CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP016503	Helicobacter sp. MIT 01-6242 chromosome, complete genome	2 crisprs	WYL,cas3,cas9,cas1,cas2,DEDDh	0	1	4	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP016503_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP016503_1

220696-221099

Orphan

Consensus_repeat	Method
CTCATATNTNTNACATTNCTNACATNCCA	CRT

5 spacers

The CRISPR arrays of NZ_CP016503_1

>merge|NZ_CP016503|1|220696-221099|CRT
CTCATATCTCTTACATTGCTTACATTCCACTTATCCAGAGGCTGATTAAACTTTTCTGTATGAGCAAACATCTTGCTCATATCTCTTACATTGCTTACATTCCAATTCTCTAAGGGTTGATTGAATGAGTATGCACCACAAAACATTGAATCCATATTGATGACACTTAAGACATTCCACTTATCCAGAGGCTGATTAAACTTTTCTGTATGAGCAAACATCTTGCTCATATCTCTTACATTGCTTACATTCCAATTCTCTAAGGGTTGATTGAATGCTTTTGCATAGCCAAACATCTCTCTCATATTTTCCACATTGCTCACATCCCAATTCTCTAGGGGTTGATTGAAGGTTTCGCTCCAACAAAACATTTTACTCATATCTCTTACATTACTCACATCCCA

>NZ_CP016503|1|1|220696-221099|CRT
CTCATATCTCTTACATTGCTTACATTCCA	CTTATCCAGAGGCTGATTAAACTTTTCTGTATGAGCAAACATCTTG
CTCATATCTCTTACATTGCTTACATTCCA	ATTCTCTAAGGGTTGATTGAATGAGTATGCACCACAAAACATTGAA
TCCATATTGATGACACTTAAGACATTCCA	CTTATCCAGAGGCTGATTAAACTTTTCTGTATGAGCAAACATCTTG
CTCATATCTCTTACATTGCTTACATTCCA	ATTCTCTAAGGGTTGATTGAATGCTTTTGCATAGCCAAACATCTCT
CTCATATTTTCCACATTGCTCACATCCCA	ATTCTCTAGGGGTTGATTGAAGGTTTCGCTCCAACAAAACATTTTA
CTCATATCTCTTACATTACTCACATCCCA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP016503.1\|WP_066338565.1\|223886_224411_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP016503.1\|WP_083985957.1\|214610_215537_+\|polyprenyl-synthetase-family-protein	unknown	unknown	gnl\|CDD\|223220
NZ_CP016503.1\|WP_066338532.1\|209655_214020_+\|autotransporter-outer-membrane-beta-barrel-domain-containing-protein	unknown	unknown	gnl\|CDD\|377133
NZ_CP016503.1\|WP_066338574.1\|227080_227971_+\|septal-ring-lytic-transglycosylase-RlpA-family-protein	unknown	unknown	gnl\|CDD\|223868
NZ_CP016503.1\|WP_066338534.1\|214029_214251_+\|DUF2018-family-protein	unknown	unknown	gnl\|CDD\|370493
NZ_CP016503.1\|WP_066338559.1\|223340_223868_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP016503.1\|WP_066338545.1\|218499_219435_+\|hydroxymethylbilane-synthase	unknown	unknown	gnl\|CDD\|234612
NZ_CP016503.1\|WP_066338539.1\|215536_216838_+\|glutamyl-tRNA-reductase	unknown	unknown	gnl\|CDD\|234592
NZ_CP016503.1\|WP_066338548.1\|221886_222105_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP016503.1\|WP_066338530.1\|208174_209614_+\|replicative-DNA-helicase	unknown	unknown	gnl\|CDD\|236278
NZ_CP016503.1\|WP_066338543.1\|218084_218525_+\|FxsA-family-protein	unknown	unknown	gnl\|CDD\|377238
NZ_CP016503.1\|WP_066338536.1\|214243_214621_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP016503.1\|WP_066338571.1\|225142_225901_+\|TatD-family-hydrolase	unknown	unknown	gnl\|CDD\|238635
NZ_CP016503.1\|WP_066338527.1\|207737_208010_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP016503.1\|WP_066338568.1\|224546_225062_-\|DUF386-family-protein	unknown	unknown	gnl\|CDD\|225345
NZ_CP016503.1\|WP_066338557.1\|222782_223322_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP016503.1\|WP_066338577.1\|227967_228465_+\|HAD-IIIA-family-hydrolase	unknown	unknown	gnl\|CDD\|224692
NZ_CP016503.1\|WP_066338550.1\|222374_222773_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP016503.1\|WP_066338541.1\|216850_218083_+\|proline--tRNA-ligase	unknown	unknown	gnl\|CDD\|237059
NZ_CP016503.1\|WP_066341730.1\|225989_227084_+\|lytic-transglycosylase-domain-containing-protein	unknown	unknown	gnl\|CDD\|381615

Protein	Function_ID	Function_description	E-value
NZ_CP016503.1\|WP_066338571.1\|225142_225901_+\|TatD-family-hydrolase	gnl\|CDD\|238635	cd01310, TatD_DNAse, TatD like proteins; E.coli TatD is a cytoplasmic protein, shown to have magnesium dependent DNase activity.	2.72985e-93
NZ_CP016503.1\|WP_066338532.1\|209655_214020_+\|autotransporter-outer-membrane-beta-barrel-domain-containing-protein	gnl\|CDD\|377133	pfam03797, Autotransporter, Autotransporter beta-domain. Secretion of protein products occurs by a number of different pathways in bacteria. One of these pathways known as the type V pathway was first described for the IgA1 protease. The protein component that mediates secretion through the outer membrane is contained within the secreted protein itself, hence the proteins secreted in this way are called autotransporters. This family corresponds to the presumed integral membrane beta-barrel domain that transports the protein. This domain is found at the C-terminus of the proteins it occurs in. The N-terminus contains the variable passenger domain that is translocated across the membrane. Once the passenger domain is exported it is cleaved auto-catalytically in some proteins, in others a different protease is used and in some cases no cleavage occurs.	4.92217e-10
NZ_CP016503.1\|WP_066338574.1\|227080_227971_+\|septal-ring-lytic-transglycosylase-RlpA-family-protein	gnl\|CDD\|223868	COG0797, RlpA, Lipoproteins [Cell envelope biogenesis, outer membrane].	1.34427e-62
NZ_CP016503.1\|WP_066338534.1\|214029_214251_+\|DUF2018-family-protein	gnl\|CDD\|370493	pfam09442, DUF2018, Domain of unknown function (DUF2018). Acid-adaptive protein possibly of physiological significance when H.pylori colonises the human stomach, which adopts a unique four alpha-helical triangular conformations. The biologically active form is thought to be a tetramer. The protein is expressed along with six other proteins, some of which are related to iron storage and haem biosynthesis.	1.15052e-12
NZ_CP016503.1\|WP_066338545.1\|218499_219435_+\|hydroxymethylbilane-synthase	gnl\|CDD\|234612	PRK00072, hemC, porphobilinogen deaminase; Reviewed.	8.10105e-147
NZ_CP016503.1\|WP_066338539.1\|215536_216838_+\|glutamyl-tRNA-reductase	gnl\|CDD\|234592	PRK00045, hemA, glutamyl-tRNA reductase; Reviewed.	5.41706e-134
NZ_CP016503.1\|WP_066338530.1\|208174_209614_+\|replicative-DNA-helicase	gnl\|CDD\|236278	PRK08506, PRK08506, replicative DNA helicase; Provisional.	0
NZ_CP016503.1\|WP_066338543.1\|218084_218525_+\|FxsA-family-protein	gnl\|CDD\|377238	pfam04186, FxsA, FxsA cytoplasmic membrane protein. This is a bacterial family of cytoplasmic membrane proteins. It includes two transmembrane regions. The molecular function of FxsA is unknown, but in Escherichia coli its over-expression has been shown to alleviate the exclusion of phage T7 in those cells with an F plasmid.	1.39028e-12
NZ_CP016503.1\|WP_066341730.1\|225989_227084_+\|lytic-transglycosylase-domain-containing-protein	gnl\|CDD\|381615	cd16894, MltD-like, Membrane-bound lytic murein transglycosylase D and similar proteins. Lytic transglycosylases (LT) catalyze the cleavage of the beta-1,4-glycosidic bond between N-acetylmuramic acid (MurNAc) and N-acetyl-D-glucosamine (GlcNAc). Membrane-bound lytic murein transglycosylase D protein (MltD) family members may have one or more small LysM domains, which may contribute to peptidoglycan binding. Unlike the similar "goose-type" lysozymes, LTs also make a new glycosidic bond with the C6 hydroxyl group of the same muramic acid residue. Proteins similar to this family include the soluble and insoluble membrane-bound LTs in bacteria, the LTs in bacteriophage lambda, as well as the eukaryotic "goose-type" lysozymes (goose egg-white lysozyme; GEWL).	1.50112e-55
NZ_CP016503.1\|WP_083985957.1\|214610_215537_+\|polyprenyl-synthetase-family-protein	gnl\|CDD\|223220	COG0142, IspA, Geranylgeranyl pyrophosphate synthase [Coenzyme metabolism].	1.46059e-65
NZ_CP016503.1\|WP_066338568.1\|224546_225062_-\|DUF386-family-protein	gnl\|CDD\|225345	COG2731, EbgC, Beta-galactosidase, beta subunit [Carbohydrate transport and metabolism].	1.01711e-14
NZ_CP016503.1\|WP_066338577.1\|227967_228465_+\|HAD-IIIA-family-hydrolase	gnl\|CDD\|224692	COG1778, COG1778, Low specificity phosphatase (HAD superfamily) [General function prediction only].	1.42575e-57
NZ_CP016503.1\|WP_066338541.1\|216850_218083_+\|proline--tRNA-ligase	gnl\|CDD\|237059	PRK12325, PRK12325, prolyl-tRNA synthetase; Provisional.	6.47454e-173

>NZ_CP016503.1|WP_066338545.1|218499_219435_+|hydroxymethylbilane-synthase
MKKVIIGTRGSALALWQAHYIAKRLLEECQLESEIKIVQTKGDKILDTPLSKIGGKGLFTKELEELLLHKEIDLAVHSLKDVPVVLPDGLNLCAITEREDVRDCFLSLHYGSIAELPQGARVGTTSLRRTMQVKSMRQDLQTQSLRGNVQTRLKRLENGEFEGIILASAGLKRLGIQGEIPFCHFLSTQEMLPAMGQGALGLESHQDSPFNAYFAMLNDPQTALLCGCEREFVKRLDGGCQVPIGVYAMMEDEAIVLEAKIGLPSGGQMLRSKIKGQNAKEIATKLADEFLAQGAREILQKAQEWDFSATI
>NZ_CP016503.1|WP_066338543.1|218084_218525_+|FxsA-family-protein
MRVFWFLVFYFFLELGGFVAFSHYFGFLNLVLEIILSAFVGIWLLKKVFLLDGSSISDFFREIKSPRDLLVSNLSKTLGAILIILPGVFGDCVGVALQIGVFDGVIIGLLSKFFVDTSTRRDEDADIIDAEIIYEEDTDEKSHHRH
>NZ_CP016503.1|WP_066338541.1|216850_218083_+|proline--tRNA-ligase
MKMSESFIYTSKETPKDAELKSHQFLVRAGYIQQVGAGIYNLLPLGLSVLENIKTIIRKHLNDAGAQELVLGFVTPASFWQKSGRYEQYGKELLRIKDRKDQDFVLGPTYEEAIVECVRGRIASYKQLPINLYQIHLKFRDELRARFGLIRGREFVMKDAYSFHSTQEDLDREFLVMEEAYRKIFDELGIRYVVVEADSGAIGGSGSKEFMLLASCGEDTLVTCECGYASNIEVAKIGEDDKCCKCGSTLRYEKGIEIGHIFKLGDKYSKPMNATFLDQQGKAQPFVMGCYGIGVSRLIAGIAEQMSDDKGLCWNSNIAPFEKLILISNIKDERQREVGLSLYHHLRAKGERVLLDDRNERFGVKISDFELLGIPEALVVGKDLENGQVELINRKDSNRLRLEIDTILGA
>NZ_CP016503.1|WP_066338539.1|215536_216838_+|glutamyl-tRNA-reductase
MYAVVSFSYKHLEIALREQIALPQDKMQEFYASLKAEISEIEECIVLSTCNRFELIMALERWDEALLVRIVQWVAGYQGVSYESLKNGAMLFGGKEAIGHIFEVASSLDSLVVGETQITGQLKSAYKFSYENGFCHKELTRLIHFAFKCAAMIRTQTQISKNAISISSIAVSQLMLLCGDTPKKALVIGAGEMGRLCVRHLLAHQFEVKLIVRHLENAREFVESLDTPSISVASFGDLQSDLCDYPYVFTATGAQNAIITKAMIAPSALDRIWFDLALPRDIEGSREELQGKGISLYVIDDLQELMNANMQKRQGELLEAHKIIKHQIQEFEIWLKGLEVEPLIKSFREKARTCCVGEVDRAIQKGYLQEEERENVIRILHNAFNKFLHHPTIYIKSIQEKPEGDFILENVKKLFDLGEQNTTQMSYKCEKDQ
>NZ_CP016503.1|WP_083985957.1|214610_215537_+|polyprenyl-synthetase-family-protein
MCVKEQTDITALQAIQAQIQSMIEEYDNPYLMRLWGHITHGKMLRSRLILEIAGWNAQSVKLSAVVELIQLASLLHDDVIDNASLRRSKPSINELFGNQNAVMLGDALYSKAFYYLCDFATPIARSLSNAVCQLSSGEIWDVFLAQEVNGSLDVYFQMIEQKTASLIASSAECAAHLAGLDSKAYLHYGKCLGMAFQIVDDILDITQPQEVLGKPAMSDFKEGKMTLPYLLLQDKLEVWEQERLKAMCGVELDTEQREWVASQMQKHQCIKQSAAIAQKYANDAVELLPKPYNPKLDAIIASMVQRSF
>NZ_CP016503.1|WP_066338536.1|214243_214621_+|hypothetical-protein
MSRIIVLLLGVFSCVFGAWGYQQELTLKRNELYEVKLLVGRGDERPLSFFWTLIADGGIVVLAKYNGFNQQTILWQEHSLNALKIYLDSSVMYQPPYVCIFFKSYDEKSKQATFLLTTFGDVYVR
>NZ_CP016503.1|WP_066338534.1|214029_214251_+|DUF2018-family-protein
MEELLEGCPIEKWKEIVLHASPLPVERELERLLGELARYELERDGQEVSFEAIKKQKQSLAITSMANILSANE
>NZ_CP016503.1|WP_066338532.1|209655_214020_+|autotransporter-outer-membrane-beta-barrel-domain-containing-protein
MALSALLSVEGAESTEAPKEYPLTFDKTGTGTTQADLVYLQSFKKDPGVVQSAGASGDLSNGTDYSWTLSDPNDSGKNGLLILKTDPSAGGAVGANQADEFKTTANFVRSGTFATNGILALKRFQFVNGGKEIKEPTKDTEQPTKIASLKITSIPSTKTAGKADDTIFKTFMFGGDSVSLYSGTKVILDGFEKTILAGNVNLNSGAKSRSYNDGKLPTTLEVSNTKNPYSILDITGSLYLNTYNGSNFIAKNPSVFTAQIKGNIYINGYVSVSDKASAIFQSENLLKLNSSLVINTQLAKQIYQDQLGNQSFDPDYKKDKIQNLIIKAKSIEMGGRLDVGSGARGAEIKTDSSGMQIIDALPSDVGAKVEIVADMDTSIGATQSTSSTTERPKDWKDITQAQFLQTSGSSIRIGKNSEVMLKVINKDSSSFGEQNPYAIKLSGVTIESQEANNPINNLLVEAQINNGATSSSPKTSSNEKGAGKIELNGYFEFEANARAEIKAYDGISWANGFNLKLQEGARLGLYNGGYAQDSKNFAGQTQNTLDNTGRLVVDGGRLELWGSDTLNNKTATITLSAPFEQSDKDTSDKLVYRKDRGIFFLGNAGENRFHTINNSSEIVFDGYGYMGTMRNADDTATKRSLQIIAPTSERQGSIIAKGEGNTIETNGDLKISRQAIKLEKKELKGKDDKPLKDKDGKVITQEGHLYLTTHNIREAVNIIFGNKDDKVTQKDRVDISGGTLHLQSYYGGVESYNLRLADVHIDFSKLGFSETPTNQHTTPTGKNTESFMNKGLLSLRGNVEMYGPNKKASFYNGDEGSKDAHMDVYGTNKIGFFEQMEDGSASKFSLINNATLALRSSASLLIGGDLENSGQIVFDSDRFGIGFLGVNGKATFDMSKYQSGDFSGLEPLIKINNTNFYDLSLYTAYAVMHTGAGIQYRVGDKIYSNTQVRSINAQEGRAQKETSYQDQQQLLMKQMDDYLNGKGAYENNDGKLGVFLMGKSFVNDYSVLFMIGRSEAIGQIRIDGSDTGVIDQYLEILKKSEGNISDRLAGDMIQAIRSSNPKAMQVLNNALETQNALELGILKDMGTYQTSNLISVAREIDRSMRATANLIDPVVSDFEKMQVLREMSIQNRMVKASNPFVAEAQIALSVNSTKEKTQDKKEDLRADKGVAKIEQDEIGNVFALDNTDAKNSIWASLLTSTSRSDASTSAIYGFNLGYEMQPQESILVGFYLGYGYSNYKREILQNTAHNLALSAYVRFYYGNSEIDLGADYLQGFNHSDLVNTSITSLSNQFDFASSSFDVSARYGYVFDTPLRGLYVKPIASFHLFGALLPEVEGNGVASIVADAQGFGGLSSSLGAEVRQYVSPFSYIYLYSALGYYFYDESLGAKVSFKRAYNQVSYEALERPNYMFSIYAGGEGFVTKNFSLNANAGYRAGLDKGDHNISLGAGLKYKF
>NZ_CP016503.1|WP_066338530.1|208174_209614_+|replicative-DNA-helicase
MEQLGIHNIERAFLSTLLFDPSKFEEVEDLISKDDFSDHFYQAIFEVMQKRAQAQLPIHADIIASHIRSSRFFNEEEFLNILALAPLANLLEYAQEIKNASIKRSLHSLATFVAQQSLDGAMASEDILQEVERRIYSLVLEGGSTGEFRDSKQVVENTIAMILKNKKRGNSVLVGLNTGFHELNRITTGFNPGELIIIGARPSMGKTTFALNMVQKFLTSGCGVAFFSLEMSAEHLMLRMLSAMTSIHMQNLKTGELDDLQWENLNQSANVMQGYSFYVDDNSFLNVAQFRSKLRKLKAQDPRLGVVVVDYLQLMQGNKRGGGENKRHEEVSEISRSLKILARELQIPIIALSQLNRSVESRDDKRPQLSDLRESGSIEQDADMILFLYRDEVYAEREYNAKRARAQKENKEFKEEFQPSEIEKAEIIVAKNRNGEVKTVRVRFNKKYTRFEDHTEGNNENQASTRMMDFSGAIEVPFT
>NZ_CP016503.1|WP_066338527.1|207737_208010_+|hypothetical-protein
MHKGCFTQKKIQKKTQTKLEKLKNMLLPKQESKQRIQKILELHKGCFAQANFKTKSKPSLKYQKLCFYTDKIQNKHHIVSKLISHHLLAV
>NZ_CP016503.1|WP_066338548.1|221886_222105_+|hypothetical-protein
MINRDELEIPATTLENAFRIAYSNKKSSAIEVLSDLKRRNKLDELKSVFPNFDYIYDKGCRTLKFSGVLKHS
>NZ_CP016503.1|WP_066338550.1|222374_222773_-|hypothetical-protein
MQIHFKLISLFYLIFLPILCLYFYNLLHDTQKQTKNLAIRMMLIGFAPLAYSPFDTRLIHFLDFMSLMLFIPIVLVLCIGSCMMRFSILIHTKYLYHLSFICGYCFVMLCIYLFFDNTPYQQELLGYLTTLL
>NZ_CP016503.1|WP_066338557.1|222782_223322_-|hypothetical-protein
MKKTILCLLLMFFISRAENRPYLMMFTSNFLQLASFHIGTDTSLQTSDSKTSLVLGGSIGWNYILDWNRAPATSNIFGLRLKYLYSFDLLQTQSMGGIFYWHTPIFDENFFPFAFALGGGILFDTKDKFQTIGGYAETGITLWKIIPINVDILYRINIYRFRNTSNDISHHLNVVFTFF
>NZ_CP016503.1|WP_066338559.1|223340_223868_-|hypothetical-protein
MKKKLMLFVLLIVGIHSESRADPREDYVINYYLSYLQMFSLHVGSDSNFRSSDSSNSLILGGSIGDIYVTRHGPPIYGWRLKYLYTFDKPRTQSFGLVNYLHLSHGISAAALILGTGVLWETQEQARIGGYAETGITLWKIIPVNVDILYRINIYRFRNTSNDISHHLNVVFTFF
>NZ_CP016503.1|WP_066338565.1|223886_224411_-|hypothetical-protein
MKKKLILFVLLIVGIHSESRADSNDQFLIFSDNLQIYSFLVGSTTSFQDSNSNTSLVLGGSMGINYLIDFVNINEPLRRYGWRLKYLYTFDKPRTQSLGLVYYLHMSYGYLFPSALSLGVGVLWETQEKTRNGIYAETGIALWKTIPVNVDILYRMNMYGRDISHHLNVVFTFF
>NZ_CP016503.1|WP_066338568.1|224546_225062_-|DUF386-family-protein
MAIIGDIETLHHLFGKTIELESLHCAILNICNPNHPLNQKLLSLKKGEQFKEDLDHGIFVIGHCYQLKSEPFFESHQEYFDFQIVIKGYEHFLFGLPKNFQEKIPYDSSKDLIVWESQTAAYNQVKLCANDMIIFAPYDIHSAGFGTGEETQESVYKVIFKVPTKYIKHKL
>NZ_CP016503.1|WP_066338571.1|225142_225901_+|TatD-family-hydrolase
MIDTHCHLDNEVFLQDFSNVLQEAESEGVDTYIIPGADIFDLPRAIELAEKHSNLYFASGVHPYHAQDFDWERIAQVANHPKCVAIGECGLDFFRLPSEDVEEYKHRQKECFITQIKLAISLDKPLILHVREASAEVAKILREYPKAYGVFHCYNADEMLLEFCDRFYYGIGGVLTFSNAKRLVNVLPKIPRDRVIVETDAPYLTPHPFRGSRNEPKYIPLIVAKIAEVLDLPIESLKEMLEKNTKTLFKFP
>NZ_CP016503.1|WP_066341730.1|225989_227084_+|lytic-transglycosylase-domain-containing-protein
MSAFVYANTGKIEQSLVDFKMPQVKTSEGVLNSFDLDVSFLPMLNASNASYTKSVQARWDYFVQKFDQGYEVIPILRSMMNEQGIPQEFLFLAMAESEFSMRAYSPKKASGIWQLMPNTAKELGLTINDYIDERRDPFKSTRAAIKYLKFLKNITGEWYLAAMAYNCGIGRLQRAIKLAGTKDITVLLDPAKAYLPSETRQYIRMILGMSLAFNNADMLKKQDLEYFLNRGATMTITGVEVEAGTLLEDVAKATGLSLNELKKYNKQFKYYFLPPGKGKYTVYLPYDRLARFRQNFKGGKNPNSMFVLHYVQSGESLYSIAKKYKTSIKELKNINEVKSSHLSIKQKLIIPVLKNDYKRLAKKR
>NZ_CP016503.1|WP_066338574.1|227080_227971_+|septal-ring-lytic-transglycosylase-RlpA-family-protein
MKKYALACCAIYFLGCSSNSVYNGGIGAFGDYEDMSLYRSGSASGAVPSSIFNEKGVDTRGMRESQAIQRATMRPYKIDGKWYYPQKVTLGEKFDGIASWYGPNFHAKKTSNGEIYDMHAHTAASKILPMNTVVRVYNKENGKSTIVRINDRGPFVDGRIIDLSNAAAHDIAMVQKGTAKVQLEVIGFKGVIGVKMNRPQEMNAQLQKEFQIGQTDESVEGGRFAIQVGAFRRQEGAIELKERFAQLKEYKTIVQEQELDDGSIYRVLIDGFRSEEEAQDFLTRHSNIKAKVIIRQ
>NZ_CP016503.1|WP_066338577.1|227967_228465_+|HAD-IIIA-family-hydrolase
MKTQIEWLLLDVDGTLTDGLVSYGEDCEIKAFNIKDGLGLRIWKKRGKKIAIITGRESSAVARRAQELGVDALYMGVMDKAKVVLELQEKHQVSRVQMACVGDDLNDLPMFKLCGLSFAPKDCAKDVALRADVVLQNAGGRGAIREAIEMILEEEWEEIVEDFSN

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Crispr_ID: NZ_CP016503_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP016503_2

624594-624677

Orphan

Consensus_repeat	Method
CAAAAGTGTGCTTTGGCAAAAGCAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP016503_2

>merge|NZ_CP016503|2|624594-624677|CRISPRCasFinder
CAAAAGTGTGCTTTGGCAAAAGCAACTCCAAAAGAGAATCTAAGAGATTCCAAAAATACCAAAAGTGTGCTTTGGCAAAAGCAA

>NZ_CP016503|2|1|624594-624677|CRISPRCasFinder
CAAAAGTGTGCTTTGGCAAAAGCAA	CTCCAAAAGAGAATCTAAGAGATTCCAAAAATAC
CAAAAGTGTGCTTTGGCAAAAGCAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP016503.1\|WP_083986020.1\|625847_627734_-\|primosomal-protein-N'	unknown	unknown	gnl\|CDD\|235514
NZ_CP016503.1\|WP_066339475.1\|632318_633017_+\|pseudaminic-acid-cytidylyltransferase	unknown	unknown	gnl\|CDD\|274660
NZ_CP016503.1\|WP_066339460.1\|627995_628229_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP016503.1\|WP_066339438.1\|617909_618293_+\|TonB-system-transport-protein-ExbD	unknown	unknown	gnl\|CDD\|131851
NZ_CP016503.1\|WP_066339440.1\|618258_618963_+\|energy-transducer-TonB	unknown	unknown	gnl\|CDD\|223880
NZ_CP016503.1\|WP_083986018.1\|619029_621321_+\|TonB-dependent-receptor-plug-domain-containing-protein	unknown	unknown	gnl\|CDD\|238657
NZ_CP016503.1\|WP_066339424.1\|615711_616500_-\|flagellar-basal-body-rod-protein-FlgG	unknown	unknown	gnl\|CDD\|183687
NZ_CP016503.1\|WP_066339449.1\|622755_623115_-\|holo-ACP-synthase	unknown	unknown	gnl\|CDD\|234610
NZ_CP016503.1\|WP_066339465.1\|631045_631489_-\|GatB/YqeY-domain-containing-protein	unknown	unknown	gnl\|CDD\|370480
NZ_CP016503.1\|WP_066339448.1\|622171_622759_+\|DedA-family-protein	unknown	unknown	gnl\|CDD\|223659
NZ_CP016503.1\|WP_066339461.1\|628294_629665_-\|L-serine-ammonia-lyase	unknown	unknown	gnl\|CDD\|273233
NZ_CP016503.1\|WP_066339432.1\|617493_617913_+\|TonB-system-energizer-ExbB	unknown	unknown	gnl\|CDD\|131852
NZ_CP016503.1\|WP_066339458.1\|627703_628003_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|368052
NZ_CP016503.1\|WP_066339454.1\|625497_625818_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP016503.1\|WP_066339467.1\|631591_632338_+\|flagellar-basal-body-L-ring-protein-FlgH	unknown	unknown	gnl\|CDD\|234700
NZ_CP016503.1\|WP_083986176.1\|624907_625498_-\|16S-rRNA-(guanine(966)-N(2))-methyltransferase-RsmD	unknown	unknown	gnl\|CDD\|223813
NZ_CP016503.1\|WP_066339462.1\|629682_630924_-\|HAAAP-family-serine/threonine-permease	unknown	unknown	gnl\|CDD\|273283
NZ_CP016503.1\|WP_066339446.1\|621354_622155_+\|HugZ-family-heme-oxygenase	unknown	unknown	gnl\|CDD\|200360
NZ_CP016503.1\|WP_066339451.1\|623111_623633_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|181433
NZ_CP016503.1\|WP_066339429.1\|616510_617338_-\|flagellar-hook-basal-body-protein	unknown	unknown	gnl\|CDD\|227125

Protein	Function_ID	Function_description	E-value
NZ_CP016503.1\|WP_083986020.1\|625847_627734_-\|primosomal-protein-N'	gnl\|CDD\|235514	PRK05580, PRK05580, primosome assembly protein PriA; Validated.	0
NZ_CP016503.1\|WP_066339475.1\|632318_633017_+\|pseudaminic-acid-cytidylyltransferase	gnl\|CDD\|274660	TIGR03584, PseF, pseudaminic acid cytidylyltransferase. The sequences in this family include the pfam02348 (cytidyltransferase) domain and are homologous to the NeuA protein responsible for the transfer of CMP to neuraminic acid. According to, this gene is responsible for the transfer of CMP to the structurally related sugar, pseudaminic acid which is observed as a component of sugar modifications of flagellin in Campylobacter species. This gene is commonly observed in apparent operons with other genes responsible for the biosynthesis of pseudaminic acid and as a component of flagellar and exopolysaccharide biosynthesis loci.	6.2558e-103
NZ_CP016503.1\|WP_066339438.1\|617909_618293_+\|TonB-system-transport-protein-ExbD	gnl\|CDD\|131851	TIGR02804, Biopolymer_transport_protein_ExbD, TonB system transport protein ExbD, group 2. Members of this family are Gram-negative bacterial inner membrane proteins, generally designated ExbD, related to the TolR family modeled by TIGRFAMs TIGR02801. Members always are encoded next to a protein designated ExbB (TIGR02797), related to the TolQ family modeled by TIGRFAMs TIGR02796. ExbD and ExbB together form a proton channel through which they can harness the proton-motive force to energize TonB, which in turn energizes TonB-dependent receptors in the outer membrane. TonB-dependent receptors with known specificity tend to import siderophores or vitamin B12. A TonB system and Tol-Pal system often will co-exist in a single bacterial genome.	1.19302e-32
NZ_CP016503.1\|WP_066339440.1\|618258_618963_+\|energy-transducer-TonB	gnl\|CDD\|223880	COG0810, TonB, Periplasmic protein TonB, links inner and outer membranes [Cell envelope biogenesis, outer membrane].	6.96564e-18
NZ_CP016503.1\|WP_083986018.1\|619029_621321_+\|TonB-dependent-receptor-plug-domain-containing-protein	gnl\|CDD\|238657	cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel. Ligands apparently bind to the large extracellular loops. The N-terminal 150-200 residues form a plug from the periplasmic end of barrel. Energy (proton-motive force) and TonB-dependent conformational alteration of channel (parts of plug, and loops 7 and 8) allow passage of ligand. FepA residues 12-18 form the TonB box, which mediates the interaction with the TonB-containing inner membrane complex. TonB preferentially interacts with ligand-bound receptors. Transport thru the channel may resemble passage thru an air lock. In this model, ligand binding leads to closure of the extracellular end of pore, then a TonB-mediated signal facillitates opening of the interior side of pore, deforming the N-terminal plug and allowing passage of the ligand to the periplasm. Such a mechanism would prevent the free diffusion of small molecules thru the pore.	1.09708e-43
NZ_CP016503.1\|WP_066339424.1\|615711_616500_-\|flagellar-basal-body-rod-protein-FlgG	gnl\|CDD\|183687	PRK12693, flgG, flagellar basal body rod protein FlgG; Provisional.	1.91094e-156
NZ_CP016503.1\|WP_066339449.1\|622755_623115_-\|holo-ACP-synthase	gnl\|CDD\|234610	PRK00070, acpS, 4'-phosphopantetheinyl transferase; Provisional.	1.25861e-33
NZ_CP016503.1\|WP_066339465.1\|631045_631489_-\|GatB/YqeY-domain-containing-protein	gnl\|CDD\|370480	pfam09424, YqeY, Yqey-like protein. The function of this domain found in the YqeY protein is uncertain.	4.32304e-47
NZ_CP016503.1\|WP_066339448.1\|622171_622759_+\|DedA-family-protein	gnl\|CDD\|223659	COG0586, DedA, Uncharacterized membrane-associated protein [Function unknown].	5.53731e-27
NZ_CP016503.1\|WP_066339461.1\|628294_629665_-\|L-serine-ammonia-lyase	gnl\|CDD\|273233	TIGR00720, hypothetical_protein_NEICINOT_00681, L-serine dehydratase, iron-sulfur-dependent, single chain form. This enzyme is also called serine deaminase and L-serine dehydratase 1. L-serine ammonia-lyase converts serine into pyruvate in the gluconeogenesis pathway from serine. This enzyme is comprised of a single chain in Escherichia coli, Mycobacterium tuberculosis, and several other species, but has separate alpha and beta chains in Bacillus subtilis and related species. The beta and alpha chains are homologous to the N-terminal and C-terminal regions, respectively, but are rather deeply branched in a UPGMA tree. This enzyme requires iron and dithiothreitol for activation in vitro, and is a predicted 4Fe-4S protein. Escherichia coli Pseudomonas aeruginosa have two copies of this protein. [Energy metabolism, Amino acids and amines, Energy metabolism, Glycolysis/gluconeogenesis].	0
NZ_CP016503.1\|WP_066339432.1\|617493_617913_+\|TonB-system-energizer-ExbB	gnl\|CDD\|131852	TIGR02805, Biopolymer_transport_protein_ExbB, tonB-system energizer ExbB, group 2. Members of this protein family appear to be the ExbB protein of an ExbBD proton-transporting membrane complex that, by means of TonB, energizes transport by TonB-dependent receptors. Note that this family represents one of at least two distinct groups TolQ homologs designated ExbB - see also TIGR02797. Each group associates with a distinct group of ExbD proteins, and a single species may have two ExbB/ExbD/TonB systems. [Transport and binding proteins, Cations and iron carrying compounds].	4.07528e-47
NZ_CP016503.1\|WP_066339458.1\|627703_628003_-\|hypothetical-protein	gnl\|CDD\|368052	pfam04678, MCU, Mitochondrial calcium uniporter. MCU functions with MICU1, an essential gatekeeper component of calcium-channel transport, to facilitate Ca2+ uptake into the mitochondrion.	0.00223321
NZ_CP016503.1\|WP_066339467.1\|631591_632338_+\|flagellar-basal-body-L-ring-protein-FlgH	gnl\|CDD\|234700	PRK00249, flgH, flagellar basal body L-ring protein FlgH.	1.60443e-74
NZ_CP016503.1\|WP_083986176.1\|624907_625498_-\|16S-rRNA-(guanine(966)-N(2))-methyltransferase-RsmD	gnl\|CDD\|223813	COG0742, COG0742, N6-adenine-specific methylase [DNA replication, recombination, and repair].	1.73683e-49
NZ_CP016503.1\|WP_066339462.1\|629682_630924_-\|HAAAP-family-serine/threonine-permease	gnl\|CDD\|273283	TIGR00814, membrane_transport_protein_YhjV, serine transporter. The Hydroxy/Aromatic Amino Acid Permease (HAAAP) Family- serine/threonine subfamily (TC 2.A.42.2) The HAAAP family includes well characterized aromatic amino acid:H+ symport permeases and hydroxy amino acid permeases. This subfamily is specific for hydroxy amino acid transporters and includes the serine permease, SdaC, of E. coli, and the threonine permease, TdcC, of E. coli.//added GO terms, none avaialbelf or ser/thr specifically [SS 2/6/05] [Transport and binding proteins, Amino acids, peptides and amines].	1.72369e-154
NZ_CP016503.1\|WP_066339446.1\|621354_622155_+\|HugZ-family-heme-oxygenase	gnl\|CDD\|200360	TIGR04109, heme_ox_HugZ, heme oxygenase, HugZ family. Members of this protein family are HugZ, a class of heme oxygenase that belongs to the PPOX family (pfam01243) and lacks homology to the HmuO family (pfam01126). Characterized members of this family include HP0318 from Helicobacter pylori and CJ1613c from Campylobacter jejuni. This enzyme releases iron during the conversion of heme to biliverdin.	6.42377e-110
NZ_CP016503.1\|WP_066339451.1\|623111_623633_-\|hypothetical-protein	gnl\|CDD\|181433	PRK08455, fliL, flagellar basal body-associated protein FliL; Reviewed.	5.8917e-53
NZ_CP016503.1\|WP_066339429.1\|616510_617338_-\|flagellar-hook-basal-body-protein	gnl\|CDD\|227125	COG4786, FlgG, Flagellar basal body rod protein [Cell motility and secretion].	7.81017e-65

>NZ_CP016503.1|WP_066339451.1|623111_623633_-|hypothetical-protein
MAEEEEVKSNKGGKGLIIAIAGIVVLLVIVIAIVVVLLLGGGEEKSQEGVQEAPQEMQKSRKSQAMKSDLAKPGPIFAIPQPFIANLMGDNGRRYIKTSISLELSVPEMQKEITAKLPIIQDTINKILSSKTFLEISSPKGKLKLQEEIAQEINAYMSDGYIKSVFFTEFVIQ
>NZ_CP016503.1|WP_066339449.1|622755_623115_-|holo-ACP-synthase
MIGIDVVGIERIRKVCERFPQKFVPYFLSEAEQKLCQSGGVWNHQRIAGFWAIKEAVSKALGVGISQELGFLDICITKDARGRPIVCLTEEKCKAFAISRIDVSVTHDCGVSIAVAHIF
>NZ_CP016503.1|WP_066339448.1|622171_622759_+|DedA-family-protein
MQDTLSNLETYGYILLFFSTFGGGIIPLICASVLAGIGKLDLFLCIVVAICGNFVGSLLLVYLARFQKKEFGAYFHKHRRKIAIAHIWLKRYGIWLFFINKFIYGFKTILPLAVGLSKYPIKVFGFFNLLAAILWAVCIGMLGYFTSHFIINLFEEWQEYSYLFPVLFVVVVLAIYQILKIKTKKLHSKNQSRKN
>NZ_CP016503.1|WP_066339446.1|621354_622155_+|HugZ-family-heme-oxygenase
MDFSSIIKHMNDHHQAEMIGLCKKFGNAKEVQKVELESVDFGGLDLVYDGQKLRVEFPQKADAQTIKQAIIDLCTSVPQTLEFDKVKQEIAEFKQEFGSCILATLTKEGFPLSSYSPLIQMEGKNYIYISATAEHFDNIKTNPDKIEVMFLEDECKAKSIIVRKRLRYKAQARFVERGCEEFEKALDHLESSMGGSGGIKTIRNFSDFYLIELSFGSGRFVKGFGQAYILKENGEVEHIGITGNPHGNPHGNPNGNPHQPDLKPQQ
>NZ_CP016503.1|WP_083986018.1|619029_621321_+|TonB-dependent-receptor-plug-domain-containing-protein
MILYNNSIRHLSVFLLLSHFAVAQNTQSDEQELNKIITIGVKTGLDELNRNIYNVDQEMINSKGYTSLHQVFSYMPFISFSNVGTGSNIDIRGQGNSANVNTQIRLNGISLNLLDSSHGVTPLESIGLSEIENIEILPGGGAVMYGSGTRGGVVNIVTKKRYETLSGSVGGGYSYSNGSGADLNAKIGGKIGQGLYLSAGGNYTFTQGYRDGDIKNLGNVSGNLTWDINPSNSIGIDLDYFGSQENTTPLLHFADIANPTKKDRFKAGNGKIKTLQNRISVGANYDLSLSSSQKLNIKAFFQNYNLKYQDNLQIMDYHYASFNLPNTHINQDGSQFLDRKIGLEMQYNLKHENGNLIIGLDSIYNTGERNLNFDIDWKGDIKIPIPPKLIMQLSSYKHLIQTKVNANKWSNSLFLIEKYDFTQSFSLTAGGRYELAYYSGHRNLYNDMNIGMNIGMKPAAGSRGEQIEHPQTTRSHLSQRHLGTPSYGERASSPRTPYTLNKEFSQITHNYALELTPAFYFQAGNVYVKYEKGFRSPSPDNLTSRSGSGKSHPYLDTNVKSEDYHTFEVGSKLFAGDFAFFSLAGYYTLTQNEIYTIGSAHSGNGFKVGNYKLTQRAGAEIVGEQGFFDERLRLIESFSYVDARILDSGIASVQNNTLIPYVSNYKATLGLNYTFVPNWTFWINQSFVGSQKDTAQNTIPAYNLTDFGFNFNHQSFSLSFGIRNLFDSFYYDFYNKDKSDEIVGYAFLIAQGRSYFLEGHYKF
>NZ_CP016503.1|WP_066339440.1|618258_618963_+|energy-transducer-TonB
MKALIFRPKKINPTLFGFCCALALYALLFFALLSTQDHKISIQENGNQTFTLKLTKSSIKAQTKQEKSLANPPKPKQTPIPKNIRKAENKTIKQTQKITPQNALEQTKEVAQNTPPKDISSNTKADTQAEQEIEALAYNQGVTDDFLSKIHQAISNNNSYPRIAKIRGLEGDVIIGFCLNIDGSLEELQILQSTADTLLNTTALKAVSKASKSFPKPTRRVRIKVPISYHFAKK
>NZ_CP016503.1|WP_066339438.1|617909_618293_+|TonB-system-transport-protein-ExbD
MRIKRGDGLNIIPLIDVMLVLLAIVLSVSTFIAQGHIKIAVPQADSTTQSHQPKKQIVISVDSNNQIYLDNTPTTIAQLKQSFAHIDSNTSIKLQSDKESRFEIFVQILDILKDKQYESLDISTKKN
>NZ_CP016503.1|WP_066339432.1|617493_617913_+|TonB-system-energizer-ExbB
MEFLRTYLDYMIFSTLGLMGFVSIWLSIERIVYFKQIKLEDFKTLDSLEESLTKHITTLYIIYSNAPYVGLLGTIGGIIVTFYGMSLGTEIDAKKIMADLSLALEATGAGLLVAIPTLISYNALLRKIDLILNRYKAER
>NZ_CP016503.1|WP_066339429.1|616510_617338_-|flagellar-hook-basal-body-protein
MQSGYYSATGGMVTQFNRLDVIANNLANLNTNAYKRDDVAIGDFMRILKGERDELPIEDNTREAAQYWNRAMDKVPIVTEEFTDRALGAMSKTDNPLDFTLKKENAFFAVQTPDGVRYTRDGSFNLDENGNVVNKRGMKILSRNWIDSEGGIVLNASGDVAVTPSGNVFVRTPAGENVPAGALAIVSFADMRYLKKTADGLYEYVGDDLARDREMYENNVDVLTQGYLEKSNVNAVLEMTSLIETNRLVDMYQKVMKTHTDDLNTEAIQKLAVRA
>NZ_CP016503.1|WP_066339424.1|615711_616500_-|flagellar-basal-body-rod-protein-FlgG
MIRALHTATTGMLGQQMQIDTTSNNIANVNTIGYKKQRAEFSDLLYQTMQYAGTNTSDNTQSPTGIEVGLGVRPIAVAKMFSQGSLKETDNNLDVAITGNGFFQIQLPDGNIGYTRSGSFKIDANGAIVNSDGYPLVPEINIPEGTTQISIGTDGTVSALSGNQTDVAVLGQIEIVNFINPAGLHSLGDNLYINTNASGDPIAGVAGQNGMGQLRQGFIELSNVKLVEEMTDLITGQRAYEANSKSIQTADSMLQTVNQLKR
>NZ_CP016503.1|WP_083986176.1|624907_625498_-|16S-rRNA-(guanine(966)-N(2))-methyltransferase-RsmD
MKGQKTLKILAGRFKGLCLEMLDRATTRPSKSILKESLFNVLQTDIEGAVLIEGFGGSGSIGLEAMSRGAKEAIFVEKDPDAYKVLKHNLAKLHQKDESLQMRCILGDTFEVLPTLLETLNGASVLYLDPPFAIREGMEGIYDACFKLVEAIKNPLVFLIVFEHFATQEMPQRLGRFALHKQKRFGKSALSYYVVS
>NZ_CP016503.1|WP_066339454.1|625497_625818_-|hypothetical-protein
MKIALECQSLLLQDTLKYYLSSYLCDINDCDFVLSDYLTHSHKPLFDISLEKETLPFNPQALLVRLEEFAKSLHKEPSNRDDVKAEVQALLIEFTERFVQIIKKHK
>NZ_CP016503.1|WP_083986020.1|625847_627734_-|primosomal-protein-N'
MRKENTAFSVKYYLLAPIGLNTPSLTYSASAVVQEGRIVEIDIRNKSVMAVVLSEVQKPEFPCNEMNITEEFLLPHQIALAQFVTQYYCATLSQTYALFVPCQSQAPIQYPTTQPPTFQPILPLSQQQQGAFEFIQSRECALLFGATGSGKSEVYIHCLVDVLASGKTALLLIPEIGLTPQMHKRLEKVFGASMGVWHSKISKKHKQKLLNGIQDGTIRLVIGTRSALFLPLQSLGMIIVDEEHDDSYKSQQAPRYNARDLAIYLGNKIGAKVLLGSATPSLKTYYQMREKQGIYRLKKHFDTRVEILFLDEPTSLSARVCQSIEQEQREGRQIMIFTPTRANFKSLMCGDCGYSFACPFCSVSMSVHSRKNLLRCHYCHFTQALPISCPQCNGGHLHSHRIGTAQISQELQERFPSMQIGIFDRDHIKTQKKLEETLGQFERSEIDCLVGTQMLSKGHDYPNVGLVVIMGLDYVLHSADYKAKEKAMSLLFQIKGRCGRYKNGKVLIQTQNQGLFEQYLEDYEAFLQSELQYVRDLYPPFKKLATLTFVNANASKAQAQMHKVLEILKKLDDIEVVGGGRACIERIKGKYRFVILLRSDRSVALIRAISASLIYEKFEIDIDPLNIV
>NZ_CP016503.1|WP_066339458.1|627703_628003_-|hypothetical-protein
MTDQIQVAVKTKDGTRTFGFSIASCTTRTKEILYAKLKPKSGYVGIEDLLFLYVTQVEQESKLLEKNASLQSELRILREEHNGLEELDEQLEKKIQHLV
>NZ_CP016503.1|WP_066339460.1|627995_628229_-|hypothetical-protein
MSVLEKLVSKVEELCKKIETQKEELKNLKISNEELKHRLEQKEEELSRLLIAQSGEEQKLEAIFHRIDDALVDLHND
>NZ_CP016503.1|WP_066339461.1|628294_629665_-|L-serine-ammonia-lyase
MSDESNLSIFKIGVGPSSSHTVGPMLACNLFGEALEGEIDKVSRVLVDLYGSLSLTGKGHLSDLACIIGLNGVRAKSLTSQSKETILELALTKHTIKLAGRREIGFVYERDVLFHQEFLPLHENGMRLSAFDQNGTLIISQVYYSVGGGFVATEEELKNPVAKTSNPNLELRFSNAKELIALCEKYQKTIPEISMEYEKQFHSEEQIIAYCLEIWEAMQESYHNGCHPRNNLLPGSLKLKRRAPELLKLQGGKNDTFAFIDSLSLFAIAIAEENGAGGKVVTAPTNGACAVVPAVLLYLQEQMQEKFDEKMVVDFLLTAMVIGSLYRKNASISGAEAGCQAEIGSASSMAAGAMAWAMGGNTLQICSAAEIAMEHHLGLTCDPVAGLVQIPCIERNAFGAIKAVSSARMALSRQSDPVVGLDEVIETMYQTGRDMDLKYKETSLGGLARTIGKTYC
>NZ_CP016503.1|WP_066339462.1|629682_630924_-|HAAAP-family-serine/threonine-permease
MQKNLTWTKFDTRWMLSLFGTAVGAGILFLPIRAGTGGFWPIVIMALLVFPMTWLSHRGLSRFVCASTAAEKDITQAAEEHFGRGVSLLITILYFFAIYPICLAYGVGITNTMDSFLVNQMGFGHPNRIVLATIMVSAMMFVMTLSEERITKACEMLVYPLCLVLFAFSVYLIPEWKLGLLKEVPSFKNFAGVIWLTLPVLVFSFNHSPAISTFSVAMRREYGDLAPYKASQVLFRTSGMLLFFVMFFVVSCIMCLDAQDFQAAREANIPILSYFANKLNNPVISYGAPVVAFLAIVSSFFGHYFGAREGLNGILRKAIKMAGNENPNLKAISLFTSVFMYVTIIIVAYINPSILGFIEDLGGPVIAVILFLMPVYAVYRIKSMDKWKNPALDAFVVITGSLAISSIVAKFFL
>NZ_CP016503.1|WP_066339465.1|631045_631489_-|GatB/YqeY-domain-containing-protein
MSAIKEKMALDLKEAMKNGEHFKRDVLRLLNASLKQVEVDERIVLDDDRVIGILKSALKQREDSLEAYISAGREDLADHERGEIDVILSYLPRQLEDHELKQEVVSIIQEVGASGIKDLGKVMAAAKRLAQVADGKRISAFAKELLS
>NZ_CP016503.1|WP_066339467.1|631591_632338_+|flagellar-basal-body-L-ring-protein-FlgH
MQLALYPSNSILKGYILKKIFLTLIAFGSLWAVEPDIDFAPPEYVENMPEKEFIPEFNKAGSLFGQGDRPLFSDRRAMRPDDLITILINENSESSFSTNKTFNGASGGNVTPPILSYNGNDEAQKEAVEYLNNQSNFNLQKSNDTSNFQGGGKQNRSQSTKLTLTARVIKVLENGNYFIYGNKEILVDGEKQIMKVSGVIRPYDISRDNSIDSKYIADARIEFKSVGAISQTTTQKQATQAINDTYPF
>NZ_CP016503.1|WP_066339475.1|632318_633017_+|pseudaminic-acid-cytidylyltransferase
MIHTHSKKYAIIPARGGSKRIPQKNICDFLGKPLIAHSILKAIQSRLFDAVIVSTDCPQISQIAEQYGASVPFKREASLSDDHTPTLSVIIDAIRKCDIHPQSIICCIYPTAPLLQISTLQQAFKSIKHTKGYVFCATQYDFNPMRAFLLQDSQPTMLYPQHQHTRSQDLAPVFHDAGQFYLAKAQTFLDHTPIFSQDSYAIVLPSHQVQDIDTLEDLEIAKLKYKVLFGEN

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Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP016503_2	2.1\|624619\|34\|NZ_CP016503\|CRISPRCasFinder	624619-624652	34	NZ_CP018188	Streptococcus salivarius strain ICDC2 plasmid, complete sequence	32811-32844	11	0.676
NZ_CP016503_2	2.1\|624619\|34\|NZ_CP016503\|CRISPRCasFinder	624619-624652	34	NZ_CP020439	Streptococcus equinus strain FDAARGOS_251 plasmid unamed1 sequence	24773-24806	11	0.676
NZ_CP016503_2	2.1\|624619\|34\|NZ_CP016503\|CRISPRCasFinder	624619-624652	34	NZ_CP020439	Streptococcus equinus strain FDAARGOS_251 plasmid unamed1 sequence	210221-210254	11	0.676
NZ_CP016503_2	2.1\|624619\|34\|NZ_CP016503\|CRISPRCasFinder	624619-624652	34	MN480762	Streptococcus salivarius strain NU10 plasmid pSsal-NU10, complete sequence	93259-93292	11	0.676

1. spacer 2.1|624619|34|NZ_CP016503|CRISPRCasFinder matches to NZ_CP018188 (Streptococcus salivarius strain ICDC2 plasmid, complete sequence) position: , mismatch: 11, identity: 0.676

ctccaaaagagaatctaagagattccaaaaatac	CRISPR spacer
ccgcaaaagagaatctaagaaattgcagtccatt	Protospacer
*. *****************.*** **.     .

2. spacer 2.1|624619|34|NZ_CP016503|CRISPRCasFinder matches to NZ_CP020439 (Streptococcus equinus strain FDAARGOS_251 plasmid unamed1 sequence) position: , mismatch: 11, identity: 0.676

ctccaaaagagaatctaagagattccaaaaatac	CRISPR spacer
ccgcaaaagagaatctaagaaattgcagtccatt	Protospacer
*. *****************.*** **.     .

3. spacer 2.1|624619|34|NZ_CP016503|CRISPRCasFinder matches to NZ_CP020439 (Streptococcus equinus strain FDAARGOS_251 plasmid unamed1 sequence) position: , mismatch: 11, identity: 0.676

ctccaaaagagaatctaagagattccaaaaatac	CRISPR spacer
ccgcaaaagagaatctaagaaattgcagtccatt	Protospacer
*. *****************.*** **.     .

4. spacer 2.1|624619|34|NZ_CP016503|CRISPRCasFinder matches to MN480762 (Streptococcus salivarius strain NU10 plasmid pSsal-NU10, complete sequence) position: , mismatch: 11, identity: 0.676

ctccaaaagagaatctaagagattccaaaaatac	CRISPR spacer
ccgcaaaagagaatctaagaaattgcagtccatt	Protospacer
*. *****************.*** **.     .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

84597 : 92849

Paramecium_bursaria_Chlorella_virus(16.67%)

tRNA

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_066341707.1\|84597_85857_-	nucleotide sugar dehydrogenase	O41091	Paramecium_bursaria_Chlorella_virus	4.3e-06	20.4
WP_066341708.1\|86061_87438_+	sodium:proton antiporter	NA	NA	NA	NA
WP_066338286.1\|87430_87826_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_066338289.1\|87822_88713_-	carbon-nitrogen hydrolase	M1HCD5	Acanthocystis_turfacea_Chlorella_virus	1.1e-51	38.2
WP_083985932.1\|88856_89534_-\|tRNA	tRNA threonylcarbamoyladenosine dehydratase	S4VW33	Pandoravirus	1.0e-06	32.1
WP_066338294.1\|89518_90295_-	5'/3'-nucleotidase SurE	A0A1B1ITZ2	uncultured_Mediterranean_phage	8.4e-29	32.9
WP_066338296.1\|90291_91368_-	hypothetical protein	A0A1V0SAK9	Catovirus	9.9e-20	30.8
WP_066338297.1\|91811_92849_+	ribonucleotide-diphosphate reductase subunit beta	U5PWJ8	Bacillus_phage	5.9e-54	32.8

DBSCAN-SWA_2

582281 : 589256

uncultured_Mediterranean_phage(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_066339324.1\|582281_582557_-	preprotein translocase subunit YajC	A0A1B1IVR5	uncultured_Mediterranean_phage	1.3e-08	43.2
WP_066339327.1\|582584_583883_-	Na+/H+ antiporter NhaA	A0A2H4J5W3	uncultured_Caudovirales_phage	7.1e-73	44.3
WP_066339329.1\|583892_586712_-	RecB-like helicase	G3MA40	Bacillus_virus	8.6e-07	22.1
WP_066339331.1\|586871_587738_+	J domain-containing protein	A0A2P1ELC3	Moumouvirus	1.3e-14	62.3
WP_066339334.1\|587739_588084_+	helix-turn-helix transcriptional regulator	Q9EYF2	Enterobacteria_phage	8.3e-05	42.0
WP_066339336.1\|588080_589256_+	replication-associated recombination protein A	A0A127AWE7	Bacillus_phage	1.2e-55	34.5

DBSCAN-SWA_3

885805 : 893242

Synechococcus_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_066340119.1\|885805_886846_-	bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II	A0A2H4PQS2	Staphylococcus_phage	2.5e-52	51.5
WP_066340124.1\|887387_887690_-	hypothetical protein	NA	NA	NA	NA
WP_066340127.1\|888194_888380_+	hypothetical protein	NA	NA	NA	NA
WP_066340130.1\|888520_888793_-	30S ribosomal protein S15	NA	NA	NA	NA
WP_066340132.1\|889008_889512_+	5-(carboxyamino)imidazole ribonucleotide mutase	A0A2P0VNU7	Tetraselmis_virus	6.2e-25	40.9
WP_066340134.1\|889504_890218_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	A0A0E3FHU1	Synechococcus_phage	1.4e-38	38.8
WP_066340138.1\|890217_891642_+	amidophosphoribosyltransferase	A0A1B1ISH6	uncultured_Mediterranean_phage	4.3e-55	33.0
WP_066340141.1\|891638_892661_+	phosphoribosylformylglycinamidine cyclo-ligase	A0A0E3FGG1	Synechococcus_phage	3.0e-66	41.7
WP_066340143.1\|892654_893242_+	phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	1.1e-20	31.7

DBSCAN-SWA_4

1463577 : 1479763

Pseudomonas_phage(15.38%)

integrase,transposase

attL 1460553:1460570|attR 1484870:1484887

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1460553:1460570	attL	NA	NA	NA	NA
WP_066341453.1\|1463577_1464747_+	hypothetical protein	Q6QIB9	Burkholderia_phage	2.0e-18	28.8
WP_066340854.1\|1464813_1465602_+	phosphoadenosine phosphosulfate reductase family protein	A0A0F7L647	uncultured_marine_virus	4.7e-11	26.9
WP_066340855.1\|1465603_1466032_+	phage virion morphogenesis protein	H6V8N9	Pseudomonas_phage	3.1e-09	52.1
WP_066340856.1\|1466032_1466353_-	hypothetical protein	NA	NA	NA	NA
WP_066340857.1\|1466419_1466659_-	hypothetical protein	NA	NA	NA	NA
WP_066340858.1\|1466655_1467060_-	hypothetical protein	NA	NA	NA	NA
WP_066340861.1\|1467031_1467442_-	hypothetical protein	NA	NA	NA	NA
WP_066340862.1\|1467521_1468007_-	host-nuclease inhibitor protein Gam	A0A2K9VGT9	Faecalibacterium_phage	1.5e-15	31.0
WP_066340865.1\|1468017_1468353_-	hypothetical protein	NA	NA	NA	NA
WP_066340866.1\|1468773_1469640_-	AAA family ATPase	A0A2D1GNS0	Pseudomonas_phage	8.5e-30	31.6
WP_066341455.1\|1469811_1471935_-\|integrase,transposase	DDE-type integrase/transposase/recombinase	A0A219VHD4	Ochrobactrum_phage	9.4e-06	22.0
WP_066341456.1\|1471943_1472147_-	hypothetical protein	NA	NA	NA	NA
WP_066341462.1\|1472224_1472812_+	hypothetical protein	NA	NA	NA	NA
WP_083986139.1\|1472798_1473485_+	LexA family transcriptional regulator	M5A9D2	Nitratiruptor_phage	5.3e-27	35.2
WP_083986141.1\|1473777_1474329_+	restriction endonuclease	A0A2H4JAL2	uncultured_Caudovirales_phage	1.9e-22	33.3
WP_066341464.1\|1474325_1475150_+	site-specific DNA-methyltransferase	A0A1W6JJW1	Lactococcus_phage	1.1e-23	31.8
WP_066341465.1\|1475201_1476869_+	AIPR family protein	E5G6M2	Salmonella_phage	1.6e-56	31.7
WP_083986143.1\|1476904_1477672_-	TSUP family transporter	NA	NA	NA	NA
WP_083986204.1\|1477856_1478480_+	site-specific DNA-methyltransferase	A0A0U1ZWH4	Staphylococcus_phage	1.3e-11	27.1
WP_066341468.1\|1478713_1479457_+	3-oxoacyl-ACP reductase FabG	F2NZ40	Diadromus_pulchellus_ascovirus	5.8e-11	28.5
WP_066341470.1\|1479532_1479763_+	acyl carrier protein	E3SSM9	Prochlorococcus_phage	5.0e-06	51.5
1484870:1484887	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP016503

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection