CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Target MGE spacer number	Prophage number
NZ_CP016485	Synechococcus sp. PCC 8807 plasmid unnamed2, complete sequence	0 crisprs	NA	0	0
NZ_CP016488	Synechococcus sp. PCC 8807 plasmid unnamed5, complete sequence	0 crisprs	NA	0	0
NZ_CP016483	Synechococcus sp. PCC 8807 chromosome, complete genome	3 crisprs	csa3,cas3,RT,DinG,cas14j	0	1
NZ_CP016489	Synechococcus sp. PCC 8807 plasmid unnamed6, complete sequence	2 crisprs	WYL,cas8b5,cas7,cas5,cas6,cas4,cas1,cas2	20	0
NZ_CP016484	Synechococcus sp. PCC 8807 plasmid unnamed1, complete sequence	0 crisprs	NA	0	0
NZ_CP016486	Synechococcus sp. PCC 8807 plasmid unnamed3, complete sequence	0 crisprs	NA	0	0
NZ_CP016487	Synechococcus sp. PCC 8807 plasmid unnamed4, complete sequence	0 crisprs	NA	0	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP016489_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP016489_1

32118-33523

Unclear

Consensus_repeat	Method
CTTTCTAACCACTAAATCCCGATCACGGGACTGAAAC	PILER-CR
CTTTCTAACCACTAAATCCCGATCACGGGACTGAAAC	CRISPRCasFinder
CTTTCTAACCACTAAATCCCGANCACGGGACTGAAAC	CRT

19 spacers

cas2,cas1,cas4,cas6,cas5,cas7,cas8b5,WYL

The CRISPR arrays of NZ_CP016489_1

>merge|NZ_CP016489|1|32118-33523|PILER-CR,CRISPRCasFinder,CRT
CTTTCTAACCACTAAATCCCGATCACGGGACTGAAACCTGCTAAGGCCGTCCTTTCCGCTGAAGGCAAAATCTTTCTAACCACTAAATCCCGATCACGGGACTGAAACGCCCTTTCTCGTATTGAAGCAACCTTCCCCAACAACCTTTCTAACCACTAAATCCCGATCACGGGACTGAAACGTGCGATCCGTTACCCAGTATTTGCGATTACCGCCCAACAACTTTCTAACCACTAAATCCCGATCACGGGACTGAAACAGAAACAGAGTTGAAGAGGGTCACAGAATTGAATCAAACTTTCTAACCACTAAATCCCGATCACGGGACTGAAACAATTCTTTCTCAATGCCCGCGACCAATCGAGCGACTTTCTAACCACTAAATCCCGATCACGGGACTGAAACAAAAGAACCCCGGATACTTGACTAAAATCAATTTGGCTTTCTAACCACTAAATCCCGATCACGGGACTGAAACTTCCCAAACCCAGACCCTAGCGTGGTTTTTCCCCAACTTTCTAACCACTAAATCCCGATCACGGGACTGAAACAAAAGCAGAAAATGCTTATCTCAAAGAGCAGCTTTACTTTCTAACCACTAAATCCCGATCACGGGACTGAAACAAGGGAAGATATTTCCAAACCACGGTCACGACTTTCTAACCACTAAATCCCGATCACGGGACTGAAACAACAGAGAAATCGGAGAATCCATTAAGCGATCCATCTTTCTAACCACTAAATCCCGATCACGGGACTGAAACATGAGGGCACCAACGTTACAGCCTCGGTTATTGACTTTCTAACCACTAAATCCCGATCACGGGACTGAAACATGAGGGCACCAACGTTACAGCCTCGGTTATTGACTTTCTAACCACTAAATCCCGATCACGGGACTGAAACTCCTGTTTTGCCTTCTTTGCCCTCAGAAGCTTCTGCTTTCTAACCACTAAATCCCGACCACGGGACTGAAACCAGCGTTGCCAGAATAGCAAAAGCATTGCCGGCTTTCCAACCACTAAATCCCGACCACGGGACTGAAACCAGCGAGGTTTGCCCTGTTTCCATCAAGTTGAAAACTTTCCAACCACTAAATCCCGACCACGGGACTGAAACTTGTTAATCATTGCTTTTGCCTGCGGGATGGCTTCTTTCCAACCACTAAATCCCGACCACGGGACTGAAACGTATTATTCACGGTTATGTTGGACTTATCAATAAAACTTTCCAACCACTAAATCCCGACCACGGGACTGAAACTTAGCAGGGAGCGAGTTCGACAACTACTTCCCTGACTTTCCAACCACTAAATCCCGACCACGGGACTGAAACAGACATTGACGCCAAAACCCAAAAGCCATTCCAACTTTCCAACCACTAAATCCCGACCACGGGACTGAAAC

>NZ_CP016489|1|1|32118-33523|PILER-CR
CTTTCTAACCACTAAATCCCGATCACGGGACTGAAAC	CTGCTAAGGCCGTCCTTTCCGCTGAAGGCAAAAT
CTTTCTAACCACTAAATCCCGATCACGGGACTGAAAC	GCCCTTTCTCGTATTGAAGCAACCTTCCCCAACAAC
CTTTCTAACCACTAAATCCCGATCACGGGACTGAAAC	GTGCGATCCGTTACCCAGTATTTGCGATTACCGCCCAACAA
CTTTCTAACCACTAAATCCCGATCACGGGACTGAAAC	AGAAACAGAGTTGAAGAGGGTCACAGAATTGAATCAAA
CTTTCTAACCACTAAATCCCGATCACGGGACTGAAAC	AATTCTTTCTCAATGCCCGCGACCAATCGAGCGA
CTTTCTAACCACTAAATCCCGATCACGGGACTGAAAC	AAAAGAACCCCGGATACTTGACTAAAATCAATTTGG
CTTTCTAACCACTAAATCCCGATCACGGGACTGAAAC	TTCCCAAACCCAGACCCTAGCGTGGTTTTTCCCCAA
CTTTCTAACCACTAAATCCCGATCACGGGACTGAAAC	AAAAGCAGAAAATGCTTATCTCAAAGAGCAGCTTTA
CTTTCTAACCACTAAATCCCGATCACGGGACTGAAAC	AAGGGAAGATATTTCCAAACCACGGTCACGA
CTTTCTAACCACTAAATCCCGATCACGGGACTGAAAC	AACAGAGAAATCGGAGAATCCATTAAGCGATCCAT
CTTTCTAACCACTAAATCCCGATCACGGGACTGAAAC	ATGAGGGCACCAACGTTACAGCCTCGGTTATTGA
CTTTCTAACCACTAAATCCCGATCACGGGACTGAAAC	ATGAGGGCACCAACGTTACAGCCTCGGTTATTGA
CTTTCTAACCACTAAATCCCGATCACGGGACTGAAAC	TCCTGTTTTGCCTTCTTTGCCCTCAGAAGCTTCTG
CTTTCTAACCACTAAATCCCGACCACGGGACTGAAAC	CAGCGTTGCCAGAATAGCAAAAGCATTGCCGG
CTTTCCAACCACTAAATCCCGACCACGGGACTGAAAC	CAGCGAGGTTTGCCCTGTTTCCATCAAGTTGAAAA
CTTTCCAACCACTAAATCCCGACCACGGGACTGAAAC	TTGTTAATCATTGCTTTTGCCTGCGGGATGGCTT
CTTTCCAACCACTAAATCCCGACCACGGGACTGAAAC	GTATTATTCACGGTTATGTTGGACTTATCAATAAAA
CTTTCCAACCACTAAATCCCGACCACGGGACTGAAAC	TTAGCAGGGAGCGAGTTCGACAACTACTTCCCTGA
CTTTCCAACCACTAAATCCCGACCACGGGACTGAAAC	AGACATTGACGCCAAAACCCAAAAGCCATTCCAA
CTTTCCAACCACTAAATCCCGACCACGGGACTGAAAC

>NZ_CP016489|1|1|32118-33523|CRISPRCasFinder
CTTTCTAACCACTAAATCCCGATCACGGGACTGAAAC	CTGCTAAGGCCGTCCTTTCCGCTGAAGGCAAAAT
CTTTCTAACCACTAAATCCCGATCACGGGACTGAAAC	GCCCTTTCTCGTATTGAAGCAACCTTCCCCAACAAC
CTTTCTAACCACTAAATCCCGATCACGGGACTGAAAC	GTGCGATCCGTTACCCAGTATTTGCGATTACCGCCCAACAA
CTTTCTAACCACTAAATCCCGATCACGGGACTGAAAC	AGAAACAGAGTTGAAGAGGGTCACAGAATTGAATCAAA
CTTTCTAACCACTAAATCCCGATCACGGGACTGAAAC	AATTCTTTCTCAATGCCCGCGACCAATCGAGCGA
CTTTCTAACCACTAAATCCCGATCACGGGACTGAAAC	AAAAGAACCCCGGATACTTGACTAAAATCAATTTGG
CTTTCTAACCACTAAATCCCGATCACGGGACTGAAAC	TTCCCAAACCCAGACCCTAGCGTGGTTTTTCCCCAA
CTTTCTAACCACTAAATCCCGATCACGGGACTGAAAC	AAAAGCAGAAAATGCTTATCTCAAAGAGCAGCTTTA
CTTTCTAACCACTAAATCCCGATCACGGGACTGAAAC	AAGGGAAGATATTTCCAAACCACGGTCACGA
CTTTCTAACCACTAAATCCCGATCACGGGACTGAAAC	AACAGAGAAATCGGAGAATCCATTAAGCGATCCAT
CTTTCTAACCACTAAATCCCGATCACGGGACTGAAAC	ATGAGGGCACCAACGTTACAGCCTCGGTTATTGA
CTTTCTAACCACTAAATCCCGATCACGGGACTGAAAC	ATGAGGGCACCAACGTTACAGCCTCGGTTATTGA
CTTTCTAACCACTAAATCCCGATCACGGGACTGAAAC	TCCTGTTTTGCCTTCTTTGCCCTCAGAAGCTTCTG
CTTTCTAACCACTAAATCCCGACCACGGGACTGAAAC	CAGCGTTGCCAGAATAGCAAAAGCATTGCCGG
CTTTCCAACCACTAAATCCCGACCACGGGACTGAAAC	CAGCGAGGTTTGCCCTGTTTCCATCAAGTTGAAAA
CTTTCCAACCACTAAATCCCGACCACGGGACTGAAAC	TTGTTAATCATTGCTTTTGCCTGCGGGATGGCTT
CTTTCCAACCACTAAATCCCGACCACGGGACTGAAAC	GTATTATTCACGGTTATGTTGGACTTATCAATAAAA
CTTTCCAACCACTAAATCCCGACCACGGGACTGAAAC	TTAGCAGGGAGCGAGTTCGACAACTACTTCCCTGA
CTTTCCAACCACTAAATCCCGACCACGGGACTGAAAC	AGACATTGACGCCAAAACCCAAAAGCCATTCCAA
CTTTCCAACCACTAAATCCCGACCACGGGACTGAAAC

>NZ_CP016489|1|1|32118-33523|CRT
CTTTCTAACCACTAAATCCCGATCACGGGACTGAAAC	CTGCTAAGGCCGTCCTTTCCGCTGAAGGCAAAAT
CTTTCTAACCACTAAATCCCGATCACGGGACTGAAAC	GCCCTTTCTCGTATTGAAGCAACCTTCCCCAACAAC
CTTTCTAACCACTAAATCCCGATCACGGGACTGAAAC	GTGCGATCCGTTACCCAGTATTTGCGATTACCGCCCAACAA
CTTTCTAACCACTAAATCCCGATCACGGGACTGAAAC	AGAAACAGAGTTGAAGAGGGTCACAGAATTGAATCAAA
CTTTCTAACCACTAAATCCCGATCACGGGACTGAAAC	AATTCTTTCTCAATGCCCGCGACCAATCGAGCGA
CTTTCTAACCACTAAATCCCGATCACGGGACTGAAAC	AAAAGAACCCCGGATACTTGACTAAAATCAATTTGG
CTTTCTAACCACTAAATCCCGATCACGGGACTGAAAC	TTCCCAAACCCAGACCCTAGCGTGGTTTTTCCCCAA
CTTTCTAACCACTAAATCCCGATCACGGGACTGAAAC	AAAAGCAGAAAATGCTTATCTCAAAGAGCAGCTTTA
CTTTCTAACCACTAAATCCCGATCACGGGACTGAAAC	AAGGGAAGATATTTCCAAACCACGGTCACGA
CTTTCTAACCACTAAATCCCGATCACGGGACTGAAAC	AACAGAGAAATCGGAGAATCCATTAAGCGATCCAT
CTTTCTAACCACTAAATCCCGATCACGGGACTGAAAC	ATGAGGGCACCAACGTTACAGCCTCGGTTATTGA
CTTTCTAACCACTAAATCCCGATCACGGGACTGAAAC	ATGAGGGCACCAACGTTACAGCCTCGGTTATTGA
CTTTCTAACCACTAAATCCCGATCACGGGACTGAAAC	TCCTGTTTTGCCTTCTTTGCCCTCAGAAGCTTCTG
CTTTCTAACCACTAAATCCCGACCACGGGACTGAAAC	CAGCGTTGCCAGAATAGCAAAAGCATTGCCGG
CTTTCCAACCACTAAATCCCGACCACGGGACTGAAAC	CAGCGAGGTTTGCCCTGTTTCCATCAAGTTGAAAA
CTTTCCAACCACTAAATCCCGACCACGGGACTGAAAC	TTGTTAATCATTGCTTTTGCCTGCGGGATGGCTT
CTTTCCAACCACTAAATCCCGACCACGGGACTGAAAC	GTATTATTCACGGTTATGTTGGACTTATCAATAAAA
CTTTCCAACCACTAAATCCCGACCACGGGACTGAAAC	TTAGCAGGGAGCGAGTTCGACAACTACTTCCCTGA
CTTTCCAACCACTAAATCCCGACCACGGGACTGAAAC	AGACATTGACGCCAAAACCCAAAAGCCATTCCAA
CTTTCCAACCACTAAATCCCGACCACGGGACTGAAAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP016489.1\|WP_083993600.1\|36862_37237_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP016489.1\|WP_083993592.1\|21155_21362_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP016489.1\|WP_065717513.1\|30057_30636_+\|CRISPR-associated-protein-Cas4	cas4	cd09637_cas4_CAS-I:CAS-II:CAS-V	gnl\|CDD\|273040
NZ_CP016489.1\|WP_065717591.1\|37968_38478_-\|DNA-binding-protein	unknown	unknown	unknown
NZ_CP016489.1\|WP_062437139.1\|25674_26499_+\|hypothetical-protein	cas5	cls000047_cas5_CAS-I-B	unknown
NZ_CP016489.1\|WP_012305531.1\|40516_41623_-\|sensor-histidine-kinase-KdpD	unknown	unknown	gnl\|CDD\|225115
NZ_CP016489.1\|WP_065717515.1\|35854_36841_+\|ParM/StbA-family-protein	unknown	unknown	gnl\|CDD\|212669
NZ_CP016489.1\|WP_065717509.1\|20658_21144_+\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|372305
NZ_CP016489.1\|WP_065717518.1\|39183_39429_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP016489.1\|WP_065717510.1\|21324_22188_-\|WYL-domain-containing-protein	WYL	pfam13280_WYL_CAS-I:CAS-III	gnl\|CDD\|379100
NZ_CP016489.1\|WP_065717511.1\|22315_24784_+\|hypothetical-protein	cas8b5	mkCas0131_cas8b5_CAS-I-B	gnl\|CDD\|273066
NZ_CP016489.1\|WP_157094662.1\|34707_34848_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP016489.1\|WP_065717519.1\|41684_42257_-\|K(+)-transporting-ATPase-subunit-C	unknown	unknown	gnl\|CDD\|184447
NZ_CP016489.1\|WP_065717512.1\|29211_30048_+\|CRISPR-associated-endoribonuclease-Cas6	cas6	COG5551_cas6_CAS-III	gnl\|CDD\|227838
NZ_CP016489.1\|WP_030008170.1\|33779_34121_-\|DUF86-domain-containing-protein	unknown	unknown	gnl\|CDD\|225236
NZ_CP016489.1\|WP_083993594.1\|38893_39124_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP016489.1\|WP_012308495.1\|31612_31906_+\|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187856
NZ_CP016489.1\|WP_062437137.1\|24786_25671_+\|hypothetical-protein	cas7	cls000038_cas7_CAS-I-B	unknown
NZ_CP016489.1\|WP_065717514.1\|30638_31616_+\|type-I-D-CRISPR-associated-endonuclease-Cas1	cas1	cd09634_cas1_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|274976
NZ_CP016489.1\|WP_065711831.1\|34113_34434_-\|nucleotidyltransferase-family-protein	unknown	unknown	gnl\|CDD\|224583

Protein	Function_ID	Function_description	E-value
NZ_CP016489.1\|WP_065711831.1\|34113_34434_-\|nucleotidyltransferase-family-protein	gnl\|CDD\|224583	COG1669, COG1669, Predicted nucleotidyltransferases [General function prediction only].	6.00161e-22
NZ_CP016489.1\|WP_065717513.1\|30057_30636_+\|CRISPR-associated-protein-Cas4	gnl\|CDD\|273040	TIGR00372, conserved_hypothetical_protein, CRISPR-associated protein Cas4. This model represents a family of proteins associated with CRISPR repeats in a wide set of prokaryotic genomes. This scope of this model has been broadened since it was first built to describe an archaeal subset only. The function of the protein is undefined. Distantly related proteins, excluded from this model, include ORFs from Mycobacteriophage D29 and Sulfolobus islandicus filamentous virus and a region of the Schizosaccharomyces pombe DNA replication helicase Dna2p.	3.57408e-33
NZ_CP016489.1\|WP_065717510.1\|21324_22188_-\|WYL-domain-containing-protein	gnl\|CDD\|379100	pfam13280, WYL, WYL domain. WYL is a Sm-like SH3 beta-barrel fold containing domain. It is a member of the WYL-like superfamily, named for three conserved amino acids found in a subset of the superfamily. However, these residues are not strongly conserved throughout the family. Rather, the conservation pattern includes four basic residues and a position often occupied by a cysteine, which are predicted to line a ligand-binding groove typical of the Sm-like SH3 beta-barrels. A WYL domain protein (sll7009) is a negative regulator of the I-D CRISPR-Cas system in Synechocystis sp. It is predicted to be a ligand-sensing domain that could bind negatively charged ligands, such as nucleotides or nucleic acid fragments, to regulate CRISPR-Cas and other defense systems such as the abortive infection AbiG system.	6.40891e-08
NZ_CP016489.1\|WP_012305531.1\|40516_41623_-\|sensor-histidine-kinase-KdpD	gnl\|CDD\|225115	COG2205, KdpD, Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms].	2.78377e-174
NZ_CP016489.1\|WP_065717509.1\|20658_21144_+\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|372305	pfam12773, DZR, Double zinc ribbon. This family consists of a pair of zinc ribbon domains.	6.55308e-10
NZ_CP016489.1\|WP_065717514.1\|30638_31616_+\|type-I-D-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274976	TIGR04093, hypothetical_protein_L8106_25395, CRISPR-associated endonuclease Cas1, subtype CYANO. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes a clade of Cas1 limited to the CYANO subtype of CRISPR/Cas system and most often the type found there.	0
NZ_CP016489.1\|WP_065717519.1\|41684_42257_-\|K(+)-transporting-ATPase-subunit-C	gnl\|CDD\|184447	PRK14003, PRK14003, K(+)-transporting ATPase subunit C.	8.81608e-116
NZ_CP016489.1\|WP_065717512.1\|29211_30048_+\|CRISPR-associated-endoribonuclease-Cas6	gnl\|CDD\|227838	COG5551, COG5551, CRISPR system related protein, RAMP superfamily [Defense mechanisms].	1.04702e-31
NZ_CP016489.1\|WP_030008170.1\|33779_34121_-\|DUF86-domain-containing-protein	gnl\|CDD\|225236	COG2361, COG2361, Uncharacterized conserved protein [Function unknown].	2.04529e-36
NZ_CP016489.1\|WP_012308495.1\|31612_31906_+\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	4.75346e-25
NZ_CP016489.1\|WP_065717511.1\|22315_24784_+\|hypothetical-protein	gnl\|CDD\|273066	TIGR00414, Serine--tRNA_ligase, seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model. [Protein synthesis, tRNA aminoacylation].	0.00490358
NZ_CP016489.1\|WP_065717515.1\|35854_36841_+\|ParM/StbA-family-protein	gnl\|CDD\|212669	cd10227, ParM_like, Plasmid segregation protein ParM and similar proteins. ParM is a plasmid-encoded bacterial homolog of actin, which polymerizes into filaments similar to F-actin, and plays a vital role in plasmid segregation. ParM filaments segregate plasmids paired at midcell into the individual daughter cells. This subfamily also contains Thermoplasma acidophilum Ta0583, an active ATPase at physiological temperatures, which has a propensity to form filaments.	9.05286e-42

>NZ_CP016489.1|WP_012308495.1|31612_31906_+|CRISPR-associated-endonuclease-Cas2
MNTLFYLIIYDLPSTKAGDKRRKRLFDLLSGYGTWKQFSVFECFLTTKQFAKLQTSIEKLIKPDEDAVCIYILDATAVKKAIAYGTSTPEKPGSIIL
>NZ_CP016489.1|WP_065717514.1|30638_31616_+|type-I-D-CRISPR-associated-endonuclease-Cas1
MSTLYLTQPDAILSKQQEAFKIALKSEDGTWKKQSIPAQTLEDIVLLGYPSMTGEAFGYALELGLPVHYLSRFGKYVGSALPSESRNGQLRLAQFRAHENPQQRLDIVKAIAKGKIHNQYNLLYRRGQKENPLKGREKLVLQKHSLDEVRGVEGLAAREYFACWQDILGDSWEFTGRFRRPPTDPVNALLSFGYGLLRTQVTAAAHIAGLDPYIGFLHETTRGQPALVLDLMEEFRPLIADSVVLTVLKQKEIKPKDFNESLGAYRLKDDACKVFLSAFDRKLCSEFKHPIFNYKCSYRRAIELQARLLARHLQEGIPYEPLIIR
>NZ_CP016489.1|WP_065717513.1|30057_30636_+|CRISPR-associated-protein-Cas4
MDDYLPLAYLNAWEYCPRRFYFEYVLGEMEINDHIIRGNHLHRNIDQAGTSTEGDTRIHRQQWVWSDRLKIKGIIDAVEETDGLLIPLEYKKGKMGKHPNDHFQLCAAALCLEERTKQKIPYGEIFYYGNRRRQQVEFTQVLRTQTEQAIIAAHLASDKPMPLPITNQKKCTDCSLKRLCLPEEIKKLVKSH
>NZ_CP016489.1|WP_065717512.1|29211_30048_+|CRISPR-associated-endoribonuclease-Cas6
MPYSLVINFVPRSPLLKTHLNGRNLHALFLDLVSSVDKDLGTQLHQQQSEKAFTLSPVQIKLNRKLMQWSYHRAIAPGTSCWWRITLLDDSLFGKLAHLWLNINRTEPWQLGSAQLDIVSILSNPQSQQPWANFISYTRLYEQALDGTDSRTSQQARKINFRFCTPTAFRKTQYDVSLPDRDLIFRSLLKRWNQYSEIPFEFTETIFEPIYPSFFDIRTEMVSDKRSKFIGCVGEMSFSILGDVNAQIIKQINTLADFSFYAGIGRKTPMGMGQVSRY
>NZ_CP016489.1|WP_062437139.1|25674_26499_+|hypothetical-protein
MYCLQLTIKPTAAMTFRMIPGSILNIATYPFVPPTSLSGFLRRLTMMKAGLDIPETKVNKEKPPTYLLPPDYITLGAYPDLSEWTGIHRTYRKGMQEFNHDDFSKLVIKGKGKNFQLHTWEYFFTEQLSGFVISQSAKKLEALRAVEGFGCYIGKEGYAYVEKASEVIEMIEEECAATPSTVVPADDLIQNSQWYGGCDIYNLYHYRWQKEAYAQLEETGVWGEEPTAVDGFIPFTGAYYSDSANHPILNYWTDQENIFIPSSLVSLLSRNDPS
>NZ_CP016489.1|WP_062437137.1|24786_25671_+|hypothetical-protein
MATGLPQINNNTRLHFDIYAILEGSQELYLGHEVQVNVNMVEVVKLSTRDGQSLEKCYISPTKRRGVERRCLIWAPHKDGTLLGDKLKCGIPATCAEIECPICSVFGGLEAGKKTLIGRVSHGGGVAIQNIDPEEKQRAMHPSRMASPKSGKDETPIPFKRQYNQPGILYPVSNHGLSITDQDFAAVAYAFLDALPRIGSGNPKGVAIAENPDTHQPLLVVDRYLVPRGKRPVISPSVTDPEIAVNDFIRLSQIPEHESENHVELNHFERWIGDTALAKLQDYSSTFVDNVLQK
>NZ_CP016489.1|WP_065717511.1|22315_24784_+|hypothetical-protein
MFISSQRLRALKILVSAVSCSQLLERSAKNSLIISLKSNSEIKVIAQSIAKNFSNSQLIRQLNILPSNNNVDFLWNLHIKANKIYFQNQEIGSLKILFKSTLPGELQARLSTESIIERYLEYLQKVYKIAVLNESDRHVELFIPDGTILDFEQLWRKFLQKVAFSDYGLPQYELPGLMQTFVAMLNSIKLAERGFNAPTLPIATRGQAIILCAWYYAVWQYTKEQYENRCINIKKWNLELEKETIADKDRKKILKDIKEAQEKSQKNIDKFAKKFGEVLAEHQDIYKKLESISSQLNSSEIDSKKSKKMKKEEQTLLSKVVFGEEFIIDKQKVFADSQKDPFKFLEIDKNKNQETFTSIAELSKKFSKTAIDQIGKKSDYFVKCIIEIYRLLEILKNNKFDPLPAPILTEEIIPPRSRSPGDDHKEFCYACGVGLDPKKAKWQVLRFMFERPSQRRQSASGEGRPHICDSCALLAFASPLKVTDESIILKLEAADNQISTQLKLKDYLRMLTCKEMNLNAGKYIVLTSDKTKKGDAASSKLGQVQYAIAKVASLFSVEVLQDFKFSLITQASEPIILSNRHLIFVKGIMAGYGQSIIESGKEINLKLGDAIRHIQKDMPYLAEYSITKNVTYSDCFELEKVRQLYWQTIQHDLGNNMTSNKRLAKRARLYKDVAALTGLTAAFVGSMESSLKSKEKEEDYRREMSKLIEKVDDPNFFGYYATLGVETIVQARLWKNPDNYFIYQQTQELLQTLGQSNREQEKEGKTWLQLYIDDVTNAYAHFADSDNYSQEKDWKELTYQLKLSLYTRFPELVRKSKNSGDN
>NZ_CP016489.1|WP_065717510.1|21324_22188_-|WYL-domain-containing-protein
MSRRGQSVTLSLRELEKAQLEELALEFGCEWGDRPNISKLIQKIAKRELKIAPNNDWQLERINALERIRIFLIDAGQIDEAIALAQILSERSELENIALRQEIEKFLQQPLPPWRQKIDNFIRRQQPFQLSYQDPRENTWTFSIHHAQIVTHEKRQYLDCWATETEGNLDLPKLQHNWSLRLDRIQDAAVSPLNEKWRSHLDSISVELHLYRGLAFAYQGKSTDVYNDWHPELPKTRQVIRQVTSTFWFFREILPYGKDCKIIGPQSISDLFKQDLEALYQMYHPKH
>NZ_CP016489.1|WP_083993592.1|21155_21362_-|hypothetical-protein
MRHSTKCITQNIDILPYKATQTKEFYPEHFAGEVMFQDDNTDECEVYASLTEAIARLEQKVAYYRDEA
>NZ_CP016489.1|WP_065717509.1|20658_21144_+|helix-turn-helix-domain-containing-protein
MDKLEALITPQSNESLGDYVQRQRRRLGLTQREVALKAEIHPQSYGKVERGQTVQLNQRTQRGLAYALQVPEEYLEALSRGIAVAVEKQQALRFCPQCWTPGSAPDPLWLVLRAQYCFACGTKLQSRCQGCQQPITSLKHRFCPYCGKPYKSSVNRPASQA
>NZ_CP016489.1|WP_030008170.1|33779_34121_-|DUF86-domain-containing-protein
MSRSLKLYLNDILTSIDKIQEYSEGLEKEAFLKHSLIFDAVTLNLQIIGEASKKIPEQIRNQYPHIPWRNIIGLRNIIAHTYFYLDEDILWHTIQHELEPLQKCIQELWDKEA
>NZ_CP016489.1|WP_065711831.1|34113_34434_-|nucleotidyltransferase-family-protein
MTKQQTACSSVITSEQVLETLRNYPNLFEEFSIKTLALFGSTAHNQATATSDLDFVVEFQNETTLSLYMDLKFFLEELFNKPVDLATKKSLKEIIREQVLNEAKYV
>NZ_CP016489.1|WP_157094662.1|34707_34848_-|hypothetical-protein
MESFSLTRKPTFRKNYLYPAIQAGLVVMKYPDNPRHPQRKYKKVDG
>NZ_CP016489.1|WP_065717515.1|35854_36841_+|ParM/StbA-family-protein
MSKLKIVIDPGSSATKVAYCLEGTSTQCFVMSPYCAAVPPDYPRSSGWMMGYTHVENAWVSHGDACYLLGAGAKKFQGSAVRNNDLKYIKALYKILGVLSHIQTQLQESPTIDLGILLPLDEYVTKDHLEESLVAAQERFEYCGRLLSLDINEITICPEGAGLFLQGLPAKINPQSARVAVLVIGHRNASWLVTDKGSPLVAESVTNNLGFRWLVQEMQRRTGHKDEITLAEMIFTGKHHDRAVHQTMEVCLPLYWQQIQNFLAEQQPVDYVVCGGGAALLLKQEITSHLSGKVSWANHLVRGLVKSGIKDRVMACRLVDGYGLLHSL
>NZ_CP016489.1|WP_083993600.1|36862_37237_+|hypothetical-protein
MSKQHFFRSEANSPLRQILEDLKQSEGRSLQKELADALLILHYPRILQKQDATPEQIQRQAELSIRRLSQEINQLTALINSLSPSSLEDSQALSRLEKFSRDGEEIEAEEAPCFSPRLFAKDTF
>NZ_CP016489.1|WP_065717591.1|37968_38478_-|DNA-binding-protein
MKYYNFELSFRLPGVNTNPEQYLDALFEAGCDDAMIGIGRNGFIGADFSRESESLELAVESAIKDIESAIPGAVLIEAGPDLVGASDIAAILGCSRQNIRQHLTMADENGPIPVYQGKRDLWHLAEVLIWLRDAKGLKIEPELIEVAAYVMTFNSNCQSKKTKKVAALA
>NZ_CP016489.1|WP_083993594.1|38893_39124_-|hypothetical-protein
MFRFLFRQDAVEATLSRRFLLNQWEKASVGNLTTVIRAMQDLEAIIDDVPAAIAYCQGLDDKVKGCVIKPCCPKWR
>NZ_CP016489.1|WP_065717518.1|39183_39429_-|hypothetical-protein
MSGKFGDIIGRAKQTSKPASQISDQQNNQQSDQSTETEKMVNLCVKVPKSLRQHWAAEAKRNGITMTEVITEALNQKFGKP
>NZ_CP016489.1|WP_012305531.1|40516_41623_-|sensor-histidine-kinase-KdpD
MYNPTAIAATNYQILPRRGKHKIFIGMAPGVGKTYRMLEEGHALKQDGVDVAIGLLEAHGREETTLKAEGLELIPRKQVYCRNVLLQEMDTEEILRRSPQLVLIDELAHTNIPGSKQEKRYQDVEKILNAGIDVYSTVNIQHLESLNDLVYRISGVVVRERIPDRIIDDADEIVVVDVTPETLQERLQEGKIYAPEKIDQALQNFFRRSNLIALRELALREIADNIEEESISETKNLHYNIRERVLVCISTYPNSIQLLRRGARIANHMNGQLFVLFVAPAGKFLSKSEALHIETCKRLCQEFTGEFLRIESPNIVTTIVKIATQERITQIVLGETRRSRFQLLFKGSIVQQLMRALPQVDIHIIANN
>NZ_CP016489.1|WP_065717519.1|41684_42257_-|K(+)-transporting-ATPase-subunit-C
MIQEIATSIRTTVFLWLLTALIYPLLIFMIGQGLFPIQANGSLIVNNQGQVIGSSLIGQAFSSEDYFWGRPSAVNYSISEDAAPTGLSGATNLAPSNPDLFALVKERAEILRAADLEPTADLLYSSGSGLDPHISPTSAIAQIDRIAAARNLSPDDLEILIEQNTEGRFLGIFGEPAVNTVTLNLALDQL

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Crispr_ID: NZ_CP016489_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP016489_2

101384-101489

Orphan

Consensus_repeat	Method
AATCCCCCTTGGAAGCAAGGTATCTACGGCA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP016489_2

>merge|NZ_CP016489|2|101384-101489|CRISPRCasFinder
AATCCCCCTTGGAAGCAAGGTATCTACGGCAGTGGCACACCGGATGACCCCTATCGAGATTACCCCGATGTCAACAATCCCCCTTGGAAGCAAGGTATCTACGGCA

>NZ_CP016489|2|2|101384-101489|CRISPRCasFinder
AATCCCCCTTGGAAGCAAGGTATCTACGGCA	GTGGCACACCGGATGACCCCTATCGAGATTACCCCGATGTCAAC
AATCCCCCTTGGAAGCAAGGTATCTACGGCA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP016489.1\|WP_065717556.1\|106183_107044_+\|NAD(P)H-binding-protein	unknown	unknown	gnl\|CDD\|187578
NZ_CP016489.1\|WP_065717552.1\|102633_103422_+\|zinc-ribbon-domain-containing-protein	unknown	unknown	gnl\|CDD\|372305
NZ_CP016489.1\|WP_065717545.1\|92565_93474_-\|zinc-ribbon-domain-containing-protein	unknown	unknown	gnl\|CDD\|379084
NZ_CP016489.1\|WP_065717549.1\|98677_99334_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|213226
NZ_CP016489.1\|WP_065717548.1\|97088_98681_+\|iron-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224099
NZ_CP016489.1\|WP_065717546.1\|94019_95846_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP016489.1\|WP_065717544.1\|91148_91424_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP016489.1\|WP_065717558.1\|108126_110325_+\|amino-acid-permease	unknown	unknown	gnl\|CDD\|273347
NZ_CP016489.1\|WP_065717550.1\|99320_100373_+\|transcriptional-regulator	unknown	unknown	gnl\|CDD\|225829
NZ_CP016489.1\|WP_065717559.1\|110443_111019_+\|DUF4126-domain-containing-protein	unknown	unknown	gnl\|CDD\|379253
NZ_CP016489.1\|WP_065717554.1\|104313_105045_+\|DUF4386-domain-containing-protein	unknown	unknown	gnl\|CDD\|379558
NZ_CP016489.1\|WP_065717557.1\|107091_107712_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226125
NZ_CP016489.1\|WP_065717547.1\|96051_97089_+\|extracellular-solute-binding-protein	unknown	unknown	gnl\|CDD\|270236
NZ_CP016489.1\|WP_065717553.1\|103597_104047_+\|GFA-family-protein	unknown	unknown	gnl\|CDD\|226314
NZ_CP016489.1\|WP_065717542.1\|88595_89948_-\|cytochrome-P450	unknown	unknown	gnl\|CDD\|215171
NZ_CP016489.1\|WP_065717555.1\|105062_106076_+\|AraC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|378890
NZ_CP016489.1\|WP_065717562.1\|113552_114785_+\|SidA/IucD/PvdA-family-monooxygenase	unknown	unknown	gnl\|CDD\|379182
NZ_CP016489.1\|WP_065711860.1\|91800_92562_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP016489.1\|WP_012305603.1\|112084_112711_-\|DUF4360-domain-containing-protein	unknown	unknown	gnl\|CDD\|372992
NZ_CP016489.1\|WP_083993604.1\|90157_90898_-\|SH3-domain-containing-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP016489.1\|WP_065717556.1\|106183_107044_+\|NAD(P)H-binding-protein	gnl\|CDD\|187578	cd05269, TMR_SDR_a, triphenylmethane reductase (TMR)-like proteins, NMRa-like, atypical (a) SDRs. TMR is an atypical NADP-binding protein of the SDR family. It lacks the active site residues of the SDRs but has a glycine rich NAD(P)-binding motif that matches the extended SDRs. Proteins in this subgroup however, are more similar in length to the classical SDRs. TMR was identified as a reducer of triphenylmethane dyes, important environmental pollutants. This subgroup also includes Escherichia coli NADPH-dependent quinine oxidoreductase (QOR2), which catalyzes two-electron reduction of quinone; but is unlikely to play a major role in protecting against quinone cytotoxicity. Atypical SDRs are distinct from classical SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.	7.11298e-55
NZ_CP016489.1\|WP_065717552.1\|102633_103422_+\|zinc-ribbon-domain-containing-protein	gnl\|CDD\|372305	pfam12773, DZR, Double zinc ribbon. This family consists of a pair of zinc ribbon domains.	1.25979e-09
NZ_CP016489.1\|WP_065717545.1\|92565_93474_-\|zinc-ribbon-domain-containing-protein	gnl\|CDD\|379084	pfam13240, zinc_ribbon_2, zinc-ribbon domain. This family consists of a single zinc ribbon domain, ie half of a pair as in family DZR. pfam12773.	2.54004e-05
NZ_CP016489.1\|WP_065717549.1\|98677_99334_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|213226	cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the carbohydrate and solute transporters-like. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.	1.2844e-85
NZ_CP016489.1\|WP_065717548.1\|97088_98681_+\|iron-ABC-transporter-permease	gnl\|CDD\|224099	COG1178, ThiP, ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism].	1.0966e-68
NZ_CP016489.1\|WP_065717555.1\|105062_106076_+\|AraC-family-transcriptional-regulator	gnl\|CDD\|378890	pfam12625, Arabinose_bd, Arabinose-binding domain of AraC transcription regulator, N-term. AraC is a bacterial transcriptional regulatory protein with a DNA-binding domain at the C-terminus, HTH_AraC, pfam00165, and this dimerization domain which harbours the arabinose-binding pocket at the N-terminus. AraC positively and negatively regulates expression of the proteins required for the uptake and catabolism of the sugar L-arabinose 1,2,3].	1.50837e-30
NZ_CP016489.1\|WP_065717547.1\|96051_97089_+\|extracellular-solute-binding-protein	gnl\|CDD\|270236	cd13518, PBP2_Fe3_thiamine_like, Substrate binding domain of iron and thiamine transporters-like, a member of the type 2 periplasmic binding fold superfamily. The periplasmic iron binding protein plays an essential role in the iron uptake pathway of Gram-negative pathogenic bacteria from the Pasteurellaceae and Neisseriaceae families and is critical for survival of these pathogens within the host. On the other hand, thiamin is an essential cofactor in all living systems. Thiamin diphosphate (ThDP)-dependent enzymes play an important role in carbohydrate and branched-chain amino acid metabolism. Most prokaryotes, plants, and fungi can synthesize thiamin, but it is not synthesized in vertebrates. These periplasmic domains have high affinities for their respective substrates and serve as the primary receptor for transport. After binding iron and thiamine with high affinity, they interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. The iron- and thiamine-binding proteins belong to the PBPI2 superfamily of periplasmic binding proteins that differ in size and ligand specificity, but have similar tertiary structures consisting of two globular subdomains connected by a flexible hinge. They have been shown to bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	6.83075e-88
NZ_CP016489.1\|WP_065717558.1\|108126_110325_+\|amino-acid-permease	gnl\|CDD\|273347	TIGR00930, Solute_carrier_family_12_member_1, K-Cl cotransporter. [Transport and binding proteins, Other].	2.11083e-135
NZ_CP016489.1\|WP_065717550.1\|99320_100373_+\|transcriptional-regulator	gnl\|CDD\|225829	COG3292, COG3292, Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms].	6.17246e-66
NZ_CP016489.1\|WP_065717559.1\|110443_111019_+\|DUF4126-domain-containing-protein	gnl\|CDD\|379253	pfam13548, DUF4126, Domain of unknown function (DUF4126).	4.65768e-41
NZ_CP016489.1\|WP_065717554.1\|104313_105045_+\|DUF4386-domain-containing-protein	gnl\|CDD\|379558	pfam14329, DUF4386, Domain of unknown function (DUF4386). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 214 and 245 amino acids in length.	2.67765e-54
NZ_CP016489.1\|WP_065717557.1\|107091_107712_-\|hypothetical-protein	gnl\|CDD\|226125	COG3597, COG3597, Uncharacterized protein/domain associated with GTPases [Function unknown].	0.00421749
NZ_CP016489.1\|WP_065717542.1\|88595_89948_-\|cytochrome-P450	gnl\|CDD\|215171	PLN02302, PLN02302, ent-kaurenoic acid oxidase.	3.54263e-78
NZ_CP016489.1\|WP_065717562.1\|113552_114785_+\|SidA/IucD/PvdA-family-monooxygenase	gnl\|CDD\|379182	pfam13434, K_oxygenase, L-lysine 6-monooxygenase (NADPH-requiring). This is family of Rossmann fold oxidoreductases that catalyzes the NADPH-dependent hydroxylation of lysine at the N6 position, EC:1.14.13.59.	2.1022e-94
NZ_CP016489.1\|WP_012305603.1\|112084_112711_-\|DUF4360-domain-containing-protein	gnl\|CDD\|372992	pfam14273, DUF4360, Domain of unknown function (DUF4360). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria and eukaryotes. Proteins in this family are typically between 200 and 228 amino acids in length. There is a conserved GCP sequence motif near the N-terminus.	2.33276e-26
NZ_CP016489.1\|WP_065717553.1\|103597_104047_+\|GFA-family-protein	gnl\|CDD\|226314	COG3791, COG3791, Uncharacterized conserved protein [Function unknown].	2.58396e-31

>NZ_CP016489.1|WP_065717550.1|99320_100373_+|transcriptional-regulator
MKYPEPYSLKLWKYLLFGAIVSTVGLFIWELLSLFQSWQGQPKQPGWEIIRPPQEVSALVIQGDHLWAGGQAGVFQIALQPPHTVEPLQCDRPLQFVRALAIDPDGVLWIGHGNGLNYVDAQGCHPYQSDKPFFQGQINALYVDRAGQLWIGTWEGAAVKENKDWHFLTPADGLPDRMVNVIHQDAEGGMWFGSAVAPKGGLSHCIKKSCQLFSTANGLAHNNITSLFSDDTGHLWVGMGLFDRGGLARLERSTTGWAIAQIFTKADGLAGEKVRSIYQDQTGVLWFGSEYDGLARLDSQGRWLILTEADGLADQEVKAMVQDRFGNLWLGTRNGITRLDAQYLRNLGEQ
>NZ_CP016489.1|WP_065717549.1|98677_99334_+|ABC-transporter-ATP-binding-protein
MIQVENLSKTYQTAKILDNLALTVEPGQTVAILGPSGSGKTTLLRLIAGLEQPDGGTISLAGQVVSSSTQILAPHLRHIGFVFQTPILWPHMTISQNIAFGLGHLTAPVKKQRIQQLLERLAIASLAHRYPYQLSGGEAKRASLARVLAPHPPYVLFDEPLTNLDLALKQTLLHYIREYLDLTAACALYVTHDPTEAQYLSEKIFWLKEGKLQSDEIS
>NZ_CP016489.1|WP_065717548.1|97088_98681_+|iron-ABC-transporter-permease
MKGDRHRLNPWTTLGLGGFLVMVFGPLLSLMASVIVELGQGNGAWLSLLVPTGRRWQLLGNSLQLAIAVGTVSTVLGGLIACYLWQTAWAWRWRWGLLPLLFVPSYIHSFGWSALGLGLNGGLRSLGFGTIPLQGWWSCGWVEVMAFLPLAVGLSWLGLAAVGREAIEAARLLVPDLQVLGQIILPLALPSFVASFGLIFLLSLMDYSLPSLFGIGNYALEIFAEYSTSNEPARAFLLAVPLLAIAWGIIFILQLPLQQTMQLSPQENLWEIPPRWPWWFVWLQYLALGLFALQILVPLINLLVMAAQESQWFTPIQAAAGEITFTIGLGLTVAIAALPLALAIAQLLNRDDRWGRVTWGLVIWALALPAPLVGIGLIDLWNRPLPLEIYGTPLMPFLAHLARFTPFASLVLLAQLQQLNQPLWEATRLEVGPRWRIWLWLRLPLLLPGLLAAAGLVFALSVGELGATLIVIPPGYSTLTLRIYNYLHYGAAASVAVLCLVLVAIAFGVGGLMAWGLQGWGTIYRGRDRP
>NZ_CP016489.1|WP_065717547.1|96051_97089_+|extracellular-solute-binding-protein
MLISIKKYCKILVFSTFFAGAIIACQPENQQQKVVVYVSVDRTYAEPILTEFTAATGIDVLPVYDVEATKTTGLAQRLLREKERPQADVFWSGEFAQTLLLQGEGVLVPYEPPVAAALPPQYRDPEGYWTGMGGRARVLLINTDRLAIDEAPQSLTDLTSDQWPGSEMAIAYPFFGTTATHAAALYAVWGPEPARAFFTDFQRKNVQVVDGNSVVRDLVVDGQVSIGLTDTDDACNAVEKGAPVALVFPDQGPGEMGTFVLTGTVAVIADGPNPDQGQALVNFLVSPETEQRLMAVGGSQLPLYPGAAVSGCLAGQSIQGMAVGLDAIYGQLEPSKQDLSEIFIR
>NZ_CP016489.1|WP_065717546.1|94019_95846_+|hypothetical-protein
MKKQHRAAGIGLQLLAVTCPVLFINNLTIAQSLSESPQDVLNSYLLERPHLRTIQFQNLQDIQARRHELQFQASDGVTLDFLPYLQSPGALPQLANIIRTQGIDPNPQLTVAAYDFADRLIILQRLEYQGSALACDQRGEALTDLGILCFNRQTKPRTLQQPAPTQNNISTKITEIRGRLNQLNTSPINGYTLSQLRALPDDELLQVALNNGRITEETYLMVPKVQYKTLLDVPFAQPNPDFTQPNFSFLETSNLYQPIPQGSMTLNRNLPFETRDNNQRPNFSLIRPQLDLSQLARGDRHTETHYLVNGFTWGSGREWRHRIGDCIDLFFGDVCVYAEPYASLGYGLGLRIPLQLDLTVDRTIQVANNQLTAFSPTVDLTPIDGNANTYQAAGIPSDQIFGGQEIVAEVQGTVGVRCDLEVWSCGNNRKLGIGVDLTDYLSSGGNMTPPAPGQSFSIGEVWSPDVTGGTLNYGIVGATFHLGSQLNMVGQDLEMLAQFPPVVGPNNGTHTVEQFPATYQPLVFNNNSFFRIYEPTYQANWNIIPGMKVKAWLGVDIGVAYLGAKTDRTWWFEDLSIESPNFTFTTHAGTTTGYNIQVDHDNLNITAF
>NZ_CP016489.1|WP_065717545.1|92565_93474_-|zinc-ribbon-domain-containing-protein
MTTPHFCMQCGAALNPGDRFCEVCGSATTPAYPAALPPRPQAPPPNRSNGNWILGLGIVVITGLGIFFLKDPAQLLKFLGQPEANTPQTQPVGENPPPSPTTQAAVTLDDFVGAWIPAEGNPGEETDTLVLYREGDKIVADIEGDRLELSNLTSRTLSGYVWSVYEDVPTPVDAELNEDKQRITFTVSPPNSEPMVAVAQRVQPGSRNSTTTPITTPSTPEITEAIAIEQVANLAAVSEWQALVRTVAPQNSTHIEIVEQTPTNYLIHVYETVNNPGEPSHTATYGWYEVDRQTGMVFEMLP
>NZ_CP016489.1|WP_065711860.1|91800_92562_+|hypothetical-protein
MKSQPIPNPLYPVVVSAGVVLAGAIALMFLPALIQLDGMDGGFAITFGALFLAISALVTLLIFWRNAVLLDRVIAGTNLLAHWTYEPQEWAQYLDRERQEQIDEKLPLVFIVACWALLIGGGFWLFDPEAGFIVFLVMVGLIILVSLLAYGLPWLRFKRDRHRLGEVWIASSAIYFRGNFVHWGELGLQLEQVSLRPASENQAPCLCFELSYPSQAGMQYYNLRIPIPRRYRAAAYDLFEHFSQTTIQDSPPG
>NZ_CP016489.1|WP_065717544.1|91148_91424_-|hypothetical-protein
MFPNLLNATQEYWRKLDALEARYQQGEISLQEVDAEVARLMRELGDERRRSLRSFKNMLQGWFRDQKEFVYGLLLVVVVVYGWVISTTQLS
>NZ_CP016489.1|WP_083993604.1|90157_90898_-|SH3-domain-containing-protein
MGAKAEDIYYIKFYKDAAGRMHGKVTRDYGGSEVVFELGLISWAPETVQLARQTKQQFGDVMGAHFNIHGLQKRTFLGIQNFMQIHRGFALHAPIWGEGPLQHNGFIDPNGHGCVRVTEHQRLYDLAKSLEVYLAYGQGLPILVDYSVFIDTDAVVPSTIQSLLPANLPTWCAINVSADGGLGRVRVEPSTDSMIVQELTRDAKVRVEEKVMGDNVNNSTDWYFVTFTLGGPQAGYIHASLLDCTR
>NZ_CP016489.1|WP_065717542.1|88595_89948_-|cytochrome-P450
MTSPSKLPLPPGKFGLPVIGETIEFFTDRNFQKKRLEKYGDVFKTNIFTKPTVVMVGAEANEVLFRNENKYVKATWPKSTRILLGADSLATQEGGIHSSRRRIIFQAFQPRALESYIPTIEKITQRYLTQWEQKQEFAWYDELRKYTFDVASTLFIGKDGGAETPLANLFEEWVKGLFSLPINLPWTAFGKAMKCRRKLLRELEMIIGDRLKTYDANAEPTDALDLLIRAKDEDGNSLSIDELKDQILLLLFAGHETLTSSLVSFGLLVGQHRDVFEKIRAEQDALDIGDGLDMAALQQMTYLDQVFKEVLRLVPPVGGGFREVINTFEYKNFQIPQGWAVQYQIAQTHKDEALYPDHEKFDPERFSPERLADKQKKFGFIPFGGGMRECIGKEFARLEAKILASMLARDYDWELLPDQDLSMQVIPTPLPKDGLQIRFYRRKESSSTTA
>NZ_CP016489.1|WP_065717552.1|102633_103422_+|zinc-ribbon-domain-containing-protein
MVTPQEHPLLPLATAIANLGYQPTSLLWNATQRMAQVPGLAQDLLAYVKAGSPPPDFSQQQPASLFKPLPGGYSVATLIRDYQFQAIGAFLIAVELSLRPDQGKALLNYFLHRGYWRTNTDGSRDLIFPPLTEQLPQCPQCRSRWFEDLPRCPSCGLVRRHVTVEDGPLPLEELATMTRTQSVDQKVPAAIAPNHPVSPTSVNRRCAQCHHPLSQNSHFCPHCGAVVAVAAAPIEHPSACPKCGHLARPGAKFCSHCGLNLN
>NZ_CP016489.1|WP_065717553.1|103597_104047_+|GFA-family-protein
MDTAVRKVKGQCRCGQVKFEVTSEPLITMACHCVGCQKMTASAFSLSALFPSATFAVTSGVPVIGGMHGNTRHYFCGYCMSWLFTRPEGLDDFVNVRSTMLDHPQNYKPFMETYTDEKLEWATTGAKRSFKKLPLPEEYPALIQEYVNK
>NZ_CP016489.1|WP_065717554.1|104313_105045_+|DUF4386-domain-containing-protein
MADQTFKTSPQIYARAVGVLYLIIIVLGLFSEIFVRSPLIAPGDAATTASNIMAAEPLFRVGFLADSIMCLSDVAVAVLLFVLLRPINKILALIALCFRVTQTAVIALSLLNYYAAILLLKGSSYTAAFDVAQLNSLSSLFLDLHSYGYDLGLILFGVHCLVLGYLIAKSLYMPRVLGYLVMAAGVTYLIGSYTRFLFPDFVEAIAPIYLVTIISELSLCLWLLIKGVNPKQWQEKTESVGLL
>NZ_CP016489.1|WP_065717555.1|105062_106076_+|AraC-family-transcriptional-regulator
MGQITSLFVRKVVGVVEDALDKDDLLKSLGIDPDSAADPSQMVSDTDYYSFLEKIAIAENNGTTLPLRAGAAMRCDDYGAFGLAWKSATNLGGSYERAERYARVLTSVSTYTVERIDQGAFIHLHRMGDRRLGMRLSNEATIASIVSISRQVSTKPFTPLAVYFKHQAPKRIREHQAYFGCPMHFDADRDALLVSNESLQTPNQLGDKSISQFFDTHLETELSKLTEPHSLEHQVRIYVSRCLSEGVPTISDVAEHFTISGRTLQRRLSELGYSYQTLVDESRRQLAERLLQQTDYSLAEIAFMTGFSEQSAFTRAFKRWAGQTPRSFRLNLQTKPN
>NZ_CP016489.1|WP_065717556.1|106183_107044_+|NAD(P)H-binding-protein
MNTIQHQTHNSNGLTLVLGGTGKTGRRIVTTLEAKGIPTRIGSRSATPAFDWHHETSWDVCLKNVAAVYINYAPDLAMPGATDAIQAFVDRAKGHGVKRLVLLSGRGEIEAQACEQIVQESGLDWTIIRASWFNQNFSEGAFLEMVTAGQITLPAGDISEPFVDVDDIAEVAVAALTETGHAGEIYEVTGPRLMTFADIAAELSNASGCEITYVPVPHDAFVAGIKESGAPKEVVWMLDYLFNTVLDGRNAYLTDGIQRALGRSPKDFADYASEVAATGLWQPVTV
>NZ_CP016489.1|WP_065717557.1|107091_107712_-|hypothetical-protein
MPTNPFDSKARQKDLHDFIETLTANTGQNLAAIANNPIFKTIQKIFGFGWLAAIVGDVDVAMAQAEIQRLKQAYPNENSTQLTQRVIQAKSLEAAKLGFVANLLPPLALALFGWELASMTRLQAEMVYQISGLHGLNLQDPRRRAEILAIFGLSLGGNGLKTGLSFLEMIPLVGTVVGVSSNSLMMYSLGLVADQFYRFKQDAQKY
>NZ_CP016489.1|WP_065717558.1|108126_110325_+|amino-acid-permease
MPLKTSSTAVTTPADKAGLGMFGGVFTPSLLTILGVIMYLRFGWVVGNVGLFGTWLIVTMAVSITFLTTLSICAIATDRVVRTGGAYFMISRSLGIETGGAVGIPLYFAQALSVALYTIGFAESVVNAFGPFNQTYIALIVTILVAVLAITSAEIAIKAQYFIMAIIALSLVSLAFGSPLEVTQLEPWGTDGGESFWTVFAVFFPAVTGIMAGVNMSGDLKEPTKAIPTGTLAAVGVGYLIYMALPFFLATRADANTLVENPLIMQQIAFWGPSILLGIWGATLSSAIGSILGAPRILQALARDRVLPRWLSFLGKGSGPNNEPRIGTAITLGIVTVAVMVGDLNLIAPVLSMFFLTTYLVLNIAAGVEGFLDSPSFRPLFAVHWSFSLLGALGCLAVMFLINPVATIVAGLIVAMIFLWIQRRELKSTWGDARRGIWMMLLRTSLFQLGHHPDPRTWRPHMLVLSGAPTRRWGLIELADGLNRNRGLFTIASILPMDSRSIRQQQQMEKSINDYLQERNIQALVRVLTAQDPFVGVERLVEIYGLGPIVPDTVLLGNNETPENRSSYCQLIHALHRAERNVIIYREKSQPESKQHHQIDVWWGGLHANGALMMILAELLRDSMEWRSAQIYLKLVVPDQSAAATAKQNINVLVQTLRIDAEICILVAEGRSFDEILSESSRNADQVILGIAEPNENFCDYYASIEERIHDLPSTMLVLAAPSFAFAEVLKK
>NZ_CP016489.1|WP_065717559.1|110443_111019_+|DUF4126-domain-containing-protein
MDIILALCIGVTLSAAAGFRIFIPPLMLSGMAIFGDLSLGEDFVWLGTYPAFFAFGIATIVEILAYYIPVVDNLLDGIEIPLAIAVGTLLTSASLGQLTELEPLLQWTLAILAGGSTAGTIETFTAVTRGASTTATGGIANPVVSTVEALSAGVLSLLALFVPFLAIAIVVGVLGVALQRLFRVFVRKSRS
>NZ_CP016489.1|WP_012305603.1|112084_112711_-|DUF4360-domain-containing-protein
MKLEHAFLGLLAASGIVTANVQAVKAEEGFAFKRVPVIVNGSGCPPGSAFGIVNGNSVSIIFSEMYTEAARREFKRASCNIRMKLDVPSGYTVQPVNLRYLGYANIPNVSGARSTLNTFASFGASGGWVDRSNFGPGFQSDFERNVDIALSAVNACTRPVTTNFGINTNISAWGPRSGDEVTSMGIDTVDVTLEDVIYRIEFGFIPCS
>NZ_CP016489.1|WP_065717562.1|113552_114785_+|SidA/IucD/PvdA-family-monooxygenase
MQQCDIAIIGAGVQALTLVLHLLKKRPQWRKRIVVFDPHGCWLARWSHQFAAQEIPHLRSPAVHHPHPDPFALRRFAEGRPNELFPPYDLPSTQLFEDFCREAIAEFQLDQRLIAAAVTELIPPQRGQRKFCLTLHNGQQWQAKRVVLATNQTQRQLPDWLEQIEASYSSDRLCHSDRVDLRKLHLQGEKIVIVGGGLSTGHLALGAIARQAQVTIVARRPFQEKLFDADAGWLGPKYLKGFAAETDWQKRHQMILEARNGSSLTPAVMTQLRRAKRQDKVTLKPNCQIQAAHWQGNYWQLHCDNGEILQGDRLWLATGSRFDVMAESLLTKVMDRYPQPILNGLPILDAYLRWQGCDLFLMGGLAALQLGPTARNISGARLACDRLVPALTKSSLQRIYQANTCSGVSA

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Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP016489_1	1.1\|32155\|34\|NZ_CP016489\|PILER-CR,CRISPRCasFinder,CRT	32155-32188	34	NZ_CP016489	Synechococcus sp. PCC 8807 plasmid unnamed6, complete sequence	32155-32188	0	1.0
NZ_CP016489_1	1.2\|32226\|36\|NZ_CP016489\|PILER-CR,CRISPRCasFinder,CRT	32226-32261	36	NZ_CP016489	Synechococcus sp. PCC 8807 plasmid unnamed6, complete sequence	32226-32261	0	1.0
NZ_CP016489_1	1.3\|32299\|41\|NZ_CP016489\|PILER-CR,CRISPRCasFinder,CRT	32299-32339	41	NZ_CP016489	Synechococcus sp. PCC 8807 plasmid unnamed6, complete sequence	32299-32339	0	1.0
NZ_CP016489_1	1.4\|32377\|38\|NZ_CP016489\|PILER-CR,CRISPRCasFinder,CRT	32377-32414	38	NZ_CP016489	Synechococcus sp. PCC 8807 plasmid unnamed6, complete sequence	32377-32414	0	1.0
NZ_CP016489_1	1.5\|32452\|34\|NZ_CP016489\|PILER-CR,CRISPRCasFinder,CRT	32452-32485	34	NZ_CP016489	Synechococcus sp. PCC 8807 plasmid unnamed6, complete sequence	32452-32485	0	1.0
NZ_CP016489_1	1.6\|32523\|36\|NZ_CP016489\|PILER-CR,CRISPRCasFinder,CRT	32523-32558	36	NZ_CP016489	Synechococcus sp. PCC 8807 plasmid unnamed6, complete sequence	32523-32558	0	1.0
NZ_CP016489_1	1.7\|32596\|36\|NZ_CP016489\|PILER-CR,CRISPRCasFinder,CRT	32596-32631	36	NZ_CP016489	Synechococcus sp. PCC 8807 plasmid unnamed6, complete sequence	32596-32631	0	1.0
NZ_CP016489_1	1.8\|32669\|36\|NZ_CP016489\|PILER-CR,CRISPRCasFinder,CRT	32669-32704	36	NZ_CP016489	Synechococcus sp. PCC 8807 plasmid unnamed6, complete sequence	32669-32704	0	1.0
NZ_CP016489_1	1.9\|32742\|31\|NZ_CP016489\|PILER-CR,CRISPRCasFinder,CRT	32742-32772	31	NZ_CP016489	Synechococcus sp. PCC 8807 plasmid unnamed6, complete sequence	32742-32772	0	1.0
NZ_CP016489_1	1.10\|32810\|35\|NZ_CP016489\|PILER-CR,CRISPRCasFinder,CRT	32810-32844	35	NZ_CP016489	Synechococcus sp. PCC 8807 plasmid unnamed6, complete sequence	32810-32844	0	1.0
NZ_CP016489_1	1.11\|32882\|34\|NZ_CP016489\|PILER-CR,CRISPRCasFinder,CRT	32882-32915	34	NZ_CP016489	Synechococcus sp. PCC 8807 plasmid unnamed6, complete sequence	32882-32915	0	1.0
NZ_CP016489_1	1.11\|32882\|34\|NZ_CP016489\|PILER-CR,CRISPRCasFinder,CRT	32882-32915	34	NZ_CP016489	Synechococcus sp. PCC 8807 plasmid unnamed6, complete sequence	32953-32986	0	1.0
NZ_CP016489_1	1.12\|32953\|34\|NZ_CP016489\|PILER-CR,CRISPRCasFinder,CRT	32953-32986	34	NZ_CP016489	Synechococcus sp. PCC 8807 plasmid unnamed6, complete sequence	32882-32915	0	1.0
NZ_CP016489_1	1.12\|32953\|34\|NZ_CP016489\|PILER-CR,CRISPRCasFinder,CRT	32953-32986	34	NZ_CP016489	Synechococcus sp. PCC 8807 plasmid unnamed6, complete sequence	32953-32986	0	1.0
NZ_CP016489_1	1.13\|33024\|35\|NZ_CP016489\|PILER-CR,CRISPRCasFinder,CRT	33024-33058	35	NZ_CP016489	Synechococcus sp. PCC 8807 plasmid unnamed6, complete sequence	33024-33058	0	1.0
NZ_CP016489_1	1.14\|33096\|32\|NZ_CP016489\|PILER-CR,CRISPRCasFinder,CRT	33096-33127	32	NZ_CP016489	Synechococcus sp. PCC 8807 plasmid unnamed6, complete sequence	33096-33127	0	1.0
NZ_CP016489_1	1.15\|33165\|35\|NZ_CP016489\|PILER-CR,CRISPRCasFinder,CRT	33165-33199	35	NZ_CP016489	Synechococcus sp. PCC 8807 plasmid unnamed6, complete sequence	33165-33199	0	1.0
NZ_CP016489_1	1.16\|33237\|34\|NZ_CP016489\|PILER-CR,CRISPRCasFinder,CRT	33237-33270	34	NZ_CP016489	Synechococcus sp. PCC 8807 plasmid unnamed6, complete sequence	33237-33270	0	1.0
NZ_CP016489_1	1.17\|33308\|36\|NZ_CP016489\|PILER-CR,CRISPRCasFinder,CRT	33308-33343	36	NZ_CP016489	Synechococcus sp. PCC 8807 plasmid unnamed6, complete sequence	33308-33343	0	1.0
NZ_CP016489_1	1.18\|33381\|35\|NZ_CP016489\|PILER-CR,CRISPRCasFinder,CRT	33381-33415	35	NZ_CP016489	Synechococcus sp. PCC 8807 plasmid unnamed6, complete sequence	33381-33415	0	1.0
NZ_CP016489_1	1.19\|33453\|34\|NZ_CP016489\|PILER-CR,CRISPRCasFinder,CRT	33453-33486	34	NZ_CP016489	Synechococcus sp. PCC 8807 plasmid unnamed6, complete sequence	33453-33486	0	1.0
NZ_CP016489_2	2.1\|101415\|44\|NZ_CP016489\|CRISPRCasFinder	101415-101458	44	NZ_CP016489	Synechococcus sp. PCC 8807 plasmid unnamed6, complete sequence	101415-101458	0	1.0
NZ_CP016489_2	2.1\|101415\|44\|NZ_CP016489\|CRISPRCasFinder	101415-101458	44	NC_010474	Synechococcus sp. PCC 7002 plasmid pAQ7, complete sequence	136551-136594	3	0.932
NZ_CP016489_1	1.1\|32155\|34\|NZ_CP016489\|PILER-CR,CRISPRCasFinder,CRT	32155-32188	34	NZ_CP032322	Azospirillum brasilense strain MTCC4035 plasmid p1, complete sequence	674895-674928	10	0.706
NZ_CP016489_1	1.16\|33237\|34\|NZ_CP016489\|PILER-CR,CRISPRCasFinder,CRT	33237-33270	34	NC_048170	Escherichia phage vB_EcoM_Goslar, complete genome	75061-75094	10	0.706

1. spacer 1.1|32155|34|NZ_CP016489|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP016489 (Synechococcus sp. PCC 8807 plasmid unnamed6, complete sequence) position: , mismatch: 0, identity: 1.0

ctgctaaggccgtcctttccgctgaaggcaaaat	CRISPR spacer
ctgctaaggccgtcctttccgctgaaggcaaaat	Protospacer
**********************************

2. spacer 1.2|32226|36|NZ_CP016489|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP016489 (Synechococcus sp. PCC 8807 plasmid unnamed6, complete sequence) position: , mismatch: 0, identity: 1.0

gccctttctcgtattgaagcaaccttccccaacaac	CRISPR spacer
gccctttctcgtattgaagcaaccttccccaacaac	Protospacer
************************************

3. spacer 1.3|32299|41|NZ_CP016489|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP016489 (Synechococcus sp. PCC 8807 plasmid unnamed6, complete sequence) position: , mismatch: 0, identity: 1.0

gtgcgatccgttacccagtatttgcgattaccgcccaacaa	CRISPR spacer
gtgcgatccgttacccagtatttgcgattaccgcccaacaa	Protospacer
*****************************************

4. spacer 1.4|32377|38|NZ_CP016489|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP016489 (Synechococcus sp. PCC 8807 plasmid unnamed6, complete sequence) position: , mismatch: 0, identity: 1.0

agaaacagagttgaagagggtcacagaattgaatcaaa	CRISPR spacer
agaaacagagttgaagagggtcacagaattgaatcaaa	Protospacer
**************************************

5. spacer 1.5|32452|34|NZ_CP016489|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP016489 (Synechococcus sp. PCC 8807 plasmid unnamed6, complete sequence) position: , mismatch: 0, identity: 1.0

aattctttctcaatgcccgcgaccaatcgagcga	CRISPR spacer
aattctttctcaatgcccgcgaccaatcgagcga	Protospacer
**********************************

6. spacer 1.6|32523|36|NZ_CP016489|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP016489 (Synechococcus sp. PCC 8807 plasmid unnamed6, complete sequence) position: , mismatch: 0, identity: 1.0

aaaagaaccccggatacttgactaaaatcaatttgg	CRISPR spacer
aaaagaaccccggatacttgactaaaatcaatttgg	Protospacer
************************************

7. spacer 1.7|32596|36|NZ_CP016489|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP016489 (Synechococcus sp. PCC 8807 plasmid unnamed6, complete sequence) position: , mismatch: 0, identity: 1.0

ttcccaaacccagaccctagcgtggtttttccccaa	CRISPR spacer
ttcccaaacccagaccctagcgtggtttttccccaa	Protospacer
************************************

8. spacer 1.8|32669|36|NZ_CP016489|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP016489 (Synechococcus sp. PCC 8807 plasmid unnamed6, complete sequence) position: , mismatch: 0, identity: 1.0

aaaagcagaaaatgcttatctcaaagagcagcttta	CRISPR spacer
aaaagcagaaaatgcttatctcaaagagcagcttta	Protospacer
************************************

9. spacer 1.9|32742|31|NZ_CP016489|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP016489 (Synechococcus sp. PCC 8807 plasmid unnamed6, complete sequence) position: , mismatch: 0, identity: 1.0

aagggaagatatttccaaaccacggtcacga	CRISPR spacer
aagggaagatatttccaaaccacggtcacga	Protospacer
*******************************

10. spacer 1.10|32810|35|NZ_CP016489|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP016489 (Synechococcus sp. PCC 8807 plasmid unnamed6, complete sequence) position: , mismatch: 0, identity: 1.0

aacagagaaatcggagaatccattaagcgatccat	CRISPR spacer
aacagagaaatcggagaatccattaagcgatccat	Protospacer
***********************************

11. spacer 1.11|32882|34|NZ_CP016489|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP016489 (Synechococcus sp. PCC 8807 plasmid unnamed6, complete sequence) position: , mismatch: 0, identity: 1.0

atgagggcaccaacgttacagcctcggttattga	CRISPR spacer
atgagggcaccaacgttacagcctcggttattga	Protospacer
**********************************

12. spacer 1.11|32882|34|NZ_CP016489|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP016489 (Synechococcus sp. PCC 8807 plasmid unnamed6, complete sequence) position: , mismatch: 0, identity: 1.0

atgagggcaccaacgttacagcctcggttattga	CRISPR spacer
atgagggcaccaacgttacagcctcggttattga	Protospacer
**********************************

13. spacer 1.12|32953|34|NZ_CP016489|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP016489 (Synechococcus sp. PCC 8807 plasmid unnamed6, complete sequence) position: , mismatch: 0, identity: 1.0

atgagggcaccaacgttacagcctcggttattga	CRISPR spacer
atgagggcaccaacgttacagcctcggttattga	Protospacer
**********************************

14. spacer 1.12|32953|34|NZ_CP016489|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP016489 (Synechococcus sp. PCC 8807 plasmid unnamed6, complete sequence) position: , mismatch: 0, identity: 1.0

atgagggcaccaacgttacagcctcggttattga	CRISPR spacer
atgagggcaccaacgttacagcctcggttattga	Protospacer
**********************************

15. spacer 1.13|33024|35|NZ_CP016489|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP016489 (Synechococcus sp. PCC 8807 plasmid unnamed6, complete sequence) position: , mismatch: 0, identity: 1.0

tcctgttttgccttctttgccctcagaagcttctg	CRISPR spacer
tcctgttttgccttctttgccctcagaagcttctg	Protospacer
***********************************

16. spacer 1.14|33096|32|NZ_CP016489|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP016489 (Synechococcus sp. PCC 8807 plasmid unnamed6, complete sequence) position: , mismatch: 0, identity: 1.0

cagcgttgccagaatagcaaaagcattgccgg	CRISPR spacer
cagcgttgccagaatagcaaaagcattgccgg	Protospacer
********************************

17. spacer 1.15|33165|35|NZ_CP016489|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP016489 (Synechococcus sp. PCC 8807 plasmid unnamed6, complete sequence) position: , mismatch: 0, identity: 1.0

cagcgaggtttgccctgtttccatcaagttgaaaa	CRISPR spacer
cagcgaggtttgccctgtttccatcaagttgaaaa	Protospacer
***********************************

18. spacer 1.16|33237|34|NZ_CP016489|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP016489 (Synechococcus sp. PCC 8807 plasmid unnamed6, complete sequence) position: , mismatch: 0, identity: 1.0

ttgttaatcattgcttttgcctgcgggatggctt	CRISPR spacer
ttgttaatcattgcttttgcctgcgggatggctt	Protospacer
**********************************

19. spacer 1.17|33308|36|NZ_CP016489|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP016489 (Synechococcus sp. PCC 8807 plasmid unnamed6, complete sequence) position: , mismatch: 0, identity: 1.0

gtattattcacggttatgttggacttatcaataaaa	CRISPR spacer
gtattattcacggttatgttggacttatcaataaaa	Protospacer
************************************

20. spacer 1.18|33381|35|NZ_CP016489|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP016489 (Synechococcus sp. PCC 8807 plasmid unnamed6, complete sequence) position: , mismatch: 0, identity: 1.0

ttagcagggagcgagttcgacaactacttccctga	CRISPR spacer
ttagcagggagcgagttcgacaactacttccctga	Protospacer
***********************************

21. spacer 1.19|33453|34|NZ_CP016489|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP016489 (Synechococcus sp. PCC 8807 plasmid unnamed6, complete sequence) position: , mismatch: 0, identity: 1.0

agacattgacgccaaaacccaaaagccattccaa	CRISPR spacer
agacattgacgccaaaacccaaaagccattccaa	Protospacer
**********************************

22. spacer 2.1|101415|44|NZ_CP016489|CRISPRCasFinder matches to NZ_CP016489 (Synechococcus sp. PCC 8807 plasmid unnamed6, complete sequence) position: , mismatch: 0, identity: 1.0

gtggcacaccggatgacccctatcgagattaccccgatgtcaac	CRISPR spacer
gtggcacaccggatgacccctatcgagattaccccgatgtcaac	Protospacer
********************************************

23. spacer 2.1|101415|44|NZ_CP016489|CRISPRCasFinder matches to NC_010474 (Synechococcus sp. PCC 7002 plasmid pAQ7, complete sequence) position: , mismatch: 3, identity: 0.932

gtggcacaccggatgacccctatcgagattaccccgatgtcaac	CRISPR spacer
gtggaacaccggatgacccctatcgagattaccccgatgccaat	Protospacer
**** **********************************.***.

24. spacer 1.1|32155|34|NZ_CP016489|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP032322 (Azospirillum brasilense strain MTCC4035 plasmid p1, complete sequence) position: , mismatch: 10, identity: 0.706

ctgctaaggccgtcctttccgctgaaggcaaaat	CRISPR spacer
ggacggtggccgtcctttccggcgaaggcaaaga	Protospacer
  .* . ************** .*********.

25. spacer 1.16|33237|34|NZ_CP016489|PILER-CR,CRISPRCasFinder,CRT matches to NC_048170 (Escherichia phage vB_EcoM_Goslar, complete genome) position: , mismatch: 10, identity: 0.706

------ttgttaatcattgcttttgcctgcgggatggctt	CRISPR spacer
cgaagctcg------gttgcgttttcctgcgggatggctt	Protospacer
      *.*      .**** *** ***************

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP016483

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP016483_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP016483_1

80578-80697

Orphan

Consensus_repeat	Method
GGTCAGAAATCAGCACAACAGCACTCGAAGCCA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP016483_1

>merge|NZ_CP016483|1|80578-80697|CRISPRCasFinder
GGTCAGAAATCAGCACAACAGCACTCGAAGCCATGTCACCTATGAGCATCGAGTGACCCGGACCGGGGTCAGTGCCGTTAACACCCAGGTCAGAAATCAGCACAGCAGCACTCGAAGCCA

>NZ_CP016483|1|1|80578-80697|CRISPRCasFinder
GGTCAGAAATCAGCACAACAGCACTCGAAGCCA	TGTCACCTATGAGCATCGAGTGACCCGGACCGGGGTCAGTGCCGTTAACACCCA
GGTCAGAAATCAGCACAGCAGCACTCGAAGCCA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP016483.1\|WP_157096802.1\|83654_83933_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP016483.1\|WP_012305713.1\|86090_86927_-\|ribosome-biogenesis-GTPase-YlqF	unknown	unknown	gnl\|CDD\|236570
NZ_CP016483.1\|WP_065715692.1\|75853_76093_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP016483.1\|WP_065715693.1\|76210_77116_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP016483.1\|WP_083993458.1\|77252_77501_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|238045
NZ_CP016483.1\|WP_157096800.1\|78382_78547_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP016483.1\|WP_065715699.1\|82509_82863_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP016483.1\|WP_065715690.1\|73956_75297_-\|transposase	unknown	unknown	gnl\|CDD\|376564
NZ_CP016483.1\|WP_065715698.1\|81594_82392_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP016483.1\|WP_157096801.1\|83333_83651_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP016483.1\|WP_065715696.1\|78543_79134_-\|site-specific-integrase	unknown	unknown	gnl\|CDD\|271175
NZ_CP016483.1\|WP_065715691.1\|75588_75864_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP016483.1\|WP_065715695.1\|78057_78333_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP016483.1\|WP_012305712.1\|85773_86031_-\|TIGR03643-family-protein	unknown	unknown	gnl\|CDD\|378528
NZ_CP016483.1\|WP_157096804.1\|84668_85457_+\|glycoside-hydrolase-family-protein	unknown	unknown	gnl\|CDD\|381599
NZ_CP016483.1\|WP_065715700.1\|82926_83286_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP016483.1\|WP_157096803.1\|83935_84739_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP016483.1\|WP_062431638.1\|79348_79717_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP016483.1\|WP_065709845.1\|85446_85665_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP016483.1\|WP_065715694.1\|77606_78041_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP016483.1\|WP_083993458.1\|77252_77501_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	4.50565e-09
NZ_CP016483.1\|WP_012305712.1\|85773_86031_-\|TIGR03643-family-protein	gnl\|CDD\|378528	pfam10985, DUF2805, Protein of unknown function (DUF2805). This is a bacterial family of proteins with unknown function.	1.09782e-40
NZ_CP016483.1\|WP_157096804.1\|84668_85457_+\|glycoside-hydrolase-family-protein	gnl\|CDD\|381599	cd00737, lyz_endolysin_autolysin, endolysin and autolysin. The dsDNA phages of eubacteria use endolysins or muralytic enzymes in conjunction with hollin, a small membrane protein, to degrade the peptidoglycan found in bacterial cell walls. Similarly, bacteria produce autolysins to facilitate the biosynthesis of its cell wall heteropolymer peptidoglycan and cell division. Endolysins and autolysins are found in viruses and bacteria, respectively. Both endolysin and autolysin enzymes cleave the glycosidic beta 1,4-bonds between the N-acetylmuramic acid and the N-acetylglucosamine of the peptidoglycan.	4.17617e-35
NZ_CP016483.1\|WP_065715690.1\|73956_75297_-\|transposase	gnl\|CDD\|376564	pfam01548, DEDD_Tnp_IS110, Transposase. Transposase proteins are necessary for efficient DNA transposition. This family includes an amino-terminal region of the pilin gene inverting protein (PIVML) and of members of the IS111A/IS1328/IS1533 family of transposases. The C-terminus is represented by family pfam02371.	2.71066e-05
NZ_CP016483.1\|WP_012305713.1\|86090_86927_-\|ribosome-biogenesis-GTPase-YlqF	gnl\|CDD\|236570	PRK09563, rbgA, GTPase YlqF; Reviewed.	7.33063e-148
NZ_CP016483.1\|WP_065715696.1\|78543_79134_-\|site-specific-integrase	gnl\|CDD\|271175	cd00397, DNA_BRE_C, DNA breaking-rejoining enzymes, C-terminal catalytic domain. The DNA breaking-rejoining enzyme superfamily includes type IB topoisomerases and tyrosine based site-specific recombinases (integrases) that share the same fold in their catalytic domain containing conserved active site residues. The best-studied members of this diverse superfamily include Human topoisomerase I, the bacteriophage lambda integrase, the bacteriophage P1 Cre recombinase, the yeast Flp recombinase, and the bacterial XerD/C recombinases. Their overall reaction mechanism is essentially identical and involves cleavage of a single strand of a DNA duplex by nucleophilic attack of a conserved tyrosine to give a 3' phosphotyrosyl protein-DNA adduct. In the second rejoining step, a terminal 5' hydroxyl attacks the covalent adduct to release the enzyme and generate duplex DNA. The enzymes differ in that topoisomerases cleave and then rejoin the same 5' and 3' termini, whereas a site-specific recombinase transfers a 5' hydroxyl generated by recombinase cleavage to a new 3' phosphate partner located in a different duplex region. Many DNA breaking-rejoining enzymes also have N-terminal domains, which show little sequence or structure similarity.	8.07186e-15

>NZ_CP016483.1|WP_062431638.1|79348_79717_+|hypothetical-protein
MATFNLVSIPAATFDDVSRQLTIDCTNAAYTDKIPAVPTNEEQIEVGFILALEAAAAGKRTDLDAPVSNADALDIDSPNYQFVSRENADATVTETQLEYIPNLRLWMKADVVNATNAVNDND
>NZ_CP016483.1|WP_065715696.1|78543_79134_-|site-specific-integrase
MEKSTQGKAAYISRKEAAKIRSFLTLDSHRLMWDIARYTGERWGAIAQLKVTDIWSDPVRRYLRETIVFRKETRKRGGGKEAIAREIEIHPELHRSLSAYIPPTVGWLFPSPSDLLHHVTLRSCDKFLRRAVTLAGLSHKKISTHSTRRSFITDLSRNGVDRRVIKELTGHGSYEMLDKYIESDPQARRRALASLI
>NZ_CP016483.1|WP_157096800.1|78382_78547_+|hypothetical-protein
MSNYDPRKIPDSIFRLRMTIQHLEKRVESLETMVALLALWVLALSIALAIAFFV
>NZ_CP016483.1|WP_065715695.1|78057_78333_+|hypothetical-protein
MTEPLFDILGYEPPIVVKEDGHDGKEIDDPDYMFPGSRPKPKGDRPQKRRSYIEEKTIRGRVYLYERWRENGKLKSKYLGSKSKLQQPVIQ
>NZ_CP016483.1|WP_065715694.1|77606_78041_+|hypothetical-protein
MTYGYENEDCYKYIYLAAKGEDPPIPIGEDKRLLSDAVAWVKKMVSRQMTIKEFNAADISEWQIETRQGEIQYTEPNFADPVSHQGEYLALLFLADPEPYAISPPKIENSLVPYRFWAFLAHDSFENMLSWDDDIGEVIEFPLD
>NZ_CP016483.1|WP_083993458.1|77252_77501_+|helix-turn-helix-transcriptional-regulator
MMHKERERGSPTLKELIRAAGFSQVGFCEQVGISTSSLRYYNSGEKEPTLGVVLKMCEVLQVSPKAIASALGKDVKDVPDDR
>NZ_CP016483.1|WP_065715693.1|76210_77116_-|hypothetical-protein
MTFVDLIQGADLEYAPQWLRDFWDECQWLKEESDEWQDLNGDYSAMDFVTEFRKQSYGYIKAGIIAHQIRTKRVYAKISQSFTAFCEKWLGRSIWQVNRIIDAAGVAIRLIGMGFTELPATESQCRPLVKLIDFDLENVWSRVCRFIPEKDRTAKNIEAIACRLSDVDPDYQGKAPSKRIELPREQWDLLTEKAARYGMKPKKYLEILLQKDLGDEPTDPLQEPEPKPSKRSKGFGGFSFAGNLPNLLPNIFPNHAQTAEKIRDERQDDSTGTIEAGIDPSFTQPLFPRGCPASPPMDQSR
>NZ_CP016483.1|WP_065715692.1|75853_76093_-|hypothetical-protein
MSKLQRQAMLTKATIRFNSVLHEMDLPIQFEMVFELPPDDPVLAYQQAKEAAIACLMDDGAQIDYSYPTAEPRENHHVH
>NZ_CP016483.1|WP_065715691.1|75588_75864_-|hypothetical-protein
MFTKIPSVYPLFLPAIERDRIPARWLNLALIEEITRSKASGQYVIFLSSGHSKEIPNLWAKMIFAEFKRLEMARHQKGDRPHIKKRSSTPT
>NZ_CP016483.1|WP_065715690.1|73956_75297_-|transposase
MKILGIDIGRGLATCCLLDHFPENPRQYALDGAQYRQFTADPKGIREILAYGADIAVLEPTGTNYSKLWGTHLARNGVEVRLVAHHSLKKHREFLRFPDKDDEFDSFALAHYGWTHLNDPQWFLQMRDQTIVKLREKVLRLAHLNRVQSPIINRLKQDLEWQFPEIANKDLLARRSKSVPRWIRWIAGEYKSSAFDRKYAKTCGLGLTDDARSHARRLVRIIEEEIQIEIETEKFKQDERFKPYLVVFDVFGMGDRLQSVILTQIFPITGFLDENGDRIVIYKRGRYSKKQTKREISRRRFEKCLGVAPSREASGKKDNRQIVGGSDISRSMLWLWVFTRVSIAKQRDSNAVAQLIYLWMNAPKRQGIPIRLLRTKTAAHATRLLFKALVGYVQRGEYVDLVHYHPNELGHCSLCGGPLTDGECSHCESIRARLLSSWKAAENALK
>NZ_CP016483.1|WP_065715698.1|81594_82392_+|hypothetical-protein
MAVSDEWSFTRSFLRRTHNREVNEYFRDIDPDFIGDNTTGRNATKRACLILPNESQNRALLKILTFRYVVQQVHLKPAVFGLPVTTFQEQVRYLPQIIIHYRERADIARANNRYPLRARYAVRYRGDVTSAADLALLENRIFQIFDTPTHYFDKGRFKFSYRDPEKGYSLVVAAAGEADAKDVINKMLDLNFDTPDWDNLTKSEYTEPLALLEGTVRVGGELHRIPKKRPSGRVYFQTAELSVWGMPKNKILYTNGSPRQNATFF
>NZ_CP016483.1|WP_065715699.1|82509_82863_+|hypothetical-protein
MASLEKKWHVVQLDGENAKIWLPDVYDGIGSAVGITEITPEQAADIANSMGVSEGLKDGQLVRLRLTVRDATTGRSKSARVLCSVTEVRTAISRLPGLTYRGNEVRSAGVPRRRRLG
>NZ_CP016483.1|WP_065715700.1|82926_83286_+|hypothetical-protein
MARFVKHKITVSGVVELEPYDFFFLAPEGSYTGLTTETGVDATLADAEVNMPTCKVEELVKSGKVKRKYLRVRTTGGRTRYIKILHSDQKDTFDADIIGKTVQGRVVEAVVTRQSASFA
>NZ_CP016483.1|WP_157096801.1|83333_83651_+|hypothetical-protein
MNSPPGQFGYEAQIPLSFAADLIIASVINQQEKPWVRGGRVFQAWDRGDIFVFSRNNWINLDTPTLIEVEPVAQSLIRYEPPGWLGPYTLVVEARPYLNPFTYYS
>NZ_CP016483.1|WP_157096802.1|83654_83933_+|hypothetical-protein
MDIGILITVAIASGSTVAALFQQIGAMERRLDQRLDKIELAIATKMPALESRIQRIENNQNQEARSVRAMVSQLEKFAAAVARPVPVSLEES
>NZ_CP016483.1|WP_157096803.1|83935_84739_+|hypothetical-protein
MGQVVVWGNGSTVTGRFKVPAGKTAVSATSEAQSGGIRVDWGGGDVVILPGESWTSEPIQDQTTGALWNHSFPINRGNPVVFTTANYQPPSPTLLIYGISMSAATFVAVVRGFKTQPLNLGGTVYYRMLGSTNWANIETFNARINGGYGGTTEYLQQIAITGPPTTTRFNGSINLQNIGYKVTTDAATSSQRETTTPPTISLESEGCSINIGYFDGNQTINLGGICPGFVRIEDASQCPPGSCSCDHRDYRCCIDSSSGQIIKKIRL
>NZ_CP016483.1|WP_157096804.1|84668_85457_+|glycoside-hydrolase-family-protein
MTIGIIDAALIAAVDKSLKKLGCKKFMFPTTATKLTELNSEQVLALQKSLFLAGYHLTVDGILGPETKQIFAQFKKDAKLTRPSEMGQTTLDALVEAIAENLRTPTDTTKSPAKVDLQLIKKWEGMRLNAYLCPAGVWTIGYGCTYLANGRRVIKGDRLNSKAEAEQLLVQVFSRDFLPKLQAIPHWQEMSAGQQTALASFAWNLGAHFYGNGDFNSITRALKNKDWVGVPRALRLYNRAAGKVNQGLINRREDEVRSWNAR
>NZ_CP016483.1|WP_065709845.1|85446_85665_+|hypothetical-protein
MPDKLLELAHGDGKINLYDWIYFLQAIAPVAISGVCIWALIWGDVSREVASDIKFLLGGSTIATTQVLKRKP
>NZ_CP016483.1|WP_012305712.1|85773_86031_-|TIGR03643-family-protein
MNFEALDEATIDRVIEMAWEDRTTFEAIEMQFGLQEKEVIQIMRRYMKRSSFKMWRKRVTGRNTKHLQKRDFIEGRFRSANQTGS
>NZ_CP016483.1|WP_012305713.1|86090_86927_-|ribosome-biogenesis-GTPase-YlqF
MPQPIQWYPGHIAKAERQLKEQLNRVDVVLEVLDARIPFASHHPQVDEWIGEKPRVVVVNRRDMIPSETLSQWRDWYQAQKIQPVFTDAKKGTGVKGVIKAAQLAGKAMNDRRISRGMRPRPVRAVVMGLPNVGKSALINRLVGKKVVESARKAGVTKQLRWVRISDQIEMLDAPGVIPWKLDDQHNAVKLAICEDIGAASYDNQLVAAAMVDLLVELNLEQHLTERYDLDPLDMSGEDYVIALGDHRFQGDRERSAVTLLNEFRKGILGQIPLELPN

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Crispr_ID: NZ_CP016483_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP016483_2

1993008-1993116

Orphan

Consensus_repeat	Method
GGTTTCAGTCCCGTAATCGGGATTTAGTGGTTGGAAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP016483_2

>merge|NZ_CP016483|2|1993008-1993116|CRISPRCasFinder
GGTTTCAGTCCCGTAATCGGGATTTAGTGGTTGGAAAGTCTTAGGACGCCATGGCACAAAATGGGTTTATCAGGTTTCAGTCCCGTAATCGGGATTTAGTGGTTGGAAA

>NZ_CP016483|2|2|1993008-1993116|CRISPRCasFinder
GGTTTCAGTCCCGTAATCGGGATTTAGTGGTTGGAAA	GTCTTAGGACGCCATGGCACAAAATGGGTTTATCA
GGTTTCAGTCCCGTAATCGGGATTTAGTGGTTGGAAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP016483.1\|WP_065716698.1\|1993919_1996046_-\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|273206
NZ_CP016483.1\|WP_065714349.1\|1991762_1992056_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP016483.1\|WP_065716704.1\|1997687_1997900_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP016483.1\|WP_065716693.1\|1991550_1991766_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP016483.1\|WP_065716688.1\|1987792_1988281_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP016483.1\|WP_065716689.1\|1989382_1990159_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP016483.1\|WP_065716696.1\|1993158_1993569_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP016483.1\|WP_157096851.1\|1990211_1990862_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379908
NZ_CP016483.1\|WP_065716702.1\|1997018_1997219_+\|helix-turn-helix-domain-containing-protein	unknown	unknown	unknown
NZ_CP016483.1\|WP_157096853.1\|1996129_1996348_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP016483.1\|WP_157096850.1\|1985834_1987508_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|224117
NZ_CP016483.1\|WP_065716700.1\|1996334_1996598_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP016483.1\|WP_065716694.1\|1992048_1992753_+\|CHAP-domain-containing-protein	unknown	unknown	gnl\|CDD\|366659
NZ_CP016483.1\|WP_065716703.1\|1997236_1997623_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP016483.1\|WP_065716691.1\|1990865_1991081_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP016483.1\|WP_157096852.1\|1993559_1993709_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP016483.1\|WP_065716692.1\|1991071_1991554_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP016483.1\|WP_065716701.1\|1996763_1997015_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197775
NZ_CP016483.1\|WP_065716697.1\|1993698_1993917_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP016483.1\|WP_065716695.1\|1992794_1993004_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP016483.1\|WP_065716698.1\|1993919_1996046_-\|AAA-family-ATPase	gnl\|CDD\|273206	TIGR00665, DnaB, replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of > 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites. [DNA metabolism, DNA replication, recombination, and repair].	4.10042e-30
NZ_CP016483.1\|WP_157096850.1\|1985834_1987508_-\|hypothetical-protein	gnl\|CDD\|224117	COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning].	7.84241e-05
NZ_CP016483.1\|WP_065716701.1\|1996763_1997015_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|197775	smart00530, HTH_XRE, Helix-turn-helix XRE-family like proteins.	5.22111e-07
NZ_CP016483.1\|WP_065716694.1\|1992048_1992753_+\|CHAP-domain-containing-protein	gnl\|CDD\|366659	pfam01471, PG_binding_1, Putative peptidoglycan binding domain. This domain is composed of three alpha helices. This domain is found at the N or C-terminus of a variety of enzymes involved in bacterial cell wall degradation. This domain may have a general peptidoglycan binding function. This family is found N-terminal to the catalytic domain of matrixins. The domain is found to bind peptidoglycan experimentally.	1.03992e-09
NZ_CP016483.1\|WP_157096851.1\|1990211_1990862_+\|hypothetical-protein	gnl\|CDD\|379908	pfam16963, PelD_GGDEF, PelD GGDEF domain. This degenerate GGDEF domain is found at the C-terminus of PelD, a membrane-bound c-di-GMP-specific receptor. It contains an RXXD motif resembling the allosteric inhibition site found in diguanylate cyclases. In PelD this RXXD motif binds to dimeric c-di-GMP.	0.00358699

>NZ_CP016483.1|WP_065716695.1|1992794_1993004_+|hypothetical-protein
MAKDGLQAADVAYYALLFLPLVTGIVGFYFWGKAILFYPDIPEQRLKPLLWVSCVLMGVPVAGEFWRRK
>NZ_CP016483.1|WP_065716694.1|1992048_1992753_+|CHAP-domain-containing-protein
MIEKILSTARAEIGYKESPPGSNRTKYGRWYGMDGNPWCAMFTSWVYAEAGFPLPKMQDGAPSGAAYCPYIEGYARRVGQWHKTPRPGDLALFHFGNRLAVHIGIVENISGGKFSSIEGNTSAASNANGGMVQRRSRNVSQCRGFYRPLDIQAQIGKSAYFRLIKFRKPYMAGHDVREWQKQVNFWGISIEIDGIYGPESEKACRTLQEKWGLEVDGVIGPITWERTFKPSSEV
>NZ_CP016483.1|WP_065714349.1|1991762_1992056_+|hypothetical-protein
MNEITQILVSLTILIASFWAALKTLLTFWEKWQTVAKSPQQITAELEKVESQLETMWRKFDDLAALTDTRLDSLERKLSYLAGTIRIQIENLEGHRD
>NZ_CP016483.1|WP_065716693.1|1991550_1991766_+|hypothetical-protein
MSCPQIATKEDIAALEGRLIESLHAKIEAEITALEARLVGTGQQVTLGEIRQVIEDSINLPYELEITTLES
>NZ_CP016483.1|WP_065716692.1|1991071_1991554_+|hypothetical-protein
MAVVDSFGVWENLGVVRPTFDWQILPLFTNSPTTALRIIYFSEVPEAGFNARHPWGYLRGVYFSGSSYWFDRNWLRLYPKDEPEILQYPYPPDLMNDPLPQRQYQVKLSDSRYARRLAIDRRWSCQLLEKIDSNVTYPTQEPAPEPASETTRIFRLFRRQ
>NZ_CP016483.1|WP_065716691.1|1990865_1991081_+|hypothetical-protein
MLILPDNPLFDLTLQTARPPGWQNHASEEIAFVVDHATGLMRPATRAEMIDYVEGGEYDERLEAMGEDEWQ
>NZ_CP016483.1|WP_157096851.1|1990211_1990862_+|hypothetical-protein
MARNRETATLVFVTMPLGGGELKYGFRSRLRDSLRDNFGQTVIANGVSIQNLVIGANSPKPARASRRTETGYEGSYCSTNRIAALRADRYSITRAKPSKIQGGNHSDTYFATVNGIKVAFLSNALDSGGRGAAAGFPSQYGVRLATSADTGELVYGAEFPRLPSYSYDLEDGSVFSSKTDPSQANELRNSGGLFKEKDAGFYNQGHFAALYGVTAN
>NZ_CP016483.1|WP_065716689.1|1989382_1990159_+|hypothetical-protein
MALTFFESSVSAGASNGVPAGLFLPIADLPGVVAGEFADSETQATKESKAALAIANAIHTYVSANSADIVGLTSTRAKASVSDSLDNLTFSFSCQYVADLETETIGQIPLPASGANSGVGGFAIDDLFANAAEVAAEGAITGEGVVIPYADLADFGGADPAAITGVDNRDFVAAMIRSMPDLLPIRTASVASGVTTTTRPAGTTFTLAPAATAETDPTTGIAAADLPKLGLLQFTTSWTVQVALDQAAQTFDVNVVTL
>NZ_CP016483.1|WP_065716688.1|1987792_1988281_-|hypothetical-protein
MSENVRQKPAVNWNVGAVGCVVMGRTVGRRSILLFGGLNLMALTLQDFGGQFSPTTITFNIAELNAKLEAAGLPKWDEPRDAIEPLLWVLLRLFYSTQIDFSQVSGVLFDEQSLQNQSRTLRVSRANLSPALLSPSAISARELYTLQFNFVGANDLTDPDLL
>NZ_CP016483.1|WP_157096850.1|1985834_1987508_-|hypothetical-protein
MADHSAALARIEAALDGVNGTVQGFWGALADIFESLVSLIRDPIVSALEAQRSFIDGLFGSLEAFISGLFDGIEAAISGAFDATSTLIREFFGTLRTLLEEAFGSVQTALGGIDGNLDNVLSMLGDLSWDVRRALTEINQLDSALSTIQSGINNLDAGQDALNARIVEVRNGLGVIDGRLASLADVVAAINNRTSDIYGRQTELLNRIADVLGAIASVNSALDALESEVREIYGSINALQGEINGIPGEVWGYGLSCGPAGSAVCRSLSAAEDPEKNFSDDDRQKLDDIKDDLDDLGNELEAIAKVTGVPDFPGKLPKSLLGDDNLKGTEEVESIPQFILWLTKQLDALVGEFPVSIEVTDNDLTQSGNQKQTIQLRNIAEAFAELYGQGVLTTTHQSVQTNGLVRVGTELTSLKVMVAVAQDLIMATTEFLGFKTKQKRRNIDTSFTLKKSGDNNYTLANFLDSDKISYKGYEFDDDDILIEYLPQLMYGVSLIKAATLRGEDDVNEIEDRVKEVLEDGASAWDKFQEIVNNPDSEYNIDQDVKFKITDRDVEIDE
>NZ_CP016483.1|WP_065716696.1|1993158_1993569_-|hypothetical-protein
MPMKRELYPDNWEAIALEIKESVHWFCEKCGRPCRRPGEDWFDFLEKLQSTFPQWYQQYEEEVYDDDTGEWGYIEKRGRFILTVAHLDHNPANCDRQNLKALCAPCHLRNDHSHHLKNASRTRFLKNQVDGQLPLF
>NZ_CP016483.1|WP_157096852.1|1993559_1993709_-|hypothetical-protein
MMSKNIHPVKAIAWAHRHKQQPLLEALILYGYPRLRPLFELLMEDKRCR
>NZ_CP016483.1|WP_065716697.1|1993698_1993917_-|hypothetical-protein
MSKGFGHQSVNKFSLSVWQDPLSRDWNGEFDVEKFNKFSVEEKIKIVAMLMQLIQALCRHPDLEHFNLFDDE
>NZ_CP016483.1|WP_065716698.1|1993919_1996046_-|AAA-family-ATPase
MYSNSLATNKVTPIFSDRSLPPQNLEAEEMILGGILMGGAAALARVKHILEPEAFYVSAHRQIYQEFLKLDQKNLRIDLLTVISTLSAKKKFFETIGGTAKLSLLVDRTVSDVNLDHYADLVQQAFLRRQAIAIAEEVISHAYSRDTPVSDLANVIRDRFTEITASPLVTGEAKSIKLHQCDRLLEKLNHIQLDIDSPTYKEFMLQELARETGRSPAQLQSLFYKSLIEDEWEPTLSLSQLRDKYGDQVREWLLHGFIPKGATTLLHALGGQGKTRLLYDFIYHLALGESWQGFPVTKKAKILIIQTDEQPVDMLAALEVRGIRPDDPRFDIHYKTRWSTEHIPQLYREVQNERYDLILIDSLASVSRFSTVSENDAEFAKPILLLNKIAADFNTAIMLVHHSSKSGDARGTTAVYNAVSQVFQLTKDPQDLNPSSCERILCIQKSRARRPAKYALVFNPEEGSWVCEGEATLTPDPDSSLKEQVSQFLSQHRGVKFGSRDLAEALNFNTNSVRKVLGQLAADGIISWRKQGRSKTYWIDAFEGMVKGRLTDPPMDQVGSVADQFVDQFANPDGAKDVAPTDPLIQKNEKFLRKKSGEKTDQRIRSSKTQSGHKTQTDPPSGSVRISSDQVDQLDQIEKGDRVTVAQGCEIYPKVGILWEAGTILEVLDIGRKGIYSNQLQVKRLGDNSHAAWVPIANIEINHVSKEV
>NZ_CP016483.1|WP_157096853.1|1996129_1996348_-|hypothetical-protein
MNTIEMLLAIVRGYEEILGVEGPSDLPLESRLRALLMTLTHCTRRAENLSEHLQPKQVWADAIAIERARLNR
>NZ_CP016483.1|WP_065716700.1|1996334_1996598_-|hypothetical-protein
MDNPENIELRARHLGNQKGCGTYREYLIGQVLAGAVTSNYLMAEALAAAATKFYPEENWVIETIAERAVSLADAVLLEMARREYEHH
>NZ_CP016483.1|WP_065716701.1|1996763_1997015_+|helix-turn-helix-transcriptional-regulator
MNASRLQQESVTVLKQIREKLDLTQFELASAIGCSLSVVSKAEAGMHEPRFTIEQWVKFQEMLDKANINPKKLPSKLSDKVAI
>NZ_CP016483.1|WP_065716702.1|1997018_1997219_+|helix-turn-helix-domain-containing-protein
MPNSPNSPWFPTSAMAQALGINPKTLIRNRKRFKEGHHYYNANPFGDRPSYRWHHKRIFKTLKVNP
>NZ_CP016483.1|WP_065716703.1|1997236_1997623_+|hypothetical-protein
MTYTIGYTLRSTIDHGALTEEIKVSSSITEEKDLPVELEKLRALAFHASHSDRLYEEIKGRTAKADLDLMDSQRALKKMQQEWNKATEFLKAQGLKEAIPDFPIREAHHYENPKKLASTQISGVEMDL
>NZ_CP016483.1|WP_065716704.1|1997687_1997900_+|hypothetical-protein
MTQRWTDEMLDKLADDVQELAESIKTQRDEQKELTIRFNAYQMASQWVVNLAFGLLATATITTIVTAVIK

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Crispr_ID: NZ_CP016483_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP016483_3

2342354-2342453

Orphan

Consensus_repeat	Method
TGGAGCGAATTCTCAAAATCAAGCA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP016483_3

>merge|NZ_CP016483|3|2342354-2342453|CRISPRCasFinder
TGGAGCGAATTCTCAAAATCAAGCATCATCATGTAAAGGACTTACTGGGCAGGAGCGGTCTCAATGTGAGTCTGGTGGAGCGAATTCTCAAAACCAAGCA

>NZ_CP016483|3|3|2342354-2342453|CRISPRCasFinder
TGGAGCGAATTCTCAAAATCAAGCA	TCATCATGTAAAGGACTTACTGGGCAGGAGCGGTCTCAATGTGAGTCTGG
TGGAGCGAATTCTCAAAACCAAGCA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP016483.1\|WP_065716872.1\|2344292_2346731_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP016483.1\|WP_012307839.1\|2337422_2338196_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223912
NZ_CP016483.1\|WP_030007319.1\|2347601_2347832_+\|DUF2811-domain-containing-protein	unknown	unknown	gnl\|CDD\|371302
NZ_CP016483.1\|WP_065716877.1\|2352869_2353337_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|182099
NZ_CP016483.1\|WP_065716864.1\|2332722_2333547_+\|peptidase-M10A-and-M12B-matrixin-and-adamalysin	unknown	unknown	gnl\|CDD\|227836
NZ_CP016483.1\|WP_041443595.1\|2349474_2349723_+\|DUF5340-domain-containing-protein	unknown	unknown	gnl\|CDD\|375096
NZ_CP016483.1\|WP_065716876.1\|2349901_2352775_+\|DEAD/DEAH-box-helicase	unknown	unknown	gnl\|CDD\|226947
NZ_CP016483.1\|WP_062435414.1\|2332463_2332706_+\|preprotein-translocase-subunit-SecG	unknown	unknown	gnl\|CDD\|377143
NZ_CP016483.1\|WP_065716870.1\|2342724_2343180_+\|type-II-secretion-system-protein	unknown	unknown	gnl\|CDD\|225076
NZ_CP016483.1\|WP_012307843.1\|2339814_2340918_-\|aromatic-ring-hydroxylating-dioxygenase-subunit-alpha	unknown	unknown	gnl\|CDD\|226985
NZ_CP016483.1\|WP_071932322.1\|2334912_2336013_-\|acyl-CoA/acyl-ACP-dehydrogenase	unknown	unknown	gnl\|CDD\|376923
NZ_CP016483.1\|WP_065716866.1\|2336197_2337154_+\|ParA-family-protein	unknown	unknown	gnl\|CDD\|224113
NZ_CP016483.1\|WP_065716865.1\|2333647_2334691_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|274008
NZ_CP016483.1\|WP_012307842.1\|2339412_2339805_+\|NINE-protein	unknown	unknown	gnl\|CDD\|225196
NZ_CP016483.1\|WP_065716875.1\|2348436_2349432_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|223469
NZ_CP016483.1\|WP_065716874.1\|2347847_2348468_+\|aminoacyl-tRNA-hydrolase	unknown	unknown	gnl\|CDD\|235457
NZ_CP016483.1\|WP_065716867.1\|2338199_2338973_-\|HAD-family-hydrolase	unknown	unknown	gnl\|CDD\|366257
NZ_CP016483.1\|WP_065717365.1\|2338972_2339290_-\|DUF1825-family-protein	unknown	unknown	gnl\|CDD\|370158
NZ_CP016483.1\|WP_065716878.1\|2353412_2353787_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP016483.1\|WP_065716871.1\|2343130_2344249_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|227301

Protein	Function_ID	Function_description	E-value
NZ_CP016483.1\|WP_065716877.1\|2352869_2353337_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|182099	PRK09831, PRK09831, GNAT family N-acetyltransferase.	2.92059e-21
NZ_CP016483.1\|WP_012307839.1\|2337422_2338196_+\|ABC-transporter-permease	gnl\|CDD\|223912	COG0842, COG0842, ABC-type multidrug transport system, permease component [Defense mechanisms].	5.2111e-14
NZ_CP016483.1\|WP_030007319.1\|2347601_2347832_+\|DUF2811-domain-containing-protein	gnl\|CDD\|371302	pfam10929, DUF2811, Protein of unknown function (DUF2811). This is a bacterial family of uncharacterized proteins.	3.92352e-30
NZ_CP016483.1\|WP_065716864.1\|2332722_2333547_+\|peptidase-M10A-and-M12B-matrixin-and-adamalysin	gnl\|CDD\|227836	COG5549, COG5549, Predicted Zn-dependent protease [Posttranslational modification, protein turnover, chaperones].	1.34892e-36
NZ_CP016483.1\|WP_041443595.1\|2349474_2349723_+\|DUF5340-domain-containing-protein	gnl\|CDD\|375096	pfam17275, DUF5340, Family of unknown function (DUF5340). This family of unknown function can be found in Cyanobacteria.	3.10259e-33
NZ_CP016483.1\|WP_065716876.1\|2349901_2352775_+\|DEAD/DEAH-box-helicase	gnl\|CDD\|226947	COG4581, COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair].	0
NZ_CP016483.1\|WP_062435414.1\|2332463_2332706_+\|preprotein-translocase-subunit-SecG	gnl\|CDD\|377143	pfam03840, SecG, Preprotein translocase SecG subunit.	9.34631e-14
NZ_CP016483.1\|WP_065716870.1\|2342724_2343180_+\|type-II-secretion-system-protein	gnl\|CDD\|225076	COG2165, PulG, Type II secretory pathway, pseudopilin PulG [Cell motility and secretion / Intracellular trafficking and secretion].	9.40765e-05
NZ_CP016483.1\|WP_012307843.1\|2339814_2340918_-\|aromatic-ring-hydroxylating-dioxygenase-subunit-alpha	gnl\|CDD\|226985	COG4638, HcaE, Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases, large terminal subunit [Inorganic ion transport and metabolism / General function prediction only].	6.91071e-64
NZ_CP016483.1\|WP_071932322.1\|2334912_2336013_-\|acyl-CoA/acyl-ACP-dehydrogenase	gnl\|CDD\|376923	pfam02771, Acyl-CoA_dh_N, Acyl-CoA dehydrogenase, N-terminal domain. The N-terminal domain of Acyl-CoA dehydrogenase is an all-alpha domain.	8.25361e-14
NZ_CP016483.1\|WP_065716866.1\|2336197_2337154_+\|ParA-family-protein	gnl\|CDD\|224113	COG1192, Soj, ATPases involved in chromosome partitioning [Cell division and chromosome partitioning].	2.21795e-49
NZ_CP016483.1\|WP_065716865.1\|2333647_2334691_+\|hypothetical-protein	gnl\|CDD\|274008	TIGR02168, Chromosome_partition_protein_Smc, chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins].	1.88975e-10
NZ_CP016483.1\|WP_012307842.1\|2339412_2339805_+\|NINE-protein	gnl\|CDD\|225196	COG2314, XynA, Predicted membrane protein [Function unknown].	1.5908e-11
NZ_CP016483.1\|WP_065716875.1\|2348436_2349432_+\|hypothetical-protein	gnl\|CDD\|223469	COG0392, COG0392, Predicted integral membrane protein [Function unknown].	0.00323102
NZ_CP016483.1\|WP_065716874.1\|2347847_2348468_+\|aminoacyl-tRNA-hydrolase	gnl\|CDD\|235457	PRK05426, PRK05426, peptidyl-tRNA hydrolase; Provisional.	9.34039e-105
NZ_CP016483.1\|WP_065716867.1\|2338199_2338973_-\|HAD-family-hydrolase	gnl\|CDD\|366257	pfam00702, Hydrolase, haloacid dehalogenase-like hydrolase. This family is structurally different from the alpha/beta hydrolase family (pfam00561). This family includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure of the family consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of Pseudomonas sp. (S)-2-haloacid dehalogenase 1. The rest of the fold is composed of the core alpha/beta domain. Those members with the characteristic DxD triad at the N-terminus are probably phosphatidylglycerolphosphate (PGP) phosphatases involved in cardiolipin biosynthesis in the mitochondria.	4.87908e-05
NZ_CP016483.1\|WP_065717365.1\|2338972_2339290_-\|DUF1825-family-protein	gnl\|CDD\|370158	pfam08855, DUF1825, Domain of unknown function (DUF1825). This uncharacterized family of proteins are principally found in cyanobacteria.	1.13362e-48
NZ_CP016483.1\|WP_065716871.1\|2343130_2344249_+\|hypothetical-protein	gnl\|CDD\|227301	COG4966, PilW, Tfp pilus assembly protein PilW [Cell motility and secretion / Intracellular trafficking and secretion].	5.47603e-05

>NZ_CP016483.1|WP_012307843.1|2339814_2340918_-|aromatic-ring-hydroxylating-dioxygenase-subunit-alpha
MHNRHPQAVASSNSVTPQKLDVRACGINKNHWYVAARSAELTDQPLGFTLWNEDFVLYRDQAGQVQALEDRCPHRQVKLSSGQVVGDNLECAYHGWQFDASGTCAHVPYLAENQKRPACKIRTLPVREQDGFIWVFPGDPERLTDEAIQPLPIPEWEHLNYIVSVTTIDCEGHFSYLIENLMDMYHGHLHDNYQAWASAKLEDIQVTEQRVDAHYEAQSYYKIDKIWSISQLFFPALRKLHPEPLDVSYVYPNWSATLGNDFKIMCLFCPTHSSRTRAYLLHFTSLNAFWRLHKLPVPFRRWVKDLCFNAAKGLLDGLVEQDVLMIEQEQRAYLENPQRQNVELNRALMAVQRLIKQQAIAQDQTSA
>NZ_CP016483.1|WP_012307842.1|2339412_2339805_+|NINE-protein
MKQAIAKFLTQPKDRKVAVGLALLGSVTPLSGVHKFYVGQPVWGVVYILLWSTPIPQIACAIEAVWYLLQDFDSFQARFGLTKAPASDQAIAAVQQTAAIAEALRELEKLRVEGLITEYEFEQKRRQLLS
>NZ_CP016483.1|WP_065717365.1|2338972_2339290_-|DUF1825-family-protein
MGFFDSEIVQQEAKTLFEDYQNLVQLGGDFGKFDREGKKMYIDQMESVMDRYKIFMKRFELSDDFMAQMAVEQMKTQLGQFGMTPQQMFDQMNLTLERMKAQIPD
>NZ_CP016483.1|WP_065716867.1|2338199_2338973_-|HAD-family-hydrolase
MAAKTIIAFDFDGVICDGRPEYFHSASLGYQKIWPDEPITPTATLQGSFNDLRPLIETGWEMIILLRALQQGIPTVQLWQAWSDIVQRTLQQENLSATQLMEALDQVRDRQLQTQLDQWLGRHYFYPGMVALLQNLLQQNDVTPYIITTKEARFTRQLLQHQNVDFPASQIFGKEQKQPKTTTLKQLLSPEVETFLFIEDRLKTLEKVQQQPELSTLQLFLADWGYNTAPERSSATQQGIPVVNLSQWVQAVTEKIS
>NZ_CP016483.1|WP_012307839.1|2337422_2338196_+|ABC-transporter-permease
MKYWYETIAVSQRILLELWRRRRSLIFWILFPVSLLFLNGFILAERAGLSLAEAMEFAAPSTLVGAALFFSCLGGSIATVVSEREQHTLKRLFISPLSGTAYFLGIFLAHCLIGIGQALLVFAIAIFVGATFTGSVLVGIGIIFLSIIAYVGVGFILGTQLAKRTEDVNALVATFGVPLLILGGAFLPTSLFPEALLNAAQYNPIFHMNEALVGLWAEGETIGAIANHLWFLGIFALAMIGGGWLSYRRMIQVERQL
>NZ_CP016483.1|WP_065716866.1|2336197_2337154_+|ParA-family-protein
MALIISTVNMKGGVGKTTLTVNLAACLARHHKKRVLVVDLDSQISATLSLMPPQDFARIRKGRRTISHLIEMAIKPTLQQSLDINDIICPYIANVQGLDLLPGDIELYDEYLVSEMLHQKAHKDPSLDFQAIWNNFELVLIRKILAPVMDKYDFIIMDCAPGYNLVTRSGLAASDFYILPARPEPLSVVGIQLLQRRIRALRDSHQDTDPRNIDPIKLDLLGIVFILSGGSLLNRYYNQVMKRVSDDFTSTQIFKYKIPMDVNVAKALDTFQPVVVSMPNTAGAKAFMKLTEEFLAKLKEAGGLAEQRPSRINLADIE
>NZ_CP016483.1|WP_071932322.1|2334912_2336013_-|acyl-CoA/acyl-ACP-dehydrogenase
MGQFTWENLAEYLRLSIAPQAEKLDQDPLALGRALDDLGDRHLLALRVPENLGGSGLSTVEYYQATVAMAAASGALAFLQTQHQSAASRIARFGNSEQQRLLPQMARGDVQIGVGFSHLRRRGEPAVQAMPQGDRYCLTGTIPWVTGYGFFQQAIAGATLPDGSEWYGLIPLETCQQSEQGEIFCSQPLPLAAMGVSQTVAVKLQNWLVPTTDVLVIQPPGTIHKGDRQQVLHHGFFALGCARGVLDWLVTTECDDLAALEDHWQTLHDQLFRAIEELQTESFQTQLALRLSVIQMAQTFAQIALTWSGGAGNLLTSPAQRLYREAMMYSIFGQTQAIRAAMVKSLLPGKSSGYTVKSNYAGVVQW
>NZ_CP016483.1|WP_065716865.1|2333647_2334691_+|hypothetical-protein
MAKKKRKTTGKNAVTLSLTSQAIDRLAEMAQKSGFSRSAFVENLMAGTVSITAPEAEKNLLVSVENEAEDTAKVQVDLAETTAANNAPTAPDPDAELAEKVASQAKIIADLEAKLAEASPPLKRPVARPNTAEKSAPAVTDQSPKIATLEKQIAEQKNQVQDLTKQLNESAKNLAVTNEKNKALQQELDQVTTQFETIQGENKTLVQTLESQKAEIAQLQQQGVAAQQAQTEQTQLQERLTALQQETATLQQQLQAASTAEATLQSQMTQQRQAIAQLEQALQSSRAQIAAQADQAQAIASLKQAHADLQQQYKLQGDRLRALEAQTHQTTGVASIGEFYLNRWRKY
>NZ_CP016483.1|WP_065716864.1|2332722_2333547_+|peptidase-M10A-and-M12B-matrixin-and-adamalysin
MDDIFRAWRRHLWGWRFWFGLLGGLAIALGIQWGSYGLGPELLTRLPQAQIHPLPEVLQGTPDPITAADYFEAVTPSPLGHLIWSEFPVKVYVAPLDLTVSPAAQQRQQQWQRATFAAIAQWQAYIPLLTVETIETADIIIQRQAPPIQRETDPETGEIRYSLGRNAETRYEFYIDDQNILRHRMTILLNDHQGAIATQNTACHELGHALGIWGHSPNAADALFPRQMGTQARISAADINTLRKIYQQPTRLGWPMPPFANKKLADPHSLKEGQ
>NZ_CP016483.1|WP_062435414.1|2332463_2332706_+|preprotein-translocase-subunit-SecG
MLESILQIVWMVSAVGLVLLVLLHSPKGDGLGGIGGQAQMFTSTKSAETALNRATWILCITFMSLTVILSAGWLTPVVGQ
>NZ_CP016483.1|WP_065716870.1|2342724_2343180_+|type-II-secretion-system-protein
MFNYNPVKIHQQLLLKKHCSKGFSLIEAMAALAVFTIIFAVSAPLFFTQQKSNIDSEVRTGAVSLSQQILDTIRADISIPKKVEDKPGRSLGKEYNYNLYICTKEIETTDDGSIDCSIEKDPSNPIRYILLEVEYNENKVYTVETVYTALR
>NZ_CP016483.1|WP_065716871.1|2343130_2344249_+|hypothetical-protein
MKTKFIQWKPSTLPFDKSALKLYLNLLTFQKRKSKDGFTLAELLVGLSIGFLVVSLALFGSLLNRQVFVNDKARSDITQALRLPLDAIGGDVRQAGEGLTTSDPNFPVILLDTNPTELVIRRQLLPASMPVCQDIKAGSRDDIVILDQNGDETPFPGCEVVLASDINNDGWPDRWDNIRNYRLIEGGKVRAFIYNGNGKGEFFDYQNELLFDEDNNEVTNSEDLEYIVLGNGSEGTWKNDYNADSSSRIYLIEERRYQIDDENNILQLVINDDNENILNLTNDISLLEVKAVIVQEDETYNCLIIPPVSDDDCSEELPNDYSWSQIRSIEITLQVDPESSAARTLQRRCEDPNNCEALQLSRSFVPRNIFNY
>NZ_CP016483.1|WP_065716872.1|2344292_2346731_+|hypothetical-protein
MNTLLKLVYFLNFTTVSKSLKTKNQQEDGYVFFVVLVICLSTLALLTAYARITQTEKFRSNASADTNSAFYAAEASLNLRVEGIRQTFTGYNTPSGAPPESVEACLDDNSNNDGSGDFGCEIETFRQSSRDQSPFESASYIIAKNGGEPRPGIVPRGELFQNLSMLEYAFAIHSVAKETAAPSSELGASLKMDITSRLIPMFQFAAFYANDLEILPGPTMNLQGPVHTNGSLYLGANNNNGLNLPEQVTVGGSLFNRRKNNNDTYPDGRVRIRDAAGNWLNLLRNGTGSTNQTTSAMDPDRVQAAWGTQVQVGVDPVIIPSPSFLDTSGAYYQKADLRIEYKPAATSSNNYLQKVPFEIQVRDSAGTYRDLTEGQLRSLRQPVMLGNDLKNADYCSALSSPNISSITSNNEEKGKIIESLQTAIAAQVEPIQFSKLDSKINDLGNLKNAFKTTVETRLGISLTQSQQNTLFNLTPKQVAAISYKDSNNIEQGQRCFLPAPIRDIGRDNSSHNSTYRFYNDREGRDMRLLQFDFESLAAWNRDGIYVDFNNNQGNLDQYEKADELLFERADPDNSAPNKSFQKLGLAAQDESEGGLVFHGTIDQDEYSKAKTSDSPYGFILSGGEQLMALSSTANNRNPTGLTFASDQAVYVQGNYNTVNKQPASVLADSLNVLSEACRNQDGLVNKVSGRGCNPDINNPGGNKANAVNTEINSAFLANTDITNSAATSGYNGGLENYPRFSENWGGRTLRYRGSFVSLGTPRYVSGTWSSQLYGAPNRDWEYDTSFNEYGALPPLSPRFIHVKQSAFERYLD
>NZ_CP016483.1|WP_030007319.1|2347601_2347832_+|DUF2811-domain-containing-protein
MNPTVSILAEIPEALHQSLTDYLETHPNWDQDRVFAAALSQFLLQTGEGQTPREAENYRTCARVYLETLFEQSKSY
>NZ_CP016483.1|WP_065716874.1|2347847_2348468_+|aminoacyl-tRNA-hydrolase
MGQDKPLVIPQLIVGLGNPEPKYDHTRHNIGFEFVDRLAADWGATLQDHRKFQGVWAEVRRNGQKLGLLKPTTYMNRSGQSLRAVIDWYKIPPESVLVVYDDMDLPLGRLRLRLQGSAGGHNGIKSIISHLGTQKFPRLRIGIGKTQLKGDRPTISHVLGKFAPAEKPVLNDVLGLAEEALALSLREGVEKAMSLYNARSVESSQS
>NZ_CP016483.1|WP_065716875.1|2348436_2349432_+|hypothetical-protein
MPAVLNRVSHKGIAGILKGKLSRLKPYLRWFIVGLTLFFLLATLRNHWQEVAQIRLDRRGWLLVGASVLVTTSSHIWSALVWGRILTLFRVPLGYGEAIALYLRTNMAKYLPGNIWHFYGRMTRIVAVGSPWGVASLAVLLEPLLLAAAAAIAMVLGLGFSLAQLEQLPLLKLLVPLGLIGVLGGIHPYFFNPVIQKVSQGKTQDHDPVQLNIYPWQPLLGELVFIGLRGTGFLLTWWAIAPLSASQIPQLLGVFSGAWLAGFIIPGAPGGLGVFEVVALALLETVGNTNAGVGSLLTIVALMRGVSILAEILPLGIWGWRSPVQKLPPKL
>NZ_CP016483.1|WP_041443595.1|2349474_2349723_+|DUF5340-domain-containing-protein
MEPLPLPSHIHYETILQILERKAQRVAAKDPMTQTQIQQLILTLRKAFSQQKQLERSCDQLRIPYEYHWSLSNQTPDHSPEA
>NZ_CP016483.1|WP_065716876.1|2349901_2352775_+|DEAD/DEAH-box-helicase
MQVDLNQVFPFQLDQFQKQAIAALDADRSVVVCAPTGSGKTVIGEYAIHRALAMGQRVFYTTPLKALSNQKFRDFGETFGEKQVGLITGDIIINAQATIVVMTTEIFRNMLYETPIGQVGTSLENVSTVVLDECHYISDRGRGTVWEESIIYCPSEIQIVGLSATIGNPEIFTAWINRTRQAAHEDHPNSKEHRCELVDSDHRPVPLEFLYSNKKGLYPLLDQGGSKMNSRLRSRTNAPQGKRKKRQREDCPSLFAIVRQLRQKDLLPAIYIIFSRRGCDRSVTQLNDITLVSPEEAKLLEATLLHFFLDNQGKLQEKLLNQCDDTPEFKALVLDFIAKNPFSTEKLVDYLQENLPLREQLWQYLAQQSKFARPEQVEPLLRGIAAHHAGILPAWKELVEKLFEMGLVKLVFATATLAAGINMPARTTVISALSKRTDEGHRMLTPSEFLQMAGRAGRRGMDKVGYVVTVETPFEGAKEASRLALSSAEPLRSWFTPSYGMVLNLLQKHSLEESKELLSRSFAEYQVQQQLSPEQEAIAELTTEIARLDIDLAAFDERQFERYSKLKERLKEEERLLGILREQAELENRKLLAPLLDQLPLGSILHLKGKNLRVKEAVPAVLVEQTEEQQFLCLGTDKRWYLIKETDVVALNEGLFPADQLAQIPLPIDQNLTLGKNGKIDPEAFPLVAAIADYLLPLTEAPEVEAQKQRFAAVQAKFAASPLSQQDKPGKLLKRHQRRKDLRKELNRRQTLYRQHANKRSYYWQDFLNLIEVLQEFRALDGYTPTVLGRTAATIRGENELWLALCLLSGQLDHLAPEHLAAAICAIISEPPRGDSWTDYSQPNAVLEVLGIRKKDQGHNPVSLWELRRQLYQVQKHCGVTMPVWLESKFIGLVEQWALGVEWTELCENTSLDEGDIVRMLRRTVDVLWQIPQIPEIKPVLMRTAKEAIAKMKRFPV
>NZ_CP016483.1|WP_065716877.1|2352869_2353337_+|GNAT-family-N-acetyltransferase
MVTIRPFQTQDIPAIAQLFHDTVHTVNAQDYSPAQLRAWAPDDLYFRDWETRCHACFTYIAEEDKQILGFAELSPAGHIGCFYCHKDHQRRGIGRQLYQALFAQADQLQLSTLTVEASITAKPFFVALGFRILQEQQVQRHQQTLTNYRMIKHLR
>NZ_CP016483.1|WP_065716878.1|2353412_2353787_-|hypothetical-protein
MTTENSTSTPANDSTTKSSTRSRSTAKKDEVVALSVKEPAKLGLPNNRPIEPSHLKVTSTYRSVGGDRPVTAGTMDISSTMTVSGNRPIMASHLQVSDTIVIMGNRPVAPNETDDMATLIGYLD

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

2441802 : 2451816

Tupanvirus(20.0%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_065716933.1\|2441802_2443728_+	NAD-dependent epimerase/dehydratase family protein	A0A2K9KZK0	Tupanvirus	4.8e-33	47.5
WP_065716934.1\|2443767_2445117_+	UDP-glucose/GDP-mannose dehydrogenase family protein	A0A127AXI2	Bacillus_phage	2.3e-74	37.1
WP_065716935.1\|2445128_2446355_-	exonuclease subunit SbcD	G3MA97	Bacillus_virus	8.9e-25	25.2
WP_065716936.1\|2446427_2447906_+	hypothetical protein	L7TN10	Rhizobium_phage	8.2e-17	44.9
WP_065716937.1\|2447902_2448745_+	type I methionyl aminopeptidase	NA	NA	NA	NA
WP_065716938.1\|2448803_2450183_+	DUF3370 domain-containing protein	NA	NA	NA	NA
WP_065716939.1\|2450211_2451816_+	type I restriction-modification system subunit M	A0A2H4PQP4	Staphylococcus_phage	2.7e-170	57.9

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP016489

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP016483

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection