CP016482|CRISPRCasFinder,CRT,PILER-CR matches to NC_028835 (Lactobacillus phage CL2, complete genome) position: , mismatch: 11, identity: 0.676

ctttctgctgagggcaaaatcacacaagcaaatg	CRISPR spacer
aaccacgatgaggcaaaaatcacacaagcaaaaa	Protospacer
  .. .* *****  ***************** .

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP016477

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP016477_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP016477_1

441641-441770

Orphan

Consensus_repeat	Method
CTTCAAGTCTGCGTTGCTCCTCCTCAGCTCTTCG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP016477_1

>merge|NZ_CP016477|1|441641-441770|CRISPRCasFinder
TTCTAGCTCGGCGTTGCTCTTCTTCAAGTCTGCGTTGCTCCTCCTCAGCTCTTCGAGACTCAGCTGCTCGTTCCTGAGCCATTCTTCGTTCTTCCGCTTCAATTCTGCGTTGCTCCTCCTCAGCTCTTCG

>NZ_CP016477|1|1|441641-441770|CRISPRCasFinder
TTCTAGCTCGGCGTTGCTCTTCTTCAAGTCTGCG	TTGCTCCTCCTCAGCTCTTCGAGACTCAGCTGCTCGTTCCTGAGCCATTCTTCGTTCTTCCG
CTTCAATTCTGCGTTGCTCCTCCTCAGCTCTTCG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP016477.1\|WP_065710031.1\|442112_442535_-\|DUF29-domain-containing-protein	unknown	unknown	gnl\|CDD\|366774
NZ_CP016477.1\|WP_071925376.1\|439613_440906_-\|glycosyltransferase	unknown	unknown	gnl\|CDD\|340825
NZ_CP016477.1\|WP_065710037.1\|450193_451255_-\|N-acetylneuraminate-synthase	unknown	unknown	gnl\|CDD\|274655
NZ_CP016477.1\|WP_012306032.1\|434075_435392_-\|urea-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|372603
NZ_CP016477.1\|WP_065710023.1\|432797_433976_-\|branched-chain-amino-acid-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|200272
NZ_CP016477.1\|WP_084448946.1\|446431_447805_-\|aminotransferase-class-I/II-fold-pyridoxal-phosphate-dependent-enzyme	unknown	unknown	gnl\|CDD\|99740
NZ_CP016477.1\|WP_071925375.1\|438417_439611_+\|glycosyltransferase	unknown	unknown	gnl\|CDD\|340850
NZ_CP016477.1\|WP_065710033.1\|443755_445051_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP016477.1\|WP_065710038.1\|451257_451959_-\|acylneuraminate-cytidylyltransferase-family-protein	unknown	unknown	gnl\|CDD\|133006
NZ_CP016477.1\|WP_065710036.1\|449686_450151_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|366181
NZ_CP016477.1\|WP_065710026.1\|436941_438207_-\|bifunctional-folylpolyglutamate-synthase/dihydrofolate-synthase	unknown	unknown	gnl\|CDD\|223362
NZ_CP016477.1\|WP_065710024.1\|435611_436562_-\|ADP-ribosylglycohydrolase-family-protein	unknown	unknown	gnl\|CDD\|224315
NZ_CP016477.1\|WP_065710022.1\|430460_431582_-\|urea-ABC-transporter-ATP-binding-protein-UrtD	unknown	unknown	gnl\|CDD\|274568
NZ_CP016477.1\|WP_065710035.1\|447873_448773_-\|class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|372616
NZ_CP016477.1\|WP_065710034.1\|445131_446412_-\|oligosaccharide-flippase-family-protein	unknown	unknown	gnl\|CDD\|240533
NZ_CP016477.1\|WP_065710032.1\|442646_443735_-\|UDP-N-acetylglucosamine-2-epimerase-(non-hydrolyzing)	unknown	unknown	gnl\|CDD\|340819
NZ_CP016477.1\|WP_084448945.1\|440917_441313_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|376768
NZ_CP016477.1\|WP_071925377.1\|448782_449646_-\|sugar-phosphate-isomerase/epimerase	unknown	unknown	gnl\|CDD\|224007
NZ_CP016477.1\|WP_041443328.1\|431591_432761_-\|urea-ABC-transporter-permease-subunit-UrtC	unknown	unknown	gnl\|CDD\|132449
NZ_CP016477.1\|WP_065710025.1\|436568_436958_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP016477.1\|WP_065710031.1\|442112_442535_-\|DUF29-domain-containing-protein	gnl\|CDD\|366774	pfam01724, DUF29, Domain of unknown function DUF29. This family consists of various hypothetical proteins from cyanobacteria, none of which are functionally described. The aligned region is approximately 120-140 amino acids long corresponding to almost the entire length of the proteins in the family. Structure 3fcn is a small protein that has a novel all-alpha fold. The N-terminal helical hairpin is likely to function as a dimerization module. This protein is a member of PFam family PF01724. The function of this protein is unknown. One protein sequence contains a fusion of this protein and a DnaB domain, suggesting a possible role in DNA helicase activity (hypothetical). Dali hits have low Z and high rmsd, suggesting probably only topological similarities (not functional relevance) (details derived from TOPSAN). The family has several highly conserved sequence motifs, including YD/ExD, DxxNVxEEIE, and CPY/F/W, as well as conserved tryptophans.	1.33271e-55
NZ_CP016477.1\|WP_071925376.1\|439613_440906_-\|glycosyltransferase	gnl\|CDD\|340825	cd03794, GT4_WbuB-like, Escherichia coli WbuB and similar proteins. This family is most closely related to the GT1 family of glycosyltransferases. WbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.	5.2594e-36
NZ_CP016477.1\|WP_065710037.1\|450193_451255_-\|N-acetylneuraminate-synthase	gnl\|CDD\|274655	TIGR03569, ORF_8_similar_to_NeuB_family, N-acetylneuraminate synthase. This family is a subset of the pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.	0
NZ_CP016477.1\|WP_012306032.1\|434075_435392_-\|urea-ABC-transporter-substrate-binding-protein	gnl\|CDD\|372603	pfam13433, Peripla_BP_5, Periplasmic binding protein domain. This domain is found in a variety of bacterial periplasmic binding proteins.	0
NZ_CP016477.1\|WP_065710023.1\|432797_433976_-\|branched-chain-amino-acid-ABC-transporter-permease	gnl\|CDD\|200272	TIGR03409, urea_trans_UrtB, urea ABC transporter, permease protein UrtB. Members of this protein family are ABC transporter permease proteins associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. [Transport and binding proteins, Amino acids, peptides and amines].	2.62006e-70
NZ_CP016477.1\|WP_084448946.1\|446431_447805_-\|aminotransferase-class-I/II-fold-pyridoxal-phosphate-dependent-enzyme	gnl\|CDD\|99740	cd00616, AHBA_syn, 3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn). AHBA_syn family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The members of this CD are involved in various biosynthetic pathways for secondary metabolites. Some well studied proteins in this CD are AHBA_synthase, protein product of pleiotropic regulatory gene degT, Arnb aminotransferase and pilin glycosylation protein. The prototype of this family, the AHBA_synthase, is a dimeric PLP dependent enzyme. AHBA_syn is the terminal enzyme of 3-amino-5-hydroxybenzoic acid (AHBA) formation which is involved in the biosynthesis of ansamycin antibiotics, including rifamycin B. Some members of this CD are involved in 4-amino-6-deoxy-monosaccharide D-perosamine synthesis. Perosamine is an important element in the glycosylation of several cell products, such as antibiotics and lipopolysaccharides of gram-positive and gram-negative bacteria. The pilin glycosylation protein encoded by gene pglA, is a galactosyltransferase involved in pilin glycosylation. Additionally, this CD consists of ArnB (PmrH) aminotransferase, a 4-amino-4-deoxy-L-arabinose lipopolysaccharide-modifying enzyme. This CD also consists of several predicted pyridoxal phosphate-dependent enzymes apparently involved in regulation of cell wall biogenesis. The catalytic lysine which is present in all characterized PLP dependent enzymes is replaced by histidine in some members of this CD.	7.46765e-176
NZ_CP016477.1\|WP_071925375.1\|438417_439611_+\|glycosyltransferase	gnl\|CDD\|340850	cd03823, GT4_ExpE7-like, glycosyltransferase ExpE7 and similar proteins. This family is most closely related to the GT4 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).	2.50081e-50
NZ_CP016477.1\|WP_065710038.1\|451257_451959_-\|acylneuraminate-cytidylyltransferase-family-protein	gnl\|CDD\|133006	cd02513, CMP-NeuAc_Synthase, CMP-NeuAc_Synthase activates N-acetylneuraminic acid by adding CMP moiety. CMP-N-acetylneuraminic acid synthetase (CMP-NeuAc synthetase) or acylneuraminate cytidylyltransferase catalyzes the transfer the CMP moiety of CTP to the anomeric hydroxyl group of NeuAc in the presence of Mg++. It is the second to last step in the sialylation of the oligosaccharide component of glycoconjugates by providing the activated sugar-nucleotide cytidine 5'-monophosphate N-acetylneuraminic acid (CMP-Neu5Ac), the substrate for sialyltransferases. Eukaryotic CMP-NeuAc synthetases are predominantly located in the nucleus. The activated CMP-Neu5Ac diffuses from the nucleus into the cytoplasm.	3.48402e-95
NZ_CP016477.1\|WP_065710036.1\|449686_450151_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	3.71653e-13
NZ_CP016477.1\|WP_065710026.1\|436941_438207_-\|bifunctional-folylpolyglutamate-synthase/dihydrofolate-synthase	gnl\|CDD\|223362	COG0285, FolC, Folylpolyglutamate synthase [Coenzyme metabolism].	2.08242e-149
NZ_CP016477.1\|WP_065710024.1\|435611_436562_-\|ADP-ribosylglycohydrolase-family-protein	gnl\|CDD\|224315	COG1397, DraG, ADP-ribosylglycohydrolase [Posttranslational modification, protein turnover, chaperones].	4.16491e-75
NZ_CP016477.1\|WP_065710022.1\|430460_431582_-\|urea-ABC-transporter-ATP-binding-protein-UrtD	gnl\|CDD\|274568	TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. [Transport and binding proteins, Amino acids, peptides and amines].	2.91496e-150
NZ_CP016477.1\|WP_071925377.1\|448782_449646_-\|sugar-phosphate-isomerase/epimerase	gnl\|CDD\|224007	COG1082, IolE, Sugar phosphate isomerases/epimerases [Carbohydrate transport and metabolism].	2.13692e-11
NZ_CP016477.1\|WP_065710034.1\|445131_446412_-\|oligosaccharide-flippase-family-protein	gnl\|CDD\|240533	cd13128, MATE_Wzx_like, Wzx, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins. Escherichia coli Wzx and related proteins from other gram-negative bacteria are thought to act as flippases, assisting in the membrane translocation of lipopolysaccharides including those containing O-antigens. Proteins from the MATE family are involved in exporting metabolites across the cell membrane and are often responsible for multidrug resistance (MDR).	4.59007e-34
NZ_CP016477.1\|WP_065710032.1\|442646_443735_-\|UDP-N-acetylglucosamine-2-epimerase-(non-hydrolyzing)	gnl\|CDD\|340819	cd03786, GTB_UDP-GlcNAc_2-Epimerase, UDP-N-acetylglucosamine 2-epimerase and similar proteins. Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family (EC 5.1.3.14) are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.	1.1004e-139
NZ_CP016477.1\|WP_084448945.1\|440917_441313_-\|hypothetical-protein	gnl\|CDD\|376768	pfam02350, Epimerase_2, UDP-N-acetylglucosamine 2-epimerase. This family consists of UDP-N-acetylglucosamine 2-epimerases EC:5.1.3.14 this enzyme catalyzes the production of UDP-ManNAc from UDP-GlcNAc. Note that some of the enzymes is this family are bifunctional, in these instances Pfam matches only the N-terminal half of the protein suggesting that the additional C-terminal part (when compared to mono-functional members of this family) is responsible for the UPD-N-acetylmannosamine kinase activity of these enzymes. This hypothesis is further supported by the assumption that the C-terminal part of rat Gne is the kinase domain.	4.91078e-36
NZ_CP016477.1\|WP_041443328.1\|431591_432761_-\|urea-ABC-transporter-permease-subunit-UrtC	gnl\|CDD\|132449	TIGR03408, urea_trans_UrtC, urea ABC transporter, permease protein UrtC. Members of this protein family are ABC transporter permease proteins associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. [Transport and binding proteins, Amino acids, peptides and amines].	5.48495e-150
NZ_CP016477.1\|WP_065710035.1\|447873_448773_-\|class-I-SAM-dependent-methyltransferase	gnl\|CDD\|372616	pfam13489, Methyltransf_23, Methyltransferase domain. This family appears to be a methyltransferase domain.	3.58766e-24

>NZ_CP016477.1|WP_084448945.1|440917_441313_-|hypothetical-protein
MPVVFPLYPHTRKALEKANLPIMAQTLAVIEPVGYLDMVMLEKNARLTITDSGGVQKEAFFYGVPCVTLREETEWVELVELGWNYLLPPVDQATMQEQLQQRFEAVPPPLDTTKPYGDGKAAQLIVHHLLS
>NZ_CP016477.1|WP_071925376.1|439613_440906_-|glycosyltransferase
MKILIIAHDFPPTNRSASLRPYSWAKYWKKLGHEVCVVTAKLESFRTPLDLESYPELESMWVEEVQYLPIKSKLNNSNHQPSSSTKYTKLRSFFRKANTFLGTGSLFFASMLWITPAIKKISQIYKKNNFDIVVSTFGPPAAHIIGHYVKKRHKEIFWVADYRDLWSDGHLFESKGIFSRLERYIEKKYTASCDLLTVVSEPLKLTLENKLGKPTFVIENGFDIDEYSLKSMSANLKTSKVRMVYTGTVLEKQNPLSLFEALSELSKQQKNIDKKIEVIFYSLSFQYINSLIERFRVSKIVTIKPYLPRKEILNIQKEADALIFLDWNDPKVSGILTNKIFEYMYSGTLILAIGSDKRTIASDLIEEVGVGVYLGNSVSSIKDVIKKMLNAEQLSYSPNPEILKKYTREALAAKLIQLIIQRADSNKNNQ
>NZ_CP016477.1|WP_071925375.1|438417_439611_+|glycosyltransferase
MKILVIHNRYRNRAGEDSTFDQEVALLQQSNHSIQVWTKDNKDINVGNFLDAIRLALSTIWSSKSYRELLAIIDDFKPDIIHVHNTLPLLSPSIFYAAKKRTIPTVITIQNYRLSCPKGTFFRNNSTCEICLNKSLLFSVYYKCYRDSRLQTATVALMLQVHRLLRTWTETITAYIAVSPFVRNKLVEMGIPAEKIYLKPNFLQGETKWLETIDFGKYYLFVGRLETEKGILNLLNAYQNLKSEYPLYIVGSGSLQSVVEQYASDNHKIQYLGQRTREEVIQYMQGAIALIFPSIWYEGFPLTILEAYSQSLPVIGSNIGSVSYAIQNGITGLTYPAGDEKALKRALLSIENDRKDWIDLKKNILNNLDEIYFVDNNISFLVEIYQRIVKDYYCKEN
>NZ_CP016477.1|WP_065710026.1|436941_438207_-|bifunctional-folylpolyglutamate-synthase/dihydrofolate-synthase
MSQVAIANLLETFERFGINLGLTRITQLLANLGHPERQVPILHVAGTNGKGSVCAYLSSILAAAGYRVGRFTSPHLVDWTERICLNNQPIPSERLLTVLEQVKAAIDPNQETPTQFEVITAAGFLYFAQEQVDIAVIEVGLGGRLDSTNVCDRPLVSVITSIGMDHWQRLGNSLDKIAGEKAGILKQDCPAVIGEVPEIAAKVIREKISELNCPATWIQPAQAIHPPSGGEQRRIAKYGDFEYFLPLLGDIQLHNSAIAIETIYALRKQGWQISDQQLRDGLAKTRWAGRIEWHQWQGQKILIDGAHNGVAAAELRKYVDTLPQPVTWVMGMLSTKDHQNVLQALLRDGDHLHLLPVGGHRSADPQALAMLAQVICPALASCQTHETLPEALDQAIASPHTRVLCGSLYLLGEFLSYAAKI
>NZ_CP016477.1|WP_065710025.1|436568_436958_-|hypothetical-protein
MQPKFKTRKAWNQAEMLLQPAFIRVVDNFRAQLEDSPWTGEYEDIQDPYPGYILRLKKDTIETTVNIWDLCYQICFVAYPTGALVENGCAVEIDETLFEASGAVDWQKLEAKTQQLIHNMFEQFDHLGG
>NZ_CP016477.1|WP_065710024.1|435611_436562_-|ADP-ribosylglycohydrolase-family-protein
MVTQAQIHGGLLGLCVGDALGVPVEFSERRTRQRDPVTTMRGYGTYNQPPGTWSDDSSLTFCLAEAIAEVGLGEELPEHLGRKMGLWLKEAYWTPHGETFDVGNTTAAAIHQILAGINPLEAGGIGERSNGNGSLMRILPLAFCGERLPYADLLDLVHNISYLTHRHPRSLIACGIYISIALELLHGKSIEIAYQQGIQRAEEFYRDSIYKPELSHYERLLVADFATLPRETIAASGYVVHALEAALWCCLNHDNYPNTVLAAVNLGDDTDTTAAIAGGLAGLYYGLDNIPPDWLAQIPRRDNILQLGDRLFRAIR
>NZ_CP016477.1|WP_012306032.1|434075_435392_-|urea-ABC-transporter-substrate-binding-protein
MSNLGRRKFILYSSAALGSSILLKACGQPTETPDTPDSGSTTSTPSGDTIKVGILHSLSGTMAISETTVVEAEQLAIKEINAAGGIDGKQIEAIVEDGASDWDVFKEKAEKLIDQDGVAVVFGCWTSASRKAVKDVFEAKDHMLFYPVQYEGQECSKNIFYTGAAPNQQIEPAVDWLLENKGTEFFLVGSDYVFPRTANTIIKAQLEAKGGTTVGEDYLPLGNTEVTPIITKIKAALPNGGVIFNSLNGDSNVAFFKQIRDAGLTPEQYPVMSVSIAEEEVRQIGPEYLTGHYASWNYFQTVETPENEKWVADFKAEYGEDRVTNDPMEAAYIMVYIWKQAVEAAIANGATDAYDLEAVRSAAIGQEFAAPEGPVTMNVNHHLSKTVRIGQVREDGMFDIVWETDGPIAPQAWNQYVESTKGFACDWSDPTKGEKYAI
>NZ_CP016477.1|WP_065710023.1|432797_433976_-|branched-chain-amino-acid-ABC-transporter-permease
MTELLIGIFNGVSIGSVLLVSALGLAIAFGLMGVINLAHGELMMLGAYTTFVVQNVFRGFGEPFFNLYIIFAIPLAFFVAAAVGFGLERGVIRYLYGRPLETLLATWGVSLILQQFVRSVNWAIAFGVIAFLLKDVIRWAVLQALNLAKIQSATLKTWLDKLNVVAAFALGFGVIFTVNLTKNDALTKPWFSARNVDVTAPKWLQGGLSLGSAQLPYSRIFIIVLTLICLGAMYWFLNKSNWGLRIRAVTQNREMSSCLGIPTARVDALTFALGSGLAGIAGVAIALLGSVGPNTGQNYIVDAFMVVVVGGVGNLLGTILAALGLGIINYLIGSGTFVTVFTSLQAPQFLLDLATFFATTSMAKVMTFVIIIGFLQFRPAGLFPPKGRTAEL
>NZ_CP016477.1|WP_041443328.1|431591_432761_-|urea-ABC-transporter-permease-subunit-UrtC
MNVGLTRRDQRKQQRTKLLIEGAIILALVIITMVILPLILPEFRLKLVGRFLSMAIVALGIDLIWGYTGLLSLGQGIFFALGGYALAMHLSLQLPDGAIPEFFMLYGVEKLPLFWQPFYSLPLTLLAMVLVPGIVAGILGYLVFRNRIKGVYFSIITQAALLVFFNFFNGQQKLINGTNGLKTDTAVFLGQRVGDSGIQLLFYETTIVALLLVYLLCRWLTSGRFGRMLIAIRDDETRVRFTGYDPTWFKVVVFAIAGAIAGISGALYTVQSGIITPNYMEVAFSIEMVISVAVGGRATLIGAIIGTILVNFARIYLSESFPEIWLFFQGALFLIVVTVLPDGIVGWVRDVLWVKVARLLGIGQPVSYPAIADDPDVQNIQEDQLVTKE
>NZ_CP016477.1|WP_065710022.1|430460_431582_-|urea-ABC-transporter-ATP-binding-protein-UrtD
MENILEIENLTVNFDGFKALNNLTFRMGKGELRVIIGPNGAGKTTFLDVITGKVKPTTGKVKFKGKTISGLPEHKVARLGIGRKFQTPRVYQNLTVRENLDLACNRHKNVLPTLFGGTKATERTQTLSLLETIGLTEKADIQAAWLAHGEKQRLEIGMLVAQSPDLLLVDEPVAGLTDEETENVGNLLLALAESHSLIVIEHDMEFVRQIARQVTVLHQGSVLCEGNMNQVQNDPKVIEVYLGEAPTVTPEQMNLIRIAASMAWADGNFAPEQKQVILSRLSEQFTNDSQHQAQLQGELENYLASNLPLEQLTDTLTTENEKITALKLSYEVIRANGVNELESIVYQQLLGQLGLPLEMVREIEAEIDQIYGG
>NZ_CP016477.1|WP_065710031.1|442112_442535_-|DUF29-domain-containing-protein
MSTLYEQDFSQWAETMAELLENGQFSALDIENLVEEVRDLSKRERDRLLSSIRLILHHLLKWDHQPQKRSRSWQVTIERERNNIQQYLEDSPSLKRFLTQQWIDKAYVNARLNAIAETGIDMPKDCSYRLADVLDRSLNF
>NZ_CP016477.1|WP_065710032.1|442646_443735_-|UDP-N-acetylglucosamine-2-epimerase-(non-hydrolyzing)
MKTVTIVGARPQFIKAATVSRLIQNTPGLKEILVHTGQHYDENMSAIFFEEMEIPAPHYHLGIGSGSHGTQTGQMLSAIEAVLIREQPDWVLIYGDTNSTLAGALAAAKLHLPIAHVEAGLHSFNKKMPEEINRILADRISDLLFAPTETAVANLHHEGIRADQIALVGDVMYDAALYYGEKAESRSQILQTLQLQPRNYLLATIHRAENTDNPQRLQAIFGVLSEIAKQIPVVLPLHPRTRKALEKTDLFASLTQALSIIEPVGYLDMVMLEKNARLTITDSGGVQKEAFFYGVPCVTLREETEWVELVELGWNYLLPPVDQATMQEQLQQRFEAVPPPLDTTKPYGDGKAAQLIVHHLLS
>NZ_CP016477.1|WP_065710033.1|443755_445051_-|hypothetical-protein
MIQKLIKISQIFYSSIKSDDWNSINSCDVLLICHDNNRGHNYQNQAYAHLLDSMGDLLRQKNLRIITVAKPFSQLTGQLGYGNPLSFNQSFLWIALQSRLINIFQGQKKRLSWVKEKRKKLWLKILSIACPKVIIVIQPSSSLCQACHSLSIPVYDLQHGIITDQHSWYGQKYRKNTSPIDLPSGFLCWDGSSAKALKKWTTSKRISVDIIGNPWFQRFLVNDYQDFLVKETINKNLFLQNKKPTIIITLQWGMKKHFGQYVPNGVMPYALERTILKLGENYNWLIRLHPVQIRGSEFSTIEKYLAKTFGHIKTVEWEKSSEFPLPIILNLSDLHITYNSSTTIEAAWMNVSTGLLDPEIRPDGNRSQYYSHERNLKIAETVPLNDMDIENWIKLKLGNSKVNSIFTNYQLNLDDFINKIVMTVNNQSGYR
>NZ_CP016477.1|WP_065710034.1|445131_446412_-|oligosaccharide-flippase-family-protein
MLFRKSLYYPLIQSAGIYTITNILNSAIPFLVLPIMTRFLSPEDYGIVSMFSVLVSMMATFIGLNVHGAIARQFYEKESIDFPKFITNCFYILIASSVLTGLVTLFLSGWISQITQFPRKWLSAVFLVCIGQFIITILLTLWQVQKKPIQYGTYQIIQTLINVSFSILFVVFWGMNWQGRIYAQVIAVGIFASLALLILFRENCFKPRFSFFYIKNALDFGIPLIPHTLGGLAIATTDRILITNLVGIQDTGIYVVGSQIGMIISILATSFNRAYSPWLFSQLKKEDVLLNLKIVKLTYVYDFCILMLSITLATTAPFFLKFLVGEKFVSSSQFIIWIALGGAFQGMYYMVTNYIFYAQKTHLLAWVTFLTAVVNLISSYFLIIWNGAIGAAQGTMIAFFLSFLMTWLLSARVYKMPWNLFFQNNF
>NZ_CP016477.1|WP_084448946.1|446431_447805_-|aminotransferase-class-I/II-fold-pyridoxal-phosphate-dependent-enzyme
MQAIDQGSLGTALLVEPDTQVFVGLVTDGDIRRAILKGYGLESPISDVPRPNSKTARLGMSSEEVASLFSDPVRVIPLLDEHHRVADLAIFDNRMRLPVAEPSLGEKELSYVTECVLTGWVSSAGKFVTRFEEMMADFCGTRYAIATSSGTTALHLALLSLGIGCGDEVIVPSLTFIATANAVSYTGARPVFVDSETETWNLDPDLIEQSITPQTKAIIPVHLYGHPCNLDPILEIANRYNLSVIEDAAEAQGALYKGKIVGGIGDLGTFSFYGNKIITTGEGGIVVTNRSDLAEKVRILRDHGMSSQKRYWHPVLGYNYRMTNIQAALGVAQMERVDGIIAAKKRIAQAYTTGLQNVAGIQLPPEADWANSVFWLYSILIDDQAFEMDRDRLMEVLKSKNIETRPLFPPLHLQPIYNQGEVLPIAEKLSKQGLSLPSAISMSNSDIQRTIEAIIGK
>NZ_CP016477.1|WP_065710035.1|447873_448773_-|class-I-SAM-dependent-methyltransferase
MEIEDLLTKQKGSYEVVSETLRDDPSKKIKVVRHQVSDHIQLYPLPSEIEETEFYNTDSQTQNIMGKTDLAVWRKKSVDDTERRVKWLQSLVPGGKVLDIGCGYSFFVDLLAQQKYDALGIDISSCRIKLAQAHLDGKFIRGWIDRPEFIEPYRGQFQAVALFHVLEHVRNPIKFLKQCFEFVAPGGYLLIEVPNCDDELLEQQSDYRNFYWQVAHLSYFTADTLGYALRKASFTAFTIRGVQRYGLRNLLNWLDYGKPQLSAPSFQETKPILQRIESLYKRDREERLTSDTLIVEVRK
>NZ_CP016477.1|WP_071925377.1|448782_449646_-|sugar-phosphate-isomerase/epimerase
MIYISSACSSRKKIGESVKEIAERGFTNIELTGGTHYYNDYEMELLQLQDQYSLNYLVHNYFPPPKNHFVLNLASLNDEIYERSLEHCKNAITLSKKLGSKKLGFHAGFLVDIRVKEIGQKIGKDKLFNKNQAINRFCRAFNILKELVGDDIELYIENNVFSQTNARTYNGQNPFLLTDYDSYLEFRDRLEFELLLDIAHLKVSVNSLKLDFAEQFGTLFNHTNYIHISENDGFHDQNRGFNQDSKTLDELRAYDFRSKTITLEIYRKLESIQQDYEIVKKVLKLEN
>NZ_CP016477.1|WP_065710036.1|449686_450151_-|GNAT-family-N-acetyltransferase
MKNSSELECRILDRQWEPQLVSLFKTIEENGDSLIFHPHPFTEEYAKKLCKYIGQDLYYILVRHGTILGYGMLRGWDEGYTVPSLGVYIHPAYRKKGLGKLMMFFLHAAARTKGANQIRLKVYADNNPALNLYKALKYKFKERENEQLVGFLEI
>NZ_CP016477.1|WP_065710037.1|450193_451255_-|N-acetylneuraminate-synthase
MSQYVRIGNREIGQDKPCFIIAEAGVNHNGNIELAHQLVDAAVKAGADAVKFQSFITEELITPEAPKAQYQVETTGKPGSQYEMLKSVELNDDQHKELKTHCDRAGIIYMCTPYENKSVDMLAHLDVAAYKIASTDTTNLPFLRYVASKGRPVILSTGMSNLAEVEEAVNTIKTGGIAEKIVILHCTSEYPAPINEVNLRAMKTLEQAFGFPVGFSDHTTGIGASPWAVAIGACVVEKHFTLDRTLNGPDHRASLEPAELSALVQTIRDVEAALGDGIKQPTASELPNKPMMQKSLVARRHIKAGKIISAEDLVCKRPGFGLQPSWYDRILGKGVTRDISAESYLTLSDIDWS
>NZ_CP016477.1|WP_065710038.1|451257_451959_-|acylneuraminate-cytidylyltransferase-family-protein
MRTLIIIPARAASKRIPGKNIRNLAGKPLIAWTIELAISLDNRVLVSTDSPEIAKISSQYGAEVPFLRPAELALDKTPDLPVCLHTLDFLKEKENYIPDMVVWLRPTSPLRIPEDVKQCIEKLKNHDADCIRSVCKVNHHPYWMKSFIDENRLVPFLEGKDEREYYQSQKLPPVYRLNGAVDVIRTKFIRQNKMLYGGDMQGYLMPENRSIDIDSELDFTIAEVLIRERMKGK

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Crispr_ID: NZ_CP016477_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP016477_2

1857602-1857716

Orphan

Consensus_repeat	Method
CCAGCCCTTCATAGCTCCACTTCTCTAACGGGACTCTGAACAC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP016477_2

>merge|NZ_CP016477|2|1857602-1857716|CRISPRCasFinder
CCAGCCCTTCATAGCTCCACTTCTCTAACGGGACTCTGAACACGGGCTTTTGGCGATTTTCTGCCATTCATCCCAGACCTTCATAGCTCCACTTCTCTAACGGGACTCTGAACAC

>NZ_CP016477|2|2|1857602-1857716|CRISPRCasFinder
CCAGCCCTTCATAGCTCCACTTCTCTAACGGGACTCTGAACAC	GGGCTTTTGGCGATTTTCTGCCATTCATC
CCAGACCTTCATAGCTCCACTTCTCTAACGGGACTCTGAACAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP016477.1\|WP_065710871.1\|1866177_1867155_-\|metal-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|238557
NZ_CP016477.1\|WP_065710869.1\|1864462_1865326_-\|metal-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|334323
NZ_CP016477.1\|WP_065710870.1\|1865322_1866123_-\|metal-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224046
NZ_CP016477.1\|WP_065711692.1\|1851626_1853585_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224054
NZ_CP016477.1\|WP_065710862.1\|1855734_1856118_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP016477.1\|WP_065710859.1\|1850516_1851623_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|378925
NZ_CP016477.1\|WP_065710858.1\|1849375_1850506_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|378925
NZ_CP016477.1\|WP_071925401.1\|1847497_1848499_+\|endolytic-transglycosylase-MltG	unknown	unknown	gnl\|CDD\|376862
NZ_CP016477.1\|WP_065710860.1\|1853590_1854832_-\|HlyD-family-efflux-transporter-periplasmic-adaptor-subunit	unknown	unknown	gnl\|CDD\|235136
NZ_CP016477.1\|WP_065710866.1\|1860079_1861174_+\|redox-regulated-ATPase-YchF	unknown	unknown	gnl\|CDD\|236583
NZ_CP016477.1\|WP_065710864.1\|1856877_1857384_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP016477.1\|WP_012307343.1\|1863017_1863659_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP016477.1\|WP_065710863.1\|1856120_1856753_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP016477.1\|WP_157094605.1\|1854898_1855738_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP016477.1\|WP_065710865.1\|1858202_1860041_+\|protein-kinase	unknown	unknown	gnl\|CDD\|238121
NZ_CP016477.1\|WP_065710868.1\|1862026_1862890_+\|shikimate-dehydrogenase	unknown	unknown	gnl\|CDD\|234703
NZ_CP016477.1\|WP_065710857.1\|1848519_1849425_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|368438
NZ_CP016477.1\|WP_012307344.1\|1863670_1864306_-\|tRNA-modification-protein-YrdC	unknown	unknown	gnl\|CDD\|223088
NZ_CP016477.1\|WP_084448979.1\|1867333_1867813_+\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|276809
NZ_CP016477.1\|WP_065710867.1\|1861178_1861955_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP016477.1\|WP_065710870.1\|1865322_1866123_-\|metal-ABC-transporter-ATP-binding-protein	gnl\|CDD\|224046	COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism].	1.04695e-119
NZ_CP016477.1\|WP_065711692.1\|1851626_1853585_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224054	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms].	2.37362e-89
NZ_CP016477.1\|WP_065710859.1\|1850516_1851623_-\|ABC-transporter-permease	gnl\|CDD\|378925	pfam12698, ABC2_membrane_3, ABC-2 family transporter protein. This family is related to the ABC-2 membrane transporter family pfam01061.	8.44585e-21
NZ_CP016477.1\|WP_065710858.1\|1849375_1850506_-\|ABC-transporter-permease	gnl\|CDD\|378925	pfam12698, ABC2_membrane_3, ABC-2 family transporter protein. This family is related to the ABC-2 membrane transporter family pfam01061.	1.50385e-34
NZ_CP016477.1\|WP_065710869.1\|1864462_1865326_-\|metal-ABC-transporter-permease	gnl\|CDD\|334323	pfam00950, ABC-3, ABC 3 transport family.	1.95412e-91
NZ_CP016477.1\|WP_065710860.1\|1853590_1854832_-\|HlyD-family-efflux-transporter-periplasmic-adaptor-subunit	gnl\|CDD\|235136	PRK03598, PRK03598, putative efflux pump membrane fusion protein; Provisional.	3.21643e-39
NZ_CP016477.1\|WP_065710871.1\|1866177_1867155_-\|metal-ABC-transporter-substrate-binding-protein	gnl\|CDD\|238557	cd01137, PsaA, Metal binding protein PsaA. These proteins have been shown to function as initial receptors in ABC transport of Mn2+ and as surface adhesins in some eubacterial species. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).	4.55998e-146
NZ_CP016477.1\|WP_084448979.1\|1867333_1867813_+\|tetratricopeptide-repeat-protein	gnl\|CDD\|276809	sd00006, TPR, Tetratricopeptide repeat. The Tetratricopeptide repeat (TPR) typically contains 34 amino acids and is found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans. It is present in a variety of proteins including those involved in chaperone, cell-cycle, transcription, and protein transport complexes. The number of TPR motifs varies among proteins. Those containing 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accommodate an alpha-helix of a target protein. It has been proposed that TPR proteins preferentially interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes.	1.16599e-16
NZ_CP016477.1\|WP_065710866.1\|1860079_1861174_+\|redox-regulated-ATPase-YchF	gnl\|CDD\|236583	PRK09601, PRK09601, redox-regulated ATPase YchF.	0
NZ_CP016477.1\|WP_065710865.1\|1858202_1860041_+\|protein-kinase	gnl\|CDD\|238121	cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment.	1.42954e-45
NZ_CP016477.1\|WP_065710857.1\|1848519_1849425_+\|hypothetical-protein	gnl\|CDD\|368438	pfam05430, Methyltransf_30, S-adenosyl-L-methionine-dependent methyltransferase. This family is a S-adenosyl-L-methionine (SAM)-dependent methyltransferase. It is often found in association with pfam01266, where it is responsible for catalyzing the transfer of a methyl group from S-adenosyl-L-methionine to 5-aminomethyl-2-thiouridine to form 5-methylaminomethyl-2-thiouridine.	5.73051e-37
NZ_CP016477.1\|WP_012307344.1\|1863670_1864306_-\|tRNA-modification-protein-YrdC	gnl\|CDD\|223088	COG0009, SUA5, Putative translation factor (SUA5) [Translation, ribosomal structure and biogenesis].	3.67872e-33
NZ_CP016477.1\|WP_071925401.1\|1847497_1848499_+\|endolytic-transglycosylase-MltG	gnl\|CDD\|376862	pfam02618, YceG, YceG-like family. This family of proteins is found in bacteria. Proteins in this family are typically between 332 and 389 amino acids in length. This family was previously incorrectly annotated and names as aminodeoxychorismate lyase. The structure of YceG was solved by X-ray crystallography.	1.41861e-114
NZ_CP016477.1\|WP_065710868.1\|1862026_1862890_+\|shikimate-dehydrogenase	gnl\|CDD\|234703	PRK00258, aroE, shikimate 5-dehydrogenase; Reviewed.	2.05689e-119

>NZ_CP016477.1|WP_065710864.1|1856877_1857384_+|hypothetical-protein
MTISFKALSFATLGTLSLTTGFMLNAANASPLLRSKPLTQISQSRQSQTFDLRPIPAQNIFQPQFDLAAPVSLVGRWQGNMGSVGDDVLTNFDVTLSPGGNGSWKLYGGQGVMQQGTASASLQGSNVTIQLNGFSGQTVVLEGTLQNGGTKISGKLAGYPNSFFNLQK
>NZ_CP016477.1|WP_065710863.1|1856120_1856753_+|hypothetical-protein
MATNPYQAIGLRHNPFIGTEQLAQTVTFWLDHGYSEAPLPGGNQFVQILGEKGFGKTAHLHHWRSQTGGSYCYVPPNYLQRWQWLKTGAIAYWDEVDRLPLGLFLGGLLRVRFRRGTVVVGSHVDISFWAKLVGLKTITIQLPPLDVPTLQAWAAFKIAAATIPDQTCPLTLSPEKAAEIVTQSQGSWRRAADYLHIWVAAIAFSNSQQD
>NZ_CP016477.1|WP_065710862.1|1855734_1856118_+|hypothetical-protein
MTTLKTPITLHLDRDAVSLGGRLSGDFVWRSENPDRCPKKATVSILWSTEGRGKGDRHRVSSQILDQNMVLNLMGRNHPFTFEIPLDAPIAYDGFLFRLMWSVEVRITFPGLFSDKDTAVAPFQVLA
>NZ_CP016477.1|WP_157094605.1|1854898_1855738_+|hypothetical-protein
MAQHVVFRQIAIADKVYLFLATPGKIPGKMVGNFRRSPMANLKIPKQEYCPYAQYWEPKSTPEGYVLSAESPQSRSWAAMGCAGLFITVWLGIWCGVSFTMFAIALVQIFQGPTLGAIFMLLFLIPFVAIGVGGLIWVGRLLYQKYRIKTGVLILPTYPLYAGETYRVRYRRPLRNGQTTQTALLSATWLHYEWVQYYRGTDLETVTHGLSTQACLERAIGRGVKQLEYTIDLTIPADAKPSIYAPPHNQLRWELQVRCHLPQVVRDTSFFKLRVVSRP
>NZ_CP016477.1|WP_065710860.1|1853590_1854832_-|HlyD-family-efflux-transporter-periplasmic-adaptor-subunit
MTAAATTQNKGIPKFLKIALPIVLVGGLGVGLVNYFLRPEPTQGIELSGRIEGYETNISAKVGGKIEAIAVREGDTVQKGQVIVTLDSAELQASLDGAQARINAAQQQVNQAQLQITVIENQITEAQLTQQQAQDDTTGRVNAAQANVAAAKAQLAQAQAQVKQLEAELALAKADGDRFQELYASGVVSKQRLEQAQTQYLSTKENLDARRAVVAAAAEQVKTAEGNLTQTQASQFNPDIRAVQVQRLQTQLAQAQTQLNAAQAQVQNAQANYNEIAAKLKDLELVSPIDGVVLTRTAEPGEVVATGKTLLTLVNLGDVYLRGFIPEKEVGAIQIGQTAAVFLDSAPEEPLRATVAAIDTEASFTPENIYFRDDRVTQVFGLKLQIENEAGFAKPGMPADATILTDATQNVQR
>NZ_CP016477.1|WP_065711692.1|1851626_1853585_-|ABC-transporter-ATP-binding-protein
MTATSNHSTFSNGLRYGETTIQVAGLRKDYGAVRAVRGIDFSVKAGEIFGLIGPDGAGKTSTFQILAGVMGATAGTVAMLGKTPQESHLDVGYLTQTFSLYLDLSILENLRYVAGLRNVPERIFGDRHRYLLKLMNLDQFPNRLARQLSGGMKQKLALCCALIAQPKILLLDEPTTGVDPVSRREFWDLLAGIAAQGVTIVTATPYLDEAERCHRLALIYEGEIQQLGTLGELQRNLGLHRLELRATPLTAAEKLLRNQAPETVIDVQSFGDRLDILTPDVDQARRDITQTLAAANIQVQSLEANEPTLENVFVNHLRQQGADPVYKSFPYYRKRGNANPKAPKLAISAQQLQKTFGEFQAVKNVTFDVHYGEIYGLLGANGAGKTTTIKMICGLLPPTAGLIQLAGESENLHRSEVRSRLGYMSQKFTLYDDLSIQQNLEFYCGVYGIPRKLRREKIAWVLETCGLLGREKITTGSLPGGWKQRVAFGASVMHEPDILFLDEPTSGVDPVARRQFWRLIRDFARQGTAILVTTHYLEEAENCNRMAFMVAGEIVAQGSPTEIKAAQPGQLIEFCTNQIQHSSDLLKEKLAHWRVSIFGDRLHLVLDNPAQDLNFVQQTLQQEGIEIYSQRTIPFTLEDSFIGTVQRAEDLR
>NZ_CP016477.1|WP_065710859.1|1850516_1851623_-|ABC-transporter-permease
MSLKRILSQAKKELAQFSRDRLTVALALVLPLGMLLIYGYAIRLETKNIPLSIQDFDNSPLSRSYVERLFATNQFIPTPLAGTSPLSSLDRGTAKATIVIPPTFAADVAAGNAKVQALIDGTDVNNARVIQNSVRAVTNFFIQTLPNAQRPEGIQARVRIWFNPGREEALYIVPGIFGVVFWVFPSMLAAIAVVREKEQGTAVQVYASDLSSTEWLLGKGLAYWLVAIAETIVVMTISFVLFHIRLQTSPLPLIIGTGIYLAAAVSFGLFIGARGGNQNAAVQGTAIAGFLTSFLLSGFIYRLENIPFPLSLISNIIPARYYILLTRDAFVRGSGWRSIWYVPIVVGIIGLILFKAATKIMKNMQISD
>NZ_CP016477.1|WP_065710858.1|1849375_1850506_-|ABC-transporter-permease
MKINLLQGFFDGRFWALTLKEIRQILKNRQSIFLLIFPPTIQLLVFGLALSPNVDHLSLGLIDYANSAQSREFVSALTENDIFQIESIPKNEAQLQEQVRNGKLTAGLIIPPNFDRDLNQGNSTEVQVFIDGVDANTAGITNGYINQIVNQYTRQKNPEFKMPPVETQSRFLYNPGLTSSWFFVPGVIGLVLTLTGSLISSVTVIREKDVGTLEQLLMTPASGWEILLAKIIPLFILLMGDVLIASAIGKFIFHLPFRGNFLIFYALSGLYVFVSIGLGILLATLSRTQQQVVLTSFFFNAPIIQLSGAIAPIESMPKFFQILSWFDPLRHYVAIARSLILKGVAIDSLWPNILALLGFAIILLSVSVHRFRAQLN
>NZ_CP016477.1|WP_065710857.1|1848519_1849425_+|hypothetical-protein
MSSLVPQLTADGSYTFFSEEFQEHFHSQVGAKREAEEKFLLPCRIAELAQQPQLRLLDVCYGLGHNTAAALTEIWRVNPHCQVTLFALEKDQAIALDSLQQNILAAYPKTVVSLLRELSENLQIETSLFKAQLLTGDARQTIQRVIQADFQADAIFLDPFSPPKCPQLWTMEFLNLVAQCLASDGYLATYSCAAAVRVALQAAGLQLGKTPGVGRKSPGTLARFIPENLTPLSQQEQEHLLTNAAIAYRDPTLRDDADTILQRRRDEQQSSQRESTSHWKKRWSALNSTAPENDAHSPTTK
>NZ_CP016477.1|WP_071925401.1|1847497_1848499_+|endolytic-transglycosylase-MltG
MGIAFWQSWAWWRWAIAPGENADQTVQLDIPVGTGAAQIGEDLTALGLIQSPKAWQIWVKWLRLTDRGGSLKAGTYQFPPNQDLPAIAQQIWSGDVVQTSVTIPEGWTIQQMANRFEALGFFPATEFIAATQTIPREQFPWLPADLTSLEGFLFPDTYFLDTAQPSPPAIIEQMLGQFEAVVLPLYEAETVPLDLSLAEWVTLASIVEKEAVIPEERPLIAGVFINRLEQGMRLETDPTVEYGLGIRQTKEQPLTLEQVRTPNPYNTYLNEGLPPGAIASPGLASFRATSNPEATDFLFFVANYDGTHVFSETLAEHEAATQRIRAAIDGETE
>NZ_CP016477.1|WP_065710865.1|1858202_1860041_+|protein-kinase
MILCLNPTCSQPRNPDQGKFCMACGQPLVLGDRYIVRQVLHQGTKGRTLLGIDRGTFPESYCILKQVFLTQSVQAQQFVEMFQENAARLKTLGDRPEFPTVLGLFLPEHWHQITIPPTLVFEKIAGESLRQRLDLMGPFSEAKLREFLQDILPLVQLIHDHGLIHRDLNPDNLLFTPAQHWAIVDFTAAKVTSKMASAEPGTLIGSGIYTAPEQLRGQSYPGSDLYSLGVICLELLTSIHPFDLYSVRENRWVWRDYLTIPISNNLGHLLDQMLAEAVGDRPQSAQAILDQLFPTARPVTPKPIPRVAPEPPQIISLIEPSPVPQWYCFRTFTGHHAYITALQFAPDGQFLASAAADQTIRLWDLDRRRESRCLRGHRGIISGLAFWGDRLISGSWDYTIRLWNWQQGEQTACLQKRSTWIQGLACWEKTGQLATLGADQEIVVWDLTTQKILYTFTVSGAQLIRASQTKNQLWLAQGNHLTCYEQSQSVQTLPEHQGDILDFQVSADGQFLISIATDRTLKIWPLASDYTPKILRPVIPFTQLAIAPNQRFFAGGDRQGNLSLWQLGQEQPFVELVAHSGEIKAIAIAPDSQIIATAAADKTIKLWRFGIQ
>NZ_CP016477.1|WP_065710866.1|1860079_1861174_+|redox-regulated-ATPase-YchF
MLRAGIVGLPNVGKSTLFNALCENAKADAANFPFCTIEPNVGVVAVPDGRLDVLADISKSAKIVPTRIEFVDIAGLVKGASQGEGLGNQFLANIREVDAIVHVVRCFDDDDIIHVSGSVDPIRDIEVISLELILADLAQVEKRLDRARKQAKSRAKEALLEVAVLEKILPVLEDGRPAREVELDEEEELAIKALGLLTRKPVIYATNVSEEDLADGNAWVEQVRELAQGENAQVVVVSAQVEAELVELDAAEKKDFLESLGVEEGGLQSLIRATYELLGLRTYFTTGPEETRAWTIHVGMKAPQAAGVIHTDFERGFIRAETVAYQDLVDCGAMPAAKEKGLVRAEGKEYLVQEGDVMLFRFNV
>NZ_CP016477.1|WP_065710867.1|1861178_1861955_+|hypothetical-protein
MVKVWGKVLVLGLLIWFLGWSPVWAESLGDRLDHYPQWQDLPSLNPVQTGKDLIYPDWFAGTWQVTSTLIDQVAPLAPDLVTPGFAANETLIGQPFVFRVRFQLQTNFLVKPLSLPRQTGAAIVADRAFNGAEIAQAYLGEKTVQKVEVDPQHPNRQLTILKGDRRLISTVTGRAQAQPKPDQFFSSELTQQQFQSSEQIYLNRVETTTDYQQLDSDHVTANQVTAIYLSPSDPDFFQAQNKPVALYHYHLDLTKISE
>NZ_CP016477.1|WP_065710868.1|1862026_1862890_+|shikimate-dehydrogenase
MKILGTTKLLGVIGDPVKHSFSPIMHNAAIAELGVDYVYLAFPVAGAALKTALDGFWAIDLQGFSITIPHKQSIMAHLEAIAPEAELVGAVNTVWRTATGWQGTNTDVAGFVAPLQTLERDWSNVTPVILGNGGAARAVVVGCHQLGCPQIHVLGRDPEKLAQFSESWQNTPLAGKVQTHLWGDRQRLIPQAQLLVNATPIGMSPQVDASPVSDELMANLPPGAIAYDLIYTPSPTQFLKQAQAQGAAIIDGSEMLVQQGAIALEKWLGQPVPVDTMRQALLNHLAR
>NZ_CP016477.1|WP_012307343.1|1863017_1863659_+|hypothetical-protein
MGLYKRVYRIQSISPSDLVLKQGIDKNTAIILAFVPTLAIILWPISDFLGYRYAVYLVGLFIYTFIFFPFYLMPYARYLKVDADANQIIYLEAYLIQLFKRGRPWFQFLPQPKVYALKIPQLKALHVTQYDTLRFLGKGEKILFPDFKFDNIYELTRTVVRIFPLLEAEVWVNPWEGNYGNPYTYLRRKLKGANIMFLTGSSGSELLGDDEQL
>NZ_CP016477.1|WP_012307344.1|1863670_1864306_-|tRNA-modification-protein-YrdC
MATFLPKSPQAIAPIIEQLDRGQVVVIHTDVVYLLIANALNPQATNQIHELKGWEPRKPLTLLLTPPKVPEYGILSAEAQTLVNQFPYPISVILPHRNNLAEGVTAGHSEVFVSCPDQFIYDLAAQAPFPIAAGTASLGSEMRANDAKTAEAFFGQQVSLIIDGGKAKERIRTTLIDCHLPLPTILNFGLVSFDDLREIIPHIELPSHLRK
>NZ_CP016477.1|WP_065710869.1|1864462_1865326_-|metal-ABC-transporter-permease
MSLVNWIIEPLQYGFLVKAIWVSAFVGLVCAVLSCYITLKGWSLMGDAVSHAVVPGVVVAYALNIPFAIGAFIFGFGATVAIGYVKSKTRLKEDAVIGVIFTGFFAFGLVLITKIPSNIDLFHILFGNVLGISNSDIVQTLIAGTLTLVVILIQRKDLLLFCFDPNHAKAIGLNTRLMYYTLLSVLALTIVTALQTAGIILVIAMLVTPGSIAYLLTDRFDHMLWISGASSIFSCVFGTYLSYHFDVSTGGAIVVLLTIVFVLAMFFAPKYGILSQGKSSIPLESSP
>NZ_CP016477.1|WP_065710870.1|1865322_1866123_-|metal-ABC-transporter-ATP-binding-protein
MTYPIPEIAVENISVTYSNTRLALYNTSCHVKPGTITALVGPNGCGKSTLFKSIMGFLKPTQGRVTIAGQSVQQAQKKQLMAYVPQADEVDWNFPVSVFDVVMMGRYGYMNLLRIPSQKDRRLVMESLERVDLVEFRHRQIGELSGGQKKRAFLARALAQEGKIILLDEPFTGVDIKTEKSIIDLLVQLRDEGHTILISTHDLASISTFCDRTILLNRTVLAEGYTADTFTEENLVMTFGGLPVTSLEKLSSHYQQQPNSLEEVDQ
>NZ_CP016477.1|WP_065710871.1|1866177_1867155_-|metal-ABC-transporter-substrate-binding-protein
MIRINLPRQTLSLVGIVCGIWLVGCTQQAAPSVNSDVSTNNETTVNDTDGRKKVLTTFTVIADIAQNVAGDKLIVESITRIGAEIHGYEPTPSDLVRAQDADLLLYNGMNLERWFEQFLGNLNDVPAVIVTEGIEPIPIAEGPYTDKPNPHAWMSPKNALVYVENIRQAFVALDPDNAATYNANAAAYSAELEAIAAEFEADLDLVPAAQRFLVSCEGAFSYLAQDYGLEEIYIWPINAEQQFTPKQVQSVITQVEANDVPTIFCESTVSDEGQKEVAKATGARFGGNLYVDSLSTPDGPVPTFLDLLEYDVRTIANGLLAGTAQ
>NZ_CP016477.1|WP_084448979.1|1867333_1867813_+|tetratricopeptide-repeat-protein
MLNVVFAMVSEPQFPVVSEVVPPLAQSLELPPTAAGKAAYQSGVEFHELADFDQAIAAYQRAIAVDPNFVDPYINLSLIYISMGQLDDAEALLQTVLSLPDHPEEPASIHALAHYNLGIIYSRQGDSIQALSQVNQALAIAPNFAQAQTFYQQLQTAPE

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Crispr_ID: NZ_CP016477_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP016477_3

2988049-2988141

Orphan

Consensus_repeat	Method
CTCTAGCTCCCCTCATAGGGGAGAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP016477_3

>merge|NZ_CP016477|3|2988049-2988141|CRISPRCasFinder
CTCTAGCTCCCCTCATAGGGGAGAATGGCACCCTCCGGCCTGGCGGCCACCTCCCTCAAGGGACACCCCTCTAGATCCCCTCATAGGGGAGAA

>NZ_CP016477|3|3|2988049-2988141|CRISPRCasFinder
CTCTAGCTCCCCTCATAGGGGAGAA	TGGCACCCTCCGGCCTGGCGGCCACCTCCCTCAAGGGACACCC
CTCTAGATCCCCTCATAGGGGAGAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP016477.1\|WP_065711531.1\|2992063_2992699_-\|prepilin-type-N-terminal-cleavage/methylation-domain-containing-protein	unknown	unknown	gnl\|CDD\|374761
NZ_CP016477.1\|WP_030007672.1\|2995943_2996897_+\|ribonuclease-Z	unknown	unknown	gnl\|CDD\|274246
NZ_CP016477.1\|WP_065711524.1\|2971229_2971667_-\|peptidase	unknown	unknown	gnl\|CDD\|367843
NZ_CP016477.1\|WP_065711533.1\|2993818_2994220_+\|endonuclease-domain-containing-protein	unknown	unknown	gnl\|CDD\|238509
NZ_CP016477.1\|WP_065711525.1\|2977287_2979039_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224055
NZ_CP016477.1\|WP_065711743.1\|2983685_2984468_+\|photosystem-II-S4-domain-protein	unknown	unknown	gnl\|CDD\|132113
NZ_CP016477.1\|WP_065711527.1\|2981421_2981766_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP016477.1\|WP_065711534.1\|2994401_2995601_+\|argininosuccinate-synthase	unknown	unknown	gnl\|CDD\|234785
NZ_CP016477.1\|WP_065711530.1\|2988264_2990361_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP016477.1\|WP_065711526.1\|2980463_2981381_-\|histone-deacetylase	unknown	unknown	gnl\|CDD\|212518
NZ_CP016477.1\|WP_065711536.1\|2999448_3000834_+\|TldD/PmbA-family-protein	unknown	unknown	gnl\|CDD\|223389
NZ_CP016477.1\|WP_157094642.1\|2997425_2998139_-\|beta-carotene-ketolase	unknown	unknown	gnl\|CDD\|239590
NZ_CP016477.1\|WP_084449051.1\|2992887_2993469_-\|prepilin-type-N-terminal-cleavage/methylation-domain-containing-protein	unknown	unknown	gnl\|CDD\|374761
NZ_CP016477.1\|WP_065711741.1\|2979330_2980470_+\|anhydro-N-acetylmuramic-acid-kinase	unknown	unknown	gnl\|CDD\|236579
NZ_CP016477.1\|WP_065711528.1\|2984464_2985898_-\|deoxyribodipyrimidine-photolyase	unknown	unknown	gnl\|CDD\|274644
NZ_CP016477.1\|WP_012308397.1\|2998250_2999213_-\|carotenoid-binding-protein	unknown	unknown	gnl\|CDD\|370323
NZ_CP016477.1\|WP_065711742.1\|2981886_2983500_-\|signal-recognition-particle-docking-protein-FtsY	unknown	unknown	gnl\|CDD\|236686
NZ_CP016477.1\|WP_065711529.1\|2986011_2987787_-\|biosynthetic-type-acetolactate-synthase-large-subunit	unknown	unknown	gnl\|CDD\|236014
NZ_CP016477.1\|WP_065711523.1\|2970461_2971250_+\|adenosylcobinamide-GDP-ribazoletransferase	unknown	unknown	gnl\|CDD\|234697
NZ_CP016477.1\|WP_083993550.1\|2996888_2997224_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|375502

Protein	Function_ID	Function_description	E-value
NZ_CP016477.1\|WP_030007672.1\|2995943_2996897_+\|ribonuclease-Z	gnl\|CDD\|274246	TIGR02651, Ribonuclease_Z, ribonuclease Z. Processing of the 3-prime end of tRNA precursors may be the result of endonuclease or exonuclease activity, and differs in different species. Member of this family are ribonuclease Z, a tRNA 3-prime endonuclease that processes tRNAs to prepare for addition of CCA. In species where all tRNA sequences already have the CCA tail, such as E. coli, the need for such an enzyme is unclear. Protein similar to the E. coli enzyme, matched by TIGRFAMs model TIGR02649, are designated ribonuclease BN. [Transcription, RNA processing].	2.92436e-155
NZ_CP016477.1\|WP_065711524.1\|2971229_2971667_-\|peptidase	gnl\|CDD\|367843	pfam04151, PPC, Bacterial pre-peptidase C-terminal domain. This domain is normally found at the C-terminus of secreted bacterial peptidases. They are not present in the active peptidase. It is possible that they fulfill a similar role to the PKD (pfam00801) domain, which also are found in this context. Visual analysis suggests that PKD and PPC are distantly related (personal obs:Bateman A, Yeats C).	1.43474e-05
NZ_CP016477.1\|WP_065711533.1\|2993818_2994220_+\|endonuclease-domain-containing-protein	gnl\|CDD\|238509	cd01038, Endonuclease_DUF559, Domain of unknown function, appears to be related to a diverse group of endonucleases.	4.96577e-31
NZ_CP016477.1\|WP_065711525.1\|2977287_2979039_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224055	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms].	2.61495e-150
NZ_CP016477.1\|WP_065711743.1\|2983685_2984468_+\|photosystem-II-S4-domain-protein	gnl\|CDD\|132113	TIGR03069, RNA-binding_S4_domain-containing_protein, photosystem II S4 domain protein. Members of this protein family are about 265 residues long and each contains an S4 RNA-binding domain of about 48 residues. The member from the Cyanobacterium, Synechocystis sp. PCC 6803, was detected as a novel polypeptide in a highly purified preparation of active photosystem II (Kashino, et al., 2002). The phylogenetic distribution, including Cyanobacteria and Arabidopsis, supports a role in photosystem II, although the high bit score cutoffs for this model reflect similar sequences in non-photosynthetic organisms such as Carboxydothermus hydrogenoformans, a Gram-positive bacterium. [Energy metabolism, Photosynthesis].	1.47867e-134
NZ_CP016477.1\|WP_065711534.1\|2994401_2995601_+\|argininosuccinate-synthase	gnl\|CDD\|234785	PRK00509, PRK00509, argininosuccinate synthase; Provisional.	0
NZ_CP016477.1\|WP_065711523.1\|2970461_2971250_+\|adenosylcobinamide-GDP-ribazoletransferase	gnl\|CDD\|234697	PRK00235, cobS, cobalamin synthase; Reviewed.	8.18016e-66
NZ_CP016477.1\|WP_065711526.1\|2980463_2981381_-\|histone-deacetylase	gnl\|CDD\|212518	cd09992, HDAC_classII, Histone deacetylases and histone-like deacetylases, classII. Class II histone deacetylases are Zn-dependent enzymes that catalyze hydrolysis of N(6)-acetyl-lysine residues of histones (EC 3.5.1.98) and possibly other proteins to yield deacetylated histones/other proteins. This group includes animal HDAC4,5,6,7,8,9,10, fungal HOS3 and HDA1, plant HDA5 and HDA15 as well as other eukaryotes, archaeal and bacterial histone-like deacetylases. Eukaryotic deacetylases mostly use histones (H2, H3, H4) as substrates for deacetylation; however, non-histone substrates are known (for example, tubulin). Substrates for prokaryotic histone-like deacetylases are not known. Histone acetylation/deacetylation process is important for mediation of transcriptional regulation of many genes. Histone deacetylases usually act via association with DNA binding proteins to target specific chromatin regions. Interaction partners of class II deacetylases include 14-3-3 proteins, MEF2 family of transcriptional factors, CtBP, calmodulin (CaM), SMRT, N-CoR, BCL6, HP1alpha and SUMO. Histone deacetylases play a role in the regulation of cell cycle, cell differentiation and survival. Class II mammalian HDACs are differentially inhibited by structurally diverse compounds with known antitumor activities, thus presenting them as potential drug targets for human diseases resulting from aberrant acetylation.	6.92556e-131
NZ_CP016477.1\|WP_065711536.1\|2999448_3000834_+\|TldD/PmbA-family-protein	gnl\|CDD\|223389	COG0312, TldD, Predicted Zn-dependent proteases and their inactivated homologs [General function prediction only].	5.4753e-138
NZ_CP016477.1\|WP_157094642.1\|2997425_2998139_-\|beta-carotene-ketolase	gnl\|CDD\|239590	cd03513, CrtW_beta-carotene-ketolase, Beta-carotene ketolase/oxygenase (CrtW, also known as CrtO), the carotenoid astaxanthin biosynthetic enzyme, initially catalyzes the addition of two keto groups to carbons C4 and C4' of beta-carotene. Carotenoids are important natural pigments produced by many microorganisms and plants. Astaxanthin is reported to be an antioxidant, an anti-cancer agent, and an immune system stimulant. A number of bacteria and green algae can convert beta-carotene into astaxanthin by using several ketocarotenoids as intermediates and CrtW and a beta-carotene hydroxylase (CrtZ). CrtW initially converts beta-carotene to canthaxanthin via echinenone, and CrtZ initially mediates the conversion of beta-carotene to zeaxanthin via beta-cryptoxanthin. After a few more intermediates are formed, CrtW and CrtZ act in combination to produce astaxanthin. Sequences of this domain family appear to be structurally related to membrane fatty acid desaturases and alkane hydroxylases. They all share in common extensive hydrophobic regions that are capable of spanning the membrane bilayer at least twice. Comparison of these sequences also reveals three regions of conserved histidine cluster motifs that contain eight histidine residues: HXXXH, HXXHH, and HXXHH. These histidine residues are reported to be catalytically essential and proposed to be the ligands for the iron atoms contained within homologs, stearoyl CoA desaturase and alkane hydroxylase.	7.15101e-64
NZ_CP016477.1\|WP_084449051.1\|2992887_2993469_-\|prepilin-type-N-terminal-cleavage/methylation-domain-containing-protein	gnl\|CDD\|374761	pfam16734, Pilin_GH, Type IV pilin-like G and H, putative. Pilin_GH is a family from Cyanobacteria. All the proteins are putatively annotated as being general secretion pathway proteins G and H, and are likely to be pilins of the type IV secretory pathway.	4.52313e-21
NZ_CP016477.1\|WP_065711741.1\|2979330_2980470_+\|anhydro-N-acetylmuramic-acid-kinase	gnl\|CDD\|236579	PRK09585, anmK, anhydro-N-acetylmuramic acid kinase; Reviewed.	2.36112e-175
NZ_CP016477.1\|WP_065711528.1\|2984464_2985898_-\|deoxyribodipyrimidine-photolyase	gnl\|CDD\|274644	TIGR03556, photolyase_8HDF, deoxyribodipyrimidine photo-lyase, 8-HDF type. This model describes a narrow clade of cyanobacterial deoxyribodipyrimidine photo-lyase. This group, in contrast to several closely related proteins, uses a chromophore that, in other lineages is modified further to become coenzyme F420. This chromophore is called 8-HDF in most articles on the DNA photolyase and FO in most literature on coenzyme F420. [DNA metabolism, DNA replication, recombination, and repair].	0
NZ_CP016477.1\|WP_012308397.1\|2998250_2999213_-\|carotenoid-binding-protein	gnl\|CDD\|370323	pfam09150, Carot_N, Orange carotenoid protein, N-terminal. Members of this family adopt an alpha-helical structure consisting of two four-helix bundles. They are predominantly found in prokaryotic orange carotenoid protein, and carotenoid binding proteins.	1.66665e-93
NZ_CP016477.1\|WP_065711742.1\|2981886_2983500_-\|signal-recognition-particle-docking-protein-FtsY	gnl\|CDD\|236686	PRK10416, PRK10416, signal recognition particle-docking protein FtsY; Provisional.	4.42729e-160
NZ_CP016477.1\|WP_065711529.1\|2986011_2987787_-\|biosynthetic-type-acetolactate-synthase-large-subunit	gnl\|CDD\|236014	PRK07418, PRK07418, acetolactate synthase large subunit.	0
NZ_CP016477.1\|WP_065711531.1\|2992063_2992699_-\|prepilin-type-N-terminal-cleavage/methylation-domain-containing-protein	gnl\|CDD\|374761	pfam16734, Pilin_GH, Type IV pilin-like G and H, putative. Pilin_GH is a family from Cyanobacteria. All the proteins are putatively annotated as being general secretion pathway proteins G and H, and are likely to be pilins of the type IV secretory pathway.	2.13625e-18
NZ_CP016477.1\|WP_083993550.1\|2996888_2997224_-\|hypothetical-protein	gnl\|CDD\|375502	pfam18032, FRP, Photoprotection regulator fluorescence recovery protein. This family includes fluorescence recovery protein (FRP) domain, which is found in Synechocystis sp. PCC 6803 substr. Kazusa. FRP causes the dissociation of the orange carotenoid protein (OCP) from the phycobilisomes by interacting with the C-terminal domain of OCP, accelerating the conversion of the active red OCP to the inactive orange form. A patch of residues (W50, D54, H53, and R60), contributed by both chains of the FRP dimer cause the acceleration of the OCPr to OCPo conversion. Mutation of the absolutely conserved amino acids (R60) affect the activity of FRP.	7.23007e-48

>NZ_CP016477.1|WP_065711529.1|2986011_2987787_-|biosynthetic-type-acetolactate-synthase-large-subunit
MVSTTSPAATETAVRSEVRSGAYILIDSLKRHGVEYIFGYPGGAILPIYDALHPVEERGEIKHILVRHEQGASHAADGYARATGKVGVCFGTSGPGATNLVTGIATAHMDSIPMVVITGQVTRAAIGTDAFQETDIFGITLPVVKHSYVVRDPKDMARIVAEAFYIASTGRPGPVLVDVPKDVGLELCEYIPVEPGDVDIPGYKPRTEGDTSKIGEAVRLISESRKPLLYVGGGAITSGAHAEIKELAEQFQIPVTTTLMGLGAFDEHNPLSVGMLGMHGSAYANFAVSECDLLIAVGARFDDRVTGKLDEFASEAKVIHIDIDPAEVGKNRLPEVAIVGDVRHVLIEMLQQLGGKGLPLGNKPTEEWLDKIQGWKEKHPLVAPRFADSISPQSVIVELDRQAPHAYYTTDVGQHQMWAAQFLKNGPRRWISSAGLGTMGFGLPAALGAKVAIADEEVICISGDASFQMCLQELATLAQYQIKVKTVILNNGWQGMVRQWQQNFYGQRYSSSNMEAGMPNFELLAQAFGVKGMVVDHPDDLSGAIAEMLAHDGPVLLDVRVKKDENCYPMVIPGKSNAHMMGLQESSGKAE
>NZ_CP016477.1|WP_065711528.1|2984464_2985898_-|deoxyribodipyrimidine-photolyase
MAELVLHWHRRDLRLQDNVALAEARQQSAKVVGIFCLDPAILEKEDVAPARVKYLLACLTELAENYQKAGSQLLIFQGNPLEVLPKVAESLKVHTVYWNLDVEPYAQQRDHQMAIALREVGAKVETFWDQLLHAPGKVFTQSKKPYSVYSPFWKNWSQKPKAVPVKALKDCQGLSDAEQKLAKDLGAIALPSLADLGFSWDKPFTVPVGEAASLEQLDRFTENLIEKYDGDRNFPAIDGTSRLSAALKFGAIGIRTVWQATETALKHCRSKEAEAGVTTWQQELAWREFYQHCLFFFPELAQGPYREEFKDFPWENDEQKFQAWCTGQTGYPIIDAAMRQLNETGWMHNRCRMIVASFLTKDLIIDWRWGEKYFMQTLVDGDLSANNGGWQWSASSGMDPKPLRIFNPYTQAQKFDPEADYIRHWLPELSGLDTQVLLTGQIPRLLCQQHDYPEPIVEHRVRQREFKRLYKLVKDKA
>NZ_CP016477.1|WP_065711743.1|2983685_2984468_+|photosystem-II-S4-domain-protein
MNLPKDDLLKGVENRAELSRLLDQADQAIRTWEIVQTDFLSPPVLYEALEIFGKLTEVQVIHGGGYPQAERQRLAIAREEIPLDASHVEIAALDIAGNFLFDTATHRDFLGSLLGTGLVRDKVGDILVLGDRGAQALVIPELVPFLETSLVQVRSVPVKTRPIPLEELKVRPPKKKELTTVEASLRLDAIGSAGLGMSRAKMAEAIASGNVRVNWKTITQSSYNVKAGDLISLRGKGRVEVGEINMTKKERYRVNLTRFV
>NZ_CP016477.1|WP_065711742.1|2981886_2983500_-|signal-recognition-particle-docking-protein-FtsY
MFDWFRRKTTDKSQDTSEPTVTEKQVPESPTEEAAAPEPETPSTPEIDYLNWAKSAYKNIQAKKGIETTETPQPEATEPQEPELESTPAETEPETPAPEPTAEAPETAPETIEAITPQPEAPAEAVSPEPDSEPTEVEAAATVAPVAPEPEPEVIAAEVESTPDSETVAEPEPETTPATPAWMQKSDGLEKLKETAIDTEGLEFDENFLWSAKVLADQGRDASDISLEEIEWLKKLRDGLGKTRRSLVNQLKAVVGQGPLNDEAVLEIESLLLQADVGIEATDYIIETLQERLRQEALPPEAAITYLKEILRDILDKPLAKLPSTEFAPEADKLNVWMLTGVNGAGKTTTIGKLAHLANQSGYRCVIAAADTFRAAAVEQVKVWGERTDTPVIANPGKNTDPAAVVFDGITAAQARQAQILLVDTAGRLQNKKNLMDELAKIRRIVDKKAPDAQVESLLVLDATLGQNGLRQAQVFSEAAKLSGVVLTKLDGTARGGVALAVSQQLGLPIRFIGAGEGIEDLRPFSSYEFVEALLDG
>NZ_CP016477.1|WP_065711527.1|2981421_2981766_+|hypothetical-protein
MKFLGKLIGLGLILLGIYFLGKNIFFTTGGYRYSFWRGISADLAVMTLAGGVVSLFTLPENNRTLGWILIGASILLIFAGGRAVLTPVSLWQLFISLASMTSGYQLLRTGRINL
>NZ_CP016477.1|WP_065711526.1|2980463_2981381_-|histone-deacetylase
MIHLIYSDQFLDHDTGRSHPESPRRLTAIAQALRTVSWANQIQWHEPTAITFRDPLPWVRQLHDDYYLKELQKLAESGGGYWDPDTPVSPQSFNVALLAVNVCLDGVDLAFTTKEPVFALVRPPGHHATRSTGMGFCLLGNVAIAAHYALGLAGVQKVAILDWDVHHGNGTEYLVEENPQIVYCSLHQDPAYPGTGQAHHHGRHQNILNIPLKPGADRRIYTQKFQDVVLPYLQKFQPDLLIVSAGYDATAKDPLAGMNLQPQDYKTFSEFCQQLPCPMMFALEGGYHLQTLAESVVATLEPFVQ
>NZ_CP016477.1|WP_065711741.1|2979330_2980470_+|anhydro-N-acetylmuramic-acid-kinase
MRVIGLMSGTSVDGIDAALVEIQGEADAIEIELLGFTTYSYAPPLREKILAVCAGEKFSAFEFAALDDEIAHSFATAARQLQERYGKAELIGSHGQTIFHRPPNGNLGLSWQLGRGEAIAQQTKIKTVSNFRRADLAAGGQGAPLVPKVDAYLLADSTKHRCIQNLGGIGNVTYLPPKNQADWENYVIGWDTGPGNVLLDLAIQKLTNGAQAYDQDGIWASQGTPHLGLVERWLADPFIEQLPPKSTGREYFGVDFLEQCWRDAQDFQLTEADWLASLTEFTALTVQQNYELFLPQLPDEIFLCGGGCRNSYLRERLQAAFGNQIPVRSTDNLGLNHDAKEAIAFAVLAYWRVQEFPGNLPKVTGAQCPALLGEIHCPY
>NZ_CP016477.1|WP_065711525.1|2977287_2979039_-|ABC-transporter-ATP-binding-protein
MAAPSRLRRLLAYLKPYQRDIWLGIGALILVNGLGVYLPIILSNTVDSLQTDIGLGNLTRAVLLMLLLASVMWGIRMLSRVAIFGVGRQVEFDLKQKIFQHLLTLEPAYFASQSSGDLINRATSDVDNVRRLLGFSVLSLANTVFAYAMTLPVMLSLHGKLSVMAIAVYPAMLLTVQLFSGRLRDEQKEVQEELSELSQLIQEDMSGISLIKIYAQEANERQAFDKQNQKLLQANLGLARIRNLLFPIIEGISYISLLILLIFGTRAITADELTVGNFIALILLVERLVVPTALLGFTITSYQRGEVSIDRIEAILDNQPLIQDRTTAHPLDRHQVEGQIIAKHLSFTYPGDNRPALDDLNFTINPGEIIAIVGSIGAGKSTLANALPRLIDIEPGQLFLDGQDLTDIRLQDLRQAIAYVPQESFLFSSQIRDNIAYGLPGSDQPEIESSAQQAQIHHEILNFPRQYNTLVGERGITLSGGQRQRSSLARAFMIDAPVLILDDALSSVDNKTATEILDYLSRSPQNKTVIFITHQLSAAAKGDRIFVMDHGKIVQTGIHEELINQDGLYKQLWEQNQLAEILT
>NZ_CP016477.1|WP_065711524.1|2971229_2971667_-|peptidase
MNRIYWGCIFGFFSVLGLANQAIANEMMYRPLGIRSGQEINQRLSDQDIPTGEGGFARDYVITLQEGDQVAIDLLSDDFDTIVLLLAADGSTIAENDDAADGSTNSLLFVRINETGRYIVRVRAFGETGNGDFSLKVTRLQPIRE
>NZ_CP016477.1|WP_065711523.1|2970461_2971250_+|adenosylcobinamide-GDP-ribazoletransferase
MVRFLSGLLQLWRSLLGAILFYTLLPLPKGVQPSFIRIARWCPWVGLIIGGILLGSFWGLESLKVPTLLRSAILVAFWLGLTGGLHLDGAMDAADGLAVTEPKRRLAVMADSVSGAFGVMIGILILLLKVAALEGLGLESWYFFVLIPAWGRWSQVVAIAFYPYLKAEGKGAFHKQQFQLYPDLCWSICPMLLFVFLSYFFLPISQWLSVILSNLWFMAVAIAVSTWFGHKFQGHTGDTYGATVEWTEVACLVSIVLLANRL
>NZ_CP016477.1|WP_065711530.1|2988264_2990361_-|hypothetical-protein
MGAIWLRGQSRSGKTTALVARLKAWVAGQDPQAVLVPGLLVLAANNQNQRLLADLIHQEIRGSYPFVSKTPVAFMADEVELFFPLICEQLAIAPPFPLRLRPEMEQKLARELWADTLATWELLPNERFQNRLVRRLLDILLLAGAAGIALEEIPQRLIAGQLSLLTGTVAIGAETNLQEFTETAGKLIQQWRDWCLGRGFLTYGIIYNLYGQYLLKNEQYQASLGQRFGAIFADDGQDYPAIAKDLADILLNQGCTGVFTENPVGRIRLGLSGDPDYWSQLAQRCKVIHLERPAGLGATLTAQIQKTVTQPQFGGQLPATIQSIQTISRAQLLTRVGEQIQFLVKDQGIAPADIAIIAPGLDEVARYTLMESLAVAEIPLEPLREQRPIASSPWGRSLLTLLALIYPGSGRLIQSQAVAEMLMMLSQTASEKPLIDPVRAGLLVDYCFQPDPERPQLLPATTMPRGDRLGYQTTQAYEAIRQWIEQTQATHQITPQGILQTLNQAIQTFYLQKLAPSYGQLATLRELSETAQHFWQCGDRIGSQDTTTAQLADLLQLIQAETITANPRPQYNFNHQPPNSITLVTIFQYRSARRHHPYQFWLDAGSRLWEKGGAATLFGYGVFQRNWQGEPWSLALEQQGDRQRLQDIIQDLLARADTQIYLCHSDFGTNGSEQLGPLYPLIQATQECFQSSLEGGGR
>NZ_CP016477.1|WP_065711531.1|2992063_2992699_-|prepilin-type-N-terminal-cleavage/methylation-domain-containing-protein
MVDKFNHMHTKKAQDKKLNNLNYIQGLTLIELLISILIVAILALIAWPAYLGFSAKARQTEARNVLGIVNRSQLGFYQENSRFADSISELIFGIRVVSDNYSYTNVYSGGTPGLTENTAIPYATYLFANPQDPLAVKNYAGGVVLYVNNGVVTLKSIVCEEQSTAANITLEVIDGSGSFSTGGMQLNPDAITDADAVRCDGTHYKTVLTDR
>NZ_CP016477.1|WP_084449051.1|2992887_2993469_-|prepilin-type-N-terminal-cleavage/methylation-domain-containing-protein
MKNFTFKLLQQLNKKKADKGFTLIELLVVIIIIGILSAIALPAFLNQAAKARQSEAKQALASLNKAQQAAYLEDQTFATNIAALGLGLANETENYSYGDAAAQNNGSFSSPANSNATMFATAADAQAVKDYLGAAAVFTENGNTTTTTSICEEVDPTLVPGLPAASFSTTGSAEGAITCPNDGTTSIELGDSN
>NZ_CP016477.1|WP_065711533.1|2993818_2994220_+|endonuclease-domain-containing-protein
MRRKILPYNKHLVGRARQLRKTMTKGEIILWQHLRKKQILGVSFLRQRPIDQFIVDFYCKDWMLAIEIDGSSHDSLAAQERDAYRQAKLEALGVSFLRFSEYDAQNHPEAIAETIKTWLLTHPQKKVLPSQGS
>NZ_CP016477.1|WP_065711534.1|2994401_2995601_+|argininosuccinate-synthase
MGRAEKVVLAYSGGVDTSVCIPYLMHEWGVKEVITLAADLGQGEELGPIKQKALNSGAVVSLVEDGREEFITDYAFPAIKANALYENRYPLATALARPLIAKMLVRAAEKYGADAVAHGCTAKGNDQVRFDLGILAQNPEIKVLAPAREWGMSREEAITYGEQYGLTFPVKKSSPFSIDKNLLGRSIEAGPLEDPMCEPPEEVFEMVKAISDTPDEPEYLEISFEKGVPVTVNGEALGPVALISKLNEIVGNHGIGRIDMIENRVVGIKSREIYESPAMCVLVDAHRDLESLTLTADVTQYKRGMEQTYSELIYRGLWFSPLKQAVDAFIEQTQERVTGVVRLKLHKGTARIVGRRSEKSIYTPDLATYGADDKFNHESAEGFIYIWGLPTRVWAQANK
>NZ_CP016477.1|WP_030007672.1|2995943_2996897_+|ribonuclease-Z
MEITFLGTSSGVPTRARNVSSVALRLPQRAEAWLFDCGEGTQHQLLRSDLRSSQISRIFITHMHGDHIFGLMGLIASMGLAGTGHPLEIYGPPGLEEYLRACEKYSYMRIGDRLRVHLVKPGLVFEDKEFQVTCLPLKHRVTAFGYRVTEKDRPGRFNLAKAQKLGIPPGPIYGDLKKGKVVTLDDGRKINGSDLCGQPEIGRKMVYCTDTVFCEAAVELAQDADVLIHEATFAHKDAEMAFDRLHSTSTMAAQVALLAQVKQLIMTHFSPRYMPGNELTLDDLLAEARAIFPNTIMAKDFLNYAIPRRKALAQSLH
>NZ_CP016477.1|WP_083993550.1|2996888_2997224_-|hypothetical-protein
MLTMPTANTQWSLQEKTIAKEAFELSYRREIAAVMAEAKRQATLAADPADLWQLNDFLSARRHYLDGKYDFSPESLVFTFAQLIKEGWLELQELDGLAADKLSKIRILTLM
>NZ_CP016477.1|WP_157094642.1|2997425_2998139_-|beta-carotene-ketolase
MRQEEGLGLLWAIAIFSAWLGSAVYWLSHPLMGLSWPGIVAGIFVRTFFHTGLFILAHDAMHGNLLPSSPRWNHRLGRWGVSLYACLSYKDCIRNHAKHHRHPAQPGDPDFHNGRHRHPLLWYWHFMGKYLAWRQFWGFVLIFGAIALPLNVLGHVPYENFFVFCLLPIFLSSWQLFFFGTYLPHRDRPSLPKRISKQSIGWRIWSFLSCYHFGTFHEEHHRHPHKPWFQLPDHGVS
>NZ_CP016477.1|WP_012308397.1|2998250_2999213_-|carotenoid-binding-protein
MPYTLDAARNIFPSTLTADVVPATSARFSQLSAEDQLALIWFAYLEMGKSITIAAPGAANMQFAESTLLQIKQLSFKDQAQVMCDLANRIDTPINRTYATWSVNIKLGFWYRLGEWMEEGSVAPIPAGYKLSANASAVLDTIRSLEPGQQITVLRNAVVDMGFDPAKMEGYQRVSEPVVVPTEIAQREKIEIEGVDNPTINQYMTNLNANDFPALISLFAEDGALQPPFQRPIVGKDAVLRFFQEECQNLKLNPKKGVVEPTDDGYTQIKVTGTCETPWFGAAVGMNVAWRFLLNPEGKIFFVAVDLLASAKELLNLVRK
>NZ_CP016477.1|WP_065711536.1|2999448_3000834_+|TldD/PmbA-family-protein
MEKIVAGYKDQLTDLIQRYKNQVDFLAIRLEQSAGSSIVLRSNKIETLSESTSLGGQVRVCHKGGWGFAAFNNLENLQLRIEEAIAAAILIGDDETLLAPIDPIQAVCSLPLSGSDPRHIPLQRKKELCDRYSDLLLSQSGKITSTRVSYGDSTQHIILATSEGTLIEQSWVDLEMRFSATARDGETVQTGRETTGSRKAYEDLENLDEQVKGAAQRAVNSLTLPTAKGGTYTVVIDPILTGLFVHEAFGHLSEADMAYENPDLLETMSMGRQFGGEDLQIFDGAAPVGHRGSYRYDDEGVPATTTQLIQDGKLVGRLHSRETAGKLDEKPTGNARCLNYHYPPIVRMTNTWIERGKTPVADLPTDIKEGVYAKNWLGGMTNGEMFTFSAGEAWMIRDGKIAEPVKDVTLSGNVFKTLKNIEAIADDFYWDESGGCGKGGQSGLPVGCGGPSLRIRDVVVG

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP016477_2	2.1\|1857645\|29\|NZ_CP016477\|CRISPRCasFinder	1857645-1857673	29	NZ_CP029362	Streptomyces globisporus strain TFH56 plasmid pTFSG1, complete sequence	27497-27525	7	0.759
NZ_CP016477_2	2.1\|1857645\|29\|NZ_CP016477\|CRISPRCasFinder	1857645-1857673	29	NZ_CP006990	Rhizobium sp. IE4771 plasmid pRetIE4771d, complete sequence	278155-278183	7	0.759
NZ_CP016477_2	2.1\|1857645\|29\|NZ_CP016477\|CRISPRCasFinder	1857645-1857673	29	NZ_CP013635	Rhizobium sp. N324 plasmid pRspN324e, complete sequence	364513-364541	7	0.759
NZ_CP016477_2	2.1\|1857645\|29\|NZ_CP016477\|CRISPRCasFinder	1857645-1857673	29	NZ_CP013526	Rhizobium phaseoli strain R744 plasmid pRphaR744d, complete sequence	503604-503632	7	0.759
NZ_CP016477_2	2.1\|1857645\|29\|NZ_CP016477\|CRISPRCasFinder	1857645-1857673	29	NZ_CP013589	Rhizobium phaseoli strain N161 plasmid pRphaN161d, complete sequence	502369-502397	7	0.759
NZ_CP016477_2	2.1\|1857645\|29\|NZ_CP016477\|CRISPRCasFinder	1857645-1857673	29	NZ_CP016287	Rhizobium leguminosarum strain Vaf10 plasmid unnamed1, complete sequence	670340-670368	7	0.759
NZ_CP016477_2	2.1\|1857645\|29\|NZ_CP016477\|CRISPRCasFinder	1857645-1857673	29	NZ_CP013579	Rhizobium phaseoli strain N671 plasmid pRphaN671e, complete sequence	499548-499576	7	0.759
NZ_CP016477_2	2.1\|1857645\|29\|NZ_CP016477\|CRISPRCasFinder	1857645-1857673	29	NZ_CP013531	Rhizobium phaseoli strain R723 plasmid pRphaR723d, complete sequence	529476-529504	7	0.759
NZ_CP016477_2	2.1\|1857645\|29\|NZ_CP016477\|CRISPRCasFinder	1857645-1857673	29	NZ_CP013541	Rhizobium phaseoli strain R630 plasmid pRphaR630d, complete sequence	516278-516306	7	0.759
NZ_CP016477_2	2.1\|1857645\|29\|NZ_CP016477\|CRISPRCasFinder	1857645-1857673	29	NZ_CP013546	Rhizobium phaseoli strain R620 plasmid pRphaR620d, complete sequence	513969-513997	7	0.759
NZ_CP016477_2	2.1\|1857645\|29\|NZ_CP016477\|CRISPRCasFinder	1857645-1857673	29	NZ_CP013584	Rhizobium phaseoli strain N261 plasmid pRphaN261d, complete sequence	529476-529504	7	0.759
NZ_CP016477_2	2.1\|1857645\|29\|NZ_CP016477\|CRISPRCasFinder	1857645-1857673	29	NZ_CP013573	Rhizobium phaseoli strain N771 plasmid pRphaN771e, complete sequence	499548-499576	7	0.759
NZ_CP016477_2	2.1\|1857645\|29\|NZ_CP016477\|CRISPRCasFinder	1857645-1857673	29	NZ_CP021127	Rhizobium sp. Kim5 plasmid pRetKim5c, complete sequence	264910-264938	7	0.759
NZ_CP016477_2	2.1\|1857645\|29\|NZ_CP016477\|CRISPRCasFinder	1857645-1857673	29	NZ_CP054022	Rhizobium sp. JKLM12A2 plasmid pPR12A201, complete sequence	497478-497506	7	0.759
NZ_CP016477_2	2.1\|1857645\|29\|NZ_CP016477\|CRISPRCasFinder	1857645-1857673	29	CP007644	Rhizobium etli bv. phaseoli str. IE4803 plasmid pRetIE4803c, complete sequence	277215-277243	7	0.759
NZ_CP016477_2	2.1\|1857645\|29\|NZ_CP016477\|CRISPRCasFinder	1857645-1857673	29	NC_010997	Rhizobium etli CIAT 652 plasmid pC, complete sequence	501607-501635	7	0.759
NZ_CP016477_2	2.1\|1857645\|29\|NZ_CP016477\|CRISPRCasFinder	1857645-1857673	29	NZ_CP054032	Rhizobium sp. JKLM13E plasmid pPR13E01, complete sequence	210846-210874	7	0.759
NZ_CP016477_2	2.1\|1857645\|29\|NZ_CP016477\|CRISPRCasFinder	1857645-1857673	29	NZ_CP022565	Rhizobium leguminosarum bv. viciae strain BIHB 1148 plasmid pSK01, complete sequence	791083-791111	7	0.759
NZ_CP016477_2	2.1\|1857645\|29\|NZ_CP016477\|CRISPRCasFinder	1857645-1857673	29	NZ_CP050092	Rhizobium leguminosarum bv. trifolii strain 22B plasmid pRL22b6, complete sequence	744565-744593	7	0.759
NZ_CP016477_2	2.1\|1857645\|29\|NZ_CP016477\|CRISPRCasFinder	1857645-1857673	29	NZ_CP050098	Rhizobium leguminosarum bv. trifolii strain 9B plasmid pRL9b4, complete sequence	827478-827506	7	0.759
NZ_CP016477_2	2.1\|1857645\|29\|NZ_CP016477\|CRISPRCasFinder	1857645-1857673	29	NZ_CP020900	Rhizobium phaseoli Brasil 5 strain Bra5 plasmid pRphaBra5d, complete sequence	1072859-1072887	7	0.759
NZ_CP016477_2	2.1\|1857645\|29\|NZ_CP016477\|CRISPRCasFinder	1857645-1857673	29	NZ_CP053440	Rhizobium leguminosarum bv. trifolii strain CC275e plasmid pRltCC275eF, complete sequence	898129-898157	7	0.759
NZ_CP016477_2	2.1\|1857645\|29\|NZ_CP016477\|CRISPRCasFinder	1857645-1857673	29	NZ_CP018229	Rhizobium leguminosarum strain Vaf-108 plasmid unnamed1, complete sequence	1144523-1144551	7	0.759
NZ_CP016477_2	2.1\|1857645\|29\|NZ_CP016477\|CRISPRCasFinder	1857645-1857673	29	NZ_CP013536	Rhizobium phaseoli strain R650 plasmid pRphaR650d, complete sequence	402045-402073	7	0.759
NZ_CP016477_2	2.1\|1857645\|29\|NZ_CP016477\|CRISPRCasFinder	1857645-1857673	29	NZ_CP013739	Streptomyces globisporus C-1027 plasmid SGLP1, complete sequence	93585-93613	7	0.759
NZ_CP016477_2	2.1\|1857645\|29\|NZ_CP016477\|CRISPRCasFinder	1857645-1857673	29	NZ_CP048281	Rhizobium leguminosarum bv. viciae 248 plasmid pRle248e, complete sequence	624480-624508	7	0.759

1. spacer 2.1|1857645|29|NZ_CP016477|CRISPRCasFinder matches to NZ_CP029362 (Streptomyces globisporus strain TFH56 plasmid pTFSG1, complete sequence) position: , mismatch: 7, identity: 0.759

gggcttttggcgattttctgccattcatc	CRISPR spacer
gggcttttgatgattttctgccaaaggac	Protospacer
*********..************   . *

2. spacer 2.1|1857645|29|NZ_CP016477|CRISPRCasFinder matches to NZ_CP006990 (Rhizobium sp. IE4771 plasmid pRetIE4771d, complete sequence) position: , mismatch: 7, identity: 0.759

gggcttttggcgattttctgccattcatc	CRISPR spacer
cgcagattggcgaatttctgccattcgtc	Protospacer
 *    ******* ************.**

3. spacer 2.1|1857645|29|NZ_CP016477|CRISPRCasFinder matches to NZ_CP013635 (Rhizobium sp. N324 plasmid pRspN324e, complete sequence) position: , mismatch: 7, identity: 0.759

gggcttttggcgattttctgccattcatc	CRISPR spacer
cgcagattggcgaatttctgccattcgtc	Protospacer
 *    ******* ************.**

4. spacer 2.1|1857645|29|NZ_CP016477|CRISPRCasFinder matches to NZ_CP013526 (Rhizobium phaseoli strain R744 plasmid pRphaR744d, complete sequence) position: , mismatch: 7, identity: 0.759

gggcttttggcgattttctgccattcatc	CRISPR spacer
cgcagattggcgaatttctgccattcgtc	Protospacer
 *    ******* ************.**

5. spacer 2.1|1857645|29|NZ_CP016477|CRISPRCasFinder matches to NZ_CP013589 (Rhizobium phaseoli strain N161 plasmid pRphaN161d, complete sequence) position: , mismatch: 7, identity: 0.759

gggcttttggcgattttctgccattcatc	CRISPR spacer
cgcaggttggcgaatttctgccattcgtc	Protospacer
 *    ******* ************.**

6. spacer 2.1|1857645|29|NZ_CP016477|CRISPRCasFinder matches to NZ_CP016287 (Rhizobium leguminosarum strain Vaf10 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.759

gggcttttggcgattttctgccattcatc	CRISPR spacer
cgcagattggcgaatttctgccattcgtc	Protospacer
 *    ******* ************.**

7. spacer 2.1|1857645|29|NZ_CP016477|CRISPRCasFinder matches to NZ_CP013579 (Rhizobium phaseoli strain N671 plasmid pRphaN671e, complete sequence) position: , mismatch: 7, identity: 0.759

gggcttttggcgattttctgccattcatc	CRISPR spacer
cgcagattggcgaatttctgccattcgtc	Protospacer
 *    ******* ************.**

8. spacer 2.1|1857645|29|NZ_CP016477|CRISPRCasFinder matches to NZ_CP013531 (Rhizobium phaseoli strain R723 plasmid pRphaR723d, complete sequence) position: , mismatch: 7, identity: 0.759

gggcttttggcgattttctgccattcatc	CRISPR spacer
cgcagattggcgaatttctgccattcgtc	Protospacer
 *    ******* ************.**

9. spacer 2.1|1857645|29|NZ_CP016477|CRISPRCasFinder matches to NZ_CP013541 (Rhizobium phaseoli strain R630 plasmid pRphaR630d, complete sequence) position: , mismatch: 7, identity: 0.759

gggcttttggcgattttctgccattcatc	CRISPR spacer
cgcagattggcgaatttctgccattcgtc	Protospacer
 *    ******* ************.**

10. spacer 2.1|1857645|29|NZ_CP016477|CRISPRCasFinder matches to NZ_CP013546 (Rhizobium phaseoli strain R620 plasmid pRphaR620d, complete sequence) position: , mismatch: 7, identity: 0.759

gggcttttggcgattttctgccattcatc	CRISPR spacer
cgcagattggcgaatttctgccattcgtc	Protospacer
 *    ******* ************.**

11. spacer 2.1|1857645|29|NZ_CP016477|CRISPRCasFinder matches to NZ_CP013584 (Rhizobium phaseoli strain N261 plasmid pRphaN261d, complete sequence) position: , mismatch: 7, identity: 0.759

gggcttttggcgattttctgccattcatc	CRISPR spacer
cgcagattggcgaatttctgccattcgtc	Protospacer
 *    ******* ************.**

12. spacer 2.1|1857645|29|NZ_CP016477|CRISPRCasFinder matches to NZ_CP013573 (Rhizobium phaseoli strain N771 plasmid pRphaN771e, complete sequence) position: , mismatch: 7, identity: 0.759

gggcttttggcgattttctgccattcatc	CRISPR spacer
cgcagattggcgaatttctgccattcgtc	Protospacer
 *    ******* ************.**

13. spacer 2.1|1857645|29|NZ_CP016477|CRISPRCasFinder matches to NZ_CP021127 (Rhizobium sp. Kim5 plasmid pRetKim5c, complete sequence) position: , mismatch: 7, identity: 0.759

gggcttttggcgattttctgccattcatc	CRISPR spacer
cgcagattggcgaatttctgccattcgtc	Protospacer
 *    ******* ************.**

14. spacer 2.1|1857645|29|NZ_CP016477|CRISPRCasFinder matches to NZ_CP054022 (Rhizobium sp. JKLM12A2 plasmid pPR12A201, complete sequence) position: , mismatch: 7, identity: 0.759

gggcttttggcgattttctgccattcatc	CRISPR spacer
cgcaggttggcgaatttctgccattcgtc	Protospacer
 *    ******* ************.**

15. spacer 2.1|1857645|29|NZ_CP016477|CRISPRCasFinder matches to CP007644 (Rhizobium etli bv. phaseoli str. IE4803 plasmid pRetIE4803c, complete sequence) position: , mismatch: 7, identity: 0.759

gggcttttggcgattttctgccattcatc	CRISPR spacer
cgcaggttggcgaatttctgccattcgtc	Protospacer
 *    ******* ************.**

16. spacer 2.1|1857645|29|NZ_CP016477|CRISPRCasFinder matches to NC_010997 (Rhizobium etli CIAT 652 plasmid pC, complete sequence) position: , mismatch: 7, identity: 0.759

gggcttttggcgattttctgccattcatc	CRISPR spacer
cgcagattggcgaatttctgccattcgtc	Protospacer
 *    ******* ************.**

17. spacer 2.1|1857645|29|NZ_CP016477|CRISPRCasFinder matches to NZ_CP054032 (Rhizobium sp. JKLM13E plasmid pPR13E01, complete sequence) position: , mismatch: 7, identity: 0.759

gggcttttggcgattttctgccattcatc	CRISPR spacer
cgcagattggcgaatttctgccattcgtc	Protospacer
 *    ******* ************.**

18. spacer 2.1|1857645|29|NZ_CP016477|CRISPRCasFinder matches to NZ_CP022565 (Rhizobium leguminosarum bv. viciae strain BIHB 1148 plasmid pSK01, complete sequence) position: , mismatch: 7, identity: 0.759

gggcttttggcgattttctgccattcatc	CRISPR spacer
cgcagattggcgaatttctgccattcgtc	Protospacer
 *    ******* ************.**

19. spacer 2.1|1857645|29|NZ_CP016477|CRISPRCasFinder matches to NZ_CP050092 (Rhizobium leguminosarum bv. trifolii strain 22B plasmid pRL22b6, complete sequence) position: , mismatch: 7, identity: 0.759

gggcttttggcgattttctgccattcatc	CRISPR spacer
cgcagattggcgaatttctgccattcgtc	Protospacer
 *    ******* ************.**

20. spacer 2.1|1857645|29|NZ_CP016477|CRISPRCasFinder matches to NZ_CP050098 (Rhizobium leguminosarum bv. trifolii strain 9B plasmid pRL9b4, complete sequence) position: , mismatch: 7, identity: 0.759

gggcttttggcgattttctgccattcatc	CRISPR spacer
cgcagattggcgaatttctgccattcgtc	Protospacer
 *    ******* ************.**

21. spacer 2.1|1857645|29|NZ_CP016477|CRISPRCasFinder matches to NZ_CP020900 (Rhizobium phaseoli Brasil 5 strain Bra5 plasmid pRphaBra5d, complete sequence) position: , mismatch: 7, identity: 0.759

gggcttttggcgattttctgccattcatc	CRISPR spacer
cgcagattggcgaatttctgccattcgtc	Protospacer
 *    ******* ************.**

22. spacer 2.1|1857645|29|NZ_CP016477|CRISPRCasFinder matches to NZ_CP053440 (Rhizobium leguminosarum bv. trifolii strain CC275e plasmid pRltCC275eF, complete sequence) position: , mismatch: 7, identity: 0.759

gggcttttggcgattttctgccattcatc	CRISPR spacer
cgcagattggcgaatttctgccattcgtc	Protospacer
 *    ******* ************.**

23. spacer 2.1|1857645|29|NZ_CP016477|CRISPRCasFinder matches to NZ_CP018229 (Rhizobium leguminosarum strain Vaf-108 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.759

gggcttttggcgattttctgccattcatc	CRISPR spacer
cgcagattggcgaatttctgccattcgtc	Protospacer
 *    ******* ************.**

24. spacer 2.1|1857645|29|NZ_CP016477|CRISPRCasFinder matches to NZ_CP013536 (Rhizobium phaseoli strain R650 plasmid pRphaR650d, complete sequence) position: , mismatch: 7, identity: 0.759

gggcttttggcgattttctgccattcatc	CRISPR spacer
cgcagattggcgaatttctgccattcgtc	Protospacer
 *    ******* ************.**

25. spacer 2.1|1857645|29|NZ_CP016477|CRISPRCasFinder matches to NZ_CP013739 (Streptomyces globisporus C-1027 plasmid SGLP1, complete sequence) position: , mismatch: 7, identity: 0.759

gggcttttggcgattttctgccattcatc	CRISPR spacer
gggcttttgatgattttctgccagaagac	Protospacer
*********..************   . *

26. spacer 2.1|1857645|29|NZ_CP016477|CRISPRCasFinder matches to NZ_CP048281 (Rhizobium leguminosarum bv. viciae 248 plasmid pRle248e, complete sequence) position: , mismatch: 7, identity: 0.759

gggcttttggcgattttctgccattcatc	CRISPR spacer
cgcagattggcgaatttctgccattcgtc	Protospacer
 *    ******* ************.**

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP016482

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP016477

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection