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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP014673 Thermoclostridium stercorarium subsp. leptospartum DSM 9219 chromosome, complete genome 8 crisprs cas10,csm3gr7,csx10gr5,csm2gr11,csx1,csa3,cas3,DinG,cas2,cas1,cas4,cas5,cas7,cas8b2,cas6,PD-DExK 1 16 10 0

Results visualization

1. NZ_CP014673
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP014673_1 206144-207224 Orphan NA
16 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP014673_2 368006-368183 Orphan NA
2 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP014673_3 791511-792648 Orphan NA
17 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP014673_4 792792-792951 Orphan NA
2 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP014673_5 1524786-1524947 Orphan I-A
2 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP014673_6 1828244-1829716 Unclear NA
22 spacers
cas2,cas1,cas4,cas3,cas5,cas7,cas8b2,cas6

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP014673_7 1831156-1840030 Unclear NA
135 spacers
cas2,cas1,cas4,cas3,cas5,cas7,cas8b2,cas6

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP014673_8 2149249-2149575 Unclear NA
4 spacers
cas5,cas7,cas8b2,cas6,cas3

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
NZ_CP014673_6 6.8|1828730|36|NZ_CP014673|CRT,PILER-CR,CRISPRCasFinder 1828730-1828765 36 NZ_CP014673.1 1844816-1844851 0 1.0

1. spacer 6.8|1828730|36|NZ_CP014673|CRT,PILER-CR,CRISPRCasFinder matches to position: 1844816-1844851, mismatch: 0, identity: 1.0

tcatattatccgtcgcttggacgctgggaggatcta	CRISPR spacer
tcatattatccgtcgcttggacgctgggaggatcta	Protospacer
************************************

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP014673_7 7.53|1834592|33|NZ_CP014673|PILER-CR,CRISPRCasFinder,CRT 1834592-1834624 33 NC_012811 Methylorubrum extorquens AM1 megaplasmid, complete sequence 344430-344462 6 0.818
NZ_CP014673_7 7.37|1833545|34|NZ_CP014673|PILER-CR,CRISPRCasFinder,CRT 1833545-1833578 34 NZ_CP010111 Bacillus thuringiensis serovar indiana strain HD521 plasmid pBTHD521-5, complete sequence 169165-169198 7 0.794
NZ_CP014673_7 7.49|1834330|35|NZ_CP014673|PILER-CR,CRISPRCasFinder,CRT 1834330-1834364 35 MH001446 Mycobacterium phage Megabear, complete genome 45628-45662 7 0.8
NZ_CP014673_7 7.49|1834330|35|NZ_CP014673|PILER-CR,CRISPRCasFinder,CRT 1834330-1834364 35 AP018462 Mycobacterium phage D12 DNA, complete genome 46255-46289 7 0.8
NZ_CP014673_7 7.49|1834330|35|NZ_CP014673|PILER-CR,CRISPRCasFinder,CRT 1834330-1834364 35 MK494131 Mycobacterium phage GodPhather, complete genome 46495-46529 7 0.8
NZ_CP014673_7 7.49|1834330|35|NZ_CP014673|PILER-CR,CRISPRCasFinder,CRT 1834330-1834364 35 MK494114 Mycobacterium phage Argie, complete genome 45992-46026 7 0.8
NZ_CP014673_7 7.49|1834330|35|NZ_CP014673|PILER-CR,CRISPRCasFinder,CRT 1834330-1834364 35 MK494132 Mycobacterium phage Cepens, complete genome 45707-45741 7 0.8
NZ_CP014673_7 7.49|1834330|35|NZ_CP014673|PILER-CR,CRISPRCasFinder,CRT 1834330-1834364 35 AP018463 Mycobacterium phage PR DNA, complete genome 46232-46266 7 0.8
NZ_CP014673_7 7.49|1834330|35|NZ_CP014673|PILER-CR,CRISPRCasFinder,CRT 1834330-1834364 35 MH001450 Mycobacterium phage Jeon, complete genome 46237-46271 7 0.8
NZ_CP014673_8 8.2|2149345|35|NZ_CP014673|CRISPRCasFinder,CRT 2149345-2149379 35 MN692987 Marine virus AFVG_117M51, complete genome 39368-39402 8 0.771
NZ_CP014673_3 3.8|791996|35|NZ_CP014673|PILER-CR,CRISPRCasFinder,CRT 791996-792030 35 MN694321 Marine virus AFVG_250M307, complete genome 34150-34184 9 0.743
NZ_CP014673_7 7.12|1831904|35|NZ_CP014673|PILER-CR,CRISPRCasFinder,CRT 1831904-1831938 35 NZ_CP024166 Salmonella enterica subsp. enterica serovar Gaminara strain CFSAN070644 plasmid pCFSAN024441_01, complete sequence 1576-1610 9 0.743
NZ_CP014673_7 7.33|1833284|34|NZ_CP014673|PILER-CR,CRISPRCasFinder,CRT 1833284-1833317 34 MK813941 Aeromonas phage 4_L372XY, complete genome 123798-123831 9 0.735
NZ_CP014673_7 7.37|1833545|34|NZ_CP014673|PILER-CR,CRISPRCasFinder,CRT 1833545-1833578 34 NC_018510 Bacillus thuringiensis HD-789 plasmid pBTHD789-3, complete sequence 140335-140368 9 0.735
NZ_CP014673_7 7.37|1833545|34|NZ_CP014673|PILER-CR,CRISPRCasFinder,CRT 1833545-1833578 34 NZ_CP024772 Bacillus thuringiensis LM1212 plasmid pLM1, complete sequence 187950-187983 9 0.735
NZ_CP014673_7 7.37|1833545|34|NZ_CP014673|PILER-CR,CRISPRCasFinder,CRT 1833545-1833578 34 NZ_CP013280 Bacillus thuringiensis serovar israelensis strain AM65-52 plasmid pAM65-52-5-100K, complete sequence 19183-19216 9 0.735
NZ_CP014673_7 7.37|1833545|34|NZ_CP014673|PILER-CR,CRISPRCasFinder,CRT 1833545-1833578 34 NZ_CP039726 Bacillus thuringiensis strain BT-59 plasmid p5, complete sequence 28233-28266 9 0.735
NZ_CP014673_7 7.37|1833545|34|NZ_CP014673|PILER-CR,CRISPRCasFinder,CRT 1833545-1833578 34 NZ_CP009350 Bacillus thuringiensis HD1002 plasmid 4, complete sequence 48013-48046 9 0.735
NZ_CP014673_7 7.37|1833545|34|NZ_CP014673|PILER-CR,CRISPRCasFinder,CRT 1833545-1833578 34 CP016195 Bacillus thuringiensis serovar coreanensis strain ST7 plasmid pST7-1, complete sequence 32407-32440 9 0.735
NZ_CP014673_7 7.37|1833545|34|NZ_CP014673|PILER-CR,CRISPRCasFinder,CRT 1833545-1833578 34 CP016195 Bacillus thuringiensis serovar coreanensis strain ST7 plasmid pST7-1, complete sequence 243472-243505 9 0.735
NZ_CP014673_7 7.37|1833545|34|NZ_CP014673|PILER-CR,CRISPRCasFinder,CRT 1833545-1833578 34 NZ_CP041074 Bacillus tropicus strain LM1212-W3 plasmid p1, complete sequence 165233-165266 9 0.735
NZ_CP014673_7 7.43|1833937|36|NZ_CP014673|PILER-CR,CRISPRCasFinder,CRT 1833937-1833972 36 NC_013940 Deferribacter desulfuricans SSM1 megaplasmid pDF308, complete sequence 215575-215610 9 0.75
NZ_CP014673_7 7.53|1834592|33|NZ_CP014673|PILER-CR,CRISPRCasFinder,CRT 1834592-1834624 33 LR134125 Klebsiella aerogenes strain NCTC10006 genome assembly, plasmid: 5 295732-295764 9 0.727
NZ_CP014673_7 7.53|1834592|33|NZ_CP014673|PILER-CR,CRISPRCasFinder,CRT 1834592-1834624 33 NZ_CP030828 Neorhizobium sp. NCHU2750 plasmid pNCHU2750a, complete sequence 551236-551268 9 0.727
NZ_CP014673_7 7.77|1836166|36|NZ_CP014673|PILER-CR,CRISPRCasFinder,CRT 1836166-1836201 36 NZ_CP043834 Bacillus sp. BS98 plasmid unnamed4 14688-14723 9 0.75
NZ_CP014673_7 7.77|1836166|36|NZ_CP014673|PILER-CR,CRISPRCasFinder,CRT 1836166-1836201 36 NZ_CP020436 Bacillus sp. FDAARGOS_235 plasmid 2, complete sequence 28260-28295 9 0.75
NZ_CP014673_7 7.119|1838915|35|NZ_CP014673|PILER-CR,CRISPRCasFinder,CRT 1838915-1838949 35 NZ_LR215032 Mycoplasma gallopavonis strain NCTC10186 plasmid 2 171906-171940 9 0.743
NZ_CP014673_7 7.119|1838915|35|NZ_CP014673|PILER-CR,CRISPRCasFinder,CRT 1838915-1838949 35 NZ_CP027186 Acinetobacter baumannii strain AR_0052 plasmid unnamed4 30072-30106 9 0.743
NZ_CP014673_7 7.119|1838915|35|NZ_CP014673|PILER-CR,CRISPRCasFinder,CRT 1838915-1838949 35 CP035673 Acinetobacter baumannii strain VB23193 plasmid unnamed1, complete sequence 2081-2115 9 0.743
NZ_CP014673_7 7.119|1838915|35|NZ_CP014673|PILER-CR,CRISPRCasFinder,CRT 1838915-1838949 35 CP035673 Acinetobacter baumannii strain VB23193 plasmid unnamed1, complete sequence 13245-13279 9 0.743
NZ_CP014673_7 7.119|1838915|35|NZ_CP014673|PILER-CR,CRISPRCasFinder,CRT 1838915-1838949 35 CP035674 Acinetobacter baumannii strain VB23193 plasmid unnamed2, complete sequence 7539-7573 9 0.743
NZ_CP014673_3 3.5|791802|35|NZ_CP014673|PILER-CR,CRISPRCasFinder,CRT 791802-791836 35 NZ_CP031005 Lactobacillus curvatus strain TMW 1.1928 plasmid p-1.1928_2, complete sequence 11565-11599 10 0.714
NZ_CP014673_7 7.17|1832231|35|NZ_CP014673|PILER-CR,CRISPRCasFinder,CRT 1832231-1832265 35 NZ_LR134399 Listeria monocytogenes strain NCTC7974 plasmid 2, complete sequence 75428-75462 10 0.714
NZ_CP014673_7 7.115|1838657|34|NZ_CP014673|PILER-CR,CRISPRCasFinder,CRT 1838657-1838690 34 NZ_CP021367 Acidovorax carolinensis strain P4 plasmid pACP4.1, complete sequence 28333-28366 10 0.706
NZ_CP014673_7 7.115|1838657|34|NZ_CP014673|PILER-CR,CRISPRCasFinder,CRT 1838657-1838690 34 NZ_CP021363 Acidovorax carolinensis strain P3 plasmid pACP3.1, complete sequence 14384-14417 10 0.706
NZ_CP014673_7 7.115|1838657|34|NZ_CP014673|PILER-CR,CRISPRCasFinder,CRT 1838657-1838690 34 NZ_CP021360 Acidovorax carolinensis strain NA2 plasmid pACNA2.1, complete sequence 49761-49794 10 0.706
NZ_CP014673_7 7.115|1838657|34|NZ_CP014673|PILER-CR,CRISPRCasFinder,CRT 1838657-1838690 34 NZ_CP023408 Streptomyces fungicidicus strain TXX3120 plasmid p1, complete sequence 719930-719963 10 0.706
NZ_CP014673_7 7.115|1838657|34|NZ_CP014673|PILER-CR,CRISPRCasFinder,CRT 1838657-1838690 34 MT889376 Arthrobacter phage Phives, complete genome 5677-5710 10 0.706
NZ_CP014673_7 7.115|1838657|34|NZ_CP014673|PILER-CR,CRISPRCasFinder,CRT 1838657-1838690 34 MT889376 Arthrobacter phage Phives, complete genome 39486-39519 10 0.706
NZ_CP014673_3 3.17|792583|35|NZ_CP014673|CRISPRCasFinder,CRT 792583-792617 35 NZ_CP035514 Haematobacter massiliensis strain OT1 plasmid pOT1-4, complete sequence 51311-51345 11 0.686
NZ_CP014673_6 6.7|1828665|35|NZ_CP014673|CRT,PILER-CR,CRISPRCasFinder 1828665-1828699 35 NZ_LR214986 Mycoplasma cynos strain NCTC10142 plasmid 13 347305-347339 11 0.686
NZ_CP014673_7 7.33|1833284|34|NZ_CP014673|PILER-CR,CRISPRCasFinder,CRT 1833284-1833317 34 NZ_KJ776578 Clostridium botulinum strain CDC3875 plasmid pCDC3875, complete sequence 13202-13235 11 0.676
NZ_CP014673_7 7.33|1833284|34|NZ_CP014673|PILER-CR,CRISPRCasFinder,CRT 1833284-1833317 34 NZ_KJ776581 Clostridium botulinum strain IFR_05/025 plasmid p05/025, complete sequence 13202-13235 11 0.676
NZ_CP014673_7 7.33|1833284|34|NZ_CP014673|PILER-CR,CRISPRCasFinder,CRT 1833284-1833317 34 NZ_KJ776580 Clostridium botulinum strain CDC5900 plasmid pCDC5900, complete sequence 18013-18046 11 0.676
NZ_CP014673_7 7.111|1838398|34|NZ_CP014673|PILER-CR,CRISPRCasFinder,CRT 1838398-1838431 34 NC_001277 Pediococcus pentosaceus ATCC43200 plasmid pMD136, complete sequence 19394-19427 11 0.676
NZ_CP014673_7 7.111|1838398|34|NZ_CP014673|PILER-CR,CRISPRCasFinder,CRT 1838398-1838431 34 NC_002126 Pediococcus pentosaceus plasmid pMD136, complete sequence 15495-15528 11 0.676
NZ_CP014673_8 8.2|2149345|35|NZ_CP014673|CRISPRCasFinder,CRT 2149345-2149379 35 AP014362 Uncultured Mediterranean phage uvMED isolate uvMED-GF-U-MedDCM-OCT-S41-C102, *** SEQUENCING IN PROGRESS *** 15166-15200 11 0.686
NZ_CP014673_7 7.119|1838915|35|NZ_CP014673|PILER-CR,CRISPRCasFinder,CRT 1838915-1838949 35 NZ_CP020859 Lactobacillus salivarius strain ZLS006 plasmid unnamed1, complete sequence 146706-146740 12 0.657

1. spacer 7.53|1834592|33|NZ_CP014673|PILER-CR,CRISPRCasFinder,CRT matches to NC_012811 (Methylorubrum extorquens AM1 megaplasmid, complete sequence) position: , mismatch: 6, identity: 0.818

--gccctggccgccgccgacagaagcagagcggct	CRISPR spacer
cgggcctg--cgccgtcgaccgaagcagagcggcc	Protospacer
  * ****  *****.**** *************.

2. spacer 7.37|1833545|34|NZ_CP014673|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP010111 (Bacillus thuringiensis serovar indiana strain HD521 plasmid pBTHD521-5, complete sequence) position: , mismatch: 7, identity: 0.794

ccaccatta-atttcaaaaggtcaatatattcttc	CRISPR spacer
-aaagatgagattgcaaaaggtcaatatcttcttc	Protospacer
  *  ** * *** ************** ******

3. spacer 7.49|1834330|35|NZ_CP014673|PILER-CR,CRISPRCasFinder,CRT matches to MH001446 (Mycobacterium phage Megabear, complete genome) position: , mismatch: 7, identity: 0.8

atagggttttgaaagggtttcggaagggtttgaaa	CRISPR spacer
ggagggttcggaaagggtttcggaagggtttcgga	Protospacer
. ******. ********************* ..*

4. spacer 7.49|1834330|35|NZ_CP014673|PILER-CR,CRISPRCasFinder,CRT matches to AP018462 (Mycobacterium phage D12 DNA, complete genome) position: , mismatch: 7, identity: 0.8

atagggttttgaaagggtttcggaagggtttgaaa	CRISPR spacer
ggagggttcggaaagggtttcggaagggtttcgga	Protospacer
. ******. ********************* ..*

5. spacer 7.49|1834330|35|NZ_CP014673|PILER-CR,CRISPRCasFinder,CRT matches to MK494131 (Mycobacterium phage GodPhather, complete genome) position: , mismatch: 7, identity: 0.8

atagggttttgaaagggtttcggaagggtttgaaa	CRISPR spacer
ggagggttcggaaagggtttcggaagggtttcgga	Protospacer
. ******. ********************* ..*

6. spacer 7.49|1834330|35|NZ_CP014673|PILER-CR,CRISPRCasFinder,CRT matches to MK494114 (Mycobacterium phage Argie, complete genome) position: , mismatch: 7, identity: 0.8

atagggttttgaaagggtttcggaagggtttgaaa	CRISPR spacer
ggagggttcggaaagggtttcggaagggtttcgga	Protospacer
. ******. ********************* ..*

7. spacer 7.49|1834330|35|NZ_CP014673|PILER-CR,CRISPRCasFinder,CRT matches to MK494132 (Mycobacterium phage Cepens, complete genome) position: , mismatch: 7, identity: 0.8

atagggttttgaaagggtttcggaagggtttgaaa	CRISPR spacer
ggagggttcggaaagggtttcggaagggtttcgga	Protospacer
. ******. ********************* ..*

8. spacer 7.49|1834330|35|NZ_CP014673|PILER-CR,CRISPRCasFinder,CRT matches to AP018463 (Mycobacterium phage PR DNA, complete genome) position: , mismatch: 7, identity: 0.8

atagggttttgaaagggtttcggaagggtttgaaa	CRISPR spacer
ggagggttcggaaagggtttcggaagggtttcgga	Protospacer
. ******. ********************* ..*

9. spacer 7.49|1834330|35|NZ_CP014673|PILER-CR,CRISPRCasFinder,CRT matches to MH001450 (Mycobacterium phage Jeon, complete genome) position: , mismatch: 7, identity: 0.8

atagggttttgaaagggtttcggaagggtttgaaa	CRISPR spacer
ggagggttcggaaagggtttcggaagggtttcgga	Protospacer
. ******. ********************* ..*

10. spacer 8.2|2149345|35|NZ_CP014673|CRISPRCasFinder,CRT matches to MN692987 (Marine virus AFVG_117M51, complete genome) position: , mismatch: 8, identity: 0.771

tctacgacaatagcatcaggtctaaatggttgacc	CRISPR spacer
ccatcaacaataccatcaggtctaaacggtttagc	Protospacer
.*  *.****** *************.**** * *

11. spacer 3.8|791996|35|NZ_CP014673|PILER-CR,CRISPRCasFinder,CRT matches to MN694321 (Marine virus AFVG_250M307, complete genome) position: , mismatch: 9, identity: 0.743

acaggagtctagtttttctccgtctttttctaaaa	CRISPR spacer
cccatcttctagtttttctacgtctttttctaacg	Protospacer
 * .   ************ ************* .

12. spacer 7.12|1831904|35|NZ_CP014673|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP024166 (Salmonella enterica subsp. enterica serovar Gaminara strain CFSAN070644 plasmid pCFSAN024441_01, complete sequence) position: , mismatch: 9, identity: 0.743

ataaaaatgattatttcaaaatttccgttaactta	CRISPR spacer
aaaagaatgattatttcataatttccgaaaaaaat	Protospacer
* **.************* ********  **    

13. spacer 7.33|1833284|34|NZ_CP014673|PILER-CR,CRISPRCasFinder,CRT matches to MK813941 (Aeromonas phage 4_L372XY, complete genome) position: , mismatch: 9, identity: 0.735

ttagtctag--tatttcttatttctctatatttaat	CRISPR spacer
--aatacaatctatttattatttatctatatttaac	Protospacer
  *.* .*.  ***** ****** ***********.

14. spacer 7.37|1833545|34|NZ_CP014673|PILER-CR,CRISPRCasFinder,CRT matches to NC_018510 (Bacillus thuringiensis HD-789 plasmid pBTHD789-3, complete sequence) position: , mismatch: 9, identity: 0.735

ccaccattaatttcaaaaggtcaatatattcttc	CRISPR spacer
aaagatgaaattgcaaaaggtcaatatcttcttc	Protospacer
  *     **** ************** ******

15. spacer 7.37|1833545|34|NZ_CP014673|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP024772 (Bacillus thuringiensis LM1212 plasmid pLM1, complete sequence) position: , mismatch: 9, identity: 0.735

ccaccattaatttcaaaaggtcaatatattcttc	CRISPR spacer
aaagatgaaattgcaaaaggtcaatatcttcttc	Protospacer
  *     **** ************** ******

16. spacer 7.37|1833545|34|NZ_CP014673|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013280 (Bacillus thuringiensis serovar israelensis strain AM65-52 plasmid pAM65-52-5-100K, complete sequence) position: , mismatch: 9, identity: 0.735

ccaccattaatttcaaaaggtcaatatattcttc	CRISPR spacer
aaagatgaaattgcaaaaggtcaatatcttcttc	Protospacer
  *     **** ************** ******

17. spacer 7.37|1833545|34|NZ_CP014673|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP039726 (Bacillus thuringiensis strain BT-59 plasmid p5, complete sequence) position: , mismatch: 9, identity: 0.735

ccaccattaatttcaaaaggtcaatatattcttc	CRISPR spacer
aaagatgaaattgcaaaaggtcaatatcttcttc	Protospacer
  *     **** ************** ******

18. spacer 7.37|1833545|34|NZ_CP014673|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP009350 (Bacillus thuringiensis HD1002 plasmid 4, complete sequence) position: , mismatch: 9, identity: 0.735

ccaccattaatttcaaaaggtcaatatattcttc	CRISPR spacer
aaagatgaaattgcaaaaggtcaatatcttcttc	Protospacer
  *     **** ************** ******

19. spacer 7.37|1833545|34|NZ_CP014673|PILER-CR,CRISPRCasFinder,CRT matches to CP016195 (Bacillus thuringiensis serovar coreanensis strain ST7 plasmid pST7-1, complete sequence) position: , mismatch: 9, identity: 0.735

ccaccattaatttcaaaaggtcaatatattcttc	CRISPR spacer
aaagatgaaattgcaaaaggtcaatatcttcttc	Protospacer
  *     **** ************** ******

20. spacer 7.37|1833545|34|NZ_CP014673|PILER-CR,CRISPRCasFinder,CRT matches to CP016195 (Bacillus thuringiensis serovar coreanensis strain ST7 plasmid pST7-1, complete sequence) position: , mismatch: 9, identity: 0.735

ccaccattaatttcaaaaggtcaatatattcttc	CRISPR spacer
aaagatgaaattgcaaaaggtcaatatcttcttc	Protospacer
  *     **** ************** ******

21. spacer 7.37|1833545|34|NZ_CP014673|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP041074 (Bacillus tropicus strain LM1212-W3 plasmid p1, complete sequence) position: , mismatch: 9, identity: 0.735

ccaccattaatttcaaaaggtcaatatattcttc	CRISPR spacer
aaagatgaaattgcaaaaggtcaatatcttcttc	Protospacer
  *     **** ************** ******

22. spacer 7.43|1833937|36|NZ_CP014673|PILER-CR,CRISPRCasFinder,CRT matches to NC_013940 (Deferribacter desulfuricans SSM1 megaplasmid pDF308, complete sequence) position: , mismatch: 9, identity: 0.75

tatataatatcaattatgtaatgaatactatcaagc	CRISPR spacer
tatatcatatcaattatataatgaataaatataaat	Protospacer
***** ***********.*********    .**..

23. spacer 7.53|1834592|33|NZ_CP014673|PILER-CR,CRISPRCasFinder,CRT matches to LR134125 (Klebsiella aerogenes strain NCTC10006 genome assembly, plasmid: 5) position: , mismatch: 9, identity: 0.727

gccctggccgccgccgacagaagcagagcggct	CRISPR spacer
accgtggccgccgccgacaggagcaggccaaac	Protospacer
.** ****************.*****. *.. .

24. spacer 7.53|1834592|33|NZ_CP014673|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP030828 (Neorhizobium sp. NCHU2750 plasmid pNCHU2750a, complete sequence) position: , mismatch: 9, identity: 0.727

gccctggccgccgccgacagaagcagagcggct	CRISPR spacer
ccgctggccgccgccgactggagcagacgatcg	Protospacer
 * *************** *.******  . * 

25. spacer 7.77|1836166|36|NZ_CP014673|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP043834 (Bacillus sp. BS98 plasmid unnamed4) position: , mismatch: 9, identity: 0.75

gtagaatcgataaaataaatgctactaaatttaaag	CRISPR spacer
ttcgaatcaataaaataaatgatactaaagatagcc	Protospacer
 * *****.************ *******  **.  

26. spacer 7.77|1836166|36|NZ_CP014673|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP020436 (Bacillus sp. FDAARGOS_235 plasmid 2, complete sequence) position: , mismatch: 9, identity: 0.75

gtagaatcgataaaataaatgctactaaatttaaag	CRISPR spacer
ttcgaatcaataaaataaatgatactaaagatagcc	Protospacer
 * *****.************ *******  **.  

27. spacer 7.119|1838915|35|NZ_CP014673|PILER-CR,CRISPRCasFinder,CRT matches to NZ_LR215032 (Mycoplasma gallopavonis strain NCTC10186 plasmid 2) position: , mismatch: 9, identity: 0.743

gttttgctaatttcagtcaaatcatcatattcaaa	CRISPR spacer
tttttgctaatttcaggaaaatcatctaagtttca	Protospacer
 ***************  ********  * *.  *

28. spacer 7.119|1838915|35|NZ_CP014673|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP027186 (Acinetobacter baumannii strain AR_0052 plasmid unnamed4) position: , mismatch: 9, identity: 0.743

gttttgctaatttcagtcaaatcatcat--attcaaa	CRISPR spacer
gttttgataatttcattcaaatcatttttagtttg--	Protospacer
****** ******** *********. *  .**..  

29. spacer 7.119|1838915|35|NZ_CP014673|PILER-CR,CRISPRCasFinder,CRT matches to CP035673 (Acinetobacter baumannii strain VB23193 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.743

gttttgctaatttcagtcaaatcatcat--attcaaa	CRISPR spacer
gttttgataatttcattcaaatcatttttagtttg--	Protospacer
****** ******** *********. *  .**..  

30. spacer 7.119|1838915|35|NZ_CP014673|PILER-CR,CRISPRCasFinder,CRT matches to CP035673 (Acinetobacter baumannii strain VB23193 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.743

gttttgctaatttcagtcaaatcatcat--attcaaa	CRISPR spacer
gttttgataatttcattcaaatcatttttagtttg--	Protospacer
****** ******** *********. *  .**..  

31. spacer 7.119|1838915|35|NZ_CP014673|PILER-CR,CRISPRCasFinder,CRT matches to CP035674 (Acinetobacter baumannii strain VB23193 plasmid unnamed2, complete sequence) position: , mismatch: 9, identity: 0.743

gttttgctaatttcagtcaaatcatcat--attcaaa	CRISPR spacer
gttttgataatttcattcaaatcatttttagtttg--	Protospacer
****** ******** *********. *  .**..  

32. spacer 3.5|791802|35|NZ_CP014673|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP031005 (Lactobacillus curvatus strain TMW 1.1928 plasmid p-1.1928_2, complete sequence) position: , mismatch: 10, identity: 0.714

tctgacttcaaagttttgatttgaaagtctttacg	CRISPR spacer
gcagtgacaaaagttatgattcgaaagtctttacc	Protospacer
 * *   . ****** *****.************ 

33. spacer 7.17|1832231|35|NZ_CP014673|PILER-CR,CRISPRCasFinder,CRT matches to NZ_LR134399 (Listeria monocytogenes strain NCTC7974 plasmid 2, complete sequence) position: , mismatch: 10, identity: 0.714

gataaagtcatttatttctttgagaagagcattat	CRISPR spacer
cgtaaagtcattgatttatttgagaagtacggcaa	Protospacer
 .********** **** ********* .*. .* 

34. spacer 7.115|1838657|34|NZ_CP014673|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021367 (Acidovorax carolinensis strain P4 plasmid pACP4.1, complete sequence) position: , mismatch: 10, identity: 0.706

gccaatgagggcggcggccttcagggcttcctct	CRISPR spacer
gccaatgagggcggcggccatctggtgctgggtg	Protospacer
******************* ** **  .*   . 

35. spacer 7.115|1838657|34|NZ_CP014673|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021363 (Acidovorax carolinensis strain P3 plasmid pACP3.1, complete sequence) position: , mismatch: 10, identity: 0.706

gccaatgagggcggcggccttcagggcttcctct	CRISPR spacer
gccaatgagggcggcggccatctggtgctgggtg	Protospacer
******************* ** **  .*   . 

36. spacer 7.115|1838657|34|NZ_CP014673|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021360 (Acidovorax carolinensis strain NA2 plasmid pACNA2.1, complete sequence) position: , mismatch: 10, identity: 0.706

gccaatgagggcggcggccttcagggcttcctct	CRISPR spacer
gccaatgagggcggcggccatctggtgctgggtg	Protospacer
******************* ** **  .*   . 

37. spacer 7.115|1838657|34|NZ_CP014673|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP023408 (Streptomyces fungicidicus strain TXX3120 plasmid p1, complete sequence) position: , mismatch: 10, identity: 0.706

gccaatgagggcggcggccttcagggcttcctct	CRISPR spacer
ccccatgacggcggcggccttcaggccgcgtccg	Protospacer
 ** **** **************** * . ..* 

38. spacer 7.115|1838657|34|NZ_CP014673|PILER-CR,CRISPRCasFinder,CRT matches to MT889376 (Arthrobacter phage Phives, complete genome) position: , mismatch: 10, identity: 0.706

gccaatgagggcggcggccttcagggcttcctct	CRISPR spacer
ggcggcttcggcggcggccttcttggcttcctcc	Protospacer
* *...   *************  *********.

39. spacer 7.115|1838657|34|NZ_CP014673|PILER-CR,CRISPRCasFinder,CRT matches to MT889376 (Arthrobacter phage Phives, complete genome) position: , mismatch: 10, identity: 0.706

gccaatgagggcggcggccttcagggcttcctct	CRISPR spacer
gcgcgccttggcgggggccttcagggcttcgtcg	Protospacer
**  ..   ***** *************** ** 

40. spacer 3.17|792583|35|NZ_CP014673|CRISPRCasFinder,CRT matches to NZ_CP035514 (Haematobacter massiliensis strain OT1 plasmid pOT1-4, complete sequence) position: , mismatch: 11, identity: 0.686

atgatcgttgtggaaaacgaatacttcgtttccac	CRISPR spacer
gattccgttttggaaaacgaatactacgttaatag	Protospacer
.   .**** *************** ****  .* 

41. spacer 6.7|1828665|35|NZ_CP014673|CRT,PILER-CR,CRISPRCasFinder matches to NZ_LR214986 (Mycoplasma cynos strain NCTC10142 plasmid 13) position: , mismatch: 11, identity: 0.686

cttttttaaagtcaattatttctgctccaggataa	CRISPR spacer
gttttttagactcaattatttctgctttctttttt	Protospacer
 *******.* ***************..    *  

42. spacer 7.33|1833284|34|NZ_CP014673|PILER-CR,CRISPRCasFinder,CRT matches to NZ_KJ776578 (Clostridium botulinum strain CDC3875 plasmid pCDC3875, complete sequence) position: , mismatch: 11, identity: 0.676

ttagtctagtatttcttatttctctatatttaat	CRISPR spacer
aattttctttatttgttttttctctatatttaac	Protospacer
    *..  ***** ** ***************.

43. spacer 7.33|1833284|34|NZ_CP014673|PILER-CR,CRISPRCasFinder,CRT matches to NZ_KJ776581 (Clostridium botulinum strain IFR_05/025 plasmid p05/025, complete sequence) position: , mismatch: 11, identity: 0.676

ttagtctagtatttcttatttctctatatttaat	CRISPR spacer
aattttctttatttgttttttctctatatttaac	Protospacer
    *..  ***** ** ***************.

44. spacer 7.33|1833284|34|NZ_CP014673|PILER-CR,CRISPRCasFinder,CRT matches to NZ_KJ776580 (Clostridium botulinum strain CDC5900 plasmid pCDC5900, complete sequence) position: , mismatch: 11, identity: 0.676

ttagtctagtatttcttatttctctatatttaat	CRISPR spacer
aattttctttatttgttttttctctatatttaac	Protospacer
    *..  ***** ** ***************.

45. spacer 7.111|1838398|34|NZ_CP014673|PILER-CR,CRISPRCasFinder,CRT matches to NC_001277 (Pediococcus pentosaceus ATCC43200 plasmid pMD136, complete sequence) position: , mismatch: 11, identity: 0.676

gatatgaaagcgattcttgaattgccaaagatgc	CRISPR spacer
catttgaaagcgattcttgaatcgctgtattcat	Protospacer
 ** ******************.**.. *  ...

46. spacer 7.111|1838398|34|NZ_CP014673|PILER-CR,CRISPRCasFinder,CRT matches to NC_002126 (Pediococcus pentosaceus plasmid pMD136, complete sequence) position: , mismatch: 11, identity: 0.676

gatatgaaagcgattcttgaattgccaaagatgc	CRISPR spacer
catttgaaagcgattcttgaatcgctgtattcat	Protospacer
 ** ******************.**.. *  ...

47. spacer 8.2|2149345|35|NZ_CP014673|CRISPRCasFinder,CRT matches to AP014362 (Uncultured Mediterranean phage uvMED isolate uvMED-GF-U-MedDCM-OCT-S41-C102, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 11, identity: 0.686

tctacgacaatagcatcaggtctaaatggttgacc	CRISPR spacer
agccagacaatagcatcaggtgaaaatggtagtgt	Protospacer
  .  ****************  ******* *  .

48. spacer 7.119|1838915|35|NZ_CP014673|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP020859 (Lactobacillus salivarius strain ZLS006 plasmid unnamed1, complete sequence) position: , mismatch: 12, identity: 0.657

gttttgctaatttcagtcaaatcatcatattcaaa	CRISPR spacer
cgacgaacaatttcagtcatatcaacatattcatt	Protospacer
   . . .*********** **** ********  

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 141463 : 234717 69 Enterobacteria_phage(18.75%) tRNA,transposase NA
DBSCAN-SWA_2 321574 : 377281 48 unidentified_phage(16.67%) protease,tRNA,transposase NA
DBSCAN-SWA_3 842254 : 893696 38 unidentified_phage(16.67%) tRNA,transposase,protease NA
DBSCAN-SWA_4 971421 : 980423 6 Bacillus_phage(83.33%) NA NA
DBSCAN-SWA_5 1283800 : 1295219 9 Bacillus_phage(42.86%) NA NA
DBSCAN-SWA_6 1299214 : 1360634 52 Bacillus_phage(23.08%) transposase NA
DBSCAN-SWA_7 1563264 : 1617901 54 Bacillus_phage(21.43%) coat,integrase,tRNA,transposase,protease attL 1563233:1563257|attR 1616981:1617005
DBSCAN-SWA_8 1971686 : 2036296 50 Corynebacterium_phage(14.29%) transposase,integrase attL 2006341:2006364|attR 2007239:2007262
DBSCAN-SWA_9 2169436 : 2206077 32 uncultured_virus(33.33%) tRNA,head,transposase,tail,protease NA
DBSCAN-SWA_10 2211214 : 2265515 64 Erysipelothrix_phage(75.68%) holin,terminase,capsid,head,portal,tail,transposase,protease NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage