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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP016594 Gordonia terrae strain 3612 chromosome, complete genome 12 crisprs csa3,cas3,DinG,DEDDh,cas4,WYL,RT 0 2 2 0

Results visualization

1. NZ_CP016594
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP016594_1 712588-712701 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP016594_2 1200229-1200323 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP016594_3 1693068-1693161 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP016594_4 2614481-2614583 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP016594_5 2822111-2822210 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP016594_6 2874347-2874498 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP016594_7 3334015-3334122 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP016594_8 3878991-3879090 Orphan NA
1 spacers
csa3

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP016594_9 3958567-3958692 Orphan NA
2 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP016594_10 4908233-4908363 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP016594_11 5022164-5022295 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP016594_12 5595785-5595848 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP016594_9 9.2|3958643|29|NZ_CP016594|PILER-CR 3958643-3958671 29 MH834627 Arthrobacter phage Ryan, complete genome 7359-7387 5 0.828
NZ_CP016594_11 11.1|5022214|32|NZ_CP016594|CRISPRCasFinder 5022214-5022245 32 NC_047751 Ralstonia phage phiITL-1, complete genome 24152-24183 5 0.844
NZ_CP016594_9 9.2|3958643|29|NZ_CP016594|PILER-CR 3958643-3958671 29 NZ_CP012185 Pseudonocardia sp. EC080619-01 plasmid pBCI1-2, complete sequence 372208-372236 7 0.759
NZ_CP016594_9 9.2|3958643|29|NZ_CP016594|PILER-CR 3958643-3958671 29 NZ_CP012182 Pseudonocardia sp. EC080610-09 plasmid pBCI2-1, complete sequence 675202-675230 7 0.759
NZ_CP016594_9 9.2|3958643|29|NZ_CP016594|PILER-CR 3958643-3958671 29 NZ_CP027859 Streptomyces clavuligerus strain ATCC 27064 plasmid pCLA1, complete sequence 414461-414489 8 0.724

1. spacer 9.2|3958643|29|NZ_CP016594|PILER-CR matches to MH834627 (Arthrobacter phage Ryan, complete genome) position: , mismatch: 5, identity: 0.828

actgggccgagggcctggggccacacgcc	CRISPR spacer
gtcaggccgagggcctggggccactcgcc	Protospacer
....******************** ****

2. spacer 11.1|5022214|32|NZ_CP016594|CRISPRCasFinder matches to NC_047751 (Ralstonia phage phiITL-1, complete genome) position: , mismatch: 5, identity: 0.844

gcaagcgccacccccaactgatcgagcgagcg-	CRISPR spacer
acaaccgccaccccgaactgatcg-gccagcgc	Protospacer
.*** ********* ********* ** **** 

3. spacer 9.2|3958643|29|NZ_CP016594|PILER-CR matches to NZ_CP012185 (Pseudonocardia sp. EC080619-01 plasmid pBCI1-2, complete sequence) position: , mismatch: 7, identity: 0.759

actgggccgagggcctggggccacacgcc	CRISPR spacer
gcctggaccagggcctggggccacacggt	Protospacer
.*. ** * ****************** .

4. spacer 9.2|3958643|29|NZ_CP016594|PILER-CR matches to NZ_CP012182 (Pseudonocardia sp. EC080610-09 plasmid pBCI2-1, complete sequence) position: , mismatch: 7, identity: 0.759

actgggccgagggcctggggccacacgcc	CRISPR spacer
gcctggaccagggcctggggccacacggt	Protospacer
.*. ** * ****************** .

5. spacer 9.2|3958643|29|NZ_CP016594|PILER-CR matches to NZ_CP027859 (Streptomyces clavuligerus strain ATCC 27064 plasmid pCLA1, complete sequence) position: , mismatch: 8, identity: 0.724

actgggccgagggcctggggccacacgcc	CRISPR spacer
gggaggacgggggcctggggccacacgat	Protospacer
.  .** **.***************** .

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 75574 : 168115 81 Gordonia_phage(35.71%) transposase,integrase attL 121026:121085|attR 129092:130469
DBSCAN-SWA_2 3761556 : 3770607 7 Gordonia_phage(33.33%) NA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage