CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP016638	Burkholderia pseudomallei strain M1 chromosome 1, complete sequence	0 crisprs	DinG,csa3,DEDDh,cas3,WYL	0	0	7	0
NZ_CP016639	Burkholderia pseudomallei strain M1 chromosome 2, complete sequence	3 crisprs	cas3,csa3,DinG	0	1	3	0

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

181726 : 221428

Ralstonia_phage(28.95%)

tail,integrase,head,plate,transposase

attL 206651:206667|attR 232258:232274

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_017880444.1\|181726_182512_+	glycosyltransferase family 25 protein	A0A1S5NQ44	Burkholderia_phage	1.6e-64	50.4
WP_017880445.1\|182615_183410_-	DNA adenine methylase	Q8W6S4	Burkholderia_virus	3.1e-103	67.2
WP_038719145.1\|183558_183951_-	hypothetical protein	A0A0U1ZGY3	Ralstonia_phage	9.8e-10	35.3
WP_080109818.1\|183960_185511_-	hypothetical protein	A0A1S5NTG6	Burkholderia_phage	4.7e-31	39.4
WP_017880447.1\|185513_186086_-	DUF2313 domain-containing protein	NA	NA	NA	NA
WP_017880448.1\|186082_187150_-\|plate	baseplate J/gp47 family protein	A0A0M3LQN4	Mannheimia_phage	4.3e-68	43.0
WP_017880449.1\|187149_187500_-	hypothetical protein	A0A2H4JDR8	uncultured_Caudovirales_phage	1.1e-25	55.7
WP_006025666.1\|187565_188168_-\|plate	phage baseplate assembly protein V	A0A0M3LPA3	Mannheimia_phage	1.3e-37	42.4
WP_065793459.1\|188164_189289_-\|tail	phage tail protein	A0A2H4J9E6	uncultured_Caudovirales_phage	2.4e-77	42.3
WP_017880451.1\|189272_190583_-	DMT family permease	A0A2H4JGT4	uncultured_Caudovirales_phage	9.5e-41	29.0
WP_038719147.1\|190584_192837_-\|tail	tail tape measure protein	A0A0M3LPB6	Mannheimia_phage	5.0e-58	30.7
WP_017880452.1\|192967_193366_-	hypothetical protein	NA	NA	NA	NA
WP_020381060.1\|193362_193740_-	hypothetical protein	A0A0M3LRV6	Mannheimia_phage	7.4e-23	42.5
WP_017880454.1\|193767_195189_-\|tail	tail sheath protein	A0A0M3LQC3	Mannheimia_phage	1.0e-93	46.2
WP_017880455.1\|195192_195420_-	DUF2635 domain-containing protein	NA	NA	NA	NA
WP_017880456.1\|195416_196085_-	DUF1834 family protein	B7SDP5	Haemophilus_phage	1.0e-30	42.2
WP_017880457.1\|196089_196503_-	DUF1320 domain-containing protein	C9DGP4	Escherichia_phage	3.9e-09	33.1
WP_017880458.1\|196509_197064_-	hypothetical protein	NA	NA	NA	NA
WP_065793460.1\|197181_198078_-	hypothetical protein	A0A0M4UKB9	Ralstonia_phage	1.7e-110	64.0
WP_038719148.1\|198122_198533_-	hypothetical protein	A0A0M4TU84	Ralstonia_phage	3.4e-29	52.2
WP_017880461.1\|198575_199685_-	hypothetical protein	A0A0M5N0Q6	Ralstonia_phage	1.3e-70	46.8
WP_017880462.1\|199886_200471_-	phage virion morphogenesis protein	B7SDZ4	Pseudomonas_virus	7.2e-09	39.3
WP_017880463.1\|200574_201888_-\|head	phage head morphogenesis protein	Q6QIB9	Burkholderia_phage	1.6e-59	46.1
WP_080109820.1\|201877_203449_-	DUF935 domain-containing protein	A0A0M5MS00	Ralstonia_phage	1.7e-145	52.3
WP_017880465.1\|203478_205266_-	hypothetical protein	A0A0M4U7A1	Ralstonia_phage	1.4e-249	72.6
WP_129111984.1\|205267_205465_-	hypothetical protein	NA	NA	NA	NA
WP_017880467.1\|205474_205972_-	DUF1804 family protein	A0A0M3VI86	Ralstonia_phage	2.8e-54	69.9
WP_017880468.1\|205977_206187_-	hypothetical protein	NA	NA	NA	NA
WP_017880469.1\|206183_206453_-	hypothetical protein	NA	NA	NA	NA
WP_017880470.1\|206476_206710_-	TraR/DksA family transcriptional regulator	A0A0M4UVB2	Ralstonia_phage	1.3e-06	46.9
206651:206667	attL	NA	NA	NA	NA
WP_017880471.1\|206710_207331_-	hypothetical protein	Q6QIC6	Burkholderia_phage	9.1e-10	36.0
WP_017880472.1\|207311_207557_-	hypothetical protein	A0A0M4UKB4	Ralstonia_phage	2.3e-09	43.5
WP_017880473.1\|207561_208050_-	lysozyme	A0A0M4R365	Salmonella_phage	8.7e-32	48.8
WP_017880474.1\|208177_208612_-\|transposase	transposase	A0A0A1IWZ1	Pseudomonas_phage	1.5e-19	40.7
WP_017880475.1\|208608_209019_-	regulatory protein GemA	A0A0M5MRZ7	Ralstonia_phage	1.9e-27	46.8
WP_103296805.1\|209085_209544_-	hypothetical protein	NA	NA	NA	NA
WP_059582598.1\|209553_210111_-	hypothetical protein	A0A1S5NV61	Burkholderia_phage	4.5e-08	80.0
WP_017880478.1\|210124_210742_-	DUF3164 family protein	Q5ZR10	Pseudomonas_phage	1.1e-60	53.5
WP_017880479.1\|210775_211081_-	hypothetical protein	NA	NA	NA	NA
WP_038719153.1\|211077_211515_-	hypothetical protein	NA	NA	NA	NA
WP_080109822.1\|211526_211844_-	hypothetical protein	NA	NA	NA	NA
WP_017880481.1\|211898_212153_-	hypothetical protein	NA	NA	NA	NA
WP_017880482.1\|212203_212536_-	hypothetical protein	NA	NA	NA	NA
WP_038719151.1\|212522_213149_-	hypothetical protein	A0A0M3VI82	Ralstonia_phage	3.7e-19	51.9
WP_017880484.1\|213141_213372_-	hypothetical protein	NA	NA	NA	NA
WP_017880485.1\|213379_214126_-	ATP-binding protein	A0A0U5DWK7	unidentified_phage	1.4e-84	65.9
WP_017880486.1\|214143_216324_-\|integrase,transposase	DDE-type integrase/transposase/recombinase	A0A125RNE9	Pseudomonas_phage	4.9e-183	48.6
WP_038719155.1\|216323_216806_-	hypothetical protein	NA	NA	NA	NA
WP_080109826.1\|216867_217185_-	transcriptional regulator	A0A2P9JZG5	Alteromonadaceae_phage	1.2e-13	43.3
WP_051078833.1\|217346_218111_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_128972282.1\|218606_218813_+	hypothetical protein	Q8W6S4	Burkholderia_virus	4.0e-15	84.4
WP_004521809.1\|218833_219547_-	hypothetical protein	A4PE26	Ralstonia_virus	1.5e-32	43.3
WP_011204999.1\|219555_220062_-	hypothetical protein	NA	NA	NA	NA
WP_004531127.1\|220033_220507_-	hypothetical protein	NA	NA	NA	NA
WP_004552921.1\|220499_221009_-	DUF4123 domain-containing protein	A4PE24	Ralstonia_virus	3.0e-19	40.1
WP_004546975.1\|221005_221428_-	PAAR domain-containing protein	A4JWV5	Burkholderia_virus	4.9e-15	48.3
232258:232274	attR	NA	NA	NA	NA

DBSCAN-SWA_2

1106750 : 1111234

Burkholderia_virus(57.14%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011851785.1\|1106750_1106984_+	hypothetical protein	A4PE26	Ralstonia_virus	2.1e-12	59.1
WP_004531416.1\|1107019_1107247_-	hypothetical protein	Q8W6S4	Burkholderia_virus	3.8e-22	75.8
WP_004557051.1\|1107500_1107896_+	hypothetical protein	NA	NA	NA	NA
WP_004521249.1\|1108176_1108602_+	PAAR domain-containing protein	A4JWV5	Burkholderia_virus	1.1e-14	47.0
WP_004521248.1\|1108598_1109105_+	DUF4123 domain-containing protein	A4PE24	Ralstonia_virus	6.7e-19	39.4
WP_038763587.1\|1109446_1110049_+	hypothetical protein	NA	NA	NA	NA
WP_076804729.1\|1110469_1110781_+	hypothetical protein	A4PE26	Ralstonia_virus	4.5e-26	60.2
WP_071897863.1\|1110801_1110987_-	hypothetical protein	Q8W6S4	Burkholderia_virus	4.4e-21	85.2
WP_004196630.1\|1110970_1111234_-	hypothetical protein	Q8W6S4	Burkholderia_virus	2.2e-26	85.5

DBSCAN-SWA_3

1624716 : 1633512

Tanapox_virus(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004547474.1\|1624716_1625559_+	alpha/beta hydrolase	A7XCB7	Tanapox_virus	5.5e-18	27.0
WP_004522362.1\|1625901_1626825_-	histone deacetylase family protein	A0A2K9KZC4	Tupanvirus	2.4e-43	36.2
WP_085955807.1\|1626952_1628263_+	lytic murein transglycosylase B	NA	NA	NA	NA
WP_004532363.1\|1628489_1629392_-	cysteine synthase CysM	A0A1X9I5F1	Streptococcus_phage	1.9e-53	39.9
WP_004189725.1\|1629716_1630034_-	competence protein ComE	NA	NA	NA	NA
WP_004190173.1\|1630105_1631098_-	ADP-glyceromanno-heptose 6-epimerase	R9S880	Prochlorococcus_phage	9.1e-28	30.9
WP_009921652.1\|1631156_1632080_-	D-glycero-beta-D-manno-heptose-7-phosphate kinase	A0A2H4N7X4	Lake_Baikal_phage	1.3e-15	27.1
WP_004527508.1\|1632111_1633512_-	UDP-glucose/GDP-mannose dehydrogenase family protein	A0A127AXI2	Bacillus_phage	1.1e-79	38.5

DBSCAN-SWA_4

2021377 : 2030621

unidentified_phage(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004522151.1\|2021377_2022925_+	polynucleotide adenylyltransferase PcnB	H7BUW3	unidentified_phage	4.3e-24	31.2
WP_004194373.1\|2022961_2023489_+	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA
WP_065796131.1\|2023485_2024169_+	deoxynucleoside kinase	A0A249XZR7	Enterococcus_phage	1.5e-05	26.0
WP_004194137.1\|2024233_2025049_+	3-methyl-2-oxobutanoate hydroxymethyltransferase	A0A0N7HVJ8	Ostreococcus_lucimarinus_virus	8.8e-37	33.3
WP_017881073.1\|2025232_2027239_-	bifunctional anthranilate synthase component I family protein/class IV aminotransferase	S4VT78	Pandoravirus	5.3e-51	34.3
WP_004533593.1\|2027272_2028403_-	molecular chaperone DnaJ	A0A1V0SBY2	Catovirus	3.8e-22	27.6
WP_004194034.1\|2028668_2030621_-	molecular chaperone DnaK	A0A1V0SH73	Hokovirus	2.7e-148	49.2

DBSCAN-SWA_5

2643500 : 2654470

Agrobacterium_phage(16.67%)

protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004196461.1\|2643500_2645801_-\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	5.1e-167	42.1
WP_004194131.1\|2645797_2646112_-\|protease	ATP-dependent Clp protease adapter ClpS	A0A218MMY6	uncultured_virus	4.4e-13	44.6
WP_004196460.1\|2646644_2646848_+	cold-shock protein	A0A2H4N7Y6	Lake_Baikal_phage	6.8e-23	81.8
WP_038723578.1\|2646977_2648594_-	multicopper oxidase family protein	NA	NA	NA	NA
WP_004189626.1\|2648606_2648789_+	hypothetical protein	NA	NA	NA	NA
WP_004189552.1\|2648761_2650021_-	NADP-dependent isocitrate dehydrogenase	Q77Z09	Phage_21	5.2e-12	63.0
WP_004189780.1\|2650288_2650867_+	pseudouridine synthase	NA	NA	NA	NA
WP_071810810.1\|2651129_2651348_+	hypothetical protein	NA	NA	NA	NA
WP_004185496.1\|2651545_2652055_+	DUF192 domain-containing protein	A0A1B1IUW8	uncultured_Mediterranean_phage	5.5e-13	41.2
WP_004197486.1\|2652355_2654470_+	elongation factor G	E4ZFJ7	Streptococcus_phage	5.8e-56	26.7

DBSCAN-SWA_6

3706962 : 3718186

Burkholderia_virus(22.22%)

integrase

attL 3703756:3703770|attR 3717732:3717746

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
3703756:3703770	attL	NA	NA	NA	NA
WP_004524472.1\|3706962_3709050_+	AAA family ATPase	A7KV33	Bacillus_phage	1.9e-99	35.8
WP_004202928.1\|3709370_3710270_-	cytochrome c	NA	NA	NA	NA
WP_004525725.1\|3711294_3712038_+\|integrase	site-specific integrase	A0A0S2SYQ7	Pseudomonas_phage	9.4e-54	47.3
WP_009922658.1\|3712417_3712735_+	helix-turn-helix transcriptional regulator	A0A088CD40	Shigella_phage	6.2e-15	57.0
WP_004530410.1\|3712734_3713652_+	hypothetical protein	A4PE40	Ralstonia_virus	4.0e-46	40.6
WP_009932250.1\|3713905_3714448_+	PAAR domain-containing protein	A4JWV5	Burkholderia_virus	8.1e-47	55.8
WP_009932249.1\|3714705_3715158_+	VRR-NUC domain-containing protein	Q8W6S1	Burkholderia_virus	2.3e-31	58.8
WP_004525722.1\|3715157_3716237_+	DUF3396 domain-containing protein	A9YX32	Burkholderia_phage	2.2e-160	99.0
WP_004525721.1\|3716393_3716642_+	BrnA antitoxin family protein	K4NZP3	Burkholderia_phage	4.0e-41	97.6
WP_011857935.1\|3717484_3718186_+	chitin-binding protein	A0A0K1Y848	Apis_mellifera_filamentous_virus	4.8e-07	30.4
3717732:3717746	attR	NA	NA	NA	NA

DBSCAN-SWA_7

3942232 : 3968466

Burkholderia_phage(28.57%)

tail,portal,integrase,protease,terminase,transposase

attL 3942812:3942850|attR 3963845:3963883

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004539219.1\|3942232_3942760_+\|protease	ClpXP protease specificity-enhancing factor	A0A1S5R3H3	Pseudomonas_phage	2.0e-21	51.0
3942812:3942850	attL	NA	NA	NA	NA
WP_043277140.1\|3942953_3943994_+\|integrase	site-specific integrase	W6MYA3	Pseudomonas_phage	2.3e-50	38.2
WP_082250075.1\|3944039_3945287_+	abortive infection family protein	NA	NA	NA	NA
WP_038772165.1\|3945641_3945860_+	hypothetical protein	NA	NA	NA	NA
WP_129111999.1\|3945940_3946909_+	hypothetical protein	NA	NA	NA	NA
WP_129112000.1\|3946880_3947195_-	hypothetical protein	NA	NA	NA	NA
WP_065793615.1\|3947242_3947629_+	conjugal transfer transcriptional regulator TraJ	NA	NA	NA	NA
WP_065793616.1\|3947625_3949611_+	relaxase/mobilization nuclease domain-containing protein	NA	NA	NA	NA
WP_065793617.1\|3949785_3950565_+	P-type conjugative transfer protein TrbJ	NA	NA	NA	NA
WP_082250076.1\|3950576_3950768_+	hypothetical protein	NA	NA	NA	NA
WP_082250101.1\|3950787_3952200_+	P-type conjugative transfer protein TrbL	NA	NA	NA	NA
WP_065793619.1\|3952266_3952497_+	toxin of toxin-antitoxin type 1 system	NA	NA	NA	NA
WP_155122752.1\|3952527_3952683_-	hypothetical protein	NA	NA	NA	NA
WP_129112001.1\|3953238_3953853_+	hypothetical protein	NA	NA	NA	NA
WP_082250077.1\|3953852_3954977_+	ImmA/IrrE family metallo-endopeptidase	B6SBZ6	Clostridium_virus	1.9e-29	32.7
WP_080306021.1\|3955006_3955477_+	hypothetical protein	NA	NA	NA	NA
WP_094188790.1\|3955862_3956186_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_082250078.1\|3956272_3956842_+	DUF4433 domain-containing protein	NA	NA	NA	NA
WP_059642481.1\|3956841_3957486_+	DUF4433 domain-containing protein	NA	NA	NA	NA
WP_065793620.1\|3957485_3958562_+	macro domain-containing protein	B0FIJ9	Escherichia_phage	4.9e-19	37.6
WP_004199888.1\|3958928_3959426_+\|terminase	terminase	K4NXI4	Burkholderia_phage	2.6e-55	100.0
WP_041192239.1\|3959422_3960478_+\|portal	phage portal protein	A4JWQ2	Burkholderia_virus	7.5e-206	99.4
WP_004202809.1\|3960521_3960878_-	putative addiction module antidote protein	A4JWV1	Burkholderia_virus	3.9e-42	100.0
WP_011204767.1\|3960880_3961204_-	type II toxin-antitoxin system RelE/ParE family toxin	A4JWV2	Burkholderia_virus	1.1e-54	98.1
WP_004552667.1\|3961844_3963101_+	AAA family ATPase	A0A077SLJ9	Escherichia_phage	3.6e-21	26.2
WP_031313497.1\|3963103_3963721_+	DUF4276 family protein	NA	NA	NA	NA
WP_004552669.1\|3964492_3964819_+	hypothetical protein	A4JWY2	Burkholderia_virus	2.3e-52	99.1
3963845:3963883	attR	NA	NA	NA	NA
WP_065793621.1\|3964811_3965225_+\|tail	phage tail protein I	K4NXA0	Burkholderia_phage	5.2e-70	99.2
WP_065793622.1\|3965122_3965725_+	site-specific DNA-methyltransferase	K4NZW3	Burkholderia_phage	1.5e-86	91.5
WP_085955809.1\|3966054_3967190_-\|transposase	IS3 family transposase	Q716C2	Shigella_phage	6.5e-22	31.4
WP_111963042.1\|3967406_3967997_+	hypothetical protein	NA	NA	NA	NA
WP_004547581.1\|3968100_3968466_-	phage virion morphogenesis protein	K4NZQ8	Burkholderia_phage	1.5e-52	88.4

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP016639

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP016639_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP016639_1

876396-876529

Orphan

Consensus_repeat	Method
GCATCCCGATGATCGGGTATTCCG	CRISPRCasFinder

2 spacers

The CRISPR arrays of NZ_CP016639_1

>merge|NZ_CP016639|1|876396-876529|CRISPRCasFinder
GTCACTCGACGACCGAGTATTCCGGACAGGGCGCACCCCGGCGATCGAGCATCCCGATGATCGGGTATTCCGGCGGCGGCGCCTCTGCGGTGGAGTGCTTCGGCGAGCAGGCATCCCGATGATCGGGCATTCCG

>NZ_CP016639|1|1|876396-876529|CRISPRCasFinder
GTCACTCGACGACCGAGTATTCCG	GACAGGGCGCACCCCGGCGATCGA
GCATCCCGATGATCGGGTATTCCG	GCGGCGGCGCCTCTGCGGTGGAGTGCTTCGGCGAGCAG
GCATCCCGATGATCGGGCATTCCG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP016639.1\|WP_004523287.1\|880338_881997_-\|GMC-family-oxidoreductase	unknown	unknown	gnl\|CDD\|225186
NZ_CP016639.1\|WP_060547568.1\|874594_875866_-\|polyhydroxyalkanoate-depolymerase	unknown	unknown	gnl\|CDD\|130908
NZ_CP016639.1\|WP_082250117.1\|870232_870637_-\|quinone-oxidoreductase	unknown	unknown	gnl\|CDD\|367272
NZ_CP016639.1\|WP_009941251.1\|886715_887042_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP016639.1\|WP_004523291.1\|882902_883838_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176109
NZ_CP016639.1\|WP_082250118.1\|872539_874324_-\|ribonucleotide-reductase-like-protein	unknown	unknown	gnl\|CDD\|180772
NZ_CP016639.1\|WP_004187137.1\|866378_866828_+\|CBS-domain-containing-protein	unknown	unknown	gnl\|CDD\|341411
NZ_CP016639.1\|WP_004552281.1\|865282_865936_-\|SagB/ThcOx-family-dehydrogenase	unknown	unknown	gnl\|CDD\|380318
NZ_CP016639.1\|WP_004187469.1\|877253_877649_+\|conjugal-transfer-protein-TraR	unknown	unknown	gnl\|CDD\|224648
NZ_CP016639.1\|WP_009982175.1\|869103_870135_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|236122
NZ_CP016639.1\|WP_044368691.1\|870653_872465_-\|bifunctional-aminoglycoside-phosphotransferase/ATP-binding-protein	unknown	unknown	gnl\|CDD\|225098
NZ_CP016639.1\|WP_082250161.1\|882296_882728_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP016639.1\|WP_004529498.1\|864780_865215_+\|Hsp20/alpha-crystallin-family-protein	unknown	unknown	gnl\|CDD\|223149
NZ_CP016639.1\|WP_009941253.1\|886078_886384_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|240624
NZ_CP016639.1\|WP_017881570.1\|867292_869107_-\|SulP-family-inorganic-anion-transporter	unknown	unknown	gnl\|CDD\|223732
NZ_CP016639.1\|WP_009927403.1\|883964_884075_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP016639.1\|WP_004200700.1\|884135_885251_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|378454
NZ_CP016639.1\|WP_011204702.1\|863246_864374_+\|porin	unknown	unknown	gnl\|CDD\|238208
NZ_CP016639.1\|WP_004196898.1\|885552_885993_-\|SRPBCC-family-protein	unknown	unknown	gnl\|CDD\|176863
NZ_CP016639.1\|WP_004532550.1\|877781_880055_+\|pyridine-nucleotide-disulfide-oxidoreductase	unknown	unknown	gnl\|CDD\|369639

Protein	Function_ID	Function_description	E-value
NZ_CP016639.1\|WP_004523287.1\|880338_881997_-\|GMC-family-oxidoreductase	gnl\|CDD\|225186	COG2303, BetA, Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism].	2.19137e-37
NZ_CP016639.1\|WP_060547568.1\|874594_875866_-\|polyhydroxyalkanoate-depolymerase	gnl\|CDD\|130908	TIGR01849, unnamed_protein_product, polyhydroxyalkanoate depolymerase, intracellular. This model represents an intracellular depolymerase for polyhydroxyalkanoate (PHA), a carbon and energy storing polyester that accumulates in granules in many bacterial species when carbon sources are abundant but other nutrients are limiting. This family is named for PHAs generally, rather than polyhydroxybutyrate (PHB) specificially as in Ralstonia eutropha H16, to avoid overcalling chemical specificity in other species. Note that this family lacks the classic GXSXG lipase motif and instead shows weak similarity to some [Fatty acid and phospholipid metabolism, Degradation].	1.17003e-114
NZ_CP016639.1\|WP_082250117.1\|870232_870637_-\|quinone-oxidoreductase	gnl\|CDD\|367272	pfam02956, TT_ORF1, TT viral orf 1. TT virus (TTV), isolated initially from a Japanese patient with hepatitis of unknown aetiology, has since been found to infect both healthy and diseased individuals and numerous prevalence studies have raised questions about its role in unexplained hepatitis. ORF1 is a large 750 residue protein. The N-terminal half of this protein corresponds to the capsid protein.	0.00785156
NZ_CP016639.1\|WP_004523291.1\|882902_883838_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|176109	cd08417, PBP2_Nitroaromatics_like, The C-terminal substrate binding domain of LysR-type transcriptional regulators that involved in the catabolism of nitroaromatic/naphthalene compounds and that of related regulators; contains the type 2 periplasmic binding fold. This CD includes the C-terminal substrate binding domain of LysR-type transcriptional regulators involved in the catabolism of dinitrotoluene and similar compounds, such as DntR, NahR, and LinR. The transcription of the genes encoding enzymes involved in such degradation is regulated and expression of these enzymes is enhanced by inducers, which are either an intermediate in the metabolic pathway or compounds to be degraded. Also included are related LysR-type regulators clustered together in phylogenetic trees, including NodD, ToxR, LeuO, SyrM, TdcA, and PnbR. This substrate-binding domain shows significant homology to the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	1.07132e-61
NZ_CP016639.1\|WP_082250118.1\|872539_874324_-\|ribonucleotide-reductase-like-protein	gnl\|CDD\|180772	PRK06948, PRK06948, ribonucleotide reductase-like protein; Provisional.	0
NZ_CP016639.1\|WP_004187137.1\|866378_866828_+\|CBS-domain-containing-protein	gnl\|CDD\|341411	cd17775, CBS_pair_bact_arch, Two tandem repeats of the cystathionine beta-synthase (CBS pair) domains present in bacteria and archaea. The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase).	1.39507e-50
NZ_CP016639.1\|WP_004552281.1\|865282_865936_-\|SagB/ThcOx-family-dehydrogenase	gnl\|CDD\|380318	cd02142, McbC_SagB-like_oxidoreductase, oxidase similar to the microcin B17 processing protein McbC. This family is the oxidase domain of NRPS (non-ribosomal peptide synthetase) and other systems that modify polypeptides by cyclizing a thioester to form a ring. These include EpoB, part of the epothilone biosynthesis pathway; TubD, part of the tubulysin biosynthesis pathway, MtsD, part of the myxothiozol biosynthesis pathway; IndC, part of the indigoidine biosynthesis pathway and TfxB, part of the trifitoxin processing pathway. All are FMN-dependent and oxidize the product of the cyclization of thioesters in short polypeptides.	4.23582e-20
NZ_CP016639.1\|WP_004187469.1\|877253_877649_+\|conjugal-transfer-protein-TraR	gnl\|CDD\|224648	COG1734, DksA, DnaK suppressor protein [Signal transduction mechanisms].	1.7869e-14
NZ_CP016639.1\|WP_009982175.1\|869103_870135_-\|hypothetical-protein	gnl\|CDD\|236122	PRK07877, PRK07877, Rv1355c family protein.	2.5119e-30
NZ_CP016639.1\|WP_044368691.1\|870653_872465_-\|bifunctional-aminoglycoside-phosphotransferase/ATP-binding-protein	gnl\|CDD\|225098	COG2187, COG2187, Uncharacterized protein conserved in bacteria [Function unknown].	9.81241e-75
NZ_CP016639.1\|WP_004529498.1\|864780_865215_+\|Hsp20/alpha-crystallin-family-protein	gnl\|CDD\|223149	COG0071, IbpA, Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones].	9.00264e-33
NZ_CP016639.1\|WP_009941253.1\|886078_886384_+\|hypothetical-protein	gnl\|CDD\|240624	cd05299, CtBP_dh, C-terminal binding protein (CtBP), D-isomer-specific 2-hydroxyacid dehydrogenases related repressor. The transcriptional corepressor CtBP is a dehydrogenase with sequence and structural similarity to the d2-hydroxyacid dehydrogenase family. CtBP was initially identified as a protein that bound the PXDLS sequence at the adenovirus E1A C terminus, causing the loss of CR-1-mediated transactivation. CtBP binds NAD(H) within a deep cleft, undergoes a conformational change upon NAD binding, and has NAD-dependent dehydrogenase activity.	0.00589701
NZ_CP016639.1\|WP_017881570.1\|867292_869107_-\|SulP-family-inorganic-anion-transporter	gnl\|CDD\|223732	COG0659, SUL1, Sulfate permease and related transporters (MFS superfamily) [Inorganic ion transport and metabolism].	2.32192e-108
NZ_CP016639.1\|WP_004200700.1\|884135_885251_+\|hypothetical-protein	gnl\|CDD\|378454	pfam10604, Polyketide_cyc2, Polyketide cyclase / dehydrase and lipid transport. This family contains polyketide cylcases/dehydrases which are enzymes involved in polyketide synthesis. It also includes other proteins of the START superfamily.	2.16274e-11
NZ_CP016639.1\|WP_011204702.1\|863246_864374_+\|porin	gnl\|CDD\|238208	cd00342, gram_neg_porins, Porins form aqueous channels for the diffusion of small hydrophillic molecules across the outer membrane. Individual 16-strand anti-parallel beta-barrels form a central pore, and trimerizes thru mainly hydrophobic interactions at the interface. Trimers are stabilized by hytrophillic clamping of Loop L2. Loop 3 bends into the pore, creating an elliptical constriction of about 7 x 11A, large enough to allow passage of a glucose molecule without steric hindrance. Removal of the C-terminal residue (usuallly F) destabilizes the trimer and removal of the 16th beta-sheet abolishes trimerization. Unlike typical membrane proteins, porins lack long hydrophobic stretches. Short turns are found at the smooth, periplasmic end, longer irregular loops are found at the rough, extracellular end. C-terminal residue forms salt bridge with N-terminus.	3.6975e-55
NZ_CP016639.1\|WP_004196898.1\|885552_885993_-\|SRPBCC-family-protein	gnl\|CDD\|176863	cd07821, PYR_PYL_RCAR_like, Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins. The PYR/PYL/RCAR-like family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. PYR/PYL/RCAR plant proteins are receptors involved in signal transduction. They bind abscisic acid (ABA) and mediate its signaling. ABA is a vital plant hormone, which regulates plant growth, development, and response to environmental stresses. Upon binding ABA, these plant proteins interact with a type 2C protein phosphatase (PP2C), such as ABI1 and ABI2, and inhibit their activity. When ABA is bound, a loop (designated the gate/CL2 loop) closes over the ligand binding pocket, resulting in the weakening of the inactive PYL dimer and facilitating type 2C protein phosphatase binding. In the ABA:PYL1:ABI1 complex, the gate blocks substrate access to the phosphatase active site. A conserved Trp from PP2C inserts into PYL to lock the receptor in a closed formation. This group also contains Methylobacterium extorquens AM1 MxaD. The mxaD gene is located within the mxaFJGIR(S)ACKLDEHB cluster which encodes proteins involved in methanol oxidation. MxaD may participate in the periplasmic electron transport chain for oxidation of methanol. Mutants lacking MxaD exhibit a reduced growth on methanol, and a lower rate of respiration with methanol.	3.1145e-25
NZ_CP016639.1\|WP_004532550.1\|877781_880055_+\|pyridine-nucleotide-disulfide-oxidoreductase	gnl\|CDD\|369639	pfam07992, Pyr_redox_2, Pyridine nucleotide-disulphide oxidoreductase. This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain.	7.68683e-57

>NZ_CP016639.1|WP_060547568.1|874594_875866_-|polyhydroxyalkanoate-depolymerase
MLYAWLEAQREFFRACQPWAGAAQRAGAGAGARPAGWPTWGPMARAADAVPAPPPFAIASIEIDGAAVPVDECVVDDTPFCALRKFSRRLRGDAAARPAVFLCTPLAGHHAVMLRETVETILATRDVYVTDWRNARDVPLEAGAFGLDDYVCTLERFVAGAAGDGLHMMAVCQATVPALAAVALLAARDVHVTSVALLGGPVDTRSHPTLIDRFALEHDLDWFRRTAIDIVPPPYAGAGRRVYPGFIQHAAIIVAHPQRRASLESRYWAAWMTGDFAAAARCLREMNEYGAVLDMTERYFLDTIRVIFHERLLAQGRWSIGRRLVAPRRLTRTALCTIEGGRDDIAGAGQTHAAHALCDAVPDAVRERITEPDCDHYDLFLGARWRRTIHPALDAFWTRAEAARAAAGEPRPTAERAERRIAH
>NZ_CP016639.1|WP_082250118.1|872539_874324_-|ribonucleotide-reductase-like-protein
MIGDMDDQPICDAVFADRYALPGEHSRAQACARVARALALAEPMATRSGAARRFYRNLLNGAFGAGRIMARAGAAPDQTMASCFVHPIRAPAALTRFHPNLDEALDEARLALAMGADIGYDFSAIPPAGARPDADHPDSPGVCAALDRFDRIGTQAGERDGRRRAQLAVLRCDHPDLLAFAAAKHRHAGRHARWTTLELAVAATDAFMQAVEQDLPWTLRHTAPPRAAPGGALPGADGAWTYASVPARHVWREIVSAARDGAGPGLVFVDAIDAADPLRGRERIGATSPCGAQPLPPYGSAMLGAIDLSRFVRNPFGAGGEPRFDFAAFDTAVRIEVRLLDNALDVTRWPLAAHARESYQKRRIGVGVTGLADMLAMMRLRYDSPAAREMARYIASDLRHHAYAASAELAAERGAYPLCDRHAHLDALRVGPPLPHAVCHAIERDGLRHSHLTSFAPVIGVSLAFGDHCSPGIEPARAWIEHRPVRAGAAGAPGMRAENHAHRLFRSLRGERAALPDYFATDADVAPGERLAMRVALQPYVDAGIDNTLTLANHYSLEEVNALLFAAWRAKLKSVAIRRADLARDAQPSDDDGV
>NZ_CP016639.1|WP_044368691.1|870653_872465_-|bifunctional-aminoglycoside-phosphotransferase/ATP-binding-protein
MTTGAVAARRLPRRGTARGRRAPSRAFTIHGGDEMRRSRPPKPAKPAAVRRRPHGAARAHAIRGNGPQRRAVRERAARRLSRDIDAALRRASTYPHPAGPIVRIETHLSVVYLVGRFAYKRLKPFDFGFANFTELAARRRACEAELALNRPLAAPIYLAAGPLVRRARGLRLFGAGAAVDHVVRMRRFDERMLFSRLLARGALDAADIDAAATRLAAYHLHAPRDIPRRAYGSARELRRQLDDMLAPLERALGAALPASLRAWCVRRCDELAAHLDARRADGYVRACHGDLHLNNVVKRGRDALMFDCIDFDDALRWIDVINDLSFLLMDLHAHDRAALAHRLLNRWLDETGDFAGLAALPLYVAYRALVRALVATMRAGGDAAARAARIERARRYVDVAAHAARARRPCLLLCHGYSGSGKSVASRALADVSGAIRLSSDSERKRARPFAAVDARPLPASAYTPQQIDAQYERLRALARDVLRAGYTALVDATFLSHARRARFFALARELGVPVYVLDFHASRACLERRVDARAAARDDRSDAGAAVLATQRASADPLDADERARTIGFDTDVPLATLRSAGYWRPVLDVLDAARVDAQATR
>NZ_CP016639.1|WP_082250117.1|870232_870637_-|quinone-oxidoreductase
MRNRCRDTSRQRGPRHRHRRPFARGRLAAPLRSLAHSLSATPCHAAPHRNGNGDGNDDRTPPPAGSARAARRADSRANRTRSRAHARRAGEIRRSRGPRRNGRRPRERRPNARSTHRPSAVDLGQSAPAGRSID
>NZ_CP016639.1|WP_009982175.1|869103_870135_-|hypothetical-protein
METSPLKTTTPEAIPPFNPSASVEDKLRLAIHYAILAPSSHNTQPWRFMVGDGSVMLCADRLRALSVVDPYDRELLISCGAALLNLRVALSRFGFAYVIDMFPSPSDPDVIALVRLDPHGYHDESLVPLFDAILERVTTRTPYANEAVPCDVQRALVDAGAAEGAEIACVDAPHALDEIAELIADADRLQFADPRFRRELANWVHPRRHDDGMPAFAAGVPALLDFATPVVASAIRTFDLGGGLAAMHHKLVDGSPLIVGISTASDDRDAWVAAGQALERVLLVAAAAGLTASYLNQPIEIDALRERLRPLLHVDAHPQLLLRIGRGPVVAHAPRRPLMDVVS
>NZ_CP016639.1|WP_017881570.1|867292_869107_-|SulP-family-inorganic-anion-transporter
MTERERAARGRNDARRGGGDSGDDKAWRRWLPGIATLRTYRRAWLARDLYAGVALTAVLVPVGMSYAQAAGLPVIAGLNASIAALVGYAIFGPSRILVLGPDSALAALIAGAIAPLAHGEPAHAVALAAALALMSGGFCVLAGLLKLGFVTDLLSKPIQYGYLNGLALTLIASQLPSLLGTVPLGGTFVDQVASLAATVAQGRIDFASLALGGGCLAGIALLRRVAPAWPGMLIAVAGASIVAAWLGAAPDAGGAHAHVAYAHVALVGSLAGTLPPLGLPSISLADASRLIAGALAIAMVSVADISVLSHVFAQHDGSETDRNQELCALGAANLLAGMLRGCAVSSSASRTPVALAAGARTQLTSLVAAACIALLLVAPTLLARVPLAALAAVVVYSANALVDVRAIVRLYRVRRGECAVSVLCFAGVVLLGVVPGILLAVGLSLLSFVWRAWHPYDAVLGRVEGMHGYHDVSRHPGAALTRGLVAFRWDAPLFHANATIFRDHVRDAIAEADAPVRCVVIAAEPITDVDVTAADMLATLRDELAARRIALVFAEMKGPVKDRLRTYGLFEKIGADHFFPTVTDAIEHFTRMRKDVATARRARR
>NZ_CP016639.1|WP_004187137.1|866378_866828_+|CBS-domain-containing-protein
MNAAEICTREVVACRRTDTVLDAAHLMRDRHVGDLIVVDDAGHAHAPVGMLTDRDIVLSLIAKEVDPAALFVGEIMSAPAAVVHEHDSLWTIAQRMRLTGVRRMPVVNADGALVGMVSVDDLLASVAALFDEIASISRRQIHFEEKARD
>NZ_CP016639.1|WP_004552281.1|865282_865936_-|SagB/ThcOx-family-dehydrogenase
MSDPELLTYQPIAVALPGPAEAGAPAVIDLPPPDLGAGLPLMSALSLRASTREFSSAALAPTTLGELLWAADGVNRPTTGGRTAPSAHAFNEIDVYAALPDGVYRYDAALHRLLLKHAVDARNLTGYQDFVGAAPLDLIYVVRMSRLLSMPKPLRETFSAVAAGAIAQNVALYCASTGLGCVVRGWINHRLLAEALSLNEDELPILAQTVGKPAAHP
>NZ_CP016639.1|WP_004529498.1|864780_865215_+|Hsp20/alpha-crystallin-family-protein
MSNVTRYDPFSLEPVSDLFQGLFRPLRGIADADDEKLASMKIDVTENDQAYAVKAELPGVDKNDINVQIDGNTVSISAKVERNKELKEGERVIRRERYSGEFARTFSLANELDRDAASAQYQDGVLSLTLPKKASSEKKKLTIG
>NZ_CP016639.1|WP_011204702.1|863246_864374_+|porin
MNAKSIAAAALAVAQAGLAHAQSSVTLYGALDAGVLWQNTSAASFSPTAPNTGAVVRFKDGGVYSSLWGIKGTEDLGGGYRVNFRLQGAFDGGTGKFGLSDAPGAVAAFNQIATLGVSGPFGTFNAGRQIVPMIYAMADTDVRAARFFGSVLTAWLGLNTAAGWPGNSTNAPIGALYDSDALVYQSPAFGGASLALEYAPGGVPGGVQRGARASIVLKYASNALNLAAVYYNGHDTNPAPGASATGLDNNRFVYVGAQYKLKDVAVSASYGNGRNPARGDRVNLDMFAFGLGYRVSPFFRVSSGVYYLKDRNRSANRSTSIVLGADYELSKHTTLYAQGGRVDNRGTMAQMLAYGQPVAPGLATTAAMLGMRHSF
>NZ_CP016639.1|WP_004187469.1|877253_877649_+|conjugal-transfer-protein-TraR
MAAFDEHQLQVLGALLRACRQALQADVRAGERQRADEPYANLAGPAPDEGDEANADLFVDVDHALLGMKLAELRDVDAALQRIARRDYGCCADCGQPIAYERLLARPTALRCAPCQRAHERRFATQPRPSL
>NZ_CP016639.1|WP_004532550.1|877781_880055_+|pyridine-nucleotide-disulfide-oxidoreductase
MREFDYLLVGGGIASVTAARTLRGEDASASIAILCGEPVLPYQRPPLSQEWLMGAVQPASITLHDAAFYAAQRIDIALGVRAEQLDRAKRIVRTSSGATFRYGKLLIATGASAKAPALPGFGLDGVHVLHTFAQAQALKDAAAHARRATVLGGGFLGVEIAATLQALGLQVTLVERAPGVMPSLRAPALGGHFEALCRARGIDVLTRCEVRRVLGAQCVEAVETSDGGTRPCDLFVAAVGVTPNCGWLDGSGLALGDGVEVDAFLQTADPDVFAAGDVAHFDDPIFGVRRRIEHWDNAVRQGRIAARNMLGHRLPYRDVSIFYGSVFGLSYNLLGYPVGATETIERGAFDEASYMQLYLADDVLRAAFTIDRPAVEIAALNDAIRLHVNVAAHKTKLSDPNYPLDKLPVQTILILQGGGALGAFECGAVKALEQHGVRPDVISAVSIGAFNGAIVASHPKGATKALEAFWRELSIALPLPYESQWREAWLSSYVLSFGVPNFLKPQWSQLGFDADRLRAKWTSFFDATAIEQLIARYVDFDSLGMSPTRLLIGAVDVETGEPRIFDSYVDRLSPAHVLASGSLPPGMPWTVVDGRPYWDGGVVSNSPLDLVIARCGQIGGRVFIVDLFSGSKALPTNLVEVMLRREEIAYMDRVRNDLRFEEYASDFRDLVDGILAHVDAPSANEIRQQPLYIRLMGNRAAIDIARITLNREGRLSFIEDYDFSSDAIAQLQQQGYDAALVALANGRSRRRRGRRRA
>NZ_CP016639.1|WP_004523287.1|880338_881997_-|GMC-family-oxidoreductase
MKQQSYDYDYVVVGSGFGGSVSALRLSEKGYRVLVIEQGRRWTPENLPESTWNLSRWQWRPALGLRGFFSMRFFRHVVVLHGNAVGGGSITYANTLLVPPDKVWREGTWAGLEDWERVMPAHYATAKRMLGVVTNRRMDAADFRLKDMAKLIGVEKSFYPTEVGVFFGDDADAPGTRYADPYFGGAGPERTSCIGCGGCMVGCRHGAKNTLDRNYLYLAERLGAQVREQTKVVDVRPLDARADGAAGYAVEAVSLAAGARGAKSRLTCRGVVFAASSLGTQDLLMRLKEKGSLPRLSDALGKRVRTNAESLIGVRFPKSRVDLSKGVAIGSGIYIDEHTHIEATRYPSGSDTMGLLTTVLTRGAPGGLRVLVWLGALAKLVLTRPLSAWRMIDPRGFARETMIFLCMQTLEGHLTMRLKRRWFWPFSKQLATSGAKIPAYIPAANDFAQKAARALGGVPMTSLTEILLNVPMTAHCMGGAAMARDARDGVCDGRSRVFGYRNMYVCDGSVLGANLGVNPSLTITALAEHAMSHVPAAREQRWDSTAETPVAA
>NZ_CP016639.1|WP_082250161.1|882296_882728_-|hypothetical-protein
MHQERRKRNADRHGTHQYDADSRAAPREAPRFEHEPKKQRDAAQHEVDRDRAAREIRERIEHKARPDVRRAERPISQDVAQAPIGAAGAISPSTAHSIFLEIGLALAGRPIQVRRNRAPFTHGTPRWRPARGPTARTASPAPV
>NZ_CP016639.1|WP_004523291.1|882902_883838_-|LysR-family-transcriptional-regulator
MIQNLRQLDLNLLLVFDALMQEQNLSRAAIRLHMSQPAVSNALTRLRQQLGEPLFTRTARGMTPTAQARTLYEPVRQALYLLQIGLGPQADFEPDTHHLFKLSMNDYGQTVLLPDLLAHIKSRAPNVMLSVQSDDAGSIPAQLTTGTLDLAIDYLHFDNPELCYEPLHEEHLVVIGRAGHPAFAGGLALRGYEESGHVSIQPRDRRGSPLEIVLGSARVRRVVHLQVPHYLTIPALVAKSDLLGTIPRRLAERFADVYALQIAPLPIDIAPIQVSLIWHRQQDAQPGLRWLREQVVLTHRAIIGCDEHAPA
>NZ_CP016639.1|WP_009927403.1|883964_884075_+|hypothetical-protein
MQSTGSFDISARRMIEFRSVNKSNHDCPLEKSSGLL
>NZ_CP016639.1|WP_004200700.1|884135_885251_+|hypothetical-protein
MTQDVTVFRARYRASVHPRYNAWLHGGFVLAYGCAAIAFFLKDVARVSAVQWASVPAAFLLFNWLEFTVHRHVGHVKRRFGAMFYRRHTGDHHSFFANEQIAYREARDWRVILFPAWLIVVFSLGLFALHAVLGRFDANVAGLFASTMLGGYLLYECVHACEHLPDAHPLAKWPWIRQMRVLHRVHHRDALMRSCNFDVIWPLMDWLHGTLRWSEAPGADMSTRMRHEIDIACAGADVLAYASDASRWPEWHPSSLRVDGPAGSLAAGSRFDEDVRAAGRVDRLHWDVVRNEPGVMWQARAANTAGSLRILLTYECSGGPRGARFVRTLHYHSPNPLLRLANALVMRGRVERESAYSLTLLKRRLEAARDA
>NZ_CP016639.1|WP_004196898.1|885552_885993_-|SRPBCC-family-protein
MKQQRIEIAEEFDAPVHQVFRFFSEHENLKSIFSPAKIRRISDGEPARNGVGSAREMRVPGAPPFVETVTAYQENELIEYRITRGSPLRDHLGVMRFVPIDERRTYFHYVITFEGKVPFVAPVVRHVLEGSIRRGLGKVATRRLWG
>NZ_CP016639.1|WP_009941253.1|886078_886384_+|hypothetical-protein
MRHDSRLRCTRDDDDIDKCHRQSGRSPLDAEPNRGCAARRLRASGGRRPRGANTEPRRRKPHARVIRQRSWRAARTRPCRRFSAACGRFGQAMARRARPPA
>NZ_CP016639.1|WP_009941251.1|886715_887042_-|hypothetical-protein
MRHACRACGPRVRRTRFCAMRKRGETHGRSLSLNLAHRATGARCARCPHSRHELCTRARAPARERRRCIASRISLITTINFRAVAFRPRLPKHYIDRWNHRSAGTPAA

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Crispr_ID: NZ_CP016639_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP016639_2

1322691-1322783

Orphan

Consensus_repeat	Method
TCGCCGCCGCGCGCGACGACGCGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP016639_2

>merge|NZ_CP016639|2|1322691-1322783|CRISPRCasFinder
TCGCCGCCGCGCGCGACGACGCGCTGAAGGACGCGCTCGCGCAGGCCGCCGCCGAGCGCGAGCGGCTGATCGCCGCCGCGCGCGCCGACGCGC

>NZ_CP016639|2|2|1322691-1322783|CRISPRCasFinder
TCGCCGCCGCGCGCGACGACGCGC	TGAAGGACGCGCTCGCGCAGGCCGCCGCCGAGCGCGAGCGGCTGA
TCGCCGCCGCGCGCGCCGACGCGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP016639.1\|WP_004529178.1\|1326290_1327316_+\|alcohol-dehydrogenase-AdhP	unknown	unknown	gnl\|CDD\|176257
NZ_CP016639.1\|WP_065793697.1\|1318690_1320295_+\|F0F1-ATP-synthase-subunit-beta	unknown	unknown	gnl\|CDD\|183615
NZ_CP016639.1\|WP_004188221.1\|1320284_1320740_+\|F0F1-ATP-synthase-subunit-epsilon	unknown	unknown	gnl\|CDD\|184057
NZ_CP016639.1\|WP_004529184.1\|1313947_1315126_-\|acetate/propionate-family-kinase	unknown	unknown	gnl\|CDD\|235922
NZ_CP016639.1\|WP_004529182.1\|1320736_1321228_+\|AtpZ/AtpI-family-protein	unknown	unknown	gnl\|CDD\|378198
NZ_CP016639.1\|WP_004530244.1\|1330912_1332748_-\|response-regulator	unknown	unknown	gnl\|CDD\|237425
NZ_CP016639.1\|WP_004524989.1\|1327953_1328463_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP016639.1\|WP_058033218.1\|1323218_1325219_+\|F0F1-ATP-synthase-subunit-alpha	unknown	unknown	gnl\|CDD\|183987
NZ_CP016639.1\|WP_004187346.1\|1321525_1322227_+\|F0F1-ATP-synthase-subunit-A	unknown	unknown	gnl\|CDD\|237383
NZ_CP016639.1\|WP_004540537.1\|1318461_1318719_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP016639.1\|WP_065796266.1\|1334024_1337249_-\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|224054
NZ_CP016639.1\|WP_004549747.1\|1321220_1321529_+\|membrane-protein	unknown	unknown	gnl\|CDD\|274462
NZ_CP016639.1\|WP_004198322.1\|1327392_1327896_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP016639.1\|WP_004529175.1\|1330660_1330819_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP016639.1\|WP_017881689.1\|1325215_1326064_+\|F0F1-ATP-synthase-subunit-gamma	unknown	unknown	gnl\|CDD\|376304
NZ_CP016639.1\|WP_050020039.1\|1315122_1316553_-\|bifunctional-enoyl-CoA-hydratase/phosphate-acetyltransferase	unknown	unknown	gnl\|CDD\|236180
NZ_CP016639.1\|WP_004524993.1\|1332897_1334022_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223912
NZ_CP016639.1\|WP_004524990.1\|1329003_1330569_+\|methyl-accepting-chemotaxis-protein	unknown	unknown	gnl\|CDD\|185008
NZ_CP016639.1\|WP_004187193.1\|1322223_1322472_+\|F0F1-ATP-synthase-subunit-C	unknown	unknown	gnl\|CDD\|184067
NZ_CP016639.1\|WP_009950383.1\|1316536_1318330_-\|alpha/beta-fold-hydrolase	unknown	unknown	gnl\|CDD\|213656

Protein	Function_ID	Function_description	E-value
NZ_CP016639.1\|WP_004529178.1\|1326290_1327316_+\|alcohol-dehydrogenase-AdhP	gnl\|CDD\|176257	cd08297, CAD3, Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines.	0
NZ_CP016639.1\|WP_065793697.1\|1318690_1320295_+\|F0F1-ATP-synthase-subunit-beta	gnl\|CDD\|183615	PRK12597, PRK12597, F0F1 ATP synthase subunit beta; Provisional.	0
NZ_CP016639.1\|WP_004188221.1\|1320284_1320740_+\|F0F1-ATP-synthase-subunit-epsilon	gnl\|CDD\|184057	PRK13447, PRK13447, F0F1 ATP synthase subunit epsilon; Provisional.	4.44077e-63
NZ_CP016639.1\|WP_004529184.1\|1313947_1315126_-\|acetate/propionate-family-kinase	gnl\|CDD\|235922	PRK07058, PRK07058, acetate/propionate family kinase.	0
NZ_CP016639.1\|WP_004529182.1\|1320736_1321228_+\|AtpZ/AtpI-family-protein	gnl\|CDD\|378198	pfam09527, ATPase_gene1, Putative F0F1-ATPase subunit Ca2+/Mg2+ transporter. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophobic stretches and is presumed to be a subunit of the enzyme. It carries two transmembrane helices and is a magnesium or calcium uniporter. The atp operon of alkaliphilic Bacillus pseudofirmus OF4, as in most prokaryotes, contains the eight structural genes for the F-ATPase (ATP synthase), which are preceded by an atpI gene that encodes a membrane protein with 2 TMSs. A tenth gene, atpZ, has been found in this operon, which is upstream of and overlapping with atpI.	6.86601e-17
NZ_CP016639.1\|WP_004530244.1\|1330912_1332748_-\|response-regulator	gnl\|CDD\|237425	PRK13557, PRK13557, histidine kinase; Provisional.	6.14575e-132
NZ_CP016639.1\|WP_004524990.1\|1329003_1330569_+\|methyl-accepting-chemotaxis-protein	gnl\|CDD\|185008	PRK15048, PRK15048, methyl-accepting chemotaxis protein II; Provisional.	2.47951e-79
NZ_CP016639.1\|WP_058033218.1\|1323218_1325219_+\|F0F1-ATP-synthase-subunit-alpha	gnl\|CDD\|183987	PRK13343, PRK13343, F0F1 ATP synthase subunit alpha; Provisional.	0
NZ_CP016639.1\|WP_004187346.1\|1321525_1322227_+\|F0F1-ATP-synthase-subunit-A	gnl\|CDD\|237383	PRK13421, PRK13421, F0F1 ATP synthase subunit A; Provisional.	1.54059e-122
NZ_CP016639.1\|WP_004524993.1\|1332897_1334022_-\|ABC-transporter-permease	gnl\|CDD\|223912	COG0842, COG0842, ABC-type multidrug transport system, permease component [Defense mechanisms].	3.93708e-26
NZ_CP016639.1\|WP_065796266.1\|1334024_1337249_-\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|224054	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms].	2.402e-92
NZ_CP016639.1\|WP_004549747.1\|1321220_1321529_+\|membrane-protein	gnl\|CDD\|274462	TIGR03165, F1F0_chp_2, F1/F0 ATPase, Methanosarcina type, subunit 2. Members of this protein family are uncharacterized, highly hydrophobic proteins encoded in the middle of apparent F1/F0 ATPase operons. We note, however, that this protein is both broadly and sparsely distributed. It is found in about only about two percent of microbial genomes sequenced, with the first ten examples found coming from the Euryarchaeota, Chlorobia, Betaproteobacteria, Deltaproteobacteria, and Planctomycetes. In most of these species, surrounding operon appears to represent a second F1/F0 ATPase system, and the member proteins belong to subfamilies with the same phylogenetic distribution as the current protein family.	3.91378e-10
NZ_CP016639.1\|WP_017881689.1\|1325215_1326064_+\|F0F1-ATP-synthase-subunit-gamma	gnl\|CDD\|376304	pfam00231, ATP-synt, ATP synthase.	5.09814e-34
NZ_CP016639.1\|WP_050020039.1\|1315122_1316553_-\|bifunctional-enoyl-CoA-hydratase/phosphate-acetyltransferase	gnl\|CDD\|236180	PRK08190, PRK08190, bifunctional enoyl-CoA hydratase/phosphate acetyltransferase; Validated.	0
NZ_CP016639.1\|WP_004187193.1\|1322223_1322472_+\|F0F1-ATP-synthase-subunit-C	gnl\|CDD\|184067	PRK13468, PRK13468, F0F1 ATP synthase subunit C; Provisional.	4.45015e-37
NZ_CP016639.1\|WP_009950383.1\|1316536_1318330_-\|alpha/beta-fold-hydrolase	gnl\|CDD\|213656	TIGR01838, Poly-beta-hydroxybutyrate_polymerase, poly(R)-hydroxyalkanoic acid synthase, class I. This model represents the class I subfamily of poly(R)-hydroxyalkanoate synthases, which polymerizes hydroxyacyl-CoAs with three to five carbons in the hydroxyacyl backbone into aliphatic esters termed poly(R)-hydroxyalkanoic acids. These polymers accumulate as carbon and energy storage inclusions in many species and can amount to 90 percent of the dry weight of cell. [Fatty acid and phospholipid metabolism, Biosynthesis].	1.63529e-179

>NZ_CP016639.1|WP_004187193.1|1322223_1322472_+|F0F1-ATP-synthase-subunit-C
MNNLIEVVSIAAAALAVSFGAIGPALAEGRAVGAAMDAIARQPDASGTVSRTLFVGLAMIETMAIYCLVVALLLLFANPFVK
>NZ_CP016639.1|WP_004187346.1|1321525_1322227_+|F0F1-ATP-synthase-subunit-A
MNASPLSTVPLFSVGPVGISAPVLATWAIMAVLVALALVARRRLSVDAPSRLQSVLELFVATVDAQIADTMQTPPARYRALIGTIFVLVFCANGASLVPGVEPPTAHLETDAALALVVLAATLYYGVRARGVRGYLATFAEPTWVMIPLNVVEQLTRTFSLIVRLFGNVMSGVFVIGIVLSLAGLFVPIPLMALDLLTGTVQAYIFMVLSMVFIGAAVSGDETSAPRRGQENT
>NZ_CP016639.1|WP_004549747.1|1321220_1321529_+|membrane-protein
MIEMWETARASFDGIAAAIGLALGFAAGACHFVSLGWNSRLFVAGRAGVALALQLARVALAVAVLVVLARAGFGMLVAGSAGFFAARAIAVRRAAALTGARR
>NZ_CP016639.1|WP_004529182.1|1320736_1321228_+|AtpZ/AtpI-family-protein
MMKRRPPEVKREARDDAARGDARHAGAGAAPDDPRGAARRDPPPGSRAARGGATHPAARAAEPAAPKPAADRVERAAHTAAARAARGARDPEPSLGRRLAQIGVLGWTIVAPTLAALALGRWLDRMFATRVFFSAPLLMLGAALGLWLAWRWMKAQQHGDRDD
>NZ_CP016639.1|WP_004188221.1|1320284_1320740_+|F0F1-ATP-synthase-subunit-epsilon
MGAELRVTIATPARVCVDDLPIVSLRAEDASGAFGIRAGHVDFVTLLRASVVRWRTADGATHYAALDGGVLRVTRGARIEIACRDAVLGESLAELEAVVRGVRATQLDEKRRARVDETRLHAQAVRRLLTYLRPEHAKDGVHAPLKPETLE
>NZ_CP016639.1|WP_065793697.1|1318690_1320295_+|F0F1-ATP-synthase-subunit-beta
MADPQATNGTGAVCAERDASDVGDVSDVGDARDEGAGRVVAVRGAVIDVAFDGGALPALNEALTIPVDGAAPILAEVHAHLSDAAVRALALGPTGGLRRGAAVRATGGPIRVPVGDAVLGRLLSVTGAPGDDGAALAADVERRPIHRGAPPLAEQKSANALFATGIKVIDLLAPLAQGGKAAMFGGAGVGKTVLVMELIHAMVERYRGISVFAGIGERSREGHEMLLDMRGSGVLGRTVLVYGQMNEPPGARWRVPLTALAIAEYFRDERAQNVLLLMDNVFRFVQAGAEVSGLLGRLPSRVGYQPTLASEVAALQERIASVEGAAVTAIEAVYVPADDFTDPAVTAIAAHVDSMVVLSRAMAAEGMYPAIDPVASSSILLDPLVVGEAHVEVAIEVRRVIEHYRELQDVIALLGIDELGADDRRLVGRARRLQRFLTQPFAVTEAFTGQAGASVEIADTIAGCRAILRGDCDDWRESSLYMVGTLDDARRKEAAAREADARREAAAAASGAGPGTTSDPASGSAEPQGARHGR
>NZ_CP016639.1|WP_004540537.1|1318461_1318719_-|hypothetical-protein
MPFVACGSATVAPVWLVRRWLHHNGARRPPADLGQETGNRQTKRGIAQSETIDASASGADTVRAASIVDSNQIPQTYAWLQWPYQ
>NZ_CP016639.1|WP_009950383.1|1316536_1318330_-|alpha/beta-fold-hydrolase
MDTRHAPESGAPDAPLPAHPPASYAPESPYRIFDLAKEASVAKLTSGLSPASLQLALADWLIHLAAAPGKRAELATLALRHAALLGQYLLEAATGRTPAAPAQPSPGDRRFRAGAWQLEPYRFWHQSFLLAEQWWRAATRDVPGVSPHHEDVVAFSARQMLDTFAPANYVATNPEIAQRTALTGGANLAQGVWNYLDDVRRLITKQPPAGAEQFELGRNLATTPGRVVFRNHLIELLQYSPTTPDVYAQPVLIVPAWIMKYYILDLSAHNSLIRYLVGEGHTVFCISWRNVDASDRDLSLDDYRKLGVMDALDTIGAIVPGEKIHATGYCLGGTLLSIAAAAMANTGDDRLASITLLAAQTDFAEPGELQLFIDDSEIHFLESMMWERGYLGAHQMAGSFQLLMSNDLIWSRVIHDYLLGERTPMIDLMAWNADSTRMPYRMHSEYLRHLFLDNDLATNRYVIDGQTVSVHNIRAPFFVVGTEHDHIAPWRSVYKIHYLSGSDVTFVLTAGGHNAGIVSEPGHAKRHYRMKMTAAAAPSISPDEWLAGATDFEGSWWPAWHAWLARHSSPQRVAPPPLGKPGARTLGDAPGTYVFQK
>NZ_CP016639.1|WP_050020039.1|1315122_1316553_-|bifunctional-enoyl-CoA-hydratase/phosphate-acetyltransferase
MCSRNKECRVDREILQNRPFDSLAIGDSASLVRTASRDDIDLFAAMSGDVNPAHLDAAFAAHDLFGHVVVHGMWTGALVSAVLGTKLPGPGTIYLDQTLEFRHPVAPGDTITATVTVAEKRPEKRIVLLDTRCTNQDGHVVLRGTATVIAPDTPITWERVPGPEVAVRRHDRYETFVRDAREQPPLRTAIVHPCSPDALRAAIDARDANLIEPILIGPQAKIRAIADAAGVDLAGVPIEAVEHSHAAAARAVEMGGAGEVAALMKGSLHTDELLAAVIGPASRLRTERRISHVYAMDVPAYPKPLLITDAAINIAPTLEQKRDICQNAVDLLHVLGVERPRVAVLAAVETVNPKMPSTLDAAALTVMAARGQIAGAIVDGPLAFDNAVSAVAAMSKGIASPVAGDADVLLVPDLEAGNMLAKQLMYFAGADAAGLVLGARLPIILTSRADSLRVRIASAALAKLVAERTRAGALAS
>NZ_CP016639.1|WP_004529184.1|1313947_1315126_-|acetate/propionate-family-kinase
MSEPLLLTFNAGSSTLKIGLYSVANGEPAPLGRGKIDFNRAPLQFEYANGGEAHAVPLAAPVTDDLHAVLDEALGWIDAHLSVHELVSVGHRVVHGGDTFDGPVRIDERTLDAIAALVPLAPLHQPQSVRLIRALRHLRPHLPQVASFDTAFHRTQSDLVRRFALPRALFDAGIKRYGFHGLSYRYVAGRLRERHPSIARGKVVAAHLGSGASLCALDAGVSRDTSMGFSTLDGIPMATRCGALDAGVVLHLQKTLGRTLDDVEQMLYHRSGLLGVSGVSGDARALLADPSAGARDALELFAFRIAGETARLAATLGGLDALVFTAGIGEHQPQTRAAVCERLRWLGVELDAHANARNAETVSRDGSRVAVLVVPTDEEQVIARDAASVLHA
>NZ_CP016639.1|WP_058033218.1|1323218_1325219_+|F0F1-ATP-synthase-subunit-alpha
MTPTPDAPAAADAATGAGWLARRRGALARVALAPVAQAIGRVERVADGIAFVSGLEDTMLNEVLRFEGGVTGFAHTLDEDLISVVLLDPDAGVRAQTAVARTGAVLEVPAGPQLLGRVVDPLGRPLDGGAPLDAAHTLPIERAAPAIIERDLVSEPLDTGVLIVDALFTIGRGQRELIIGDRATGKTSLAIDAIVNQRHSDVICVYVAIGQRASAVRRVIDAVRRYGAPERCVFVVAPAACAPGLQWIAPFAGFSIAEYFRDRGQHALVVVDDLTKHAATHRELALLTREPPGREAYPGDIFYVHARLLERAAKLSAALGGGSLSALPIAETDAGNLAAYIPTNLISITDGQIVLDSALFAANQRPAVDVGLSVSRVGGKAQHPALRAASGRLRLDYAQFLELEAFTRFGGLTDARLRAQITRGERIRALITQPRFRALRTLDEVVLLKALAAGALDAMSPDLVAPLRERLPAWLDARIAALTPALAPPRDWLADDAALDALAESVGELIERIAADAARRATAGMPAEDAAGDIGGAFGGEQARGDADRDADHGANREVSPEASREVSREVSREVSHEANRDAAADAARVAGRAPGRAEPDRAAPRAMPDGPPRAQADGDRASASRPRPDARGDAARTAPSPQGGADANVNADANVDAEAEARHKR
>NZ_CP016639.1|WP_017881689.1|1325215_1326064_+|F0F1-ATP-synthase-subunit-gamma
MSDKLAAIEARTDTARQLQTVIGAMQGVAAARAHEAQQRLPGIRASAATVGAAIGDALSAGARSGETAAGARAAPRARLVVVLCSEQGFVGAYNAQLIEHATRPEPSVSREYMMVGSRGAMLADAGGVPLVWRTPMAARADDVVHLANRITDALYAQLAKRGAQPVSIVHAMPGGAARLEVTERRLLPFDYARFDTAPRAQPPLVHLPPATLLAELAQAYVFVELCEAAMLAFAAENEARTRAMIAARESVERALGDLLQAYRIARQDEITADIVELAASGL
>NZ_CP016639.1|WP_004529178.1|1326290_1327316_+|alcohol-dehydrogenase-AdhP
MAQYMKAAVVHAFGEPLRIEEVPVPTPGAGQILVNVKASGVCHTDLHAADGDWPVKPTLPFIPGHEGVGFVAAVGEGVRHVKEGDRVGVPWLYTACGHCEYCQTGWETLCHEQQNTGYSVNGSYAEYVLADPNYVGHLPSNVAFDEIAPILCAGVTVYKGIRVTDTRPGQWIAISGIGGLGHVAVQYAKAMGLHVVAVDVAPQKLELARKLGAAFVVDASKDDPAAVIQKEIGGVHGVLVTAVSRGAFAQALGMVRRGGTVSLNGLPPGDFPLPIFSTVLNGITVRGSIVGTRRDLQESLDFAAEGLVRAHIHRDKLEHINGVFSALREGKVDGRIVLTGQ
>NZ_CP016639.1|WP_004198322.1|1327392_1327896_+|hypothetical-protein
MRGAGRASPSRARRYENVSKEPNTHREAGAPVHRYRLQVRNMNGECRTYELRLSSLDDGYTLEIDEWLNFPDTHLGDVTPVHVSRPVQFAVPAHEFYRRRRAFRTELIESVAAALRAGEVVRMRDSPDEYPGGHAGNPWVNWIRADLRANPGGRPPPVGDDMQDLIH
>NZ_CP016639.1|WP_004524989.1|1327953_1328463_-|hypothetical-protein
MRRIYFLLPDADTARAIVDELLLKRIEWRHIHVVANDRVPLENLPEASIAQSSDLLPALARGTAAGGVTGALAGLAAIAFPPAGLTIAGGAVVAFAIAGAGFGAWVGTMIGVSVPNTRLKHFEDAVDNGELLMMIDVHRDRVEEIEALVKQHHPNAHLEGTDPTIPAFP
>NZ_CP016639.1|WP_004524990.1|1329003_1330569_+|methyl-accepting-chemotaxis-protein
MPTLSFRQKLWLPLVISLIALLLVSISSAWLSYQTRMEERRNDLTNVAHVGLSIVREYAALAQRGVLTDAQARKEALERLRSVRYGSDGYFIVIDSSPRMIMHPIKPDTVGKDLRHVADADGRHHYLTFASVAQSPQGGFVDYVFAHPNAHPAKAVDKLGYVIRYAPWDWIISTGAYIDDIQAAFAKSLCLSAGVFALLAALLALSVVYTNRGIERMIGGDPRIAAHMAGVIASGDLATPFATRREDRSSLMFAISQMRDALANAVAQIRASAGYVATTAGEIADSNMDLSSHTECQATALQQAASSMQRLTERVRDTADRARAASELAGSAARITDRGGDMVVRVVAAMNDIRAESRKMVDIIGVIEGIAFQTNILALNAAVEAARAGNEGRGFAVVASEVRVLAQRSASAAKDIRALIGRAAERVGNGAELVEATGATIGEAQHAICRVTGIVQDIAAAATDQSQGLEQINAAVSQMDSVTRRNATLVEHAAIAAQSLNEQSRCLQDAVAAFRTEALGC
>NZ_CP016639.1|WP_004529175.1|1330660_1330819_-|hypothetical-protein
MRARRSHGAGIRLGFDKPSGAHSSTHDGWVQTDIAMRLLQISLMPDQALANE
>NZ_CP016639.1|WP_004530244.1|1330912_1332748_-|response-regulator
MHVEVFAQHPSCPGWHGEMARRIRAFDWSATELGPLERWPASLVAAVRTVLASPVPLVMLWGASGYMLYNDAYAAFAGGRHPYLLGQPVELGWPEVADFNRNVMRTCLAGGALSYRDKALVLLRNGRPEEVWMDLYYSPLAGDDGAPAGVLAVVVETTERVLAARHRDRAKAALHETNAELRRLTETLEQRVADAITERASIEEQLRQAQKMEAIGSLTGGIAHDFNNVLQVVSSNLQMLSAELGEDARAQRRIASAANAVARGAQLASHLLAFARRQPLAPAVLEPRGLIDGMREMLHRALGESVHVDADLRDDVWNVLADRHQFENALLNLAINARDAMRGEGTLKITACNIVLEAGRHARRNGLPPGEYVAFDIADNGVGMTPDILERVFEPFFTTKPDGQGTGLGLSMVFGFVKQSGGHTSIESAPGRGTTVRLLLPRCREAPAGEPAAQRRLPAEGGRETILVVEDDADVRLAVVDMLAQLGYKVITASDGEAGLLALESGAPIDLLFTDVIMPGRIKGGELARRAAQRVPPVPVLFTSGYTRDEIFHAGRLDPGVMLLGKPYRRDELAHKVRSVLDAHASARRARGARHAQADPRAKTAAARVQR
>NZ_CP016639.1|WP_004524993.1|1332897_1334022_-|ABC-transporter-permease
MRRLAIVYRLGVKELWSLVRDPILLVLIAYTFTASIYSAATARPDTLHMAPIAIIDEDASPLSARIASAFFPPQFALPRMVTLAEADRGMDAGDFTFALDIPPNFQRDVLAGRPAQIQLNVDATRMSQAFTGNGYVQQIVSGEIDDFARRYRANTAPPVDIAMHMRFNPNLDQTWFGSLMEVINNVTLLSMVLTGAALIREREHGTIEHLLVMPVTPGEIMLAKVWSMGLVVACAAAFSLAFVVRGALHVPIEGSVALFVIGMAIHLFATTSMGIFLATLVRSMPQFGMLLVLVLLPLQLLSGSLTPRESMPFAVQNIMLAAPTTHFVEIGQAILYRGAGIETVWRQFLILAVIGTALFLLSLKRFRKTIGQMA
>NZ_CP016639.1|WP_065796266.1|1334024_1337249_-|ATP-binding-cassette-domain-containing-protein
MSAPSVVRFSDVSLRYGKTVALERITLEIPAGLTIGLIGPDGVGKSSLLALAAGARALQTGAVDALGGDMRSRRHRERVCRRIAYMPQGLGKNLYPTLSVEENLQFFARLFGHDADERRRRIDALTRSTGLFAFLSRPAGKLSGGMKQKLGLCCALIHDPDLLILDEPTTGVDPLARAQFWDLIARIRSERPAMSVIVATAYMDEAQRFDWLIAMDAGRVLATGAPAELLARTGCDSLEAAFIALLPEDERRGHKPVTLEPLRADAQTGTAIEARGLTMRFGDFTAVDHVSFRIRRGEIFGFLGSNGCGKSTTMKMLTGLLPATEGTAQLFGKTVDPKDINTRRRVGYMSQAFSLYSELTVRQNLVLHARLFGVPAAEIDARVDEMARRFGLADIYDMLPDSLPLGMRQRLSLAVAMVHKPELLILDEPTSGVDPVARDSFWQLMIDLARRDRVTIFISTHFMNEAQRCDRISLMHAGRVLASDAPAALVRARGAATLEEAFIGYLVDASAQEAQGGAGGRPGAGERAAGESLAGRGAATDGDADGAHARPAAYANGAAQHRAPDADAAGTDVAAETGARDDARTAHAAGHSAGNDVRATVGSEVGSEVASEAGLAASAESGSERGVAHGAERAREPAADAGAAIDVEPGASAESATAAVAPARHAESAATSPRAGNAPAGTPFAAAPPSHAAPAEPPHRAFSAQRALSYMWREMLELRRDPVRATLALIGSLVLMCVIGIGISLDVEDLTYAVLDRDQTELSHDYALNLSGSRYFVERPPIADYAALDRRMRDGELSLAIEIPPNFARDVERGAPAQIGMWIDGAMPQRAETIRGYAIGMHTMWLADKARHRLGVTLAPRAEVVTRYRYNPDVKSLPAMIPAVMPLLLLMLPAMLTALAVVRERELGSILNLYVTPVTRTEFLIGKQVPYVVLAMLNFLLMTMLARIAFDVPVKGSFMTLLLAVLIFNVVATGIGLLASTFTRSQVAAIVMTIIGTMIPTVQFAGLLTPLSSLEGTGRLIGLVYPATYMLSISRGVFNKALSLHELYSQFWPLAASVPVILGATILLLKKQER

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Crispr_ID: NZ_CP016639_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP016639_3

2833149-2833313

Orphan

Consensus_repeat	Method
GCGAGCGCGGCGAGCGCGGCCGCG	PILER-CR

2 spacers

The CRISPR arrays of NZ_CP016639_3

>merge|NZ_CP016639|3|2833149-2833313|PILER-CR
GCGAGCGCGGCGAGCGCGGCGGACAGGCCGCTCGCGACATAGCTCGACGCGACGTAGCGGCGCGCGTCGACGCCCGCGGCGAGCGCGGCCGCGCGATGGGCGCCGAGCGCGTGCAGCGCGAGCCCGTAACGGGTGCGATGGGCGAGCGCGGCGAGCACGGCCGCG

>NZ_CP016639|3|1|2833149-2833313|PILER-CR
GCGAGCGCGGCGAGCGCGGCGGAC	AGGCCGCTCGCGACATAGCTCGACGCGACGTAGCGGCGCGCGTCGACGCCCGCG
GCGAGCGCGGCCGCGCGATGGGCG	CCGAGCGCGTGCAGCGCGAGCCCGTAACGGGTGCGATGGGCGAGCGCG
GCGAGCACGGCCGCG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP016639.1\|WP_065793766.1\|2833947_2835765_-\|sugar-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224053
NZ_CP016639.1\|WP_004202590.1\|2838929_2840189_-\|monooxygenase	unknown	unknown	gnl\|CDD\|173852
NZ_CP016639.1\|WP_011205514.1\|2840392_2841862_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|340929
NZ_CP016639.1\|WP_122633588.1\|2829215_2831681_+\|TonB-dependent-receptor	unknown	unknown	gnl\|CDD\|273805
NZ_CP016639.1\|WP_004524117.1\|2827847_2828852_+\|FecR-family-protein	unknown	unknown	gnl\|CDD\|236622
NZ_CP016639.1\|WP_004548936.1\|2831892_2832873_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|119321
NZ_CP016639.1\|WP_004542841.1\|2825458_2826445_+\|YceI-family-protein	unknown	unknown	gnl\|CDD\|377274
NZ_CP016639.1\|WP_004543649.1\|2842998_2843199_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP016639.1\|WP_004539128.1\|2842294_2842543_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP016639.1\|WP_076886874.1\|2827064_2827283_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP016639.1\|WP_004524130.1\|2843191_2843464_+\|DUF4148-domain-containing-protein	unknown	unknown	gnl\|CDD\|379321
NZ_CP016639.1\|WP_155122761.1\|2836898_2837327_-\|sugar-ABC-transporter-substrate-binding-protein	unknown	unknown	unknown
NZ_CP016639.1\|WP_004184766.1\|2843567_2844962_-\|heavy-metal-sensor-histidine-kinase-IrlS	unknown	unknown	gnl\|CDD\|273593
NZ_CP016639.1\|WP_004553369.1\|2824565_2825390_+\|anti-sigma-factor	unknown	unknown	gnl\|CDD\|227949
NZ_CP016639.1\|WP_004524116.1\|2827341_2827851_+\|sigma-70-family-RNA-polymerase-sigma-factor	unknown	unknown	gnl\|CDD\|171561
NZ_CP016639.1\|WP_009968316.1\|2838515_2838767_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP016639.1\|WP_017882257.1\|2826840_2827068_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP016639.1\|WP_004199294.1\|2824047_2824569_+\|sigma-70-family-RNA-polymerase-sigma-factor	unknown	unknown	gnl\|CDD\|237123
NZ_CP016639.1\|WP_011205512.1\|2837441_2838182_+\|isoprenylcysteine-carboxylmethyltransferase-family-protein	unknown	unknown	gnl\|CDD\|224931
NZ_CP016639.1\|WP_004198481.1\|2826484_2826844_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226765

Protein	Function_ID	Function_description	E-value
NZ_CP016639.1\|WP_065793766.1\|2833947_2835765_-\|sugar-ABC-transporter-ATP-binding-protein	gnl\|CDD\|224053	COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism].	1.0664e-176
NZ_CP016639.1\|WP_004202590.1\|2838929_2840189_-\|monooxygenase	gnl\|CDD\|173852	cd01163, DszC, Dibenzothiophene (DBT) desulfurization enzyme C. DszC is a flavin reductase dependent enzyme, which catalyzes the first two steps of DBT desulfurization in mesophilic bacteria. DszC converts DBT to DBT-sulfoxide, which is then converted to DBT-sulfone. Bacteria with this enzyme are candidates for the removal of organic sulfur compounds from fossil fuels, which pollute the environment. An equivalent enzyme tdsC, is found in thermophilic bacteria. This alignment also contains a closely related uncharacterized subgroup.	4.02374e-137
NZ_CP016639.1\|WP_011205514.1\|2840392_2841862_-\|MFS-transporter	gnl\|CDD\|340929	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily. This subfamily is composed of Acinetobacter sp. Cis,cis-muconate transport protein (MucK), Escherichia coli putative sialic acid transporter 1, and similar proteins. MucK functions in the uptake of muconate and allows Acinetobacter calcoaceticus ADP1 (BD413) to grow on exogenous cis,cis-muconate as the sole carbon source. The MucK subfamily belongs to the Metazoan Synaptic Vesicle Glycoprotein 2 (SV2) and related small molecule transporter family (SV2-like) of the Major Facilitator Superfamily (MFS) of membrane transport proteins. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	5.3343e-36
NZ_CP016639.1\|WP_004524117.1\|2827847_2828852_+\|FecR-family-protein	gnl\|CDD\|236622	PRK09774, PRK09774, fec operon regulator FecR; Reviewed.	2.1512e-74
NZ_CP016639.1\|WP_004548936.1\|2831892_2832873_-\|ABC-transporter-permease	gnl\|CDD\|119321	cd06579, TM_PBP1_transp_AraH_like, Transmembrane subunit (TM) of Escherichia coli AraH and related proteins. E. coli AraH is the TM of a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of the monosaccharide arabinose. This group also contains E. coli RbsC, AlsC, and MglC, which are TMs of other monosaccharide transporters, the ribose transporter, the D-allose transporter and the galactose transporter, respectively. The D-allose transporter may also be involved in low affinity ribose transport. These transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. Proteins in this subgroup have a single TM which homodimerizes to generate the transmembrane pore.	4.49135e-52
NZ_CP016639.1\|WP_004542841.1\|2825458_2826445_+\|YceI-family-protein	gnl\|CDD\|377274	pfam04264, YceI, YceI-like domain. E. coli YceI is a base-induced periplasmic protein. The recent structure of a member of this family shows that it binds to poly-isoprenoid. The structure consists of an extended, eight-stranded, antiparallel beta-barrel that resembles the lipocalin fold.	4.12408e-28
NZ_CP016639.1\|WP_122633588.1\|2829215_2831681_+\|TonB-dependent-receptor	gnl\|CDD\|273805	TIGR01783, Ferrienterobactin_receptor, TonB-dependent siderophore receptor. This subfamily model encompasses a wide variety of TonB-dependent outer membrane siderophore receptors. It has no overlap with TonB receptors known to transport other substances, but is likely incomplete due to lack of characterizations. It is likely that genuine siderophore receptors will be identified which score below the noise cutoff to this model at which point the model should be updated. [Transport and binding proteins, Cations and iron carrying compounds, Transport and binding proteins, Porins].	5.5471e-86
NZ_CP016639.1\|WP_004524130.1\|2843191_2843464_+\|DUF4148-domain-containing-protein	gnl\|CDD\|379321	pfam13663, DUF4148, Domain of unknown function (DUF4148).	9.38719e-09
NZ_CP016639.1\|WP_004184766.1\|2843567_2844962_-\|heavy-metal-sensor-histidine-kinase-IrlS	gnl\|CDD\|273593	TIGR01386, Probable_sensor_protein_PcoS, heavy metal sensor kinase. Members of this family contain a sensor histidine kinase domain (pfam00512) and a domain found in bacterial signal proteins (pfam00672). This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc.	0
NZ_CP016639.1\|WP_004553369.1\|2824565_2825390_+\|anti-sigma-factor	gnl\|CDD\|227949	COG5662, COG5662, Predicted transmembrane transcriptional regulator (anti-sigma factor) [Transcription].	1.30426e-18
NZ_CP016639.1\|WP_004524116.1\|2827341_2827851_+\|sigma-70-family-RNA-polymerase-sigma-factor	gnl\|CDD\|171561	PRK12528, PRK12528, RNA polymerase sigma factor; Provisional.	7.12237e-71
NZ_CP016639.1\|WP_004199294.1\|2824047_2824569_+\|sigma-70-family-RNA-polymerase-sigma-factor	gnl\|CDD\|237123	PRK12511, PRK12511, RNA polymerase sigma factor; Provisional.	2.21088e-40
NZ_CP016639.1\|WP_011205512.1\|2837441_2838182_+\|isoprenylcysteine-carboxylmethyltransferase-family-protein	gnl\|CDD\|224931	COG2020, STE14, Putative protein-S-isoprenylcysteine methyltransferase [Posttranslational modification, protein turnover, chaperones].	3.08543e-14
NZ_CP016639.1\|WP_004198481.1\|2826484_2826844_+\|hypothetical-protein	gnl\|CDD\|226765	COG4315, COG4315, Uncharacterized protein conserved in bacteria [Function unknown].	1.42598e-30

>NZ_CP016639.1|WP_004548936.1|2831892_2832873_-|ABC-transporter-permease
MRDATDRLSRLAALGALAAVLAFFAVAAPGFATLANVERVLVNNFALLAIAALGMTLALSIGAIDLSLGTAIDVASLAFVCALAHRAGCASAALAGLGAALALGAANALLVTRLGIAPFLATLGTLFIGQTIQQLATDGGQPIYLLSTAPPPAFDALAHGVWLGVAAPLWIVAALAGALHVALERSTLGRQARALGAQPGVARHSGLRVGALAAGVFVASALVYGVAGLVLSSTVRSYAPQAGNAYLLNAIGATFIGATLSEARRPNVAGTLLGVLLVSFVANGLLLIGWNFYWQQVASGALVFAVLALGSGVGRERRARDAGQSG
>NZ_CP016639.1|WP_122633588.1|2829215_2831681_+|TonB-dependent-receptor
MHAPCAPQLAPQFAPRRVVARVAAAALFSACAAPGVSGAAEPAAATRAYDIPAGPLDAALTRFGREAGILLSFPGELTTGLRSPGLHGRADPAAALDRLLTGTGLVALRQPSGGYTLARLPGPAAAGADAALAADTTLPTVAVRASGPHADSYRPPREAAGLRSDAPLAEVPQAVAIVAQQVLRDQRPRNLDDALANVSGITQGNTLGSTQDTVMKRGFGDNRDGSVMRNGMPIVQGRSLNATTDSVEVLKGPASLLYGIMDPGGVINVVTKQPQLARRHAISALGSTYGGGRNGGELTFDSTGAIGESRVAYRLIVDQTNEQYWRNYGEHRETLVAPSLAWYGRDTQVVLSYEYRRFLMPFDRGTALDPRTNAPLAIPARRRLDEPFNDMRGESNLAQLAIDHQLAPDWKVHVGYSYNRETYDANQIRITAVDPLKGTLTRSNDATHGSRSTDSYGIAYVDGRVTLAGMRHDVQFGVDGEYRQVYRADMLRQPIKTPFSYLNPTYGLVPPSTSVSASDSDQSDTLHTASLFFQDSIHLSERWMLVGGARWVRYSQLAGRGRPFQVNTNLSGTKWLPRAGIVYKWNDALSLYGSYTQSLKPTSKIAPMAGGYVIDGSTAPEEGASWELGAKLDMPGGLAGTLAFFDIDKKHVLVSQYDDATNQTAWRTSGRARSRGIELDVSGRIGARWNVIASYAYIDAKTTEDPLYAGNRLWNVARHTASLAAVYDVGTVLGGDDLRIGAAGRYVGARPGDSANSFTLPAYATADAFATYDTRLGKQKLQFQLNVKNLFNRTYYPSSVNRFFVSVGDARQVSLLTTLQF
>NZ_CP016639.1|WP_004524117.1|2827847_2828852_+|FecR-family-protein
MSGAKPAGGPPAVPERVARRAVQWWVELGAAPASDATRARLARWRAEHPAHDAAWRHIEAVNGRLGHVASALSARAARAALLPPRSRGRRAALKALAVLLFAGGGAWTGQAYLPWRAWGADVRTALGERRTITLADGTTVVLNTDTAIDIRFDDATRGVRLLRGEIMVTSGRDAARAVPRALVIATAHGDVRPVGTRFSVRERGDATRVDVFDGAVRIAPRRAVGRAPLITAGHGADFTRDALAGPPRVLGASAGAWVDGILVASNLRLADLLAEIDRYRPGRVRCDAAVANLRVSGTYPLDDTDRILDTLRETLPVDVEYLSRYWVTVVAARD
>NZ_CP016639.1|WP_004524116.1|2827341_2827851_+|sigma-70-family-RNA-polymerase-sigma-factor
MPANTLRLQREIAALYTGHRGWLHGWLSKKLGCGERAADLVHDTFIRLLARDEPIDAAEPRAFLTTVAQRVLYNHWRRERLERAYLDALAQWPEAVAPSPETRAVLFETLVEVDRMLDGLPAVVRRAFLLAQLDGMTHAQIAAELRVSLATVKRYLVKAGAQCYFAIAA
>NZ_CP016639.1|WP_076886874.1|2827064_2827283_+|hypothetical-protein
MSHGRGPFVVRSRRRRSRDFPPERRIGEPRSARAGRAGAPLRRGGRASRATQASRRPTDRADAFTVRLQICI
>NZ_CP016639.1|WP_017882257.1|2826840_2827068_+|hypothetical-protein
MTGKGGAAANPRAATAIVVAASGSISPASRRTALSTMKATANATARRRDGGTMKAPKEPIASGGAVLAGSVESPV
>NZ_CP016639.1|WP_004198481.1|2826484_2826844_+|hypothetical-protein
MIRNVLIALVCAAPVAALAEPPKAAGGMVVDDDGMTLYTFDRDTMPGKSACTGGCTANWPAALADAYDKPGGALGFIAAAGGKHQWTYKGRPLYRFSGDAKPGQHTGDGFGGMWHVARP
>NZ_CP016639.1|WP_004542841.1|2825458_2826445_+|YceI-family-protein
MDAAGSFASFAATLACALSAWLAPSAGIAQTAWPPDAPRVAGASGPPRTPGLARTPAAVTDAPGAATAGALAASPPAATRYRLDPRHSGVTFRVDNFWHAHLTMRFARMRAELSDVGDDRLASRVDVTVDAASLGANVPFVAALVKGSAMLDVARYPEIRFVGTRFERTGATTGVLTGELTIRAMTRPITLAVRFDAGRQLEPDTGARAEREGDESGESGESNPAERRAGQGRRAAELRDGRPRDAGPGVADSRDAMRRETDSGSAHRGAEPPERIARAAPDAARPLAFVADGHFSRTAFGLSRWLPAVGDDVRLRIRAEFVRARADP
>NZ_CP016639.1|WP_004553369.1|2824565_2825390_+|anti-sigma-factor
MSDDPDLCVAPESDEPGLLALSAFVDGELPDAQSRAMARRLASDPRAAGIAAHYRAQRAALRALFADPVAPRHGPCVAWPVRTPWWRRAAFAGGALAAGVALGWLGGALAPRFAPSAALQWVAPAAAQRAFARDADLAYALYAPDARHPVEIAVGRDGAPLAWLSARVGRRIAAPSLREYGFALLGARLLPGAGGPAAQFMYENAAGERLALYVSASAQREAAVRPWRDGGRHTFYWVSERTAYALSGQLDEGRLRTIAADVCGELGGHPQRWR
>NZ_CP016639.1|WP_004199294.1|2824047_2824569_+|sigma-70-family-RNA-polymerase-sigma-factor
MSFESDVVGWLPQLRRYARALTGDPAWADDLVQDTVERAFSRMRAFRPDSNLRAWLLTILRHLYIDQLRARREFAVDDDEGPWRTLEAPAGQIDALVLRDVQRMLYRLPLEQREVLLLVCVEELSYQDASAVLGVPVGTVMSRLSRARERMRALLTDAPLRPPLSLTAARHHR
>NZ_CP016639.1|WP_065793766.1|2833947_2835765_-|sugar-ABC-transporter-ATP-binding-protein
MKAALTTAAASAAAAPDAAGAPLALDVRRVVKRFGGVAALRGASLAVTRGTVHGLIGQNGAGKSTLVKLLAGLHAPDEGEITVGGVPFASGGGGSRASAGAARRHSTGIGFIHQERLLPATFTVAEALFFPHPPTLGGRASRLARLLPLDVKRMRRDCRAVLHTQFGLDLAPDRLIGELSVAEQQIVQITRALLGRHEILVFDEPSAALVSSEVDRLLRTIERLRANGHTILYVSHYLDEIARVCDRVSVLRDGADVAHFEARAVSRDTLVAAMIGAPQPAAAAPSAATARAAARADARVSARADAWGDDPHRAPAGADPARLGARAAPGAIALEARDLALPGRFGPLSLAVRRGEIVGLTGGLGSGGKDVIRALFGLARGVRGSIAVDGRPARVRRPHDAVAHGIALVPENRAAHGVALTLPVRENVVLADLSSVSRFGLVHGRREADVARALIRRLDIRPARPDLPARFLSGGNQQKVALAKWLGRASTVYLLDEPTVGVDVGAKAQIYRLIDALARAGAAVLLFSSDLTELLDVTDRVYVMARGEIVAQCASAETTTQDVLAWATLARDARPGGGAGAHDAAARTGTPGAAGAASSAAKVAT
>NZ_CP016639.1|WP_155122761.1|2836898_2837327_-|sugar-ABC-transporter-substrate-binding-protein
MQPFAKLPSKRAAPPPRRIMRRGGLSYGFSCMPARNFALAERFREDFVSFDAARAAAFSDWLAISRFRFNGASSGLFSIALKFICDCPIPIETTRRRSRVPTDIGVGIDAREAAGPASARAGRVRFPPRIFACAARAFAAIP
>NZ_CP016639.1|WP_011205512.1|2837441_2838182_+|isoprenylcysteine-carboxylmethyltransferase-family-protein
MRRTGVFAMEHEVRPSMATTRRHATATALAAAARPCAAPHADSFLGILIEVFARVVAALALGVFAYAAYLQWRLDPSRITLILLAVSTTLTVGLSLFAEPPKKRDWSPLALFFSVGGTFYYLVFQLTASRQLLPEAAGAAIQLIGLFWQLFAKVSLRKSFGILPANRGIVSRGAYRFVRHPMYLGYLIIDAGFLLTNFSARNLIAVALQIGLQLGRIRREERLLSEDAAYRAYRRSVRYRVIPGLF
>NZ_CP016639.1|WP_009968316.1|2838515_2838767_-|hypothetical-protein
MFSTLSHVLPRVALLGEPLANAPFVDGEITRPFRDGFWLLPHSTLCLPLAASDMVIVEPDWPGSAGALAGRQLDAGRQSPSPL
>NZ_CP016639.1|WP_004202590.1|2838929_2840189_-|monooxygenase
MSHAPADPTRSTGADYASLAARFRPIFARIAEGAIERDRTRALPHEPIRWLKEAGFGALRVPVHAGGAGASVPQLVQLLIELAAADSNLPQALRGHFAFVEDWLNAPPDAARRAWFDRFASGQLVGNAWTEVGDVALGEVRTKVAKRDGGWVVNGEKYYSTGAIFADWIDVYAQRTDDGGPVIAAVAARQDGVILGDDWDGFGQATTGSGTTRFVDAHVDEANVIDFARRFKYQTAFYQLFHLATLAGIGRAVERDASALVRGRRRVYSHGNAPRVSDDAQILQVVGEISAWAYAAEAIALRAAQPSQRAYEARVGGDAAAEHDANVAAEIESAQGQLVVSELVLRAATHLFDALGASATRATNALDRHWRNARTVASHNPLVYKARIVGDRAVNGTEPPYVWQIGAGPGGPREPEQAA
>NZ_CP016639.1|WP_011205514.1|2840392_2841862_-|MFS-transporter
MSTLDLDAPISTPIRTASDVSRLINASGARANHARVIVLLALGGVFLDAYDLTTLSYGIEDVTREFGLTPALSGLVSASIMIGTILGSLLGGWFTDKVGRYRVFMADMLCFVVAAIVAGLAPNVGVLIAARFVMGLGVGIDLPVAMAFLAEFSKFGGRGNKASRLAAWCPMWYAASSVCFLIVFGLYFALPAEHARWLWRASLIFGAVPALAIIAVRGRYMNESPLWAANQGKLRDAARILRESYGIRAHAADDTPRAAPSQPPVSFRVLFRQPYLPRTLVASAMNLCIPFEYTAIAFFLPTILTQFLGAGVFETIAATLALNVLFALTGGLLGMRLAYRLPSRRVAIAGFALQAAALVTLALLGHPQTALGIGAAVLMLGLWLFAEGFGPGAQMMIYPALSYPASIRGTGLGFGRALTGIGSAFALFVLPILNARLGAGMFWIVAIAAFVPIVFLAAIRFEPTARDVDVDIDAGSRAQGDRARVRAAA
>NZ_CP016639.1|WP_004539128.1|2842294_2842543_-|hypothetical-protein
MKAPIIAIAFGIALAACAPLRQDSRSGEAGPPIAAPNRGGGNTPPSGARRAANEVVDYAGRPCVNQTLYVKTHPCIFPRLQR
>NZ_CP016639.1|WP_004543649.1|2842998_2843199_-|hypothetical-protein
MFIASSPSSGSLSDDSCLYFERRAVRNHERAMTNPSSARGAASSARADASMTRISCSRQRGAAAMP
>NZ_CP016639.1|WP_004524130.1|2843191_2843464_+|DUF4148-domain-containing-protein
MNTKTTIVWATAAALTALALSPAAFAQGKTRDEVRQELIRAQHEGVVPAGKNDYPPSAALVARNKELHAISVHGGKTDLALDQHDQTVAR
>NZ_CP016639.1|WP_004184766.1|2843567_2844962_-|heavy-metal-sensor-histidine-kinase-IrlS
MIRRLLPRTLRARLTALIILSTAATLALSGVALYSALHNRLVGMSSYEMSATLAAMRTHLANVANVDDIPRKSDLWIDQLHGHQNLDLAIYDTDGRLRFATRGFVAPRPALGAPQTRVPASAAPAGATFSYLADDAPLRGGNPRTARIVVQYDGKNDHALLRAYAYTVVVIEVLAVVLTAALAYGIAMLGLSPLRRLVARAEQMSSSRLAQPLPELDTSGELKEMEHAFNAMLKRLDESFVRLSQFSSNLAHDMRTPLTNLLAEAQVALSKPRTADEYRDVIESSIDEYQRLSRMIEDMLFLARSDNAQSHLAIRTLDAAAQAERVAGYYEPMAEDAEVSIVVRGKAEVRADALLYHRALSNLISNALNHAPRGSTITIECAQAADAATISVSDTGRGIEAPHRERIFERFYRVDPARHNSASGTGLGLAIVRSIMENHGGTCGVDSEPHVRTTFWLKFPAHAA

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP016639_1	1.1\|876420\|24\|NZ_CP016639\|CRISPRCasFinder	876420-876443	24	NZ_CP044333	Methylocystis parvus strain BRCS2 plasmid unnamed2, complete sequence	45028-45051	2	0.917
NZ_CP016639_1	1.1\|876420\|24\|NZ_CP016639\|CRISPRCasFinder	876420-876443	24	NZ_CP027859	Streptomyces clavuligerus strain ATCC 27064 plasmid pCLA1, complete sequence	1469126-1469149	3	0.875
NZ_CP016639_1	1.1\|876420\|24\|NZ_CP016639\|CRISPRCasFinder	876420-876443	24	NC_013859	Azospirillum sp. B510 plasmid pAB510e, complete sequence	413893-413916	3	0.875
NZ_CP016639_1	1.1\|876420\|24\|NZ_CP016639\|CRISPRCasFinder	876420-876443	24	NZ_CP054620	Azospirillum oryzae strain KACC 14407 plasmid unnamed5, complete sequence	177400-177423	3	0.875

1. spacer 1.1|876420|24|NZ_CP016639|CRISPRCasFinder matches to NZ_CP044333 (Methylocystis parvus strain BRCS2 plasmid unnamed2, complete sequence) position: , mismatch: 2, identity: 0.917

gacagggcgcaccccggcgatcga	CRISPR spacer
gacagggcgcaccccagcgagcga	Protospacer
***************.**** ***

2. spacer 1.1|876420|24|NZ_CP016639|CRISPRCasFinder matches to NZ_CP027859 (Streptomyces clavuligerus strain ATCC 27064 plasmid pCLA1, complete sequence) position: , mismatch: 3, identity: 0.875

gacagggcgcaccccggcgatcga	CRISPR spacer
gacatggcgcaccccggcgaacgc	Protospacer
**** *************** **

3. spacer 1.1|876420|24|NZ_CP016639|CRISPRCasFinder matches to NC_013859 (Azospirillum sp. B510 plasmid pAB510e, complete sequence) position: , mismatch: 3, identity: 0.875

gacagggcgcaccccggcgatcga	CRISPR spacer
gacatggcgcaccccggcgatggt	Protospacer
**** **************** *

4. spacer 1.1|876420|24|NZ_CP016639|CRISPRCasFinder matches to NZ_CP054620 (Azospirillum oryzae strain KACC 14407 plasmid unnamed5, complete sequence) position: , mismatch: 3, identity: 0.875

gacagggcgcaccccggcgatcga	CRISPR spacer
gacatggcgcaccccggcgatggt	Protospacer
**** **************** *

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

196809 : 203105

Burkholderia_virus(57.14%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004525420.1\|196809_197094_-	BrnA antitoxin family protein	K4NZP3	Burkholderia_phage	1.4e-10	50.0
WP_038734759.1\|197077_197299_-	BrnT family toxin	NA	NA	NA	NA
WP_004537565.1\|197917_198193_+	bacteriophage protein Gp49	Q6JIH4	Burkholderia_virus	5.2e-42	95.6
WP_009923452.1\|198202_198334_+	bacteriophage protein Gp48	Q8W6Q2	Burkholderia_virus	2.6e-15	97.7
WP_004557715.1\|198335_198443_+	hypothetical protein	Q6JIH6	Burkholderia_virus	8.2e-12	97.1
WP_004552390.1\|198469_198691_+	hypothetical protein	NA	NA	NA	NA
WP_038720006.1\|198675_198942_-	hypothetical protein	Q8W6Q4	Burkholderia_virus	5.6e-41	96.4
WP_004542548.1\|199187_199769_-	hypothetical protein	A9YX38	Burkholderia_phage	2.2e-21	100.0
WP_017882403.1\|202697_203105_-	DNA mismatch endonuclease Vsr	E5E3X5	Burkholderia_phage	9.1e-35	53.3

DBSCAN-SWA_2

616287 : 679767

Xanthomonas_phage(14.29%)

transposase,plate

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004523686.1\|616287_616806_+\|plate	type VI secretion system baseplate subunit TssE	NA	NA	NA	NA
WP_004523687.1\|616807_618688_+\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
WP_004523688.1\|618684_619734_+\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA
WP_004544858.1\|619752_620823_+	type VI secretion protein ImpA	NA	NA	NA	NA
WP_004536657.1\|620877_621906_+	fimbrial protein	NA	NA	NA	NA
WP_004553079.1\|621938_623297_+	hypothetical protein	A0A292GJ55	Xanthomonas_phage	1.5e-110	45.5
WP_004545102.1\|623189_626642_-	RHS repeat protein	NA	NA	NA	NA
WP_004523693.1\|626654_626924_-	PAAR motif protein	NA	NA	NA	NA
WP_004553076.1\|629773_630343_-	hypothetical protein	NA	NA	NA	NA
WP_065793669.1\|630532_634432_-	type VI secretion system membrane subunit TssM	NA	NA	NA	NA
WP_004531577.1\|634446_635748_-	type VI secretion system protein TssL	NA	NA	NA	NA
WP_004523698.1\|635744_637094_-\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA
WP_004529643.1\|637099_637642_-	type VI secretion system lipoprotein TssJ	NA	NA	NA	NA
WP_004551170.1\|637769_638252_-	type VI secretion system tube protein Hcp	NA	NA	NA	NA
WP_004523699.1\|638451_639951_-	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA
WP_004523700.1\|639984_640524_-	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA
WP_065793670.1\|640913_642590_-	OmpA family protein	NA	NA	NA	NA
WP_076847500.1\|642592_643249_-	DotU family type IV/VI secretion system protein	NA	NA	NA	NA
WP_004529637.1\|643313_643886_-	type 1 fimbrial protein	NA	NA	NA	NA
WP_011205336.1\|643878_646512_-	fimbrial biogenesis outer membrane usher protein	NA	NA	NA	NA
WP_004533804.1\|646735_647473_-	fimbria/pilus periplasmic chaperone	NA	NA	NA	NA
WP_004523706.1\|647537_648083_-	type 1 fimbrial protein	NA	NA	NA	NA
WP_076852089.1\|648668_649223_+	hypothetical protein	NA	NA	NA	NA
WP_004523708.1\|649233_649449_-	hypothetical protein	NA	NA	NA	NA
WP_076852902.1\|649484_650972_+	PhoPQ-regulated protein	NA	NA	NA	NA
WP_065793671.1\|651038_653312_-	hypothetical protein	A0A2C9CZG8	Yersinia_phage	5.3e-07	46.1
WP_155122754.1\|654160_654520_+	hypothetical protein	NA	NA	NA	NA
WP_017881217.1\|654864_656322_+	hypothetical protein	NA	NA	NA	NA
WP_004533827.1\|657014_657218_+	hypothetical protein	NA	NA	NA	NA
WP_017881216.1\|657472_659068_+	cytochrome c oxidase subunit I	R9VX24	Flavobacterium_phage	4.1e-06	33.3
WP_076852438.1\|659178_659802_+	DUF2244 domain-containing protein	NA	NA	NA	NA
WP_085955809.1\|659948_661084_-\|transposase	IS3 family transposase	Q716C2	Shigella_phage	6.5e-22	31.4
WP_004531587.1\|661674_662367_-	hypothetical protein	NA	NA	NA	NA
WP_004523720.1\|662838_663165_+	thioredoxin family protein	NA	NA	NA	NA
WP_004523721.1\|663184_663604_+	YjbQ family protein	NA	NA	NA	NA
WP_004547827.1\|664018_664282_-	PAAR domain-containing protein	NA	NA	NA	NA
WP_094188797.1\|664291_665830_-	DUF2875 domain-containing protein	NA	NA	NA	NA
WP_065793672.1\|665968_668209_-	DUF3274 domain-containing protein	A0A077K801	Ralstonia_phage	2.6e-22	27.4
WP_080109901.1\|668222_671000_-	type VI secretion system tip protein VgrG	A0A2H4JCD4	uncultured_Caudovirales_phage	5.2e-89	34.8
WP_004528499.1\|671329_671635_-	H-NS histone family protein	NA	NA	NA	NA
WP_004552621.1\|672222_673254_-	extracellular solute-binding protein	NA	NA	NA	NA
WP_004533801.1\|673250_674105_-	ABC transporter permease	NA	NA	NA	NA
WP_004533742.1\|674088_675009_-	ABC transporter permease	NA	NA	NA	NA
WP_004533753.1\|675492_675945_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_009939053.1\|675964_676984_+	AraC family transcriptional regulator	NA	NA	NA	NA
WP_080002191.1\|676980_677235_-	SET domain-containing protein-lysine N-methyltransferase	NA	NA	NA	NA
WP_023358215.1\|678597_679767_-\|transposase	IS30 family transposase	Q9MBM9	Staphylococcus_prophage	1.9e-32	30.1

DBSCAN-SWA_3

1089578 : 1119960

Acanthocystis_turfacea_Chlorella_virus(25.0%)

transposase,plate

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004190585.1\|1089578_1090982_+\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA
WP_004529328.1\|1090997_1092314_+	DotU family type VI secretion system protein	NA	NA	NA	NA
WP_043292061.1\|1092316_1095946_+	type VI secretion system membrane subunit TssM	NA	NA	NA	NA
WP_080110306.1\|1095951_1096866_+	type VI secretion system-associated protein TagF	NA	NA	NA	NA
WP_004529325.1\|1096850_1097078_-	hypothetical protein	NA	NA	NA	NA
WP_065793687.1\|1097076_1099692_+	serine/threonine protein kinase	M1I231	Acanthocystis_turfacea_Chlorella_virus	5.0e-09	26.6
WP_004190988.1\|1099744_1100824_+	type VI secretion system protein TssA	NA	NA	NA	NA
WP_004524810.1\|1100886_1101465_+	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA
WP_017881434.1\|1101457_1102966_+	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA
WP_004190698.1\|1103025_1103517_+	type VI secretion system tube protein Hcp	NA	NA	NA	NA
WP_009935240.1\|1103535_1104084_+\|plate	type VI secretion system baseplate subunit TssE	NA	NA	NA	NA
WP_004553897.1\|1104088_1105960_+\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
WP_129112010.1\|1105956_1107390_+\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA
WP_017881436.1\|1110064_1112269_+	type VI secretion system tip protein VgrG	A0A077K8Q4	Ralstonia_phage	9.6e-46	29.9
WP_017881437.1\|1112284_1112995_+	hypothetical protein	NA	NA	NA	NA
WP_085508576.1\|1114419_1114938_+\|transposase	transposase	S5WIU1	Leptospira_phage	4.3e-21	53.1
WP_080002868.1\|1115903_1116233_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_004549102.1\|1116243_1117395_-	hypothetical protein	NA	NA	NA	NA
WP_085955821.1\|1118961_1119960_-\|transposase	IS481 family transposase	E9P643	Wolbachia_endosymbiont_wVitB_of_Nasonia_vitripennis_phage	2.8e-125	64.8

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP016638

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP016639

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection