CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP008886	Raoultella ornithinolytica strain A14 chromosome, complete genome	5 crisprs	DEDDh,WYL,DinG,cas3,csa3	1	3	3	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP008886_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP008886_1

429943-430165

Orphan

Consensus_repeat	Method
GCGTAGCCCGGGCCAGGGGTTTATCCCGCTGTCCGGGAACCTCCCCGCTGGCGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP008886_1

>merge|NZ_CP008886|1|429943-430165|CRISPRCasFinder
GCGTAGCCCGGGCCAGGGGTTTATCCCGCTGTCCGGGAACCTCCCCGCTGGCGCGACGCTTACCGGGGCTACGGTGGGGGCCGACGCGTAGCCCGGGCCAGGGGTTTATCCCGCTGTCCGGGAACCTCCCCGCTGGCGCTGTGTTTACCGGGGTACGGTGGGTGTCGGTGCGTAGCCCGGGCCAGGGGTTTATCCCGCTGTCCGGGAACCTCCCCGCTGGCGC

>NZ_CP008886|1|1|429943-430165|CRISPRCasFinder
GCGTAGCCCGGGCCAGGGGTTTATCCCGCTGTCCGGGAACCTCCCCGCTGGCGC	GACGCTTACCGGGGCTACGGTGGGGGCCGACGCGTAGCCCGGGCCAGGGGTTTATCCCGCTGTCCGGGAACCTCCCCGCTGGCGCTGTGTTTACCGGGGTACGGTGGGTGTCGGT
GCGTAGCCCGGGCCAGGGGTTTATCCCGCTGTCCGGGAACCTCCCCGCTGGCGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP008886.1\|WP_065905714.1\|430387_431296_+\|dihydrodipicolinate-synthase-family-protein	unknown	unknown	gnl\|CDD\|223406
NZ_CP008886.1\|WP_004857352.1\|421418_422279_-\|MurR/RpiR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224651
NZ_CP008886.1\|WP_065905712.1\|417566_418388_-\|TIM-barrel-protein	unknown	unknown	gnl\|CDD\|226615
NZ_CP008886.1\|WP_004857337.1\|415965_417468_-\|DUF853-domain-containing-protein	unknown	unknown	gnl\|CDD\|283518
NZ_CP008886.1\|WP_015585291.1\|420264_421074_+\|5-deoxy-glucuronate-isomerase	unknown	unknown	gnl\|CDD\|226241
NZ_CP008886.1\|WP_004857406.1\|440981_441869_-\|carbohydrate-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223472
NZ_CP008886.1\|WP_064359477.1\|440146_440971_-\|phosphodiesterase	unknown	unknown	gnl\|CDD\|277347
NZ_CP008886.1\|WP_015585288.1\|437764_439075_-\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270451
NZ_CP008886.1\|WP_004857345.1\|418740_420246_+\|CoA-acylating-methylmalonate-semialdehyde-dehydrogenase	unknown	unknown	gnl\|CDD\|143404
NZ_CP008886.1\|WP_048022980.1\|422428_424342_-\|5-dehydro-2-deoxygluconokinase	unknown	unknown	gnl\|CDD\|378281
NZ_CP008886.1\|WP_004857359.1\|424870_426811_+\|3D-(3,5/4)-trihydroxycyclohexane-1,2-dione-acylhydrolase-(decyclizing)	unknown	unknown	gnl\|CDD\|275170
NZ_CP008886.1\|WP_004857383.1\|431310_433278_+\|YjhG/YagF-family-D-xylonate-dehydratase	unknown	unknown	gnl\|CDD\|236189
NZ_CP008886.1\|WP_004857385.1\|433637_435017_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|236610
NZ_CP008886.1\|WP_004857366.1\|427914_428799_+\|sugar-phosphate-isomerase/epimerase	unknown	unknown	gnl\|CDD\|224007
NZ_CP008886.1\|WP_004857371.1\|428822_429722_+\|myo-inosose-2-dehydratase	unknown	unknown	gnl\|CDD\|275172
NZ_CP008886.1\|WP_015585287.1\|439067_440141_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|226359
NZ_CP008886.1\|WP_065905717.1\|441858_442731_-\|sugar-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224096
NZ_CP008886.1\|WP_004857393.1\|436653_437412_-\|IclR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224332
NZ_CP008886.1\|WP_004857363.1\|426858_427872_+\|Gfo/Idh/MocA-family-oxidoreductase	unknown	unknown	gnl\|CDD\|223745
NZ_CP008886.1\|WP_065905715.1\|435029_436649_+\|glycoside-hydrolase-family-43-protein	unknown	unknown	gnl\|CDD\|226038

Protein	Function_ID	Function_description	E-value
NZ_CP008886.1\|WP_065905714.1\|430387_431296_+\|dihydrodipicolinate-synthase-family-protein	gnl\|CDD\|223406	COG0329, DapA, Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane].	1.3186e-106
NZ_CP008886.1\|WP_004857352.1\|421418_422279_-\|MurR/RpiR-family-transcriptional-regulator	gnl\|CDD\|224651	COG1737, RpiR, Transcriptional regulators [Transcription].	2.96963e-78
NZ_CP008886.1\|WP_065905712.1\|417566_418388_-\|TIM-barrel-protein	gnl\|CDD\|226615	COG4130, COG4130, Predicted sugar epimerase [Carbohydrate transport and metabolism].	2.86125e-96
NZ_CP008886.1\|WP_004857337.1\|415965_417468_-\|DUF853-domain-containing-protein	gnl\|CDD\|283518	pfam05872, DUF853, Bacterial protein of unknown function (DUF853). This family consists of several bacterial proteins of unknown function. BMEI1370 is thought to be an ATPase.	0
NZ_CP008886.1\|WP_015585291.1\|420264_421074_+\|5-deoxy-glucuronate-isomerase	gnl\|CDD\|226241	COG3718, IolB, Uncharacterized enzyme involved in inositol metabolism [Carbohydrate transport and metabolism].	2.78369e-155
NZ_CP008886.1\|WP_004857406.1\|440981_441869_-\|carbohydrate-ABC-transporter-permease	gnl\|CDD\|223472	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism].	5.67643e-67
NZ_CP008886.1\|WP_064359477.1\|440146_440971_-\|phosphodiesterase	gnl\|CDD\|277347	cd07402, MPP_GpdQ, Enterobacter aerogenes GpdQ and related proteins, metallophosphatase domain. GpdQ (glycerophosphodiesterase Q, also known as Rv0805 in Mycobacterium tuberculosis) is a binuclear metallophosphoesterase from Enterobacter aerogenes that catalyzes the hydrolysis of mono-, di-, and triester substrates, including some organophosphate pesticides and products of the degradation of nerve agents. The GpdQ homolog, Rv0805, has 2',3'-cyclic nucleotide phosphodiesterase activity. GpdQ and Rv0805 belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.	3.32622e-89
NZ_CP008886.1\|WP_015585288.1\|437764_439075_-\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|270451	cd14748, PBP2_UgpB, The periplasmic-binding component of ABC transport system specific for sn-glycerol-3-phosphate; possesses type 2 periplasmic binding fold. This group includes the periplasmic component of an ABC transport system specific for sn-glycerol-3-phosphate (G3P) and closely related proteins from archaea and bacteria. Under phophate starvation conditions, Escherichia coli can utilize G3P as phosphate source when exclusively imported by an ATP-binding cassette (ABC) transporter composed of the periplasmic binding protein, UgpB, the transmembrane subunits, UgpA and UgpE, and a homodimer of the nucleotide binding subunit, UgpC. Members of this group belong to the type 2 periplasmic-binding fold superfamily. PBP2 proteins are comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. The majority of PBP2 proteins function in the uptake of small soluble substrates in eubacteria and archaea. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	5.03803e-110
NZ_CP008886.1\|WP_004857345.1\|418740_420246_+\|CoA-acylating-methylmalonate-semialdehyde-dehydrogenase	gnl\|CDD\|143404	cd07085, ALDH_F6_MMSDH, Methylmalonate semialdehyde dehydrogenase and ALDH family members 6A1 and 6B2. Methylmalonate semialdehyde dehydrogenase (MMSDH, EC=1.2.1.27) [acylating] from Bacillus subtilis is involved in valine metabolism and catalyses the NAD+- and CoA-dependent oxidation of methylmalonate semialdehyde into propionyl-CoA. Mitochondrial human MMSDH ALDH6A1 and Arabidopsis MMSDH ALDH6B2 are also present in this CD.	0
NZ_CP008886.1\|WP_048022980.1\|422428_424342_-\|5-dehydro-2-deoxygluconokinase	gnl\|CDD\|378281	pfam09863, DUF2090, Uncharacterized protein conserved in bacteria (DUF2090). This domain, found in various prokaryotic carbohydrate kinases, has no known function.	0
NZ_CP008886.1\|WP_004857359.1\|424870_426811_+\|3D-(3,5/4)-trihydroxycyclohexane-1,2-dione-acylhydrolase-(decyclizing)	gnl\|CDD\|275170	TIGR04377, 3D-35/4-trihydroxycyclohexane-12-dione_hydrolase, 3,5/4-trihydroxycyclohexa-1,2-dione hydrolase. Members of this protein family, 3,5/4-trihydroxycyclohexa-1,2-dione hydrolase (iolD), represent one of eight enzymes in a pathway converting myo-inositol to acetyl-CoA. IolD hydrolyzes the cyclic molecule 3D-(3,5/4)-trihydroxycyclohexane-1,2-dione to yield 5-deoxy-D-glucuronic acid. TPP is a cofactor. [Energy metabolism, Sugars].	0
NZ_CP008886.1\|WP_004857383.1\|431310_433278_+\|YjhG/YagF-family-D-xylonate-dehydratase	gnl\|CDD\|236189	PRK08211, PRK08211, YjhG/YagF family D-xylonate dehydratase.	0
NZ_CP008886.1\|WP_004857385.1\|433637_435017_+\|MFS-transporter	gnl\|CDD\|236610	PRK09669, PRK09669, putative symporter YagG; Provisional.	0
NZ_CP008886.1\|WP_004857366.1\|427914_428799_+\|sugar-phosphate-isomerase/epimerase	gnl\|CDD\|224007	COG1082, IolE, Sugar phosphate isomerases/epimerases [Carbohydrate transport and metabolism].	1.00858e-41
NZ_CP008886.1\|WP_004857371.1\|428822_429722_+\|myo-inosose-2-dehydratase	gnl\|CDD\|275172	TIGR04379, myo-inositol_catabolism_protein, myo-inosose-2 dehydratase. Members of this family include the enzyme myo-inosose-2 dehydratase, product of the gene iolE, as found in inositol utilization cassettes in many species. [Energy metabolism, Sugars].	2.0103e-155
NZ_CP008886.1\|WP_015585287.1\|439067_440141_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|226359	COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism].	5.26604e-156
NZ_CP008886.1\|WP_065905717.1\|441858_442731_-\|sugar-ABC-transporter-permease	gnl\|CDD\|224096	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism].	1.23955e-76
NZ_CP008886.1\|WP_004857393.1\|436653_437412_-\|IclR-family-transcriptional-regulator	gnl\|CDD\|224332	COG1414, IclR, Transcriptional regulator [Transcription].	2.4381e-89
NZ_CP008886.1\|WP_004857363.1\|426858_427872_+\|Gfo/Idh/MocA-family-oxidoreductase	gnl\|CDD\|223745	COG0673, MviM, Predicted dehydrogenases and related proteins [General function prediction only].	3.22629e-60
NZ_CP008886.1\|WP_065905715.1\|435029_436649_+\|glycoside-hydrolase-family-43-protein	gnl\|CDD\|226038	COG3507, XynB, Beta-xylosidase [Carbohydrate transport and metabolism].	0

>NZ_CP008886.1|WP_004857371.1|428822_429722_+|myo-inosose-2-dehydratase
MNKDNVKLAIAPIGWTNDDMPELGSENTFQQIVSEMALAGFSGSEVGSKYPRDPAVLKPMLDIRGIQICNAWFSTFFANGQREKTIDEFVNHMNFLQAMGAKVIGCSEQSGSIQGLEKPILGEAKPCFSEEEWQRVAEGYNTLGRLAAEKGMQVCLHHHMGTGIQTTEEIDKFMSLVDDKVFLLYDTGHAWYSEGGEAPMLAILEKYLPRINHVHLKDVRPSVIEQVRREGLSFLDGVKKGTFTVPGDGVIDFRPVFKLLDDRGYKGWMVVEAEQDPALANPFEYALKARKYIRETAGI
>NZ_CP008886.1|WP_004857366.1|427914_428799_+|sugar-phosphate-isomerase/epimerase
MKIAFDVDVIRDLGITRMVHQVAEWGYKYIEQSPHPQINPFYKHPRAGREVIAEYKQALRETGVEISSFICVYRWSGPDELRRQAAVKNWKRLIEVAVEMGVQVINTEFSGDPNQPEICEEMFYRSMDELLPIFEREGIRVEIQAHPWDFCEEHNETVDIVKSFRSENVKYVYSVPHTFFYDKGKGEVEKMLRYAGGDLSHVLIADTRNHTKHCRYIVNPPGVDAAVHQHVGVGEGDVDFDALFRTLREMNFAEQTFKVGGAPIVAASLFGYPEKMKYQAVETRELIERELLRR
>NZ_CP008886.1|WP_004857363.1|426858_427872_+|Gfo/Idh/MocA-family-oxidoreductase
MSLKLGVIGAGAIGKEHIRRCTQVLQGATVVAVSDINAESARAAVALPGVQAEIYTDGHDVIRSGDVDAILVTSWDPTHEEYTLAAIAAGKPVFCEKPLAMSAEGCRRIVDAEMKAGRRLVQVGFMRPYDEGYLALKKVIDDGDIGAPLMLHCAHRNQSVGENYTTDMAITNTLIHELDVLRWLLNDDYRSVQVRFPRSTSHTHPRLRDPQIVSFETRKGTLIDVEVFVNCQYGYDIQCEVVGETGIARLPEPSAIQMRKSANLSTAILTDWKDRFIKAYDVELQAFINDVKAGQLQGPSAWDGYAASVAADACLQAQESSEPVAVTLPECPAFYQR
>NZ_CP008886.1|WP_004857359.1|424870_426811_+|3D-(3,5/4)-trihydroxycyclohexane-1,2-dione-acylhydrolase-(decyclizing)
MGKLRLTMAQALVKFLDNQFLDVDGEEHKFVKGIFAIFGHGNVLGLGQALEQDSGDMRVFQGRNEQGMAHVATGFARQSLRRQIIACTSSVGPGAANMITAAATATANRIPLLLLPGDVFATRQPDPVLQQVEQSYDLSISTNDAFRAVSKYWDRITRPEQLMSACINAMRVLTDPAETGAVTLCLPQDVQGEAWDYPESFFVRRVHRLDRRPASAAQLADAVAAIKASRKPLIICGGGVKYAGAGEALSRFAERYGIPFAETQAGKGTVVSSHPLNVGGVGETGCLAANLLAKEADLVIGIGTRFSDFTTSSKWLFQHPGVRFLNVNVSNFDAWKLDGIPLLADAREALTSLDSALAGEGWQASWGAQIDSVQSRQLKETQRVYQAVWQEKAFVPEVDDALDRESVYREFRQITDSTLTQSSVLGVLNETLPADAVIVAAAGSLPGDLQRVWRNRAPNTYHVEYGYSCMGYEVNAALGVKLAQPQTEVYSLVGDGSFMMLHSELVTSLQERAKINVVLLDNMANGCINNLQIGHGMGSFGTEFRYRSAENGQLQGGLVPVDFATIAAGYGCKTWRVTTLNELRQALDAARRETISTLIDIKVLPKTMVHSYGSWWNVGVAQTALSERIRKVAEMINEKRAEARDY
>NZ_CP008886.1|WP_048022980.1|422428_424342_-|5-dehydro-2-deoxygluconokinase
MNAAVKRLDVICIGRVAVDLYAQQIGARLEDVASFSKYLGGSSGNVAFGTAIQGLKSAMLARVGDEHNGRFLRETLARAGVDTEYLITDKQRLTALVMLGIKDQETFPLIFYRDNCADMALVPEDINEEYIASSRALAVTGTHLSHASTRAAVLKALEYARRHGLRTALDIDYRPVLWGLTSLGDGETRFIESGPVTSQLQEVLHLFDLVVGTEEEFHIAGGSTDTLTALKNVRHATKATLVCKRGPMGCVVLEGDIPDSWDSIPLQQGVRVDVLNVLGAGDAFMSGLLRGWLNDEGWEQACRYANACGALVVSRHGCAPAMPTKVELDDYLLRAESVPRPDIDARLNHLHRVTSRRQQWPELCIFAFDHRKQLADLAHETGCDPASIPQLKLLLLAAAEAAAKEAGLEQRSGILADGTYGQSSLNAITGKGWWIGRPIELPGSRPLRLEHGNIGSQLIDWPLEHVVKCLVFYHPADPAPLRAEQDALLLEVWQACNKSGHELLLEVILPENGPDKDERHYRTMLEHFYQLGIQPDWWKLPPLSSASWEKIAGLIAREDPWCRGILLLGLDAPSDRLRAGFAEAAGHPIIKGFAVGRTIFGQPSRRWMAGELSDEALIGEVKQNYLRLIDYWREARG
>NZ_CP008886.1|WP_004857352.1|421418_422279_-|MurR/RpiR-family-transcriptional-regulator
MANNPTQLTILQDEIRRRYDTLSKRLKQVARYILDNSNSVAFDTVASIAQQADVPPSTLIRFANAFGFSGFNEMKQMFRQHLMEETANYTERARLFRQTTNDETSPPETPTEILNMFTMVNTQALQQLAMQTSGDDLERAVGLLAEAENIYVIGLRRSFSVASYLTYALRHLDRKAFLIDGLGGMFTEQLSLVGPKDVVVAVSFSPYAREVVELVELGAQRKARQIAITDSQVSPLAAFSDVCFVVREAQVDGFRSQVASLCLAQTLAVSLALNSSKEPQTQQNLA
>NZ_CP008886.1|WP_015585291.1|420264_421074_+|5-deoxy-glucuronate-isomerase
MSLLAKSRKEGQIQHITPQSAGWRYIGFDVWMLKKGQSITLESGERELCLVLVAGLASVKTTKADFPGLGQRMSPFERTPPWAVYVPTQDKVEVTADSDLELAVCSAPGKGTLPARVIRPQDVGVEHRGKGRNQRLVHNILPDNAQADCLLVVEVYTDEGATSSWPSHKHDTAQPGKETQLEETYYHRFDPPQGFALQRVYTDDRSLDACMAPYNHDVVMVPRGYHPVATIAGYDSYYLNVMAGPERKWLFTWEEDHAWINSPDYPRHD
>NZ_CP008886.1|WP_004857345.1|418740_420246_+|CoA-acylating-methylmalonate-semialdehyde-dehydrogenase
MTITGNFIGGKTVTSSSNETMPVYDPATGKVVREVTLSTAQEVSDAIQVARDAFESWSRTTPLRRARVLFNFKMLLEQHAEELAGIIVSEHGKVWSDALGELTRGLEVVEFACGIPHLIKGEYSSDVGTGVDSYSLMQPLGVVAGITPFNFPAMVPMWMFPLALACGNSFVLKPPALAPTAAVRLAELLKEAGLPDGVFNVVHCSNDDAEQLYTDPRIAAVSFVGSSGVAEYIYKTASAHGKRVQAFGAAKNHAIVMPDADLDATVNAIMGGAFGSAGERCMALPVVVAVGDETADKLIARLKPLVEALKVGPGCMRGKEENEMGPVVSDTHQKKVLGYIDKGASEGAKLVVDGRKLRVSGYDDGYYVGGTLFDNVTPDMTIWREEIFGPVLGIVRVADYHSALELVNSHEFGNGSAVFTSNGHTAREFVHDVQAGMVGVNVPVPVPMAFHSFGGWKRSVFGALNVHGPDGVRFYTRMKTATVRWPQGQQTVSEFSMPTLG
>NZ_CP008886.1|WP_065905712.1|417566_418388_-|TIM-barrel-protein
MAIALQRFCLNRKIAPSLSIEAFFRLVNSLGLNKVELRNDLPTGKVTDDLSHQQVRELADRYHIEILTINAVYPFNRRTEQVRGLAESLLQEARAIGAKSLVLCPLNDGSEVPASETLSALRDLSPLFSFYGVRGLVEPLGFPQSSLRSAAQAQTLIRDAKVPFKLLIDTFHHHLYPQADAEFSQVDIADIGLVHLSGVEDARPRENLTDDERIMLTEKDRLQTCKQIKHLEARGYQGVYAFEPFAPELASWSEEDIRRETERSIALIQHHCA
>NZ_CP008886.1|WP_004857337.1|415965_417468_-|DUF853-domain-containing-protein
MSAPLLIARTREKQLHLLPGMANRHGLITGATGTGKTVTLQKLAESFSEIGVPVFMADVKGDLTGIAAAGQNSEKLQARLEKIGVTDWQPHANPVVTWDIFGEKGHPVRATVSDLGPLLLSRLLNLNEVQSGVLNIIFRIADDRGLLLLDFKDLRAITRYIGDNAKAFQNQYGNISSASVGAIQRGLLTLEQQGAEHFFGEPMLDIQDWMRLDENGKGVINILSAEKLYQMPKLYAASLLWMLSELYERLPEAGDLEKPKLVFFFDEAHLLFNDAPQVLLDKIEQVIRLIRSKAVGVYFVSQNPSDIPDAVLGQLGNRVQHALRAFTPKDQKAVKTAAQTMRANPAFSTEQAIQELGTGEALISFLDEKGSPSVVERAMVIAPCSRMGPVTDDERNGLINHSPLYGKYEDEVDRESAFEKLQQGVQATAEQQNAPPAKGATADLDDGILGGLKDILFGTTGPRGGKRDGLVQTAAKSATRQITNQIVRGMLGSLLGGRRR
>NZ_CP008886.1|WP_065905714.1|430387_431296_+|dihydrodipicolinate-synthase-family-protein
MPQTVQFSGIIPPVSTIFTADGQFDKPGTSALIDDMIAAGVDGLFFLGSGGEFSQLNADERKAIAAFAIAHVDRRVPVLIGTGGTNARETIELSQHAQQAGADGIVVINPYYWKVSEPNLIRYFQQVADSVTLPVLLYNFPALSGQDLTPALVKTLADSRSNIVGIKDTIDSVAHLRSMIETVKSAHPHFSVLCGYDDHLFNTLLLGGDGAISASGNFAPQISVKLLQAFRDGNLAEAARYHQTLLQIPQLYQLDTPFVNVIKEAIVLCGRPISTHVLPPSSPLDEAKKRQLKTLLQQLRLC
>NZ_CP008886.1|WP_004857383.1|431310_433278_+|YjhG/YagF-family-D-xylonate-dehydratase
MAIETIFTPQNDAFYAVITHAAGPQGALPLTPQMLMESPSGNLFGMTQNAGMGWDANKLTGKEVLIIGTQGGIRAGDGRPVALGYHTGHWEIGLQMQAAAREITRNGGIPFAAFVSDPCDGRSQGTHGMFDSLPYRNDAAIVFRRLIRSLPTRRAVIGVATCDKGLPATMIALAAMHDLPTILVPGGATLPPTFGEDAGKVQTIGARYANHELSLQEAAELGCRACASPGGGCQFLGTAGTSQVVAEALGLALPHSALAPSGQDVWLEISRQSARAVSELDNRGITTRDILTDKAIENAMVIHAAFGGSTNLLLHIPAIAHAAGCTIPDVAHWTRINRSVPRLVSVLPNGPDYHPTVRAFLAGGVPEVMLHLRDLGLLHLDAMTVTGQTVGENLDWWQTSERREKFRQCLREQDGVDPDDVILPPARAKAKGLTSTVAFPVGNIAPEGSVIKATAIDPSVVDDDGVYRHTGRARVFVSEARAIKAIKNGEIEQGDIMVVIGGGPSGTGMEETYQLTSALKHVSWGKTVSLITDARFSGVSTGACFGHVAPEALAGGPIGKLRDDDVIEIVVDRLALTGHVNFIGTAHQRLTPEEGAAELAARTPHPDLHAHDFLPDDTRLWAALQSVSGGTWKGCIYDTDKIIEVINAGKKALGI
>NZ_CP008886.1|WP_004857385.1|433637_435017_+|MFS-transporter
MQLTMKDKIGYGLGDTACGFVWQATMFLLAYFYTDVFGLSAGIMGTLFLVSRVLDAVTDPLMGLLVDRTRTRYGQFRPFLLWGAIPFGIVCMLTFYTPDFSAQGKIIYACVTYILLTLVYTFVNVPYCAMPGVITADPKERHALQSWRFFLAAAGSLAISGIALPLVSIIGKGNEQVGYFGAMCVLGLTGVVLLYVCFFTTRERYTFDVQPGASVAKDLKLLFGNTQWRIMCAFKMMATCSNVVRGGATLYFVKYVMDHPELAMQFLLYGSIATMFGSLASSRLLGRFDRVKAFKGIIVVYSLISLLIFVTPADYIALIFALNIVFLFVFNTTTPLQWLMASDVVDYEESRSGRRLDGLVFSTYLFSLKIGLAIGGAVVGWILAYVNYSASSSVQPVEVLTTIKILFCVVPVVLYIGMFTMLSLYKLTDARVEAISQQLRQHRAAQEEGVPAAAAATSH
>NZ_CP008886.1|WP_065905715.1|435029_436649_+|glycoside-hydrolase-family-43-protein
MYTITNPILTGFNPDPSMCRQGEDYYIATSTFEWFPGVRIYHSRDLKNWSLVSTPLDRVSMLDMKGNPDSGGIWAPCLSYADGLFWLLYTDVKIVDSPWKNGRNYLVTAPSIEGPWSEPIAMGNGGFDPSLFHDSDGRKYYIYRPWGPRHHSDPHCTIVLQEYFPQTQTLSKTRKTLFTGTALRYTEGAHLYHKEGWYYLLVAEGGTSYEHAVVVLRAKNIDGPYELHPDGTLMTSWHLPENPLQKSGHGSLLETHTGEWYMAYLTSRPQRLPGVPLLASGGRGYCSLGRETGIARIAWHDGWPSVEGGKHAQLNVPGPQMAESRVVADERWREEFNHPTLNPELQTLRIPFDDTLGSLNARPGFLRLYGNDSLNSTFTQSTVARRWQHFAFRAETRMEFAPQNFQQSAGLTCYYNSKNWSYCFVDYEEGQGRTIKVLQLDHNVPSWPLHEHPIAVPDAAQSIWLRVDVDHLVYRYSYSFDGEQWHTVPVEYAAWKLSDDYIGGRGFFTGAFVGLHCEDISGDGCYADFDYFSYEPVVG
>NZ_CP008886.1|WP_004857393.1|436653_437412_-|IclR-family-transcriptional-regulator
MPIIQSVERALTILDLFNEQATELKITDISKQMGLSKSTLHSLLKTLQLHGYIDQNPENDKYRLGMKLVERGHFVVGTMDIRQKAKSWLTDLSQRTGQTTHLGILDGHEGVYIEKIEGRLAAIAYSRIGRRLPIHATAIGKVLIAWLSEAEQNTLLEGYQYTPFTPATLTSREALLAALAQTRAQGYAQDSEENEQGVRCVAVPVWNHESRVIAALSLSTLTSRVDEAELARYRALLEEAGRQLSKALGYPA
>NZ_CP008886.1|WP_015585288.1|437764_439075_-|ABC-transporter-substrate-binding-protein
MLKPLTALAVGLSLALSGAALAKEKIDFMFPAPVDGKLTMEMTRVIKAFNDSQQDVEVRGIFTGNYDTTKIKAESAQKAGQPPALVIMSANFTTDLALKDEILPMDDLFQYGDQKAGDFLVKEFWPAMHKNAQVMGTTYAIPFHNSTPILYYNKTMFDRAGIAQPPQTWAELLADAKKLTDESKGQWGIMLPSTNDDYGGWIFSALVRANGGKYFNEDYPGEVYYNAPTTIGALRFWQDLIYKDKVMPSGVLNSKQISASFFSGKVGMAMLSTGALGFMRENSKDFELGVAMLPAKEQRAVPIGGASLVSFKGINDAQKKAAYQFLTYLVSPQVNGAWSRFTGYFSPRKASYDTPEMKAYLQQDPRAAIALEQLKYAHPWYSTWETVAVRKAMENQLAAVVNDAKVTPEAAVQTAQKEADTLMKPYVDKTALAEVK
>NZ_CP008886.1|WP_015585287.1|439067_440141_-|ABC-transporter-ATP-binding-protein
MLSLQNISKRFDGKPALDALSLDIHEGEFVVLVGPSGCGKSTLLRLLAGLEPVSEGEIWLHDQNITTLSPRERNFAMIFQNYALFPHLSVQDNITFGMKVRKEDKASWQPRVDKVAQMLQLETLLDRKPAKLSGGQRQRVAMARAIVRNPRLFLMDEPLSNLDARLRSEVRDSIMDLHQQLKTSTVYVTHDQTEAMSMADRIVVMNGGHVQQVGRPEYLYAHPANLFVAGFIGSPAMNLLSLPCADGEVQLGDLRHPLPPHYRDESRVWFGIRPEHISDRVEEGHLRLCATVLQRELMGADYLLHVSTPIGTLRFSRRHRGAVPEKGDTLILGFSPADIHLFHAEQQHNLLQEIDHA
>NZ_CP008886.1|WP_064359477.1|440146_440971_-|phosphodiesterase
MLLAQISDTHFRSRGQKLYGFIDVNAANADVVSQLNALAERPDAVVVSGDIVNCGRPQEYEVARQILGSLNYPLYLIPGNHDDKALFLEYLHPLCPQLGSDPQNMHYAVDDFATRLLFIDSSRAGTSSGWLTDETIKWLEAQLFDGGDKPATVFMHHPPLPLGNAQMDPIACENGHRLLALVERFPSLTRIFCGHNHSLTLTQYRQAIISTIPGTVHQVPYFHEDRRPYYDLSPASCLMHRQVGEQWVSYQHPLTHHAGPWLYDENISCPTEER
>NZ_CP008886.1|WP_004857406.1|440981_441869_-|carbohydrate-ABC-transporter-permease
MSAEASPLVVRSPVASLPLWLRLRRSQPFTLSVLMCCLALLWVSPFIWMLATAFSATTFGEDMASLLPRLPLTLDNFRDAWASADWLSLYANTLIFTFGTFFVQLLTITTAGYVFACHQFRGKQTLFLLFLVQLMIMPVVMMVPNMLTLKTFGLLNTLTGVMMPYFTSAFGVFLMRQAFLAIPKELEEAALMEGCRWWQVLFRVLLPMSWPSVLAFATVSITYHWNEYLWPLMMLNDPDKQVLTVGLVSFAMGAESGGQWGTIGAGTLMVCLPLMLAFILFQKQFLRSFGFSGIK
>NZ_CP008886.1|WP_065905717.1|441858_442731_-|sugar-ABC-transporter-permease
MRKTWLPWLILSPSLLFLLLFTWFPLGRSVYDSLFDTRMASDNAPFVGLDNFVRLFADNIFWQSLLNNLLYILLTVVPGVTLALLLAVALSENHRVNRWLRTAFFFPMIIPMVSAAALWLFIFMPGLGLLDHYLAKLFGPMNNNWLGRSNSALLALALIGVWKFAGYYMLFFLAGLQSIPASTREAAIMEGATRSQVFFKVTLPLLRPTLSFVITTALIYSITQIDHVAVMTRGGPDNATTVLLYYIQNLAWDTHDLGKASAATFLTLAGLFAFSLLNLKLLEKGAHYER

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Crispr_ID: NZ_CP008886_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP008886_2

836627-836738

Orphan

Consensus_repeat	Method
CGGCCCATCGGGTGACGGGCAGGACGCCCGTCATACAAAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP008886_2

>merge|NZ_CP008886|2|836627-836738|CRISPRCasFinder
CGGCCCATCGGGTGACGGGCAGGACGCCCGTCATACAAAATCGCCGGGAGCGATTTTTAACGTCGCCCGCGACGGCCCATCGGGTGACGGGCAGGACGCCCGTCATAAAAAA

>NZ_CP008886|2|2|836627-836738|CRISPRCasFinder
CGGCCCATCGGGTGACGGGCAGGACGCCCGTCATACAAAA	TCGCCGGGAGCGATTTTTAACGTCGCCCGCGA
CGGCCCATCGGGTGACGGGCAGGACGCCCGTCATAAAAAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP008886.1\|WP_004858112.1\|839721_840447_+\|UMP-kinase	unknown	unknown	gnl\|CDD\|239787
NZ_CP008886.1\|WP_004858096.1\|829657_831097_+\|serine-endoprotease-DegP	unknown	unknown	gnl\|CDD\|236802
NZ_CP008886.1\|WP_004858106.1\|836761_837556_-\|type-I-methionyl-aminopeptidase	unknown	unknown	gnl\|CDD\|235576
NZ_CP008886.1\|WP_015585106.1\|838722_839574_+\|elongation-factor-Ts	unknown	unknown	gnl\|CDD\|236491
NZ_CP008886.1\|WP_004858091.1\|827225_827924_-\|5'-methylthioadenosine/S-adenosylhomocysteine-nucleosidase	unknown	unknown	gnl\|CDD\|180148
NZ_CP008886.1\|WP_004858103.1\|833032_833857_-\|2,3,4,5-tetrahydropyridine-2,6-dicarboxylate-N-succinyltransferase	unknown	unknown	gnl\|CDD\|236996
NZ_CP008886.1\|WP_004858114.1\|840597_841155_+\|ribosome-recycling-factor	unknown	unknown	gnl\|CDD\|178850
NZ_CP008886.1\|WP_004858107.1\|837879_838605_+\|30S-ribosomal-protein-S2	unknown	unknown	gnl\|CDD\|235396
NZ_CP008886.1\|WP_065905836.1\|825666_826290_-\|TRIC-cation-channel-family-protein	unknown	unknown	gnl\|CDD\|182564
NZ_CP008886.1\|WP_004858125.1\|845870_848300_+\|outer-membrane-protein-assembly-factor-BamA	unknown	unknown	gnl\|CDD\|236834
NZ_CP008886.1\|WP_065905838.1\|841394_842597_+\|1-deoxy-D-xylulose-5-phosphate-reductoisomerase	unknown	unknown	gnl\|CDD\|235472
NZ_CP008886.1\|WP_004858104.1\|833892_836556_-\|bifunctional-uridylyltransferase/uridylyl-removing-protein-GlnD	unknown	unknown	gnl\|CDD\|235329
NZ_CP008886.1\|WP_004858089.1\|826432_827233_-\|vitamin-B12-ABC-transporter-substrate-binding-protein-BtuF	unknown	unknown	gnl\|CDD\|179575
NZ_CP008886.1\|WP_048024042.1\|828008_829523_+\|dGTPase	unknown	unknown	gnl\|CDD\|235320
NZ_CP008886.1\|WP_015585103.1\|844486_845839_+\|sigma-E-protease-regulator-RseP	unknown	unknown	gnl\|CDD\|182723
NZ_CP008886.1\|WP_032716598.1\|843617_844475_+\|phosphatidate-cytidylyltransferase	unknown	unknown	gnl\|CDD\|183240
NZ_CP008886.1\|WP_004858098.1\|831287_832445_+\|CdaR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|183155
NZ_CP008886.1\|WP_004858085.1\|825264_825609_+\|iron-sulfur-cluster-insertion-protein-ErpA	unknown	unknown	gnl\|CDD\|184186
NZ_CP008886.1\|WP_004858119.1\|842846_843605_+\|(2E,6E)-farnesyl-diphosphate-specific-ditrans,polycis-undecaprenyl-diphosphate-synthase	unknown	unknown	gnl\|CDD\|182326
NZ_CP008886.1\|WP_004858100.1\|832535_832925_-\|DUF3461-family-protein	unknown	unknown	gnl\|CDD\|184234

Protein	Function_ID	Function_description	E-value
NZ_CP008886.1\|WP_004858112.1\|839721_840447_+\|UMP-kinase	gnl\|CDD\|239787	cd04254, AAK_UMPK-PyrH-Ec, UMP kinase (UMPK)-Ec, the microbial/chloroplast uridine monophosphate kinase (uridylate kinase) enzyme that catalyzes UMP phosphorylation and plays a key role in pyrimidine nucleotide biosynthesis; regulation of this process is via feed-back control and via gene repression of carbamoyl phosphate synthetase (the first enzyme of the pyrimidine biosynthesis pathway). The UMP kinase of E. coli (Ec) is known to function as a homohexamer, with GTP and UTP being allosteric effectors. Like other related enzymes (carbamate kinase, aspartokinase, and N-acetylglutamate kinase) the E. coli and most bacterial and chloroplast UMPKs (this CD) have a conserved, N-terminal, lysine residue proposed to function in the catalysis of the phosphoryl group transfer, whereas most archaeal UMPKs appear to lack this residue and the Pyrococcus furiosus structure has an additional Mg ion bound to the ATP molecule which is proposed to function as the catalysis instead. Members of this CD belong to the Amino Acid Kinase Superfamily (AAK).	2.94379e-146
NZ_CP008886.1\|WP_004858096.1\|829657_831097_+\|serine-endoprotease-DegP	gnl\|CDD\|236802	PRK10942, PRK10942, serine endoprotease DegP.	0
NZ_CP008886.1\|WP_004858106.1\|836761_837556_-\|type-I-methionyl-aminopeptidase	gnl\|CDD\|235576	PRK05716, PRK05716, methionine aminopeptidase; Validated.	8.31953e-170
NZ_CP008886.1\|WP_015585106.1\|838722_839574_+\|elongation-factor-Ts	gnl\|CDD\|236491	PRK09377, tsf, elongation factor Ts; Provisional.	1.33739e-155
NZ_CP008886.1\|WP_004858091.1\|827225_827924_-\|5'-methylthioadenosine/S-adenosylhomocysteine-nucleosidase	gnl\|CDD\|180148	PRK05584, PRK05584, 5'-methylthioadenosine/adenosylhomocysteine nucleosidase.	5.79627e-138
NZ_CP008886.1\|WP_004858103.1\|833032_833857_-\|2,3,4,5-tetrahydropyridine-2,6-dicarboxylate-N-succinyltransferase	gnl\|CDD\|236996	PRK11830, dapD, 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase; Provisional.	0
NZ_CP008886.1\|WP_004858114.1\|840597_841155_+\|ribosome-recycling-factor	gnl\|CDD\|178850	PRK00083, frr, ribosome recycling factor; Reviewed.	6.79708e-112
NZ_CP008886.1\|WP_004858107.1\|837879_838605_+\|30S-ribosomal-protein-S2	gnl\|CDD\|235396	PRK05299, rpsB, 30S ribosomal protein S2; Provisional.	1.64887e-172
NZ_CP008886.1\|WP_065905836.1\|825666_826290_-\|TRIC-cation-channel-family-protein	gnl\|CDD\|182564	PRK10578, PRK10578, hypothetical protein; Provisional.	1.06502e-129
NZ_CP008886.1\|WP_004858125.1\|845870_848300_+\|outer-membrane-protein-assembly-factor-BamA	gnl\|CDD\|236834	PRK11067, PRK11067, outer membrane protein assembly factor YaeT; Provisional.	0
NZ_CP008886.1\|WP_065905838.1\|841394_842597_+\|1-deoxy-D-xylulose-5-phosphate-reductoisomerase	gnl\|CDD\|235472	PRK05447, PRK05447, 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional.	0
NZ_CP008886.1\|WP_004858104.1\|833892_836556_-\|bifunctional-uridylyltransferase/uridylyl-removing-protein-GlnD	gnl\|CDD\|235329	PRK05007, PRK05007, bifunctional uridylyltransferase/uridylyl-removing protein GlnD.	0
NZ_CP008886.1\|WP_004858089.1\|826432_827233_-\|vitamin-B12-ABC-transporter-substrate-binding-protein-BtuF	gnl\|CDD\|179575	PRK03379, PRK03379, vitamin B12-transporter protein BtuF; Provisional.	6.95389e-161
NZ_CP008886.1\|WP_048024042.1\|828008_829523_+\|dGTPase	gnl\|CDD\|235320	PRK04926, dgt, deoxyguanosinetriphosphate triphosphohydrolase; Provisional.	0
NZ_CP008886.1\|WP_015585103.1\|844486_845839_+\|sigma-E-protease-regulator-RseP	gnl\|CDD\|182723	PRK10779, PRK10779, sigma E protease regulator RseP.	0
NZ_CP008886.1\|WP_032716598.1\|843617_844475_+\|phosphatidate-cytidylyltransferase	gnl\|CDD\|183240	PRK11624, cdsA, phosphatidate cytidylyltransferase.	0
NZ_CP008886.1\|WP_004858098.1\|831287_832445_+\|CdaR-family-transcriptional-regulator	gnl\|CDD\|183155	PRK11477, PRK11477, CdaR family transcriptional regulator.	0
NZ_CP008886.1\|WP_004858085.1\|825264_825609_+\|iron-sulfur-cluster-insertion-protein-ErpA	gnl\|CDD\|184186	PRK13623, PRK13623, iron-sulfur cluster insertion protein ErpA; Provisional.	2.61532e-81
NZ_CP008886.1\|WP_004858119.1\|842846_843605_+\|(2E,6E)-farnesyl-diphosphate-specific-ditrans,polycis-undecaprenyl-diphosphate-synthase	gnl\|CDD\|182326	PRK10240, PRK10240, (2E,6E)-farnesyl-diphosphate-specific ditrans,polycis-undecaprenyl-diphosphate synthase.	9.29491e-165
NZ_CP008886.1\|WP_004858100.1\|832535_832925_-\|DUF3461-family-protein	gnl\|CDD\|184234	PRK13677, PRK13677, DUF3461 family protein.	3.48268e-81

>NZ_CP008886.1|WP_004858104.1|833892_836556_-|bifunctional-uridylyltransferase/uridylyl-removing-protein-GlnD
MSNSLPDTVSPTLSGQPENPGSWPQGDLTCATIKAHLDIFQRWLGEAFDSGIAAGQLIEARTEFIDQLLQRLWIDFGFGPVSDLALVAVGGYGRGELHPLSDVDLLILSRKKLSDEQAQKVGELLTLLWDIKLEVGHSVRTLEECLLEGLSDLSVATNLIESRLLIGDVALFLELQKHIFSDGFWPSEKFFAAKVEEQNIRHQRYHGTSYNLEPDVKSSPGGLRDIHTLQWVARRHFGATSLDEMVGFGFLTEAERNELNECLHQLWRIRFALHLELNRYDNRLLFDRQLSVARRLRYEGEGNQPIEYMMKDFFRVTRRVSELNHMLLQLFDEAILALTEDEKPRPIDDDFQLRGTLIDLRDDTLFMREPQAILRMFYIMVRNSNITGIYSTTLRHLRHARRHLTQPLCYIPEARTIFLSMLRHQGAVSRGLLPMHRHSVLWAYMPQWSHIVGQMQFDLFHAYTVDEHTIRVMLKLESFAKEETRSRHPLCVELWPRLTHPELILIAALFHDIAKGRGGDHSVLGAQDVLKFAELHGLNSRETQLVAWLVRHHLLMSVTAQRRDIQDPEVIKQFAEEVQTENRLRYLVCLTVADICATNETLWNSWKQSLLRELYFATEKQLRRGMQSTPDMRERVRHHQLQALALLRMENINEEALHQIWNRCRANYFVRHTPNQLAWHARNLLKHDLSKPMILLSSQATRGGTEIFIWSPDRPYLFAAVCGELDRRNLSVHDAQIFTTRDGMAMDTFIVLEPDGSPLSADRHEMIRHGLEQTITQRSWQPPAPRRQAAKLRHFSVVTEVNFLPTHTDRKSFLELIALDQPGLLARVGQVFADLNISLHGARITTIGERVEDLFIIATADRRGLNNALQQEVQQRLTEALNPNDKG
>NZ_CP008886.1|WP_004858103.1|833032_833857_-|2,3,4,5-tetrahydropyridine-2,6-dicarboxylate-N-succinyltransferase
MQQLQNVIESAFERRADITPANVDTVTREAVNQVISLLDSGALRVAEKIDGQWVTHQWLKKAVLLSFRINDNQVIDGAESRYFDKVPMKFADYDEARFQKEGFRVVPPAAVRQGAFIARNTVLMPSYVNIGAYVDEGSMVDTWATVGSCAQIGKNVHLSGGVGIGGVLEPLQANPTIIEDNCFIGARSEVVEGVIVEEGSVISMGVYLGQSTKIYDRETGEVHYGRVPAGSVVVSGNLPSKDGKYSLYCAVIVKKVDAKTRGKVGINELLRTID
>NZ_CP008886.1|WP_004858100.1|832535_832925_-|DUF3461-family-protein
MYDNLKSLGITNPDEIDRYSLRQEANNDILKIYFQKDKGEFFAKSVKFKYPRQRKTVVADGVGQGYKEVQEISPNLRYVIDELDQICQRDRTEVDLKRKILDDLRHLESVVTHKISEIEADLEKLTRNK
>NZ_CP008886.1|WP_004858098.1|831287_832445_+|CdaR-family-transcriptional-regulator
MAGWHLDTNMAQDIVARTMRIIDTNINVMDARGRIIGSGDRERIGELHEGALLVLSQGRVVDIDDAVARHLHGVRQGINLPLRLEGEIVGVIGLTGEPETLRKYGELVCMTAEMMLEQSRLMHLLAQDSRLREELVMNLIQAEENTPALTEWAQRLGIDLNQPRVVAMIEVDSGQLGVDSAMAELQQLQTALTTPDRNNLVAIVSLTEMVVLKPAFNAFGRWDAEDHRKRIDQLIARMKENGQLRFRVALGNFFTGPGSIARSWRTARTTMMVGKQRMPESRSYFYQDLMLPVLLDSLRGGWQANELARPLVRLKAMDNNGLLRRTLQAWFRHNVQPLATSKALFIHRNTLEYRLNRIAELTGLDLGSFDDRLLLYIALQLDEQR
>NZ_CP008886.1|WP_004858096.1|829657_831097_+|serine-endoprotease-DegP
MKKTTLAMSALALSLGLALSPLSASAAETSSSASSTQQMPSLAPMLEKVMPSVVSINVEGSTTVNTPRMPRNFQQFFGDNSPFCQDGSPFQSSPFCQGGGQGGGAPGDGGQQQKFMALGSGVIIDAAKGYVVTNNHVVDNATTIKVQLSDGRKFDAKVVGKDPRSDIALIQIQDPKNLTAIKLADSDALRVGDYTVAIGNPFGLGETVTSGIVSALGRSGLNVENYENFIQTDAAINRGNSGGALVNLNGELIGINTAILAPDGGNIGIGFAIPSNMVKNLTEQMVKYGQVKRGELGIMGTELNSELAKAMKVDAQRGAFVSQVMPGSAAAKAGIKAGDVITSLNGKPISSFAALRAQVGTMPIGSKVQLGLVRDGKAVNATVELQQSNQTQVDSSTIFNGIEGAEMSNKGQDKGVVVNNVKAGTPAAQIGLKKGDIIVGANQQPVKNIADLRKIFDAKPSVLALNIQRGDSTIYLLMQ
>NZ_CP008886.1|WP_048024042.1|828008_829523_+|dGTPase
MAKIDFRNKINWRRRYRSPQGVETEREILRIFESDRGRIINSPAIRRLQQKTQVFPLERNAAVRTRLTHSLEVQQVGRYIAKEILSRLKEQRLLEAYGLDELTGPFESVVEMACLMHDIGNPPFGHFGEAAINDWFRQRLAPDDAAGAPLAQDRCTVEALRLQEGADELNVLRSKVRQDLCWFEGNAQGIRLVHTLMRMNLTWAQVGCILKYTRPAWWRGELPSSHSYLMKKPGYYLAEEGYIARLRKELELAPYNRFPLTWIMEAADDISYCVADLEDAVEKRIFSVEQLYQLLHEAWGQHEKGSLFSQVVENAWDKSRANSLSRSTEDQFFMYLRVNTLNKLVPYAARRFIDNLPKIFAGDFNHALLEDDSDCSQLLELYKNVAIKHVFSHPDVEQLELQGYRVISGLLDIYEPLLKLSLEEFSLLVEKERVRSLPIASRLFQKLSTRHRLAYVEAVNKVSRDAEEFPVMEYYYRCRLIQDYISGMTDLYAWDEYRRLMAVE
>NZ_CP008886.1|WP_004858091.1|827225_827924_-|5'-methylthioadenosine/S-adenosylhomocysteine-nucleosidase
MKIGIIGAMEEEVTLLRDKIENRQTLTHGGSEIYTGQLNGTDVALLKSGIGKVAAAMGAALLLEICKPDVIINTGSAGGLASTLKVGDIVISDETRYHDADVTAFGYEYGQLPGCPAGFKADDKLIAAAQSCIEALNLHAVRGLIVSGDAFINGSVGLAKIRHNFPQAVAVEMEATAIAHVCHNFGVPFVVVRAISDVADQQSHLSFDEFLTVAAKQSTLMVEKLVQTLARG
>NZ_CP008886.1|WP_004858089.1|826432_827233_-|vitamin-B12-ABC-transporter-substrate-binding-protein-BtuF
MAKSLKRALAALLLLTPAWLFAAPRVITLSPSNTELAFAAGITPVGVSSHSDYPPQAAGIEQVASWQGMNLERIVALQPDLILAWRGGNAERQVNQLSALGIKVLWVNTATIEEIIATLRQLAQWSPQPEKARASAQRMQDDYDALKARYAHTPKKRVFLQFGSNPLFTSSRGSIQDQVLTLCGGDNIFASSPVPWPQVSREQVLARQPQAIVIAGDASRLPEVERYWHNQLKISLIAVDGDWFERASPRIILAAKQLCEALGQVK
>NZ_CP008886.1|WP_065905836.1|825666_826290_-|TRIC-cation-channel-family-protein
MLVYWLDIIGTAVFAISGVLLAGKLRMDPFGVLVLGVVTAVGGGTIRDMALANGPVFWVKDPTDLVVAMVTSMLTILLVRQPRRLPKWILPVLDAVGLAVFVGIGVNKAFLAHSGPLVAICMGVVTGVGGGIIRDVLAREIPMILRTEIYATACIVGGIVHATAYDTFHVSLQNSAMMGMFVTLMIRLAAIRWHLKLPTFALDDHGR
>NZ_CP008886.1|WP_004858085.1|825264_825609_+|iron-sulfur-cluster-insertion-protein-ErpA
MSDDVALPLEFTEAAAKKVKFLIADEDNPNLKLRVYITGGGCSGFQYGFTFDDQVNEGDMTIEKQGVGLVVDPMSLQYLVGGAVDYTEGLEGSRFIVTNPNAKSTCGCGSSFSV
>NZ_CP008886.1|WP_004858106.1|836761_837556_-|type-I-methionyl-aminopeptidase
MAISIKTSEDIEKMRVAGRLAAEVLEMIEPYVKPGVSTGELDRICNDYIVNEQKAISACLGYHGYPKSVCISINEVVCHGIPDDEKLLKDGDIVNIDVTVIKDDFHGDTSRMFIVGKPTILGERLCRITQESLYLALKMVKPGINLRAIGAAIQKFVEAEGFSVVREYCGHGIGRGFHEEPQVLHYDSPETNVVLKPGMTFTIEPMVNAGKKEIRSMKDGWTVKTKDRSLSAQYEHTIVVTENGCEILTLRKDDTIPAIISHDA
>NZ_CP008886.1|WP_004858107.1|837879_838605_+|30S-ribosomal-protein-S2
MATVSMRDMLKAGVHFGHQTRYWNPKMKPFIFGARNKVHIINLEKTVPMFNEALAELNKISARKGKILFVGTKRAASEAVKEAANSCDQFFVNHRWLGGMLTNWKTVRQSIKRLKDLETQSQDGTFEKLTKKEALMRTRELDKLENSLGGIKDMGGLPDALFVIDADHEHIAIKEANNLGIPVFAIVDTNSDPDGVDFVIPGNDDAIRAVSLYLGAVAATVREGRSQDLASQAEESFVEAE
>NZ_CP008886.1|WP_015585106.1|838722_839574_+|elongation-factor-Ts
MAEITASLVKELRERTGAGMMDCKKALTEANGDIELAIENMRKSGAIKAAKKAGNVAADGVIITKIDGTYGIILEVNCQTDFVAKDGGFQAFANKVLDAAVAGKITDVEVLKAQFEEERVALVAKIGENINIRRVASLEGDVLGSYQHGARIGVLVAAKGADQELVKQLAMHIAASKPEFVKPEDVSAEVVEKEYQVQLDIAMQSGKPKEIAEKMVEGRMKKFTGEVSLTGQPFVMDPSKSVAQLLKEHNADVTGFIRFEVGEGIEKVETDFAAEVAAMSKQS
>NZ_CP008886.1|WP_004858112.1|839721_840447_+|UMP-kinase
MATNAKPVYKRILLKLSGEALQGSEGFGIDASILDRMAQEIKELVELGIQVGVVIGGGNLFRGAGLAKAGMNRVVGDHMGMLATVMNGLAMRDSLHRAYVNARLMSAIPLNGVCDNYSWAEAISLLRNNRVVILSAGTGNPFFTTDSAACLRGIEIEADVVLKATKVDGVFTADPAKDPSATMYDQLTYSEVLDKELKVMDLAAFTLARDHKLPIRVFNMNKPGALRRVVMGEKEGTLITE
>NZ_CP008886.1|WP_004858114.1|840597_841155_+|ribosome-recycling-factor
MISDIRKDAEVRMEKCVEAFKTQISKIRTGRASPSLLDGIVVEYYGTPTPLRQLASVTVEDSRTLKINVFDRSMSPAVEKAIMASDLGLNPSSAGTDIRVPLPPLTEERRKDLTKIVRAEAEQARVSVRNVRRDANDKVKALLKDKEISEDDDRRSQDDVQKMTDAAIKKVDAALADKEAELMQF
>NZ_CP008886.1|WP_065905838.1|841394_842597_+|1-deoxy-D-xylulose-5-phosphate-reductoisomerase
MKQLTVLGSTGSIGCSTLDVVRHNPDRFSIAALVAGKNVDRMVEQCLEFSPRYAVMDDVQGADALRIRLRENGSRTDVLSGQQAAAEVAALDDVDQVMAAIVGAAGLVPTLAAIRAGKTVLLANKESLVTCGRLFMDAVQQYGAHLLPVDSEHNAIFQSMPVTVQHNLGYADLTQNGVSSILLTGSGGPFRETAIAELAAMTPDQACRHPNWSMGRKISVDSATMMNKGLEYIEARWLFNASARQMEVLIHPQSVIHSMVRYLDGSVIAQLGEPDMRTPIAHTMGWPDRLNSGVPALDFCQLSQLSFSAPDYGRYPCLKLAMDAFDQGQAATTALNAANEISVAAFLAEEIRFTDIAGVNLAVLDQLALDEPQSIDEVLVIDAQARVVAQKQIKHLTTRG
>NZ_CP008886.1|WP_004858119.1|842846_843605_+|(2E,6E)-farnesyl-diphosphate-specific-ditrans,polycis-undecaprenyl-diphosphate-synthase
MLSANHTVSEISPAHGCRHVAIIMDGNGRWAKQQGKIRAFGHKAGAKSVRRAVSFAANNGIEALTLYAFSSENWNRPEQEVSALMELFVWALDSEVKSLHRHNVRLRIIGETTRFNARLQERIRKAEALTENNTGLTLNIAANYGGRWDIIQGVRNLAEQVQNGLLRPEQITEDMLSQQVCMHELAPVDLVIRTGGEHRISNFLIWQIAYAELYFTDVLWPDFAEQDFEGALHAFVNRERRFGGTEPGGNHA
>NZ_CP008886.1|WP_032716598.1|843617_844475_+|phosphatidate-cytidylyltransferase
MLKYRLISAFVLIPVVIAALFLLPPAGFAIVTLVVCMLAAWEWGQFSGFTSTSQRIWLALLCGLLLALMLFLMPEYHYDVHQPLVEGSLWASFGWWIVALLLVLSYPASAAFWRNSKALRLIFGILTIVPFFWGMLALRAWHYADNHYSGALWLLYVMILVWGADSGAYMFGKMFGKHKLAPKVSPGKTWQGFFGGLVTAAIISWAYGQWANLDVTPTVLLVCSVVAALASVLGDLTESMFKREAGIKDSGHLIPGHGGILDRIDSLTAAVPVFACLLLLVFRTI
>NZ_CP008886.1|WP_015585103.1|844486_845839_+|sigma-E-protease-regulator-RseP
MLSVLWNLAAFIIALGVLITVHEFGHFWVARRCGVRVERFSIGFGKALWRRFDKQGTEFVIALIPLGGYVKMLDERVEPVAPEMRHYAFNNKTVGQRAAIIAAGPVANFIFAIFAYWLVFIIGVPGIRPVVGEIVPDSIAAHAQIAKGTELKAIDGIETPDWDAVRMALVSKIGDEQTIVTVAPFGSSQRQDKILDLRHWAFEPDKQDPVTSLGIQPRSAQIDTVLAEVQSGSAAQKAGLQAGDRIVKVDGQPLTQWMTFVNLVRDNPGKALILDIERQGSPLSVTLTPDSRSAKGKAEGFAGVVPKVIPLPDEYKTVRQYGPFAAIAEATDKTWQLMSLTVRMLGKLITGDVKLNNLSGPISIAQGAGMSAEFGLIYYLMFLALISVNLGIINLFPLPVLDGGHLLFLAIEKLKGGPVSERVQDFSYRIGSILLVLLMGLALFNDFSRL
>NZ_CP008886.1|WP_004858125.1|845870_848300_+|outer-membrane-protein-assembly-factor-BamA
MAMKKLLIASLLFSSATVYGAEGFVVKDIHFEGLQRVAVGAALLSMPVRPGDTVTDDDISNTIRALFATGNFEDVRVLRDGDTLLVQVKERPTIASITFSGNKSVKDDMLKQNLEASGVRVGESLDRTTLADIEKGLEDFYYSVGKYSASVKAVVTPLPRNRVDLKLVFQEGVSAKIQQINIVGNHAFSTDELISTFQLRDEVPWWNVVGDRKYQKQKLAGDLETLRSYYLDRGYARFNIDSTQVSLTPDKKGIYITVNITEGEQYKLSGVQVTGDLAGHSAEIEALTKVEPGELYNGAKVTKMENDIKKLLGRYGYAYPRVQSQPEINDSDKTVKLHVNVDAGNRYYVRKIRFEGNDTSKDSVLRREMRQMEGAWLGSDLVDQGKDRLNRLGYFETVDTDTQRVPGSPDQVDVVYKVKERNTGSFNFGIGYGTESGVSFQAGVQQDNWLGTGYSVGINGTKNDYQTYTELSVTNPYFTVDGVSLGGRIFYNDFDANDADLSDYTNKSYGTDVTLGFPVNEYNTLRAGLGYVHNSLSNMQPQVSMWRYLNSMGQYPENTDDKNSFSANDFTFNYGWTYNKLDRGFFPTEGSRVNLNGKVTIPGSDNEYYKATLDTATYVPIDNDHKWVVLGRTRFGYGDGIGSKEMPFYENFYAGGSSTVRGFQSNTIGPKAVYFPASNRHDGDDNYDSNCKSTESAPCKSDDAVGGNAMAVASLELITPTPFISDKYANSVRTSFFWDMGTVWDTHWDSSAYAGYPDYGDPSNIRMSAGIAVQWMSPLGPLVFSYAQPFKKYEGDKAEQFQFNIGKTW

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Crispr_ID: NZ_CP008886_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP008886_3

1284583-1284721

Orphan

Consensus_repeat	Method
GAGTTTCCCGGAGAGCGGCGCCAGCGCCTTATCCGGGCTACCCGACCGCACAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP008886_3

>merge|NZ_CP008886|3|1284583-1284721|CRISPRCasFinder
GAGTTTCCCGGAGAGCGGCGCCAGCGCCTTATCCGGGCTACCCGACCGCACAACCCCGTAGCCCCGGTAAGCGCAGCGCCACCGGGGAGTTTCCCGGATAGCGGCGCCAGCGCCTTATCCGGGCTACCCGACCGCACAA

>NZ_CP008886|3|3|1284583-1284721|CRISPRCasFinder
GAGTTTCCCGGAGAGCGGCGCCAGCGCCTTATCCGGGCTACCCGACCGCACAA	CCCCGTAGCCCCGGTAAGCGCAGCGCCACCGGG
GAGTTTCCCGGATAGCGGCGCCAGCGCCTTATCCGGGCTACCCGACCGCACAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP008886.1\|WP_004859289.1\|1294177_1294771_-\|transcriptional-regulator-BetI	unknown	unknown	gnl\|CDD\|179115
NZ_CP008886.1\|WP_065905978.1\|1286297_1287131_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224094
NZ_CP008886.1\|WP_004859293.1\|1294899_1296933_+\|choline-transporter	unknown	unknown	gnl\|CDD\|236635
NZ_CP008886.1\|WP_004859266.1\|1285468_1286305_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|223521
NZ_CP008886.1\|WP_064367794.1\|1284777_1285482_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224049
NZ_CP008886.1\|WP_065905982.1\|1290026_1290722_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|224584
NZ_CP008886.1\|WP_004859271.1\|1287130_1288144_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223674
NZ_CP008886.1\|WP_065905984.1\|1292693_1294166_-\|betaine-aldehyde-dehydrogenase	unknown	unknown	gnl\|CDD\|183918
NZ_CP008886.1\|WP_004859252.1\|1280773_1281535_+\|amino-acid-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224051
NZ_CP008886.1\|WP_065905980.1\|1288245_1289814_-\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|173877
NZ_CP008886.1\|WP_065905976.1\|1282206_1282971_-\|SDR-family-NAD(P)-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|187604
NZ_CP008886.1\|WP_048024636.1\|1290996_1292679_-\|choline-dehydrogenase	unknown	unknown	gnl\|CDD\|235000
NZ_CP008886.1\|WP_004859243.1\|1278559_1279411_+\|transporter-substrate-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|270343
NZ_CP008886.1\|WP_004859233.1\|1272959_1273970_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|223521
NZ_CP008886.1\|WP_065905974.1\|1275174_1276443_+\|Zn-dependent-hydrolase	unknown	unknown	gnl\|CDD\|237250
NZ_CP008886.1\|WP_004859249.1\|1280115_1280781_+\|amino-acid-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223836
NZ_CP008886.1\|WP_015584941.1\|1279459_1280101_+\|amino-acid-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223836
NZ_CP008886.1\|WP_015584943.1\|1276860_1278327_-\|PLP-dependent-aminotransferase-family-protein	unknown	unknown	gnl\|CDD\|224089
NZ_CP008886.1\|WP_065905972.1\|1274000_1275185_+\|amidase	unknown	unknown	gnl\|CDD\|181375
NZ_CP008886.1\|WP_004859258.1\|1283151_1284489_+\|aspartate-aminotransferase-family-protein	unknown	unknown	gnl\|CDD\|235687

Protein	Function_ID	Function_description	E-value
NZ_CP008886.1\|WP_004859289.1\|1294177_1294771_-\|transcriptional-regulator-BetI	gnl\|CDD\|179115	PRK00767, PRK00767, transcriptional regulator BetI; Validated.	2.91342e-106
NZ_CP008886.1\|WP_065905978.1\|1286297_1287131_-\|ABC-transporter-permease	gnl\|CDD\|224094	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism].	2.10564e-94
NZ_CP008886.1\|WP_004859293.1\|1294899_1296933_+\|choline-transporter	gnl\|CDD\|236635	PRK09928, PRK09928, choline transport protein BetT; Provisional.	0
NZ_CP008886.1\|WP_004859266.1\|1285468_1286305_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|223521	COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism].	1.23308e-105
NZ_CP008886.1\|WP_064367794.1\|1284777_1285482_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224049	COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism].	1.25052e-102
NZ_CP008886.1\|WP_065905982.1\|1290026_1290722_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|224584	COG1670, RimL, Acetyltransferases, including N-acetylases of ribosomal proteins [Translation, ribosomal structure and biogenesis].	4.33534e-25
NZ_CP008886.1\|WP_004859271.1\|1287130_1288144_-\|ABC-transporter-permease	gnl\|CDD\|223674	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism].	3.18429e-105
NZ_CP008886.1\|WP_065905984.1\|1292693_1294166_-\|betaine-aldehyde-dehydrogenase	gnl\|CDD\|183918	PRK13252, PRK13252, betaine aldehyde dehydrogenase; Provisional.	0
NZ_CP008886.1\|WP_004859252.1\|1280773_1281535_+\|amino-acid-ABC-transporter-ATP-binding-protein	gnl\|CDD\|224051	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism].	4.89905e-139
NZ_CP008886.1\|WP_065905980.1\|1288245_1289814_-\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|173877	cd08512, PBP2_NikA_DppA_OppA_like_7, The substrate-binding component of an uncharacterized ABC-type nickel/dipeptide/oligopeptide-like import system contains the type 2 periplasmic binding fold. This CD represents the substrate-binding domain of an uncharacterized ATP-binding cassette (ABC) type nickel/dipeptide/oligopeptide-like transporter. The oligopeptide-binding protein OppA and the dipeptide-binding protein DppA show significant sequence similarity to NikA, the initial nickel receptor. The DppA binds dipeptides and some tripeptides and is involved in chemotaxis toward dipeptides, whereas the OppA binds peptides of a wide range of lengths (2-35 amino acid residues) and plays a role in recycling of cell wall peptides, which precludes any involvement in chemotaxis. Most of other periplasmic binding proteins are comprised of only two globular subdomains corresponding to domains I and III of the dipeptide/oligopeptide binding proteins. The structural topology of these domains is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. Besides transport proteins, the PBP2 superfamily includes the ligand-binding domains from ionotropic glutamate receptors, LysR-type transcriptional regulators, and unorthodox sensor proteins involved in signal transduction.	0
NZ_CP008886.1\|WP_065905976.1\|1282206_1282971_-\|SDR-family-NAD(P)-dependent-oxidoreductase	gnl\|CDD\|187604	cd05346, SDR_c5, classical (c) SDR, subgroup 5. These proteins are members of the classical SDR family, with a canonical active site tetrad and a typical Gly-rich NAD-binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.	2.40248e-123
NZ_CP008886.1\|WP_048024636.1\|1290996_1292679_-\|choline-dehydrogenase	gnl\|CDD\|235000	PRK02106, PRK02106, choline dehydrogenase; Validated.	0
NZ_CP008886.1\|WP_004859243.1\|1278559_1279411_+\|transporter-substrate-binding-domain-containing-protein	gnl\|CDD\|270343	cd13625, PBP2_AA_binding_like_1, Substrate-binding domain of putative amino acid-binding protein; the type 2 periplasmic-binding protein fold. This putative amino acid-binding protein belongs to the type 2 periplasmic-binding fold protein (PBP2) superfamily, whose members are involved in chemotaxis and uptake of nutrients and other small molecules from the extracellular space as a primary receptor. PBP2 typically comprises of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two receptor cytoplasmically-located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	1.0611e-111
NZ_CP008886.1\|WP_004859233.1\|1272959_1273970_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|223521	COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism].	1.74712e-157
NZ_CP008886.1\|WP_065905974.1\|1275174_1276443_+\|Zn-dependent-hydrolase	gnl\|CDD\|237250	PRK12893, PRK12893, Zn-dependent hydrolase.	0
NZ_CP008886.1\|WP_004859249.1\|1280115_1280781_+\|amino-acid-ABC-transporter-permease	gnl\|CDD\|223836	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism].	2.62035e-42
NZ_CP008886.1\|WP_015584941.1\|1279459_1280101_+\|amino-acid-ABC-transporter-permease	gnl\|CDD\|223836	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism].	1.94662e-54
NZ_CP008886.1\|WP_015584943.1\|1276860_1278327_-\|PLP-dependent-aminotransferase-family-protein	gnl\|CDD\|224089	COG1167, ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism].	7.85755e-107
NZ_CP008886.1\|WP_065905972.1\|1274000_1275185_+\|amidase	gnl\|CDD\|181375	PRK08310, PRK08310, amidase; Provisional.	3.811e-170
NZ_CP008886.1\|WP_004859258.1\|1283151_1284489_+\|aspartate-aminotransferase-family-protein	gnl\|CDD\|235687	PRK06062, PRK06062, hypothetical protein; Provisional.	0

>NZ_CP008886.1|WP_004859258.1|1283151_1284489_+|aspartate-aminotransferase-family-protein
MKLAIQNDVTVSNDDVRQLDRAYVFHSWSVQGNINPLVIAGARGCELWDYEGKTYLDFSSQLVNVNIGYQHPRVLAAMKAQLEELVTIAPATANLARGEAAKRIVELAPEGFSKVFFTNAGADANENAIRMARLYTGRDKVLSAYRSYHGNTGSAIAATGDWRRVPNEYSRGHVHFFNPYLYRSEFNAVTEEEECQRALAHLRRIIECEGPGAIAAILLESIPGTAGILVPPDGYMQGVRALADEFGIVLILDEVMAGFGRTGSWFAFEQDGVVPDLVTFAKGVNAGYVPAGGVLISDPIARYFDDHFFAGGLTYSGHPLAMAAIVATIDAMKEENIVENAAQMGNHVLRPGLEALAEKHAIIGHVRGRGLFQALELVSDREAKTPLTAADMAAIKGALTEAGLLAFVVENRIHVVPPCTISAEQIAKGLAIFDSVFARFATLAK
>NZ_CP008886.1|WP_065905976.1|1282206_1282971_-|SDR-family-NAD(P)-dependent-oxidoreductase
MTTNNIVFITGATSGFGEAAAQVFAEAGWSLVLSGRRLARLQKLYDRLSLLVPVHIIELDVRDSEAVAAAVAELPAAFADIKTLINNAGLALAPQPAQKVDLQDWKTMIDTNVTGLVNITHALLPTLIQHGAGASIINVGSIAGQWPYPGSHVYGASKAFVKQFSYNLRCDLLGTGVRVTDLAPGIAETEFTLVRTKGDQAASDNLYRGTTPLSAQDIAGQMFYIATLPDHMNINRVEVMPVRQAWQPFAIDRD
>NZ_CP008886.1|WP_004859252.1|1280773_1281535_+|amino-acid-ABC-transporter-ATP-binding-protein
MPDTTAVSIKNVSKQFDNIEVLRDINLTVEKGSVVSILGSSGSGKSTLLRCMNWLEQPDRGEIHIGGQRLGIDEQNGKAMSHRQLSKIRERVGMVFQSFNLWPHLTVQQNVSEALLHVKGMKRDEASAIAIQQLEKVGMAHKADAWPITLSGGQKQRVAIARSLAMSPEVILFDEPTSALDPELVNEVLGVMKALAAEGYTMVVVTHEMDFARQVSDEVVFLEKGLLIEKAPPEKFFTNPDSERVRQFLQSRR
>NZ_CP008886.1|WP_004859249.1|1280115_1280781_+|amino-acid-ABC-transporter-permease
MNQWAIIWSARDSFIAGLIATLELFILAAVVGLAIGIVLCYLTEYQKRWLNRVIIGFVSLMRAIPFLILAYLLYYGLPEVGISMDAWSAGLVALMIYHGAYFFEILRSQRRVFSAGYIEAAVAQGFSRYQIYRRIILPNIVSSALPLLGNQLIICLKDTAFLSIITVQEITAAANSVQATWFIPFNAFIVAIALYWAISILLELLIKRLSALGARRGMSHA
>NZ_CP008886.1|WP_015584941.1|1279459_1280101_+|amino-acid-ABC-transporter-permease
MDVISWQLLIEGAWTTLWISAIAIAFGVVIGLLIALVRMLRLPIIDQLLVVYISLARATPLVTLVLFLFLSLPTVGINLDKNVAAIVALTLNTSAFNAEIWRNAFRTFPREQREAAESVGMRRWTYFRYIMLPQMWIESLPALVNEMSFLIKGSPAIAVIGVVDLTRVTNRISSVTYEPLSPILAAGLLYVVIIGMLLKLQGLAERKAKRLAR
>NZ_CP008886.1|WP_004859243.1|1278559_1279411_+|transporter-substrate-binding-domain-containing-protein
MNKSLGSMCLGAVMALAFSYHAAAADLPEIEKSGTLKVATEDDYAPFNFMSNGQADGFNKDMLEELRKYAKFHVDQSILPWTGLLAAVSTGQYDMALTGAVITDDRLKVFDFTPPWASAQHYFVKRAGDNSLNTIADLSGKKVGLQAGSALLARLPELKAMLEKTGGKLGPVVEYPSYPEAYADLANKRLDYVINVVISVNDLAKAKPKVFAKGLAVSGPGYMAWPIPKNSPQLLAYMTKFINHMRETGKLAELQKKWFGETYDNLPTEAITSPEQFHKLAGL
>NZ_CP008886.1|WP_015584943.1|1276860_1278327_-|PLP-dependent-aminotransferase-family-protein
MIRHLLHVEFDQRRGLQEQVRETLVNAILSGIFSADTPLPSCRQLASQLRVSRNTTALVFESLVSEGYLISRPRSGYYLHPDYQHSAATVAVQDAPDDERAAPRWGARLQITPSQQESILKPAGWMNYRYPFIYGQPDTRQFPLTTWRSAANWLHGGVRDPAWVVDHIDQDVPMLIEQIRTRVLPKRGIVAAADEILITLGSQNALYLLTRLLMSSTTRVGVENPCFREAINTFLLADADIVPHPVDEEGIVLDDAPCDYYYVTPGHQVPTGVAMSQARRGQLLEHAARHDAVIVEDDYDSESNFMLNPLPALKASDRSGRVIYVSSLSKALSPGLRLGFMVADPDLIDEARALRRLIYRHPPTNIQYQMAHFLAQGHYETHLRRYHFDSAQRWERLNNALHRYLPECRIIPGSEHANAFWLATPKQINTQQLTWRAAHAGVLIEPGARHFLNANPPENFFRMGFHAINPDAIAPGVEVLCHQLAQLG
>NZ_CP008886.1|WP_065905974.1|1275174_1276443_+|Zn-dependent-hydrolase
MSSEVLFTPVAGATGWRINGERLWDSLMALAEIGATPKGGCCRLTLTDLDRQGRDVVIGWAQEAGMSVTVDKIGNVFMRREGRNPLLPPIVSGSHIDTQPTGGKFDGNYGVLAALEVVRTLNDLDIETEAPIEVVFWTNEEGSRFVPVMMGSGVFAGVFPLETIYAAQDAQGKTVGEELARIGYVGSQTPGDHPIGAYFEAHIEQGPILEDEEKIIGVVQGVLGIRWYDCVVTGQASHAGPTPMRLRQDALQVATRIMQEVVAIAGRSEEGRGTVGMVQVYPNSRNVVPGEVTFSIDMRNISDAAVDEMDRQLRAFITRMQQESGLAVTLQEVSHYPAAPFHPDCQQAIADAAARLGYPAREIVSGAGHDAVYMSYLAPTGMIFIPCKDGISHNEIEYASPGHVTAGANVLLQVMLQYAQVA
>NZ_CP008886.1|WP_065905972.1|1274000_1275185_+|amidase
MQDDNHAFMPYPPQPVPNALSGPLSGMTFAVKDLFDVAGYPTGGGNPHLLALSGIKRRTAPVVQRLLDNGARFIGKTHTSELAYSMSGHNVHYGTPRNGAAPNHIPGGSSSGSASAVSNGVCDFALGTDTGGSVRTPASYCGLFGLRPTHGRISLDGCQPLCATMDTCGFFAQTPEVFRAVADCLLDAKPPAIAGVALACHDALFSRLPLRSQQALLPVRQRLERVFGTFTPLNASLPDIDEIYLAFRQIQGFEAWQAQGETIERYGLQLGPDVRERFLWGKAVTPAQYEAACQRREHFTRWWDALLGDAILVLPTVPDGAPLLTAQAEEIETTRRLSHDLLLISVMTRRPQVTLPVAQAGGLPLGISFLGPRGSDRLLVELAVAFAQGDKDEQ
>NZ_CP008886.1|WP_004859233.1|1272959_1273970_+|ABC-transporter-ATP-binding-protein
MSHEAFVHIRDLRVEFRRDGQTVNAVNGVSFDVHKGEVMALIGESGSGKSVTLRALMRLHPPTSSVLSGTLRVGDEEVLKMSASRLRAYRGARCAMIFQEPLLAFDPVYTVGQQIVEGLRRHEGLSRQAARERALEALRQVRIPSPERRLDAYPHEMSGGMRQRAMIALALSCNPQLLLADEPTTALDATVQIQILILLREQQKQRELAIIFVTHDIGAAVEIADRVAVMYAGRIVEEASMTDILSRPRHPYTQVLLGSRPKDGLKKGDALHCIPGSPPDLSRLPPGCAFADRCPHARPVCRQTQPVTEQAGQRHVVSCHRWRELTSGIEKPALYA
>NZ_CP008886.1|WP_064367794.1|1284777_1285482_-|ABC-transporter-ATP-binding-protein
MAVVNLDALQVIFAEKTAVSAASFSVEAGETFSLIGASGCGKSTILRVLAGLQREWRGGVQLFGKAIAPGVRFQGELRRNVQMVFQDPYASLHPNHTLWRTLAEPLKIHGLDAIRQRVDTALEQVGLPADAARRYPHQLSGGQRQRVAIARALLLRPQILLLDEPTSALDMSVQAEILNLLNRLKQEHGMTYLLVSHDADVIAHMSDRAAFMAEGVIQRFFDREALVKGEHRMA
>NZ_CP008886.1|WP_004859266.1|1285468_1286305_-|ABC-transporter-ATP-binding-protein
MTDTRLTVQGLSIDYPSARVVNNVSFTLGNERLALVGESGSGKSMTARALMGLVRRPGVVSAETLNVLGHDLLTLNDRRWRALRGNDIAMVLQDPRYALNPVQTIQAQLEEALTLHQRLSRRARQEAVKAAVAAVGLDLPVLSRYPGELSGGMGQRVMIAIALLNNPKVLIADEPTSALDSRLRNQILELLVEQCQQRQMAMLLISHDLPLVAQHCHRVLVMYQGAQVDEMPARELPQATHPYTRTLWTCRPDASTYGQMLPTLDRTLDFTEAAHGSR
>NZ_CP008886.1|WP_065905978.1|1286297_1287131_-|ABC-transporter-permease
MPAYLFLRRLRRSPAAFFGLIVIALLLLVALFAPWLAPLDPNWQDAAARLQSPDARHWLGTDSYGRDLLSRLIYGARPALGLVALVTLITLPTGLLVGILSGYYGGWLERILMRFTDVVMSMPRLILAFAFVAMLGPGLVNGALALALTTWPAYARQARSEIQRLRHSDYLAAAEMMGIRGWRLLTGHILPLCLPSAIVRLALDLAGIILAAAGLGFLGLGARPPMAEWGAMIADGMQVIFDQWWIAAAPGAVILIASLAFNLLGDGLRDVLEPQHD
>NZ_CP008886.1|WP_004859271.1|1287130_1288144_-|ABC-transporter-permease
MPHLSTRVLQGLLTLLLTLFGLLLVTFALSAFSPVDRVLQIVGDHASQSTYDQVRHQLGLDRPLPVQFWHYLVNLAHGDLGTASSTGQPVLHDLLATFPATLELATLALIVGALFGVIAGVLCARYAGSPWDLAVRTLTLIGNSVPIFWLGLLMLALFYAKLQWTPGPGRLDDIYQYTVEPRTGFVLIDTWLSGDKEAFKNAIGHLLLPVLLLGYYSLASITRLTRSACLSEMNKEYILLARAKGASEMTILLRHVLPNIRGTLLTVIALAWTSMLEGAVLTETVFSWPGIGRYLTTALFAGDTTAIMGGTLLIGASFVFINNLTDLLVRLTDPRVR
>NZ_CP008886.1|WP_065905980.1|1288245_1289814_-|ABC-transporter-substrate-binding-protein
MTKKLLSLLVLTALSAAVHAATPPSTLVVAQGLDDIVSLDPAEANELSSIQTVPSLYQRLVQPDRDNPEKITPILAASWQADPAAKTLTIKLKPDAKFASGNPLRPEDIIFSYTRAVTLNKSPAFILNVLGWQPDNIASQLKKVDDHTLQLHWTADVSPAVALNILSTPIASIVDEKLVAPNVKDNDFGNSWLKMHSAGSGAFKMRVYQPHQAIVLEANNSSPTGAPKLKSIIIKNVPDPASRRLLIQQGDADIARDLGADQIAALQGKPGVNVLSIPSAEQNYLAFNTGNSDNPLLKNPALWEAARWLVDYDGITKDLLKGQYFVHQSFLPVGLPGALDNNPFKFDPEKAKAILAKAGIKDAHFTLDVENKPPFITIAQSMQASFAQGGVKIDLLPAAGSQVYARVRAKQHQAAIRLWIPDYFDAHSNASAFAWNDGKSSTVAGLNGWQIPQLNKETQAAVAEADPAKRLDLYKKMQEELQRSSPYVFVDQGKTQIVVRDNVKGYQQGLNADMVWYDNVTK
>NZ_CP008886.1|WP_065905982.1|1290026_1290722_+|GNAT-family-N-acetyltransferase
MPEINQYGQVVNDVVADWQGARILKRTPLSGRFCRLEPLEVQRHAADLFAAYALGDESDWTWLASTCPASVEATTHWVAGKVNDDALVPFAVIDLQTEQAVGLVSYMAIDRAMGTVEIGHVTWSRKMKNTPLGTEAVWLLLKNAFGQGYRRLEWKCDSMNIASRRAAERLGFTWEGCLRQKMVRKGRTRDSDQLSIIDSEWAARDAALRAWLAAENFDGEGRQLKRLEDFR
>NZ_CP008886.1|WP_048024636.1|1290996_1292679_-|choline-dehydrogenase
MQFDYIIIGAGSAGNVLATRLTEDPHTTVLLLEAGGPDYRFDFRTQMPAALAFPLQGRRYNWAYETEPEPHMNNRRMECGRGKGLGGSSLINGMCYIRGNAMDLDNWATAPGLEQWSYLDCLPYYRKAETRDIGANDYHGGDGPVSVTTPKQNNNPLFHAMVEAGVQAGYPRTDDLNGYQQEGFGPMDRTVTPQGRRASTARGYLDQARARPNLTIRTHALTDHIIFAGKRAVGVEWLEGDSTAPSKATASKEVLLCAGAIASPQILQRSGVGDPELLRQFDIPLVHALPGVGENLQDHLEMYLQYECKEPVSLYPALQWWNQPKIGAEWLFGGTGIGASNQFEAGGFIRSREAFAWPNIQYHFLPVAINYNGSNAVKEHGFQCHVGSMRSPSRGHVRLKSRDPHEHPAILFNYMSSEQDWQEFRDAIRITRDIMNQPALDKYRGREISPGLACQSDAELDEFVRNHAETAFHPCGTCKMGYDEMAVVDGEGRVHGLEGLRVVDASIMPQIITGNLNATTIMIGEKIADAIRGRAPLPRSTARYYVANGAPVRRQAAVEG
>NZ_CP008886.1|WP_065905984.1|1292693_1294166_-|betaine-aldehyde-dehydrogenase
MSRMAEQQLYIHGGYVPATSGKTFETLNPANGEVLATVQAAGRDDVDRAVKSAQQGQKIWAAMSAMARSRILRKAVDILRERNDELARLETLDTGKPLSETAHVDIVTGADVLEYYAGLIPALEGSQIPLRDSSFIYTRREPLGVVAGIGAWNYPIQIALWKSAPALAAGNAMIFKPSEVTPLTALKLAEIYREAGLPDGVFNVLPGIGAETGQYLTEHPDIAKISFTGGVASGKKVMANSAASSLKEVTMELGGKSPLIVCDDADLDLAADIAMMANFYSSGQVCTNGTRVFIPTRAKAAFEEKILARVARIRPGDPFEETTNFGPLVSFPHRENVLRYIASGRQEGARLLCGGGVLQGDDFASGAWVAPTVFSDCRDDMTIVREEIFGPVMSILTYDDEAEVIRRANATEYGLAAGVVTANLNRAHRIIHQLEAGICWINSWGESPAEMPVGGYKHSGIGRENGVMTLQSYTQVKSIQVEMGQFQSIF
>NZ_CP008886.1|WP_004859289.1|1294177_1294771_-|transcriptional-regulator-BetI
MPKLGMQPIRQRQLIDATLEAINAVGMHDATIAQIARRAGVSTGIISHYFKDKNGLLEATMRDITGQLRLAVLSRLHALPGASAERRLRAIVAGNFDDSQISSAAMKAWLAFWASSMHQPMLYRLQQVCSRRLLSNIVYEFQRELPRQQAQEAGYGLAALIDGLWLRAALSGKPLDKARAETLADHFISQYLPPTSQ
>NZ_CP008886.1|WP_004859293.1|1294899_1296933_+|choline-transporter
MTDLSPSREKDKINPVVFYTSAGLILLFSLMTIFFSDFSAAWIGRTLNWVSTTFGWYYLLAATLYIVFVVCIACSRFGSVKLGPEHSKPEFSMLSWAAMLFAAGIGIDLMFFSVAEPVTQYMQPPEGAGQTMEAARQSMVWTLFHYGLTGWSMYALMGMALGYFSYRYNLPLTIRSALYPIFGKKIDGPIGHSVDIAAVVGTIFGIATTLGIGVVQLNYGLNVLFDIPDSLGAKAALIVLSVIIATISVTSGVDKGIRILSELNVVLALGLILFILFMGDTEFLMNALVLNVGDYVNRFMGMTLNSFAFDRPVEWMNNWTLFFWAWWVAWSPFVGLFLARISRGRTIRQFVLGTLIIPFTFTLLWLSVFGNSALYEIIHGNVAFAEEAMAHPERGFYNLLAQYPAFTFSASVATITGLLFYVTSADSGALVLGNFTSKLKDINSDAPNWLRIFWSVAIGLLTIGMLMTNGISALQNTTVIMGLPFSFVIFFVMAGLYKSLKVEDYRRESASRDTAPRPLGVQDRLSWKKRLSRLMNYPGTRYTRQMMETVCYPAMEEVAQELKLRGAYVDLKSLPPEEGDNLGHLDLLVHMGDEQNFVYQIWPQQYSIPGFTYRARSGKSTYYRLETFLLEGSQGNDLMDYSKEQVITDILDQYERHLNFIHLHREAPGNSVMFPGM

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Crispr_ID: NZ_CP008886_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP008886_4

4114519-4114636

Orphan

Consensus_repeat	Method
AGCACACCCGCTGTGCGCTTTTGTGGTCATACCGCTCG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP008886_4

>merge|NZ_CP008886|4|4114519-4114636|CRISPRCasFinder
AGCACACCCGCTGTGCGCTTTTGTGGTCATACCGCTCGCCCCTCATCCCGTAGGCCCGCGCAAGCGCAGCGCCGCCGGGTAGCACACCCGCTATGCGCTTTTGTGGTCATACCGCTCG

>NZ_CP008886|4|4|4114519-4114636|CRISPRCasFinder
AGCACACCCGCTGTGCGCTTTTGTGGTCATACCGCTCG	CCCCTCATCCCGTAGGCCCGCGCAAGCGCAGCGCCGCCGGGT
AGCACACCCGCTATGCGCTTTTGTGGTCATACCGCTCG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP008886.1\|WP_065906992.1\|4110053_4111598_-\|nitric-oxide-reductase-transcriptional-regulator-NorR	unknown	unknown	gnl\|CDD\|235331
NZ_CP008886.1\|WP_065906991.1\|4106704_4107067_+\|PTS-glucitol/sorbitol-transporter-subunit-IIA	unknown	unknown	gnl\|CDD\|182419
NZ_CP008886.1\|WP_065906993.1\|4115750_4117985_-\|carbamoyltransferase-HypF	unknown	unknown	gnl\|CDD\|223146
NZ_CP008886.1\|WP_004866860.1\|4113230_4114364_+\|NADH:flavorubredoxin-reductase-NorW	unknown	unknown	gnl\|CDD\|179902
NZ_CP008886.1\|WP_065906995.1\|4123491_4123962_-\|hydrogenase-maturation-peptidase-HycI	unknown	unknown	gnl\|CDD\|236925
NZ_CP008886.1\|WP_015585878.1\|4118672_4119686_-\|LacI-family-DNA-binding-transcriptional-regulator	unknown	unknown	gnl\|CDD\|380494
NZ_CP008886.1\|WP_044349640.1\|4111785_4113234_+\|anaerobic-nitric-oxide-reductase-flavorubredoxin	unknown	unknown	gnl\|CDD\|235475
NZ_CP008886.1\|WP_015585884.1\|4107928_4108288_+\|transcriptional-regulator-GutM	unknown	unknown	gnl\|CDD\|182322
NZ_CP008886.1\|WP_004866849.1\|4107084_4107864_+\|sorbitol-6-phosphate-dehydrogenase	unknown	unknown	gnl\|CDD\|183489
NZ_CP008886.1\|WP_004866853.1\|4108359_4109133_+\|DNA-binding-transcriptional-repressor	unknown	unknown	gnl\|CDD\|182457
NZ_CP008886.1\|WP_004866877.1\|4124361_4125129_-\|NADH-quinone-oxidoreductase-subunit-B-family-protein	unknown	unknown	gnl\|CDD\|225799
NZ_CP008886.1\|WP_004866862.1\|4114707_4115754_-\|HoxN/HupN/NixA-family-nickel/cobalt-transporter	unknown	unknown	gnl\|CDD\|225911
NZ_CP008886.1\|WP_015585883.1\|4109125_4110091_+\|arabinose-5-phosphate-isomerase-GutQ	unknown	unknown	gnl\|CDD\|183186
NZ_CP008886.1\|WP_004866872.1\|4121423_4122848_+\|6-phospho-beta-glucosidase	unknown	unknown	gnl\|CDD\|182112
NZ_CP008886.1\|WP_015585877.1\|4123954_4124365_-\|HycH-family-protein	unknown	unknown	gnl\|CDD\|185042
NZ_CP008886.1\|WP_065906997.1\|4125128_4125671_-\|4Fe-4S-dicluster-domain-containing-protein	unknown	unknown	gnl\|CDD\|183492
NZ_CP008886.1\|WP_004866866.1\|4117997_4118525_-\|electron-transport-protein-HydN	unknown	unknown	gnl\|CDD\|182382
NZ_CP008886.1\|WP_004866845.1\|4105713_4106691_+\|PTS-glucitol/sorbitol-transporter-subunit-IIB	unknown	unknown	gnl\|CDD\|129905
NZ_CP008886.1\|WP_032718148.1\|4119952_4121395_+\|PTS-cellobiose/arbutin/salicin-transporter-subunit-IIBC	unknown	unknown	gnl\|CDD\|182081
NZ_CP008886.1\|WP_004866844.1\|4105153_4105717_+\|PTS-glucitol/sorbitol-transporter-subunit-IIC	unknown	unknown	gnl\|CDD\|129901

Protein	Function_ID	Function_description	E-value
NZ_CP008886.1\|WP_065906992.1\|4110053_4111598_-\|nitric-oxide-reductase-transcriptional-regulator-NorR	gnl\|CDD\|235331	PRK05022, PRK05022, nitric oxide reductase transcriptional regulator NorR.	0
NZ_CP008886.1\|WP_065906991.1\|4106704_4107067_+\|PTS-glucitol/sorbitol-transporter-subunit-IIA	gnl\|CDD\|182419	PRK10377, PRK10377, PTS glucitol/sorbitol transporter subunit IIA.	3.27792e-79
NZ_CP008886.1\|WP_065906993.1\|4115750_4117985_-\|carbamoyltransferase-HypF	gnl\|CDD\|223146	COG0068, HypF, Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones].	0
NZ_CP008886.1\|WP_004866860.1\|4113230_4114364_+\|NADH:flavorubredoxin-reductase-NorW	gnl\|CDD\|179902	PRK04965, PRK04965, NADH:flavorubredoxin reductase NorW.	0
NZ_CP008886.1\|WP_065906995.1\|4123491_4123962_-\|hydrogenase-maturation-peptidase-HycI	gnl\|CDD\|236925	PRK11544, hycI, hydrogenase 3 maturation protease; Provisional.	9.53338e-106
NZ_CP008886.1\|WP_015585878.1\|4118672_4119686_-\|LacI-family-DNA-binding-transcriptional-regulator	gnl\|CDD\|380494	cd06270, PBP1_GalS-like, ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Transcription of the galactose regulon genes is regulated by Gal iso-repressor (GalS) and Gal repressor (GalR) in different ways, but both repressors recognize the same DNA binding site in the absence of D-galactose. GalS is a dimeric protein like GalR,and its major role is in regulating expression of the high-affinity galactose transporter encoded by the mgl operon, whereas GalR is the exclusive regulator of galactose permease, the low-affinity galactose transporter. GalS and GalR are members of the LacI-GalR family of transcription regulators and both contain the type 1 periplasmic binding protein-like fold. Hence, they are homologous to the periplasmic sugar binding of ABC-type transport systems.	2.6266e-120
NZ_CP008886.1\|WP_044349640.1\|4111785_4113234_+\|anaerobic-nitric-oxide-reductase-flavorubredoxin	gnl\|CDD\|235475	PRK05452, PRK05452, anaerobic nitric oxide reductase flavorubredoxin; Provisional.	0
NZ_CP008886.1\|WP_015585884.1\|4107928_4108288_+\|transcriptional-regulator-GutM	gnl\|CDD\|182322	PRK10234, PRK10234, transcriptional regulator GutM.	7.23916e-73
NZ_CP008886.1\|WP_004866849.1\|4107084_4107864_+\|sorbitol-6-phosphate-dehydrogenase	gnl\|CDD\|183489	PRK12384, PRK12384, sorbitol-6-phosphate dehydrogenase; Provisional.	0
NZ_CP008886.1\|WP_004866853.1\|4108359_4109133_+\|DNA-binding-transcriptional-repressor	gnl\|CDD\|182457	PRK10434, srlR, DNA-binding transcriptional repressor.	0
NZ_CP008886.1\|WP_004866877.1\|4124361_4125129_-\|NADH-quinone-oxidoreductase-subunit-B-family-protein	gnl\|CDD\|225799	COG3260, COG3260, Ni,Fe-hydrogenase III small subunit [Energy production and conversion].	5.79885e-84
NZ_CP008886.1\|WP_004866862.1\|4114707_4115754_-\|HoxN/HupN/NixA-family-nickel/cobalt-transporter	gnl\|CDD\|225911	COG3376, HoxN, High-affinity nickel permease [Inorganic ion transport and metabolism].	3.51835e-143
NZ_CP008886.1\|WP_015585883.1\|4109125_4110091_+\|arabinose-5-phosphate-isomerase-GutQ	gnl\|CDD\|183186	PRK11543, gutQ, arabinose-5-phosphate isomerase GutQ.	0
NZ_CP008886.1\|WP_004866872.1\|4121423_4122848_+\|6-phospho-beta-glucosidase	gnl\|CDD\|182112	PRK09852, PRK09852, cryptic 6-phospho-beta-glucosidase; Provisional.	0
NZ_CP008886.1\|WP_015585877.1\|4123954_4124365_-\|HycH-family-protein	gnl\|CDD\|185042	PRK15084, PRK15084, formate hydrogenlyase maturation protein HycH; Provisional.	3.4923e-89
NZ_CP008886.1\|WP_065906997.1\|4125128_4125671_-\|4Fe-4S-dicluster-domain-containing-protein	gnl\|CDD\|183492	PRK12387, PRK12387, formate hydrogenlyase complex iron-sulfur subunit; Provisional.	8.63964e-116
NZ_CP008886.1\|WP_004866866.1\|4117997_4118525_-\|electron-transport-protein-HydN	gnl\|CDD\|182382	PRK10330, PRK10330, electron transport protein HydN.	2.3274e-112
NZ_CP008886.1\|WP_004866845.1\|4105713_4106691_+\|PTS-glucitol/sorbitol-transporter-subunit-IIB	gnl\|CDD\|129905	TIGR00825, EIIBC-GUT, PTS system, glucitol/sorbitol-specific, IIBC component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. The Gut family consists only of glucitol-specific permeases, but these occur both in Gram-negative and Gram-positive bacteria.E. coli consists of IIA protein, a IIC protein and a IIBC protein. This family is specific for the IIBC component. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids, Signal transduction, PTS].	0
NZ_CP008886.1\|WP_032718148.1\|4119952_4121395_+\|PTS-cellobiose/arbutin/salicin-transporter-subunit-IIBC	gnl\|CDD\|182081	PRK09796, PRK09796, PTS system cellobiose/arbutin/salicin-specific transporter subunits IIBC; Provisional.	0
NZ_CP008886.1\|WP_004866844.1\|4105153_4105717_+\|PTS-glucitol/sorbitol-transporter-subunit-IIC	gnl\|CDD\|129901	TIGR00821, Glucitol/sorbitol_permease_IIC_component, PTS system, glucitol/sorbitol-specific, IIC component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. The Gut family consists only of glucitol-specific transporters, but these occur both in Gram-negative and Gram-positive bacteria.E. coli consists of IIA protein, a IIC protein and a IIBC protein. This family is specific for the IIC component. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids, Signal transduction, PTS].	5.86526e-122

>NZ_CP008886.1|WP_004866860.1|4113230_4114364_+|NADH:flavorubredoxin-reductase-NorW
MSDGIVIIGSGFAARQLVKNIRKQDTHIPLTLIAADSMDEYNKPDLSHVVSRGQRADDLTLQTAGEFAEQYHLRLFPYTWVSDLDAAAKVVKSQDREWRYDKLVLATGAAPFIPPVPGHELMLTLNSQREYGAAQSQLHDAQRVLIVGGGLIGCELAMDFCRAGKAVTVVDNSASVLSALMPPEVSSRLQHRLTDMGVHLMLKTQLEGLEQTADGIRVSLDRQRSVTVDAVVAAAGLRPETALARHAGLMIRRGVVVNSRLQTSDPAIYALGDCAEINGSVLPFLQPILLSAMCLAKNLLSQANELTLPPMLVKVKTPDLPLHLAGETQRDDLTWNLVAAKEGVVAKGVDAANQLRAFVVSEDRMKEAFALLKQLVR
>NZ_CP008886.1|WP_044349640.1|4111785_4113234_+|anaerobic-nitric-oxide-reductase-flavorubredoxin
MSILVKNNIHWVGQRDWEVRDFHGTEYKTLRGSSYNSYLIREEKNVLIDTVDHKFSREFVQNLRSEIDLADIDYIVINHAEEDHAGALTELMNSIPDTPIYCTANAIDSITGHHHHPEWNFKVVKTGDSLDIGNGKQLIFVETPMLHWPDSMMTYMTGDAVLFSNDAFGQHYCDEHLFNDEVDQTELFEQCQRYYANILTPFSRLVTPKITEILGFNLPVDMIATSHGVVWRDNPTQIVELYLKWAADYQEDRITLFYDTMSNNTRMMADAIAQGITDVDPRVAVKIFNVARSDKNEILTNVFRSKGVLVGTSTMNNVMMPKIAGLVEEMTGLRFRNKRASAFGSHGWSGGAVDRLSTRLQDAGFEMSLSLKAKWRPDLDALELCREHGREIARQWALSPLPVAAVQTAPEQENCACAAAAAADLGPSMQCSVCQWVYDPAKGEPNQDVQPGTPWSEVPDNFLCPECSLGKDVFDVLATEAK
>NZ_CP008886.1|WP_065906992.1|4110053_4111598_-|nitric-oxide-reductase-transcriptional-regulator-NorR
MSFSLQVLAKIAIDLQSDIGHADRFPRLIATLRQILGCDASALLRYDAHQFVPLAIDGLAQDVLGRRFALAGHPRLEAIARAGDVVRFPADSDLPDPYDGLIPGQESLKVHACVGLPLFAGQTLIGALTLDGMDADRFDSFSDEELRLIAALVAGALNNALLIARLENQNVLPEASASYTPPDRQEIIGLSAPIQQLKKEIDIVAASDLNVLISGETGTGKELVAKAVHQGSPRAANPLIYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRSLRVDVRVLAATNRDLRQEVIAGRFRADLYHRLSVFPLSVPALRDRDDDVVLLAGYFCEQCRLRMGLAQVVLSDATRASLRSWPWPGNVRELEHAIHRAVVLARATQAGDEVRLDPAHFQFAVDAPGLPATTPALPMPAINLRAATEAFQREAISRALADNHRNWAAAARALELDVANLHRLAKRLGLKESRPDRSSAG
>NZ_CP008886.1|WP_015585883.1|4109125_4110091_+|arabinose-5-phosphate-isomerase-GutQ
MSNFLLEAGRQTLMLELQEASRLPERLGDDFIRAAETIIHCEGKLVVSGIGKSGHIGKKLAATFASTGTPAFFVHPAEALHGDLGMLDGRDVMLFISYSGSAKELDLIVPRLEEKGIPLLAMTGKSQSPLALAAKAVLDIAVEREACPMHLAPTSSTVNTLMLGDALAMAVMQARGFNEEDFARSHPAGALGARLLNKVHHLMRRDDDVPRVDLDTRVMDAMLELSRTGLGLVAVCDAQNRVQGVFTDGDLRRWLVGGGTLNDAVAQAMTRNGVTLQAESRAVEAKERLMKHKISAAPVVDENGLLVGAINLQNFYQAGIL
>NZ_CP008886.1|WP_004866853.1|4108359_4109133_+|DNA-binding-transcriptional-repressor
MKPRQRQAAIVEHLQAQGKCSVEELAQHFDTTGTTIRKDLVILENAGTVIRTYGGVVLNKDEPDPPIDHKTLINTHKKALIAETAVHYIHDGDSIILDAGSTVLQMVPLLSRFNNITVMTNSLHIVNALSELDNEQTILMPGGTFRKKSASFHGQLAENAFEQFSFDKLFMGTDGIDLNAGVTTFNEVYTVSKAMCNAAREVILMADSSKFGRKSPNIVCGLERVDKLITDAGIDPTFQRALEEKGIEVIITGEEHE
>NZ_CP008886.1|WP_015585884.1|4107928_4108288_+|transcriptional-regulator-GutM
MVSALITVAAIAWIAQLAFGGWQIRRFNREFDKLCQQGRVGVGRSSGRFKPRAIVAIAFDDHDRVSDTLLMRGVTVFARPQKIPAIKGQYREELRPDMIFPQDPLCQNALSLALKPKHV
>NZ_CP008886.1|WP_004866849.1|4107084_4107864_+|sorbitol-6-phosphate-dehydrogenase
MNQVAVVIGGGQTLGEFLSRGLAAQGYRVAVVDIQSDKATRVAQAINDEYGEGTAYGFGADATSEASVMALARGVDEIFARVDLLVYSAGIAKAAFISDFALGDFDRSLQVNLVGYFLCAREFSRLMIRDGIKGRIIQINSKSGKVGSKHNSGYSAAKFGGVGLTQSLALDLAEYGITVHALMLGNLLKSPMFQSLLPQYASKLGIAEDEVEQYYIDKVPLKRGCDYQDVLNVLMFYASPQASYCTGQSINVTGGQVMF
>NZ_CP008886.1|WP_065906991.1|4106704_4107067_+|PTS-glucitol/sorbitol-transporter-subunit-IIA
MTVIYQTTITRIGASATMALEEQMLITFREGAPADIEEYCFIHNHGEFSGALAPGAELQLGEQRYPVTAVGDVAEQNLRELGHITLRFDGHSEADFPGTVHVSGPVPDAIAPGCILKFVA
>NZ_CP008886.1|WP_004866845.1|4105713_4106691_+|PTS-glucitol/sorbitol-transporter-subunit-IIB
MTRIRIEKGASGWGGPLELDAVAGKKIVYITAGTRPAIVDKIASLTGWQAVDGFKEGEPPEEEIGVAIIDCGGTLRCGLYPKRRIPTVNIHATGKSGPLAQYIVEDIYVSGVKEENVRLLTHDGAAAPETKPGQSAPRDYDTSKKITEQSDGLLAKVGMGMGSVVAVLFQSGRDTIDTVLKTILPFMAFVSALIGIIMASGIGDWIAHGLAPLASHPLGLVTLALICSFPLLSPFLGPGAVIAQVIGVLIGVQIGLGNIPPHLALPALFAINAQAACDFIPVGLSLAEARQDTVRVGVPSVLVGRFLTGAPTVLIAWFVSGFIYQ
>NZ_CP008886.1|WP_004866844.1|4105153_4105717_+|PTS-glucitol/sorbitol-transporter-subunit-IIC
MIEVITHGAEWFIGLFQKGGEVFTGMVTGILPLLISLLVIMNALINFIGQQRIEKLAQRCAGNPISRYLLLPCIGTFVFCNPMTLSLGRFMPEKYKPSYYAAASYSCHSMNGLFPHINPGELFVYLGIASGLTTLGLPLGPLAVSYLLVGLVTNFFRGWVTDLTTSIFEKKMGIQLEQKVHLSGATS
>NZ_CP008886.1|WP_004866862.1|4114707_4115754_-|HoxN/HupN/NixA-family-nickel/cobalt-transporter
MIVTILRQQPRAAALVLGLVVANLLAWGWAWQAFGDSGALMAASLLAWGYGLRHAVDADHIAAIDSVTRKMMQQGRRPFAVGAWFSFGHSSIVVLASAAIAATATAFGQQMSWLHDTGSVIGTAVSALFLLLMAFINLVILRSVWRSFRTWKRGGKVSDEVATGGGMMSWLFGKTFRLISRSWQMYLVGFLFGLGFDTATEIGVLGISAASASSGMSIWSIMVFPALFASGMALVDTLDNVLMVGAYGWAFSKPQRKLYYNMTITGTSVVVALFIGGLEALGLLMDKFSFSGGLWRWVAALNDNLGDAGFVVIGLFVACWVLSVLNYRWRGYDNLARQVADSPGSRGV
>NZ_CP008886.1|WP_065906993.1|4115750_4117985_-|carbamoyltransferase-HypF
MNGVQIRIRGKVQGVGFRPFVWQLAQESARCGDVCNDGDGVLVRLLGDEAAFLAALTRRCPPLARIDSVETRPFHWRTLPQDFAIRESGGGSMRTQIVPDAATCPACLAEMNNPRDRRYRYPFINCTHCGPRFTIIRAMPYDRPFTSMAPFPLCPRCEAEYRHPGDRRFHAQPVACADCGPRLEWRAEGESLVGEAALQAAIHQLQAGQIVAIKGVGGFHLVCDAGNPRAVAALRTRKHRPAKPLAVMLPAADSLPAAAQALLTSPAAPIVLIEKSQVDGLCDDIAPALNEVGVMLPSNPLQHLVLQALARPLVMTSGNLSGRPPAISNVDALRDLAGIADGFLLHNRDIVQRMDDSVMRQSGEMLRRSRGYVPDAMPLPPGFRDVPPLLCLGADMKNTFCLARGEQAVLSQHFGDLGDEGVEQQWHQARRLMQAVYGFNPSLVVSDTHPGYRSTQWATSLALPVERVLHHHAHAVACLAEHGWPLDGGDVIAVVLDGIGMGENGALWGGECLRVNYRECERLGGLPAVALPGGDLAARQPWRNLLAHCLAYVDDWQNDAQTAALRQHNWPLLARAIDRGMNAPKASSCGRLFDAVACALGCAPDCLSYEGEAACRLEALATACDGVAHPVRLPWQAGELDLATFWPQWLGWRASREQKAWAFHDALACGVAAMARDCATSRGMTTLAFSGGVLHNRLLVSRLTFYLADFTLLFPQQLPAGDGAIAFGQAVVAAARWQAHRVSS
>NZ_CP008886.1|WP_004866866.1|4117997_4118525_-|electron-transport-protein-HydN
MNRFIIADASKCIGCRTCEVACVVSHQENQDCAALTPKSFLPRIHVIKGVNVSTATACRQCEDAPCANVCPNGAIARDKGFIHVMQERCIGCKTCVVACPYGAMEVVVRPVIRHSGAGLNVMAEKAEANKCDLCHHREEGPACIEACPTHALICVDRNKLEQMNSEKRRRTALAW
>NZ_CP008886.1|WP_015585878.1|4118672_4119686_-|LacI-family-DNA-binding-transcriptional-regulator
MATMLEVAKRAGVSKATVSRVLSGNGYVSQETKDRVFQAVAESGYRPNLLARNLATKKSQTLGLVVTNTLYHGVYFSELLFHVARMTEDKGRQLILADGKHSAEEEREAIQYLLDLRCDAIIIYPRFLSVDEMDEIVENQPQPIMVLNRRLRRNASHCVWSDQKASAFTAVEKLIARGHRDIAFITGSLDSPTGIERLSGYKDALTKHGISLNNELIVEGKWTPESGAAGVATLRQRDARYSALVASNDDMAIGAMKQLHQQGVRIPEQVSVIGFDDIVLAPYMVPALSSVKIPVTEMIKESINRLIFMLDGGDLKYQQTFPGELLERDSIAPGPFA
>NZ_CP008886.1|WP_032718148.1|4119952_4121395_+|PTS-cellobiose/arbutin/salicin-transporter-subunit-IIBC
MSKNYAALAKQILTATGGADNITAVTHCMTRLRFVVKDDARVDSAALKSLKGVLGVVRSDNQCQVIIGNTVSQAFREVVNLLPDNMRPAEPQGKPPLTLKRIGAGILDALIGTMSPLIPAIIGGSMVKLLAMILEMSGVLPKGAPTLTILTVIGDGAFFFLPLMVAASAAVKFKTNMSLAIAIAGVLVHPSFIELMAKAAQGEHVEFAFIPVTAVKYTYTVIPALVMTWCLSYIERWVDRITPAVTKNFLKPMLIVLIAAPLAILLIGPLGIWIGSAISALVYTIHSYLGWLSVAIMGALWPLLVMTGMHRVFTPTIIQTIAETGKEGMVMPSEIGANLSLGGSSLAVAWKTKNPELRQTALAAAASAILAGISEPALYGVAVRLKRPLIASLISGFICGAVAGIAGLASHSMAAPGLFTSVQFFDPANPMSIVWVFGVMALAVVLSFVLTLLLGFEDIPVEEAAADARARQTTTRPSHV
>NZ_CP008886.1|WP_004866872.1|4121423_4122848_+|6-phospho-beta-glucosidase
MSTFPHGFLWGGALAANQSEGGYLEGGKGLTTVDTLPHGANRMPVKLGLEKRFQLRDDEFYPSHEAIDFYHRYKEDIALMAEMGFSVFRTSIAWSRLYPNGDELEPNQEGIAFYRSLFEECKKYGIEPLVTLCHFDVPMHLVIEYGSWRNRKMVEFFTRYARTCFEAFDGLVKYWLTFNEINIMLHSPYSGAGLVFEEGENQEQVKYQAAHHELIASALATQIAHEVNPHNQVGCMLAGGNFYPWSCKPEDVWMALEKDRENLFFIDVQARGAYPSYSARVFREKGVTIEKQPADDEILKNTVDFVSFSYYASRCASADMNANNTNAANIVKSLKNPHIKASEWGWGIDPLGLRITMNMMYDRYQKPLFLVENGLGARDEIDANGEIHDDYRISYLREHIKAMRDAIEDGIPVMGYTSWGCIDLVSASTGEMSKRYGFVYVDRDDAGNGTLERKRKKSFWWYKKVIASNGEDLE
>NZ_CP008886.1|WP_065906995.1|4123491_4123962_-|hydrogenase-maturation-peptidase-HycI
MTDVLLCVGNSMMGDDGAGPLLAEMCAARPVGEWVVIDGGSAPENDIVAIRELRPDRLLIVDATDMGLNPGEIRLVDPDDIAEMFMMTTHNMPLNYLIDQLQEDVGEVIFLGIQPDIVGFYYPMTQPIKDAVEVVYHQLSGWKGNGGFAQLEAVDA
>NZ_CP008886.1|WP_015585877.1|4123954_4124365_-|HycH-family-protein
MSETVVFSQLSRKFIDENDATPDQAQQVVYYSLAIGHHLGVIDCLEAALSCPWQDYLAWIATLEEGSTARRKMEGVPKYGEIVIDSNHVTMLANAFDKAQARQTAEQQAWSKTMLSMLHDIHQESAIYLMVRRLRD
>NZ_CP008886.1|WP_004866877.1|4124361_4125129_-|NADH-quinone-oxidoreductase-subunit-B-family-protein
MSNLPGPRDENGIPLPMTVEESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHARLPGEQDDKAAEILHPGMVQPLRVRIDREARRLAGYRYGRQIADDYMRLLAQGDSQVVRWLEAEKDPRLTEIVTHLNQVVEGARIR
>NZ_CP008886.1|WP_065906997.1|4125128_4125671_-|4Fe-4S-dicluster-domain-containing-protein
MFTFIKKVIKTGNATHAYPLEPMPVDKNFRGKPEHTPQQCIGCAACVNACPSNALTVETDLVTRELAWQFNLGRCIFCGRCEEVCPTAAIKLSLEYELAVWKKEDFLQQSRFAICHCRVCERPFAVQKEIDYAIALLGHNGDTRAELHRESFETCPECKRQKCLVPSDRIELTRHMREAS

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Crispr_ID: NZ_CP008886_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP008886_5

5083607-5083752

Orphan

Consensus_repeat	Method
CGCTGGCCGGACAGGCGTATCAGGCGCCGTGTCCGGGAATCCCCC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP008886_5

>merge|NZ_CP008886|5|5083607-5083752|CRISPRCasFinder
CGCTGGCCGGACAGGCGTATCAGGCGCCGTGTCCGGGAATCCCCCTCCCTCCCGTGTAGTGCTACGCTCACCGGGGCTACGGGAATACATTCGCTGCCAGCCGCTGGCCGGACAGGCGTATCAGGCGCCATGTCCGGGAATCCCCC

>NZ_CP008886|5|5|5083607-5083752|CRISPRCasFinder
CGCTGGCCGGACAGGCGTATCAGGCGCCGTGTCCGGGAATCCCCC	TCCCTCCCGTGTAGTGCTACGCTCACCGGGGCTACGGGAATACATTCGCTGCCAGC
CGCTGGCCGGACAGGCGTATCAGGCGCCATGTCCGGGAATCCCCC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP008886.1\|WP_004868882.1\|5077877_5078234_-\|DUF3302-domain-containing-protein	unknown	unknown	gnl\|CDD\|314583
NZ_CP008886.1\|WP_004868906.1\|5090880_5091132_-\|glutaredoxin-3	unknown	unknown	gnl\|CDD\|182607
NZ_CP008886.1\|WP_004868894.1\|5084081_5085737_+\|L-lactate-permease	unknown	unknown	gnl\|CDD\|182445
NZ_CP008886.1\|WP_004868885.1\|5080940_5082089_+\|mannitol-1-phosphate-5-dehydrogenase	unknown	unknown	gnl\|CDD\|235031
NZ_CP008886.1\|WP_004868904.1\|5090354_5090822_-\|protein-export-chaperone-SecB	unknown	unknown	gnl\|CDD\|180234
NZ_CP008886.1\|WP_004868896.1\|5085733_5086507_+\|transcriptional-regulator-LldR	unknown	unknown	gnl\|CDD\|236690
NZ_CP008886.1\|WP_015585526.1\|5082085_5082685_+\|MltR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|236817
NZ_CP008886.1\|WP_004868903.1\|5089338_5090355_-\|NAD(P)H-dependent-glycerol-3-phosphate-dehydrogenase	unknown	unknown	gnl\|CDD\|234629
NZ_CP008886.1\|WP_004868892.1\|5083173_5083536_+\|YibL-family-ribosome-associated-protein	unknown	unknown	gnl\|CDD\|182904
NZ_CP008886.1\|WP_015585527.1\|5075748_5076357_-\|glutathione-S-transferase	unknown	unknown	gnl\|CDD\|182405
NZ_CP008886.1\|WP_004868890.1\|5082673_5082898_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP008886.1\|WP_004868899.1\|5086506_5087691_+\|FMN-dependent-L-lactate-dehydrogenase-LldD	unknown	unknown	gnl\|CDD\|183033
NZ_CP008886.1\|WP_065907231.1\|5072415_5074257_-\|selenocysteine-specific-translation-elongation-factor	unknown	unknown	gnl\|CDD\|182508
NZ_CP008886.1\|WP_004868884.1\|5078898_5080818_+\|PTS-mannitol-transporter-subunit-IICBA	unknown	unknown	gnl\|CDD\|237905
NZ_CP008886.1\|WP_004868901.1\|5087785_5088259_+\|tRNA-(uridine(34)/cytosine(34)/5--carboxymethylaminomethyluridine(34)-2'-O)--methyltransferase-TrmL	unknown	unknown	gnl\|CDD\|182406
NZ_CP008886.1\|WP_004106845.1\|5088436_5089258_-\|serine-O-acetyltransferase	unknown	unknown	gnl\|CDD\|182987
NZ_CP008886.1\|WP_065907234.1\|5074253_5075642_-\|L-seryl-tRNA(Sec)-selenium-transferase	unknown	unknown	gnl\|CDD\|235278
NZ_CP008886.1\|WP_032718389.1\|5091918_5093463_+\|2,3-bisphosphoglycerate-independent-phosphoglycerate-mutase	unknown	unknown	gnl\|CDD\|235463
NZ_CP008886.1\|WP_004868909.1\|5091241_5091673_-\|rhodanese-like-domain-containing-protein	unknown	unknown	gnl\|CDD\|238089
NZ_CP008886.1\|WP_004868880.1\|5076738_5077875_-\|HlyD-family-secretion-protein	unknown	unknown	gnl\|CDD\|224482

Protein	Function_ID	Function_description	E-value
NZ_CP008886.1\|WP_004868882.1\|5077877_5078234_-\|DUF3302-domain-containing-protein	gnl\|CDD\|314583	pfam11742, DUF3302, Protein of unknown function (DUF3302). This family of unknown function is expressed by proteobacteria.	1.54191e-42
NZ_CP008886.1\|WP_004868906.1\|5090880_5091132_-\|glutaredoxin-3	gnl\|CDD\|182607	PRK10638, PRK10638, glutaredoxin 3; Provisional.	6.78091e-59
NZ_CP008886.1\|WP_004868894.1\|5084081_5085737_+\|L-lactate-permease	gnl\|CDD\|182445	PRK10420, PRK10420, L-lactate permease; Provisional.	0
NZ_CP008886.1\|WP_004868885.1\|5080940_5082089_+\|mannitol-1-phosphate-5-dehydrogenase	gnl\|CDD\|235031	PRK02318, PRK02318, mannitol-1-phosphate 5-dehydrogenase; Provisional.	0
NZ_CP008886.1\|WP_004868904.1\|5090354_5090822_-\|protein-export-chaperone-SecB	gnl\|CDD\|180234	PRK05751, PRK05751, preprotein translocase subunit SecB; Validated.	1.08647e-90
NZ_CP008886.1\|WP_004868896.1\|5085733_5086507_+\|transcriptional-regulator-LldR	gnl\|CDD\|236690	PRK10421, PRK10421, DNA-binding transcriptional repressor LldR; Provisional.	8.66957e-154
NZ_CP008886.1\|WP_015585526.1\|5082085_5082685_+\|MltR-family-transcriptional-regulator	gnl\|CDD\|236817	PRK11001, mtlR, MltR family transcriptional regulator.	3.47482e-102
NZ_CP008886.1\|WP_004868903.1\|5089338_5090355_-\|NAD(P)H-dependent-glycerol-3-phosphate-dehydrogenase	gnl\|CDD\|234629	PRK00094, gpsA, NAD(P)H-dependent glycerol-3-phosphate dehydrogenase.	0
NZ_CP008886.1\|WP_004868892.1\|5083173_5083536_+\|YibL-family-ribosome-associated-protein	gnl\|CDD\|182904	PRK11020, PRK11020, YibL family ribosome-associated protein.	3.98303e-57
NZ_CP008886.1\|WP_015585527.1\|5075748_5076357_-\|glutathione-S-transferase	gnl\|CDD\|182405	PRK10357, PRK10357, putative glutathione S-transferase; Provisional.	2.8591e-133
NZ_CP008886.1\|WP_004868899.1\|5086506_5087691_+\|FMN-dependent-L-lactate-dehydrogenase-LldD	gnl\|CDD\|183033	PRK11197, lldD, L-lactate dehydrogenase; Provisional.	0
NZ_CP008886.1\|WP_065907231.1\|5072415_5074257_-\|selenocysteine-specific-translation-elongation-factor	gnl\|CDD\|182508	PRK10512, PRK10512, selenocysteinyl-tRNA-specific translation factor; Provisional.	0
NZ_CP008886.1\|WP_004868884.1\|5078898_5080818_+\|PTS-mannitol-transporter-subunit-IICBA	gnl\|CDD\|237905	PRK15083, PRK15083, PTS system mannitol-specific transporter subunit IICBA; Provisional.	0
NZ_CP008886.1\|WP_004868901.1\|5087785_5088259_+\|tRNA-(uridine(34)/cytosine(34)/5--carboxymethylaminomethyluridine(34)-2'-O)--methyltransferase-TrmL	gnl\|CDD\|182406	PRK10358, PRK10358, tRNA (uridine(34)/cytosine(34)/5-carboxymethylaminomethyluridine(34)-2'-O)-methyltransferase TrmL.	3.07441e-115
NZ_CP008886.1\|WP_004106845.1\|5088436_5089258_-\|serine-O-acetyltransferase	gnl\|CDD\|182987	PRK11132, cysE, serine acetyltransferase; Provisional.	0
NZ_CP008886.1\|WP_065907234.1\|5074253_5075642_-\|L-seryl-tRNA(Sec)-selenium-transferase	gnl\|CDD\|235278	PRK04311, PRK04311, selenocysteine synthase; Provisional.	0
NZ_CP008886.1\|WP_032718389.1\|5091918_5093463_+\|2,3-bisphosphoglycerate-independent-phosphoglycerate-mutase	gnl\|CDD\|235463	PRK05434, PRK05434, 2,3-bisphosphoglycerate-independent phosphoglycerate mutase.	0
NZ_CP008886.1\|WP_004868909.1\|5091241_5091673_-\|rhodanese-like-domain-containing-protein	gnl\|CDD\|238089	cd00158, RHOD, Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins.	8.50138e-27
NZ_CP008886.1\|WP_004868880.1\|5076738_5077875_-\|HlyD-family-secretion-protein	gnl\|CDD\|224482	COG1566, EmrA, Multidrug resistance efflux pump [Defense mechanisms].	9.58868e-91

>NZ_CP008886.1|WP_004868892.1|5083173_5083536_+|YibL-family-ribosome-associated-protein
MKEVEKNEIKRLSDRLDAIRHQQADLSLVEAADKYAELEKEKTTLEAEIIRLREVQGQKLSKEAQKLMSLPHRRAITKKEQADMGKLKKSVRGLVIVHPMTALGREMNLKEMTGFAKTEF
>NZ_CP008886.1|WP_004868890.1|5082673_5082898_-|hypothetical-protein
MAKIGDGVPRIIDKTVDFMASSQAFMEYLKKSPRLQNVPREIPQNKEALYLSRLEYYRQLYRPACDQVESGSER
>NZ_CP008886.1|WP_015585526.1|5082085_5082685_+|MltR-family-transcriptional-regulator
MRQDLARYEPRPLLLLSDMQAIMEETQAFENRVLERLNAGKTVRSFLIATVELLTEAVNILVLQVFRKDDYAVKYAVEPLLDGDGPLGDLSVRLKLIYGLGVISRAEYEDAELLMALREELNHDGNEYSFTDDEILGPFGELHCVTALPPTPLFDDSDEELLAMQKLRYQQVVRSTMMLSLTELISRISLKKAFQKSTL
>NZ_CP008886.1|WP_004868885.1|5080940_5082089_+|mannitol-1-phosphate-5-dehydrogenase
MNALHFGAGNIGRGFIGKLLADAGIALTFADVNQVVLDALNARHSYQVHVVGENEQVDTVSGVNAVSSIGDEVIDLIARVDLITTAVGPVVLERIAPAIAQGLAKRKAQGITAPLNIIACENMVRGTTQLKGHVFNALAEEDKAWVEANVGFVDSAVDRIVPPSASATHDPLEVTVETFSEWIVDKTQFKGTLPAIPGMELTDNLMAFVERKLFTLNTGHAITAYLGKLAGHQTIRDAILDENIRAVVKGAMEESGAVLIKRYGFDAQKHAAYIQKILGRFENPYLKDDVERVGRQPLRKLSAGDRLIKPLLGTLEYALPHVNLVKGIAAAMHFRSEEDPQAQELAALINEKGPQAALAQISGLDAASAVVTEAVNDYNATK
>NZ_CP008886.1|WP_004868884.1|5078898_5080818_+|PTS-mannitol-transporter-subunit-IICBA
MSSDIKIKVQSFGRFLSNMVMPNIGAFIAWGIITALFIPTGWLPNETLAKLVGPMITYLLPLLIGYTGGKLIGGERGGVVGAITTMGVIVGADMPMFLGAMIAGPLGGWAIKHFDSWVDGKIKSGFEMLVNNFSAGIIGMILAILAFLGIGPAVEVLSKILAAGVNFMVVHDMLPLASIFVEPAKILFLNNAINHGIFSPLGIQQSHELGKSIFFLIEANPGPGMGVLLAYMFFGRGNAKQSAGGAAIIHFLGGIHEIYFPYVLMNPRLILAVILGGMTGVFTLTILNGGLVSPASPGSILAVLAMTPKGAYFANIAAIIAAMAVSFVVSAILLKTSKVKEEDDIDAATRRMQDMKAESKGAATPLSAGAVANDLSHVRKIIVACDAGMGSSAMGAGVLRKKVQDAGLGNISVTNCAINNLPPDVDLVITHRDLTERAMRQVPQAQHISLTNFLDSGLYTSLTERLVAAQRHTDNEEKVRGSLKDSFEAADTNLFKLGAENIFLGRKAATKEEAIRFAGEQLVKGGYVEPEYVQAMLDREKLTSTYLGESIAVPHGTIEAKDRVLKTGVVFCQYPEGVRFGEDEDDVARLVIGIAARNNEHIHVITSLTNALDDESVIERLTRTTSVEEVLALLKGTKA
>NZ_CP008886.1|WP_004868882.1|5077877_5078234_-|DUF3302-domain-containing-protein
MFLNYFALGVLIFVFLVLFYGIIAIHDIPYLMAKKRNHPHADAIHTAGWVSLFTLHVIWPFLWIWATLYQPERGWGMKSHLPPSERDPDIDRLSQRVAELEKRLGAVPSSADKETPER
>NZ_CP008886.1|WP_004868880.1|5076738_5077875_-|HlyD-family-secretion-protein
MDLLIVLTYVAIAWAVFKIFRIPVNQWTLATAALGGIFLVSALILLMNYNHPYTFTAQKAVISIPITPQVTGIVSTVTDKTNQRVNKGDVLFTIDPVRYQARVDRLQADLVTALHSINTLKAQLSEAQANTVRVSAERDRLYKDYQRYLKGSQARVNPFSESDIDNARQNYLAQDALVKASVAEQAQIQSQLDSMVGGEQSQVVSLRAQLAEAKYNLDQTVIRAPSNGYVTQVLIRPGTYAAALPLRPVMVFIPEQKRQIVAQFRQNSLLRLKPGDDAEVVFNALPGQVFHGKLTNILPVVPGGSYQAQGALQSLTVLPGTDGVLATIELDPNADVDSLPDGIYAQVAVYSDHFSHVSVMRKVLLRMTSWMHYLYLDH
>NZ_CP008886.1|WP_015585527.1|5075748_5076357_-|glutathione-S-transferase
MKLIGSYTSPFVRKISVILLEKNLPFEFVNEFPYQDVNGVGKYNPLGKVPVLVTDGGECWYDSPIIAQYLDQLGAAPAMVPADPKAALKMRQLEALADGVMEAAQALVREKSRPAAQQSESELLRQREKVTRGLDALEAYVADGSLRIDEVNLATISAACAIAYLNFRRVAPGWCATRPQLIKLVDALFQRASFARTEPPRT
>NZ_CP008886.1|WP_065907234.1|5074253_5075642_-|L-seryl-tRNA(Sec)-selenium-transferase
MTTDIRALYTRLPATDRLLRDPAFSAVLARYGHAQVVALLRQMLEEAREYIRQQQALPAWCDDWPQETGRRLAQTLQSALRPVFNLTGTVLHTNLGRAIQAEAAVDAVAQAMRAPVTLEYSLDDAGRGHRDRALAELLCRITGAEDACIVNNNAAAVLLMLAATAGGKEVVLSRGELVEIGGAFRIPDVMRQAGCILHEVGTTNRTHAKDYRQAVNENTGLLMKVHTSNYSIEGFTTAVDEAGLAAIGRETGIPVVADLGSGSLVDLSQYGLPKEPMPQEMIAAGVSLVSFSGDKLLGGPQAGIIVGEKAMIARLQQHPLKRALRADKMTLAALEATLRLYLHPETLADRLPTLRLLTRTAEAIQAQALRLQPLLAAHYTQFEVRVEPCQSQIGSGSLPVGRLPGAALTFTPRDGRGSQLEALAARWRGLTIPVIGRIYDGRLWLDLRCLEDEPRFMEMLLQ
>NZ_CP008886.1|WP_065907231.1|5072415_5074257_-|selenocysteine-specific-translation-elongation-factor
MIIATAGHVDHGKTTLLQAITGVNADRLPEEKSRGMTIDLGYAYWPQPDGRVLGFIDVPGHEKFLSNMLAGVGGIDHALLVVACDDGVMAQTREHLAILQLTGKPSLTVALTKADRVEAQRVEEVRGDVTAVLAEFGFTDATLFATAATENQGIAELREHLLQLSARAHPQHQRFRLAIDRAFTVKGAGLVVTGTALSGEVNVGDTLWLTGVDKPMRVRGLHAQNQAVGQAWAGQRIALNIVGDAQKEALNRGDWLLSVRPPEASERVIVELQCHTPLTQWQSLHIHHAASHITGRVSLLEGDLAELVLDTPLWLADNDRLVLRDISARVTLAGARVVTLNPPRRGKRKSEYLQWLAALAASQGDDAQALDIHLQRDAVRLDDFAWARQLSDEGLNVLINRPDYLQAGNSLLSAPLAARWQRKLLDALARYHDQHRDEPGPGRERLRRIALPMEDEALVLLLIEQMRASGTIDSHHGWLHLPEHKAGFTEEQQSIWLRVADLFADEPWWVRDLAKEAGVEEALMRAVLRQAAQQGMITAIVKDRYYRNDRIVAFARMIRDLDQRRGSTCAADFRDTLNVGRKLAIQILEYFDRIGFTRRRGNDHILRDKALFL
>NZ_CP008886.1|WP_004868894.1|5084081_5085737_+|L-lactate-permease
MNLWQQNYDPAGNIWLSSLIASLPILFFFFALIKLKLKGYLAATWTVAIALSVALLFYKMPVDRALTSVVYGFFYGLWPIAWIIIAAVFVYKISVKTGQFDIIRSSILSITPDQRLQMLIVGFSFGAFLEGAAGFGAPVAITAALLVGLGFNPLYAAGLCLIVNTAPVAFGAMGIPILVAGQVTGIDSFAIGQMVGRQLPFLTIIVLFWIMAIMDGWRGIKETWPAVMVAGGSFAIAQYLSSNFLGPELPDIISSLVSLVCLTLFLKRWQPVRIFRFGDMGAAQVDQTLARTHYSAGQVVRAWSPFLFLTATVTLWSIPPFKALFAPGGAMYDFVINISVPFLDKMVARMPPVVSAATPYAAVYKFDWLSATGTAILFAAILSIVWLRMKPKDALVTFGSTLKELALPIYSIGMVLAFAFISNYSGLSSTLALALAHTGHAFTFFSPFLGWLGVFLTGSDTSSNALFAALQATAAQQIGVSDILLVAANTTGGVTGKMISPQSIAIACAAVGLVGKESDLFRFTVKHSLIFTCMVGVITTLQAYVLTWMIP
>NZ_CP008886.1|WP_004868896.1|5085733_5086507_+|transcriptional-regulator-LldR
MIVMPRRLADDVARRVRALIEEQKLEAGMRLPAERQLAALLGVSRNSLREALAMLVNEGLLVSRRGGGTFVRWQHEAWSEQNIVQPLKTLLADDPDYSFDILEARHAIEASTAWHAAMRATDAEKERIRLCFEATQSEDPDLASQADVRFHLAIAEASHNVVLLQTMRGFFDLLQSSVKQSRQRMYLVPPVFARLTEQHQAVMEAIFAGDAEGARQAMMAHLGFVHATIKHFDEDQARQARITRLPGDHNENARENP
>NZ_CP008886.1|WP_004868899.1|5086506_5087691_+|FMN-dependent-L-lactate-dehydrogenase-LldD
MIISAASDYRAAAQRILPPFLFHYIDGGAYAEHTLRRNVEDLSDVALRQRVLKNMSDLSLETTLFKEKLSMPVALAPVGLCGMYARRGEVQAAGAADDKGIPFTLSTVSVCPIEEVAPTIKRPMWFQLYVLRDRGFMRNALERAKAAGCSTLVFTVDMPTPGARYRDAHSGMSGPNAAMRRYWQAMTHPQWAWDVGLNGRPHDLGNISAYLGKPTGLEDYIGWLANNFDPSISWKDLEWIREFWDGPMVIKGILDPQDARDAVRFGADGIVVSNHGGRQLDGVLSSARALPAIADAVKGDITILADSGIRNGLDVVRMIALGADSVLLGRAYLYALATHGKQGVANLLNLIEKEMKVAMTLTGTKTIGEISRDSLVQNADALQTFNAIKQGNAA
>NZ_CP008886.1|WP_004868901.1|5087785_5088259_+|tRNA-(uridine(34)/cytosine(34)/5--carboxymethylaminomethyluridine(34)-2'-O)--methyltransferase-TrmL
MLNIVLFEPEIPPNTGNIIRLCANTGFNLHIIEPMGFTWDDKRLRRAGLDYHEFTAVQRHRDYAAFVESARPQRLFALTTKGTPAHSAVSYQDGDFLMFGPETRGLPASILDALPAQQKIRIPMMPDSRSMNLSNAVSVVVYEAWRQLGYPGALLRS
>NZ_CP008886.1|WP_004106845.1|5088436_5089258_-|serine-O-acetyltransferase
MPCEELDIVWNNIKAEARALADCEPMLASFYHATLLKHENLGSALSYMLANKLASPIMPAIAIREVVEEAYAADPEMIASAACDIQAVRTRDPAVDKYSTPLLYLKGFHALQAYRIGHWLWNQGRRALAIFLQNQVSVSFQVDIHPAAKIGRGIMLDHATGIVVGETAVIEDDVSILQSVTLGGTGKTSGDRHPKIREGVMIGAGAKILGNIEVGRGAKIGAGSVVLQPVPPHTTAAGVPARIVGKPESDKPAMDMDQHFNGIHHTFEYGDGI
>NZ_CP008886.1|WP_004868903.1|5089338_5090355_-|NAD(P)H-dependent-glycerol-3-phosphate-dehydrogenase
MNALNAAMTVIGAGSYGTALAITLARNGHDVVLWGHDPKHIATLQHDRCNAAFLPDVPFPDTLHLESDLSAALAASRDILVVVPSHVFGEVLRQIKPLMRPDARLVWATKGLEAETGRLLQDVAREALGDTIPLAVISGPTFAKELAAGLPTAISLASTEPQFADDLQRLLHCGKSFRVYINPDFIGVQLGGAVKNVIAIGAGMSDGIGFGANARTALITRGLVEMSRLGTALGADPETFMGMAGLGDLVLTCTDNQSRNRRFGMMLGQGMDVQSAQDKIGQVVEGYRNTKEVRVLAQRLGVEMPITEEIYQVLYCGKIAREAALTLLGRARKDERSN
>NZ_CP008886.1|WP_004868904.1|5090354_5090822_-|protein-export-chaperone-SecB
MSEQNSTEMTFQIQRIYTKDISFEAPNAPQVFQKDWQPEVKLDLDTASSQLAEGVYEVVLRVTVTAALGEETAFLCEVQQGGIFSIDGIDGNQMAHCLGAYCPNILFPYARECITSLVSRGTFPQLNLAPVNFDALFMNYLQQQAGEGAEQHQDA
>NZ_CP008886.1|WP_004868906.1|5090880_5091132_-|glutaredoxin-3
MANIDIYTKATCPFCIRAKALLNSKGVTFNELPIDGNAAKREEMIQRSGRTTVPQIFIDEQHIGGCDDLYALDSRGGLDPLLR
>NZ_CP008886.1|WP_004868909.1|5091241_5091673_-|rhodanese-like-domain-containing-protein
MQEIMQFVGRHPVLSIAWIALLVAVLFTTFKGLMSKVKVITRGEATRLINKEDAVVVDLRQRDDFRKGHIAGSINLLPTEIKANNVGELEKHKAQPIIVVDGSGMQAQEPASALNKAGFEKVFVLKEGIAGWSGENLPLVRGK
>NZ_CP008886.1|WP_032718389.1|5091918_5093463_+|2,3-bisphosphoglycerate-independent-phosphoglycerate-mutase
MSNSKKPMVLVILDGYGYREDQQDNAIYSAKTPVMDALWAKRPHTLIDASGLEVGLPDRQMGNSEVGHVNLGAGRIVYQDLTRLDVEIKERTFFANPVLTAAVDKAVAAGKAVHIMGLMSPGGVHSHEDHIMAMVELAAERGAEKIYLHAFLDGRDTPPRSAENSLAKFEEKFAALGKGRVASIIGRYYAMDRDNRWDRVEQAYDLMTLAKGEFQADTAVAGLQAAYARDENDEFVKATVIRAEGQADAAMEDGDALIFMNFRADRAREITRAFVNADFDGFARKKEVKLDFVMLTEYAADIKVACAYPPASLANTFGEWMAKNDKTQLRISETEKYAHVTFFFNGGVEEPFKGEDRILINSPKVATYDLQPEMSSAELTEKLVAAIKGGQYDTIICNYPNGDMVGHTGVMEAAIKAVETLDNCIDQVAKAVESVGGQLLITADHGNAEQMRDPATGQAHTAHTNLPVPLIYVGDKAVKVAEGGKLSDIAPTMLSLMGMEIPQEMTGKPLFIVE

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_CP008886_3	3.1\|1284636\|33\|NZ_CP008886\|CRISPRCasFinder	1284636-1284668	33	NZ_CP008886.1	1281568-1281600	0	1.0
NZ_CP008886_3	3.1\|1284636\|33\|NZ_CP008886\|CRISPRCasFinder	1284636-1284668	33	NZ_CP008886.1	1276504-1276536	1	0.97
NZ_CP008886_3	3.1\|1284636\|33\|NZ_CP008886\|CRISPRCasFinder	1284636-1284668	33	NZ_CP008886.1	1276586-1276618	1	0.97
NZ_CP008886_3	3.1\|1284636\|33\|NZ_CP008886\|CRISPRCasFinder	1284636-1284668	33	NZ_CP008886.1	1276666-1276698	1	0.97
NZ_CP008886_3	3.1\|1284636\|33\|NZ_CP008886\|CRISPRCasFinder	1284636-1284668	33	NZ_CP008886.1	1276748-1276780	1	0.97
NZ_CP008886_3	3.1\|1284636\|33\|NZ_CP008886\|CRISPRCasFinder	1284636-1284668	33	NZ_CP008886.1	1281744-1281776	1	0.97
NZ_CP008886_3	3.1\|1284636\|33\|NZ_CP008886\|CRISPRCasFinder	1284636-1284668	33	NZ_CP008886.1	3492259-3492291	1	0.97
NZ_CP008886_3	3.1\|1284636\|33\|NZ_CP008886\|CRISPRCasFinder	1284636-1284668	33	NZ_CP008886.1	1281656-1281688	2	0.939
NZ_CP008886_3	3.1\|1284636\|33\|NZ_CP008886\|CRISPRCasFinder	1284636-1284668	33	NZ_CP008886.1	3492136-3492168	2	0.939

1. spacer 3.1|1284636|33|NZ_CP008886|CRISPRCasFinder matches to position: 1281568-1281600, mismatch: 0, identity: 1.0

ccccgtagccccggtaagcgcagcgccaccggg	CRISPR spacer
ccccgtagccccggtaagcgcagcgccaccggg	Protospacer
*********************************

2. spacer 3.1|1284636|33|NZ_CP008886|CRISPRCasFinder matches to position: 1276504-1276536, mismatch: 1, identity: 0.97

ccccgtagccccggtaagcgcagcgccaccggg	CRISPR spacer
ccctgtagccccggtaagcgcagcgccaccggg	Protospacer
***.*****************************

3. spacer 3.1|1284636|33|NZ_CP008886|CRISPRCasFinder matches to position: 1276586-1276618, mismatch: 1, identity: 0.97

ccccgtagccccggtaagcgcagcgccaccggg	CRISPR spacer
ccctgtagccccggtaagcgcagcgccaccggg	Protospacer
***.*****************************

4. spacer 3.1|1284636|33|NZ_CP008886|CRISPRCasFinder matches to position: 1276666-1276698, mismatch: 1, identity: 0.97

ccccgtagccccggtaagcgcagcgccaccggg	CRISPR spacer
ccctgtagccccggtaagcgcagcgccaccggg	Protospacer
***.*****************************

5. spacer 3.1|1284636|33|NZ_CP008886|CRISPRCasFinder matches to position: 1276748-1276780, mismatch: 1, identity: 0.97

ccccgtagccccggtaagcgcagcgccaccggg	CRISPR spacer
ccctgtagccccggtaagcgcagcgccaccggg	Protospacer
***.*****************************

6. spacer 3.1|1284636|33|NZ_CP008886|CRISPRCasFinder matches to position: 1281744-1281776, mismatch: 1, identity: 0.97

ccccgtagccccggtaagcgcagcgccaccggg	CRISPR spacer
ccccgtagccccggtaagcacagcgccaccggg	Protospacer
*******************.*************

7. spacer 3.1|1284636|33|NZ_CP008886|CRISPRCasFinder matches to position: 3492259-3492291, mismatch: 1, identity: 0.97

ccccgtagccccggtaagcgcagcgccaccggg	CRISPR spacer
ccctgtagccccggtaagcgcagcgccaccggg	Protospacer
***.*****************************

8. spacer 3.1|1284636|33|NZ_CP008886|CRISPRCasFinder matches to position: 1281656-1281688, mismatch: 2, identity: 0.939

ccccgtagccccggtaagcgcagcgccaccggg	CRISPR spacer
ccccgtccccccggtaagcgcagcgccaccggg	Protospacer
******  *************************

9. spacer 3.1|1284636|33|NZ_CP008886|CRISPRCasFinder matches to position: 3492136-3492168, mismatch: 2, identity: 0.939

ccccgtagccccggtaagcgcagcgccaccggg	CRISPR spacer
ccctgtagccccggtaagcgcagcaccaccggg	Protospacer
***.********************.********

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP008886_3	3.1\|1284636\|33\|NZ_CP008886\|CRISPRCasFinder	1284636-1284668	33	NZ_KU254579	Escherichia coli strain YD786 plasmid pYD786-2, complete sequence	59865-59897	2	0.939
NZ_CP008886_3	3.1\|1284636\|33\|NZ_CP008886\|CRISPRCasFinder	1284636-1284668	33	LR134125	Klebsiella aerogenes strain NCTC10006 genome assembly, plasmid: 5	734331-734363	2	0.939
NZ_CP008886_3	3.1\|1284636\|33\|NZ_CP008886\|CRISPRCasFinder	1284636-1284668	33	LR134125	Klebsiella aerogenes strain NCTC10006 genome assembly, plasmid: 5	47055-47087	3	0.909
NZ_CP008886_3	3.1\|1284636\|33\|NZ_CP008886\|CRISPRCasFinder	1284636-1284668	33	LR134125	Klebsiella aerogenes strain NCTC10006 genome assembly, plasmid: 5	734209-734241	3	0.909
NZ_CP008886_3	3.1\|1284636\|33\|NZ_CP008886\|CRISPRCasFinder	1284636-1284668	33	LR134125	Klebsiella aerogenes strain NCTC10006 genome assembly, plasmid: 5	734452-734484	3	0.909
NZ_CP008886_3	3.1\|1284636\|33\|NZ_CP008886\|CRISPRCasFinder	1284636-1284668	33	NZ_CP043437	Enterobacter sp. LU1 plasmid unnamed	263130-263162	3	0.909
NZ_CP008886_3	3.1\|1284636\|33\|NZ_CP008886\|CRISPRCasFinder	1284636-1284668	33	LR134125	Klebsiella aerogenes strain NCTC10006 genome assembly, plasmid: 5	376933-376965	4	0.879
NZ_CP008886_3	3.1\|1284636\|33\|NZ_CP008886\|CRISPRCasFinder	1284636-1284668	33	LR134125	Klebsiella aerogenes strain NCTC10006 genome assembly, plasmid: 5	355135-355167	4	0.879
NZ_CP008886_3	3.1\|1284636\|33\|NZ_CP008886\|CRISPRCasFinder	1284636-1284668	33	NZ_CP043437	Enterobacter sp. LU1 plasmid unnamed	263681-263713	4	0.879
NZ_CP008886_3	3.1\|1284636\|33\|NZ_CP008886\|CRISPRCasFinder	1284636-1284668	33	NZ_CP043437	Enterobacter sp. LU1 plasmid unnamed	396229-396261	4	0.879
NZ_CP008886_3	3.1\|1284636\|33\|NZ_CP008886\|CRISPRCasFinder	1284636-1284668	33	LR134122	Klebsiella aerogenes strain NCTC10006 genome assembly, plasmid: 2	208409-208441	4	0.879
NZ_CP008886_3	3.1\|1284636\|33\|NZ_CP008886\|CRISPRCasFinder	1284636-1284668	33	NZ_CP019203	Salmonella enterica subsp. enterica serovar Infantis strain CFSAN003307 plasmid pCFSAN003307, complete sequence	16051-16083	4	0.879
NZ_CP008886_3	3.1\|1284636\|33\|NZ_CP008886\|CRISPRCasFinder	1284636-1284668	33	NZ_LN868945	Salmonella enterica subsp. enterica serovar Senftenberg strain NCTC10384 plasmid 3, complete sequence	12933-12965	4	0.879
NZ_CP008886_3	3.1\|1284636\|33\|NZ_CP008886\|CRISPRCasFinder	1284636-1284668	33	CP045556	Citrobacter sp. S39 plasmid pS39-1, complete sequence	107062-107094	5	0.848
NZ_CP008886_3	3.1\|1284636\|33\|NZ_CP008886\|CRISPRCasFinder	1284636-1284668	33	NZ_CP045203	Citrobacter sp. NMI7904_11 plasmid pCTEL-2, complete sequence	229936-229968	5	0.848
NZ_CP008886_3	3.1\|1284636\|33\|NZ_CP008886\|CRISPRCasFinder	1284636-1284668	33	NZ_CP022152	Citrobacter freundii strain 705SK3 plasmid p705SK3_1, complete sequence	64063-64095	5	0.848
NZ_CP008886_3	3.1\|1284636\|33\|NZ_CP008886\|CRISPRCasFinder	1284636-1284668	33	NZ_CP019987	Citrobacter werkmanii strain BF-6 plasmid unnamed, complete sequence	124429-124461	5	0.848
NZ_CP008886_3	3.1\|1284636\|33\|NZ_CP008886\|CRISPRCasFinder	1284636-1284668	33	NZ_CP030224	Salmonella enterica strain SA20083039 plasmid pSA20083039.1, complete sequence	86484-86516	5	0.848
NZ_CP008886_3	3.1\|1284636\|33\|NZ_CP008886\|CRISPRCasFinder	1284636-1284668	33	NZ_CP026213	Citrobacter sp. CFNIH10 plasmid pKPC-933d, complete sequence	51137-51169	5	0.848
NZ_CP008886_3	3.1\|1284636\|33\|NZ_CP008886\|CRISPRCasFinder	1284636-1284668	33	NZ_AP023206	Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence	42135-42167	5	0.848
NZ_CP008886_3	3.1\|1284636\|33\|NZ_CP008886\|CRISPRCasFinder	1284636-1284668	33	NZ_MG387191	Citrobacter freundii strain 2262 plasmid pTEM-2262, complete sequence	109979-110011	5	0.848
NZ_CP008886_3	3.1\|1284636\|33\|NZ_CP008886\|CRISPRCasFinder	1284636-1284668	33	NZ_CP048383	Citrobacter freundii strain 62 plasmid p6_A, complete sequence	127034-127066	5	0.848
NZ_CP008886_3	3.1\|1284636\|33\|NZ_CP008886\|CRISPRCasFinder	1284636-1284668	33	NZ_CP026282	Klebsiella oxytoca strain KONIH2 plasmid pKOR-e3cb, complete sequence	172740-172772	5	0.848
NZ_CP008886_3	3.1\|1284636\|33\|NZ_CP008886\|CRISPRCasFinder	1284636-1284668	33	NZ_CP042535	Citrobacter freundii strain E51 plasmid pE51_001, complete sequence	112022-112054	5	0.848
NZ_CP008886_3	3.1\|1284636\|33\|NZ_CP008886\|CRISPRCasFinder	1284636-1284668	33	NZ_CP007734	Klebsiella pneumoniae subsp. pneumoniae KPNIH27 plasmid pKPN-262, complete sequence	179837-179869	5	0.848
NZ_CP008886_3	3.1\|1284636\|33\|NZ_CP008886\|CRISPRCasFinder	1284636-1284668	33	NZ_CP026058	Citrobacter freundii strain FDAARGOS_73 plasmid unnamed2, complete sequence	283611-283643	5	0.848
NZ_CP008886_3	3.1\|1284636\|33\|NZ_CP008886\|CRISPRCasFinder	1284636-1284668	33	NZ_CP029436	Klebsiella quasipneumoniae strain CAV2013 plasmid pKPC_CAV2013, complete sequence	290573-290605	5	0.848
NZ_CP008886_3	3.1\|1284636\|33\|NZ_CP008886\|CRISPRCasFinder	1284636-1284668	33	NZ_CP029431	Klebsiella quasipneumoniae strain CAV2018 plasmid pKPC_CAV2018-435, complete sequence	411228-411260	5	0.848
NZ_CP008886_3	3.1\|1284636\|33\|NZ_CP008886\|CRISPRCasFinder	1284636-1284668	33	CP022016	Salmonella enterica subsp. enterica serovar India str. SA20085604 plasmid unnamed1, complete sequence	156621-156653	5	0.848
NZ_CP008886_3	3.1\|1284636\|33\|NZ_CP008886\|CRISPRCasFinder	1284636-1284668	33	NZ_CP018017	Kosakonia radicincitans DSM 16656 plasmid pKrDSM16656L, complete sequence	130834-130866	5	0.848
NZ_CP008886_3	3.1\|1284636\|33\|NZ_CP008886\|CRISPRCasFinder	1284636-1284668	33	NZ_CP029442	Klebsiella quasipneumoniae strain CAV1947 plasmid pKPC_CAV1947-412, complete sequence	382427-382459	5	0.848
NZ_CP008886_3	3.1\|1284636\|33\|NZ_CP008886\|CRISPRCasFinder	1284636-1284668	33	LR134125	Klebsiella aerogenes strain NCTC10006 genome assembly, plasmid: 5	15997-16029	6	0.818
NZ_CP008886_3	3.1\|1284636\|33\|NZ_CP008886\|CRISPRCasFinder	1284636-1284668	33	NZ_CP043437	Enterobacter sp. LU1 plasmid unnamed	289948-289980	6	0.818
NZ_CP008886_3	3.1\|1284636\|33\|NZ_CP008886\|CRISPRCasFinder	1284636-1284668	33	NZ_CP043437	Enterobacter sp. LU1 plasmid unnamed	368811-368843	6	0.818
NZ_CP008886_2	2.1\|836667\|32\|NZ_CP008886\|CRISPRCasFinder	836667-836698	32	NC_008712	Paenarthrobacter aurescens TC1 plasmid pTC1, complete sequence	220337-220368	7	0.781
NZ_CP008886_2	2.1\|836667\|32\|NZ_CP008886\|CRISPRCasFinder	836667-836698	32	NZ_KP289281	Pseudomonas sp. EGD-AKN5 plasmid unnamed, complete sequence	64660-64691	7	0.781
NZ_CP008886_2	2.1\|836667\|32\|NZ_CP008886\|CRISPRCasFinder	836667-836698	32	NC_004956	Pseudomonas sp. ADP atrazine catabolic plasmid pADP-1, complete sequence	64660-64691	7	0.781
NZ_CP008886_4	4.1\|4114557\|42\|NZ_CP008886\|CRISPRCasFinder	4114557-4114598	42	CP052389	Klebsiella pneumoniae strain C17KP0052 plasmid pC17KP0052-1	144500-144541	7	0.833
NZ_CP008886_4	4.1\|4114557\|42\|NZ_CP008886\|CRISPRCasFinder	4114557-4114598	42	LR134132	Klebsiella aerogenes strain NCTC10006 genome assembly, plasmid: 12	103058-103099	7	0.833
NZ_CP008886_4	4.1\|4114557\|42\|NZ_CP008886\|CRISPRCasFinder	4114557-4114598	42	NZ_CP050835	Klebsiella pneumoniae strain Bckp021 plasmid pBckp021-1, complete sequence	218177-218218	10	0.762
NZ_CP008886_4	4.1\|4114557\|42\|NZ_CP008886\|CRISPRCasFinder	4114557-4114598	42	NZ_CP026186	Klebsiella pneumoniae strain KPNIH49 plasmid pKPN-3967, complete sequence	107067-107108	10	0.762
NZ_CP008886_4	4.1\|4114557\|42\|NZ_CP008886\|CRISPRCasFinder	4114557-4114598	42	NZ_CP031614	Klebsiella pneumoniae strain ZYST1 plasmid pZYST1C1, complete sequence	107285-107326	10	0.762
NZ_CP008886_4	4.1\|4114557\|42\|NZ_CP008886\|CRISPRCasFinder	4114557-4114598	42	NZ_AP014952	Klebsiella oxytoca strain JKo3 plasmid pKO_JKo3_1, complete sequence	102178-102219	10	0.762
NZ_CP008886_4	4.1\|4114557\|42\|NZ_CP008886\|CRISPRCasFinder	4114557-4114598	42	NZ_CP014763	Klebsiella pneumoniae strain KPNIH39 plasmid pKPN-332, complete sequence	233995-234036	10	0.762
NZ_CP008886_4	4.1\|4114557\|42\|NZ_CP008886\|CRISPRCasFinder	4114557-4114598	42	LR134252	Klebsiella aerogenes strain NCTC9997 genome assembly, plasmid: 2	39373-39414	10	0.762
NZ_CP008886_4	4.1\|4114557\|42\|NZ_CP008886\|CRISPRCasFinder	4114557-4114598	42	NZ_CP040862	Klebsiella pneumoniae strain Xen39 plasmid unnamed3, complete sequence	259746-259787	10	0.762
NZ_CP008886_4	4.1\|4114557\|42\|NZ_CP008886\|CRISPRCasFinder	4114557-4114598	42	NZ_CP007734	Klebsiella pneumoniae subsp. pneumoniae KPNIH27 plasmid pKPN-262, complete sequence	189171-189212	10	0.762
NZ_CP008886_4	4.1\|4114557\|42\|NZ_CP008886\|CRISPRCasFinder	4114557-4114598	42	NZ_CP018361	Klebsiella oxytoca strain CAV1752 plasmid pCAV1752-278, complete sequence	88885-88926	10	0.762
NZ_CP008886_4	4.1\|4114557\|42\|NZ_CP008886\|CRISPRCasFinder	4114557-4114598	42	MN661402	Klebsiella quasipneumoniae strain KP18-31 plasmid pKP18-31-IMP,KPC, complete sequence	127642-127683	10	0.762
NZ_CP008886_4	4.1\|4114557\|42\|NZ_CP008886\|CRISPRCasFinder	4114557-4114598	42	LR134122	Klebsiella aerogenes strain NCTC10006 genome assembly, plasmid: 2	272365-272406	10	0.762
NZ_CP008886_4	4.1\|4114557\|42\|NZ_CP008886\|CRISPRCasFinder	4114557-4114598	42	LR134132	Klebsiella aerogenes strain NCTC10006 genome assembly, plasmid: 12	134053-134094	11	0.738
NZ_CP008886_4	4.1\|4114557\|42\|NZ_CP008886\|CRISPRCasFinder	4114557-4114598	42	NZ_CP043437	Enterobacter sp. LU1 plasmid unnamed	362347-362388	11	0.738

1. spacer 3.1|1284636|33|NZ_CP008886|CRISPRCasFinder matches to NZ_KU254579 (Escherichia coli strain YD786 plasmid pYD786-2, complete sequence) position: , mismatch: 2, identity: 0.939

ccccgtagccccggtaagcgcagcgccaccggg	CRISPR spacer
acccgtagccccggtaagcgcagctccaccggg	Protospacer
 *********************** ********

2. spacer 3.1|1284636|33|NZ_CP008886|CRISPRCasFinder matches to LR134125 (Klebsiella aerogenes strain NCTC10006 genome assembly, plasmid: 5) position: , mismatch: 2, identity: 0.939

ccccgtagccccggtaagcgcagcgccaccggg	CRISPR spacer
acccgtagccccggtaagcgaagcgccaccggg	Protospacer
 ******************* ************

3. spacer 3.1|1284636|33|NZ_CP008886|CRISPRCasFinder matches to LR134125 (Klebsiella aerogenes strain NCTC10006 genome assembly, plasmid: 5) position: , mismatch: 3, identity: 0.909

ccccgtagccccggtaagcgcagcgccaccggg	CRISPR spacer
cattgtagccccggtaagcgcagcgccaccggg	Protospacer
* ..*****************************

4. spacer 3.1|1284636|33|NZ_CP008886|CRISPRCasFinder matches to LR134125 (Klebsiella aerogenes strain NCTC10006 genome assembly, plasmid: 5) position: , mismatch: 3, identity: 0.909

ccccgtagccccggtaagcgcagcgccaccggg	CRISPR spacer
atccgtagccccggtaagcgaagcgccaccggg	Protospacer
 .****************** ************

5. spacer 3.1|1284636|33|NZ_CP008886|CRISPRCasFinder matches to LR134125 (Klebsiella aerogenes strain NCTC10006 genome assembly, plasmid: 5) position: , mismatch: 3, identity: 0.909

ccccgtagccccggtaagcgcagcgccaccggg	CRISPR spacer
atccgtagccccggtaagcgaagcgccaccggg	Protospacer
 .****************** ************

6. spacer 3.1|1284636|33|NZ_CP008886|CRISPRCasFinder matches to NZ_CP043437 (Enterobacter sp. LU1 plasmid unnamed) position: , mismatch: 3, identity: 0.909

ccccgtagccccggtaagcgcagcgccaccggg	CRISPR spacer
acccgtaggcccggtaagcgaagcgccaccggg	Protospacer
 ******* *********** ************

7. spacer 3.1|1284636|33|NZ_CP008886|CRISPRCasFinder matches to LR134125 (Klebsiella aerogenes strain NCTC10006 genome assembly, plasmid: 5) position: , mismatch: 4, identity: 0.879

ccccgtagccccggtaagcgcagcgccaccggg	CRISPR spacer
aaacgtagccccagtaagcgcagcgccaccggg	Protospacer
   *********.********************

8. spacer 3.1|1284636|33|NZ_CP008886|CRISPRCasFinder matches to LR134125 (Klebsiella aerogenes strain NCTC10006 genome assembly, plasmid: 5) position: , mismatch: 4, identity: 0.879

ccccgtagccccggtaagcgcagcgccaccggg	CRISPR spacer
taccgtaggcccggtaagcgtagcgccaccggg	Protospacer
. ****** ***********.************

9. spacer 3.1|1284636|33|NZ_CP008886|CRISPRCasFinder matches to NZ_CP043437 (Enterobacter sp. LU1 plasmid unnamed) position: , mismatch: 4, identity: 0.879

ccccgtagccccggtaagcgcagcgccaccggg	CRISPR spacer
gatcgtaggcccggtaagcgcagcgccaccggg	Protospacer
  .***** ************************

10. spacer 3.1|1284636|33|NZ_CP008886|CRISPRCasFinder matches to NZ_CP043437 (Enterobacter sp. LU1 plasmid unnamed) position: , mismatch: 4, identity: 0.879

ccccgtagccccggtaagcgcagcgccaccggg	CRISPR spacer
ttctgtaggcccggtaagcgcagcgccaccggg	Protospacer
..*.**** ************************

11. spacer 3.1|1284636|33|NZ_CP008886|CRISPRCasFinder matches to LR134122 (Klebsiella aerogenes strain NCTC10006 genome assembly, plasmid: 2) position: , mismatch: 4, identity: 0.879

ccccgtagccccggtaagcgcagcgccaccggg	CRISPR spacer
atcggtagccccggtaagcgtagcgccaccggg	Protospacer
 .* ****************.************

12. spacer 3.1|1284636|33|NZ_CP008886|CRISPRCasFinder matches to NZ_CP019203 (Salmonella enterica subsp. enterica serovar Infantis strain CFSAN003307 plasmid pCFSAN003307, complete sequence) position: , mismatch: 4, identity: 0.879

ccccgtagccccggtaagcgcagcgccaccggg	CRISPR spacer
acgtgtaggcccggtaagcgcagcgccaccggg	Protospacer
 * .**** ************************

13. spacer 3.1|1284636|33|NZ_CP008886|CRISPRCasFinder matches to NZ_LN868945 (Salmonella enterica subsp. enterica serovar Senftenberg strain NCTC10384 plasmid 3, complete sequence) position: , mismatch: 4, identity: 0.879

ccccgtagccccggtaagcgcagcgccaccggg	CRISPR spacer
acgtgtaggcccggtaagcgcagcgccaccggg	Protospacer
 * .**** ************************

14. spacer 3.1|1284636|33|NZ_CP008886|CRISPRCasFinder matches to CP045556 (Citrobacter sp. S39 plasmid pS39-1, complete sequence) position: , mismatch: 5, identity: 0.848

ccccgtagccccggtaagcgcagcgccaccggg	CRISPR spacer
ttatgtcgccccggtaagcgcagcgccaccggg	Protospacer
.. .** **************************

15. spacer 3.1|1284636|33|NZ_CP008886|CRISPRCasFinder matches to NZ_CP045203 (Citrobacter sp. NMI7904_11 plasmid pCTEL-2, complete sequence) position: , mismatch: 5, identity: 0.848

ccccgtagccccggtaagcgcagcgccaccggg	CRISPR spacer
ttatgtcgccccggtaagcgcagcgccaccggg	Protospacer
.. .** **************************

16. spacer 3.1|1284636|33|NZ_CP008886|CRISPRCasFinder matches to NZ_CP022152 (Citrobacter freundii strain 705SK3 plasmid p705SK3_1, complete sequence) position: , mismatch: 5, identity: 0.848

ccccgtagccccggtaagcgcagcgccaccggg	CRISPR spacer
ttatgtcgccccggtaagcgcagcgccaccggg	Protospacer
.. .** **************************

17. spacer 3.1|1284636|33|NZ_CP008886|CRISPRCasFinder matches to NZ_CP019987 (Citrobacter werkmanii strain BF-6 plasmid unnamed, complete sequence) position: , mismatch: 5, identity: 0.848

ccccgtagccccggtaagcgcagcgccaccggg	CRISPR spacer
ttatgtcgccccggtaagcgcagcgccaccggg	Protospacer
.. .** **************************

18. spacer 3.1|1284636|33|NZ_CP008886|CRISPRCasFinder matches to NZ_CP030224 (Salmonella enterica strain SA20083039 plasmid pSA20083039.1, complete sequence) position: , mismatch: 5, identity: 0.848

ccccgtagccccggtaagcgcagcgccaccggg	CRISPR spacer
ttatgtcgccccggtaagcgcagcgccaccggg	Protospacer
.. .** **************************

19. spacer 3.1|1284636|33|NZ_CP008886|CRISPRCasFinder matches to NZ_CP026213 (Citrobacter sp. CFNIH10 plasmid pKPC-933d, complete sequence) position: , mismatch: 5, identity: 0.848

ccccgtagccccggtaagcgcagcgccaccggg	CRISPR spacer
ttatgtcgccccggtaagcgcagcgccaccggg	Protospacer
.. .** **************************

20. spacer 3.1|1284636|33|NZ_CP008886|CRISPRCasFinder matches to NZ_AP023206 (Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence) position: , mismatch: 5, identity: 0.848

ccccgtagccccggtaagcgcagcgccaccggg	CRISPR spacer
ttttgtaggcccggtaagcgcagcgccaccggg	Protospacer
....**** ************************

21. spacer 3.1|1284636|33|NZ_CP008886|CRISPRCasFinder matches to NZ_MG387191 (Citrobacter freundii strain 2262 plasmid pTEM-2262, complete sequence) position: , mismatch: 5, identity: 0.848

ccccgtagccccggtaagcgcagcgccaccggg	CRISPR spacer
ttatgtcgccccggtaagcgcagcgccaccggg	Protospacer
.. .** **************************

22. spacer 3.1|1284636|33|NZ_CP008886|CRISPRCasFinder matches to NZ_CP048383 (Citrobacter freundii strain 62 plasmid p6_A, complete sequence) position: , mismatch: 5, identity: 0.848

ccccgtagccccggtaagcgcagcgccaccggg	CRISPR spacer
ttatgtcgccccggtaagcgcagcgccaccggg	Protospacer
.. .** **************************

23. spacer 3.1|1284636|33|NZ_CP008886|CRISPRCasFinder matches to NZ_CP026282 (Klebsiella oxytoca strain KONIH2 plasmid pKOR-e3cb, complete sequence) position: , mismatch: 5, identity: 0.848

ccccgtagccccggtaagcgcagcgccaccggg	CRISPR spacer
ttatgtcgccccggtaagcgcagcgccaccggg	Protospacer
.. .** **************************

24. spacer 3.1|1284636|33|NZ_CP008886|CRISPRCasFinder matches to NZ_CP042535 (Citrobacter freundii strain E51 plasmid pE51_001, complete sequence) position: , mismatch: 5, identity: 0.848

ccccgtagccccggtaagcgcagcgccaccggg	CRISPR spacer
ttatgtcgccccggtaagcgcagcgccaccggg	Protospacer
.. .** **************************

25. spacer 3.1|1284636|33|NZ_CP008886|CRISPRCasFinder matches to NZ_CP007734 (Klebsiella pneumoniae subsp. pneumoniae KPNIH27 plasmid pKPN-262, complete sequence) position: , mismatch: 5, identity: 0.848

ccccgtagccccggtaagcgcagcgccaccggg	CRISPR spacer
ttatgtcgccccggtaagcgcagcgccaccggg	Protospacer
.. .** **************************

26. spacer 3.1|1284636|33|NZ_CP008886|CRISPRCasFinder matches to NZ_CP026058 (Citrobacter freundii strain FDAARGOS_73 plasmid unnamed2, complete sequence) position: , mismatch: 5, identity: 0.848

ccccgtagccccggtaagcgcagcgccaccggg	CRISPR spacer
ttatgtcgccccggtaagcgcagcgccaccggg	Protospacer
.. .** **************************

27. spacer 3.1|1284636|33|NZ_CP008886|CRISPRCasFinder matches to NZ_CP029436 (Klebsiella quasipneumoniae strain CAV2013 plasmid pKPC_CAV2013, complete sequence) position: , mismatch: 5, identity: 0.848

ccccgtagccccggtaagcgcagcgccaccggg	CRISPR spacer
ttatgtcgccccggtaagcgcagcgccaccggg	Protospacer
.. .** **************************

28. spacer 3.1|1284636|33|NZ_CP008886|CRISPRCasFinder matches to NZ_CP029431 (Klebsiella quasipneumoniae strain CAV2018 plasmid pKPC_CAV2018-435, complete sequence) position: , mismatch: 5, identity: 0.848

ccccgtagccccggtaagcgcagcgccaccggg	CRISPR spacer
ttatgtcgccccggtaagcgcagcgccaccggg	Protospacer
.. .** **************************

29. spacer 3.1|1284636|33|NZ_CP008886|CRISPRCasFinder matches to CP022016 (Salmonella enterica subsp. enterica serovar India str. SA20085604 plasmid unnamed1, complete sequence) position: , mismatch: 5, identity: 0.848

ccccgtagccccggtaagcgcagcgccaccggg	CRISPR spacer
ttttgtaggcccggtaagcgcagcgccaccggg	Protospacer
....**** ************************

30. spacer 3.1|1284636|33|NZ_CP008886|CRISPRCasFinder matches to NZ_CP018017 (Kosakonia radicincitans DSM 16656 plasmid pKrDSM16656L, complete sequence) position: , mismatch: 5, identity: 0.848

ccccgtagccccggtaagcgcagcgccaccggg	CRISPR spacer
ttatgtcgccccggtaagcgcagcgccaccggg	Protospacer
.. .** **************************

31. spacer 3.1|1284636|33|NZ_CP008886|CRISPRCasFinder matches to NZ_CP029442 (Klebsiella quasipneumoniae strain CAV1947 plasmid pKPC_CAV1947-412, complete sequence) position: , mismatch: 5, identity: 0.848

ccccgtagccccggtaagcgcagcgccaccggg	CRISPR spacer
ttatgtcgccccggtaagcgcagcgccaccggg	Protospacer
.. .** **************************

32. spacer 3.1|1284636|33|NZ_CP008886|CRISPRCasFinder matches to LR134125 (Klebsiella aerogenes strain NCTC10006 genome assembly, plasmid: 5) position: , mismatch: 6, identity: 0.818

-ccccgtagccccggtaagcgcagcgccaccggg	CRISPR spacer
gttatgtag-cccggtaagcgtagcgccaccggg	Protospacer
 .. .**** ***********.************

33. spacer 3.1|1284636|33|NZ_CP008886|CRISPRCasFinder matches to NZ_CP043437 (Enterobacter sp. LU1 plasmid unnamed) position: , mismatch: 6, identity: 0.818

ccccgtagccccggtaagcgcagcgccaccggg	CRISPR spacer
atgggtagggccggtaagcgcagcgccaccggg	Protospacer
 .  ****  ***********************

34. spacer 3.1|1284636|33|NZ_CP008886|CRISPRCasFinder matches to NZ_CP043437 (Enterobacter sp. LU1 plasmid unnamed) position: , mismatch: 6, identity: 0.818

ccccgtagccccggtaagcgcagcgccaccggg	CRISPR spacer
ttttgtagccccggtaagcgtagcgtcaccggg	Protospacer
....****************.****.*******

35. spacer 2.1|836667|32|NZ_CP008886|CRISPRCasFinder matches to NC_008712 (Paenarthrobacter aurescens TC1 plasmid pTC1, complete sequence) position: , mismatch: 7, identity: 0.781

tcgccgggagcgatttttaacgtcgcccgcga	CRISPR spacer
ccgccgggagcgacttttgacgtcggctccgc	Protospacer
.************.****.****** *. **

36. spacer 2.1|836667|32|NZ_CP008886|CRISPRCasFinder matches to NZ_KP289281 (Pseudomonas sp. EGD-AKN5 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.781

tcgccgggagcgatttttaacgtcgcccgcga	CRISPR spacer
ccgccgggagcgacttttgacgtcggctccgc	Protospacer
.************.****.****** *. **

37. spacer 2.1|836667|32|NZ_CP008886|CRISPRCasFinder matches to NC_004956 (Pseudomonas sp. ADP atrazine catabolic plasmid pADP-1, complete sequence) position: , mismatch: 7, identity: 0.781

tcgccgggagcgatttttaacgtcgcccgcga	CRISPR spacer
ccgccgggagcgacttttgacgtcggctccgc	Protospacer
.************.****.****** *. **

38. spacer 4.1|4114557|42|NZ_CP008886|CRISPRCasFinder matches to CP052389 (Klebsiella pneumoniae strain C17KP0052 plasmid pC17KP0052-1) position: , mismatch: 7, identity: 0.833

cccctcatcccgtaggcccgcgcaagcgcagcgccgccgggt	CRISPR spacer
actcgcgtttcgtaggcccgcgcaagcgcagcgccgccgggc	Protospacer
 *.* *.*..*******************************.

39. spacer 4.1|4114557|42|NZ_CP008886|CRISPRCasFinder matches to LR134132 (Klebsiella aerogenes strain NCTC10006 genome assembly, plasmid: 12) position: , mismatch: 7, identity: 0.833

cccctcatcccgtaggcccgcgcaagcgcagcgccgccgggt	CRISPR spacer
acctcctccccgtaggcccgcgcaagcgtagcgccgccgggc	Protospacer
 **..* .********************.************.

40. spacer 4.1|4114557|42|NZ_CP008886|CRISPRCasFinder matches to NZ_CP050835 (Klebsiella pneumoniae strain Bckp021 plasmid pBckp021-1, complete sequence) position: , mismatch: 10, identity: 0.762

cccctcatcccgtaggcccgcgcaagcgcagcgccgccgggt	CRISPR spacer
cgggatcccccccaggcccgcgcaagcgcagcgccgccgggc	Protospacer
*    . .*** .****************************.

41. spacer 4.1|4114557|42|NZ_CP008886|CRISPRCasFinder matches to NZ_CP026186 (Klebsiella pneumoniae strain KPNIH49 plasmid pKPN-3967, complete sequence) position: , mismatch: 10, identity: 0.762

cccctcatcccgtaggcccgcgcaagcgcagcgccgccgggt	CRISPR spacer
cgggatcccccccaggcccgcgcaagcgcagcgccgccgggc	Protospacer
*    . .*** .****************************.

42. spacer 4.1|4114557|42|NZ_CP008886|CRISPRCasFinder matches to NZ_CP031614 (Klebsiella pneumoniae strain ZYST1 plasmid pZYST1C1, complete sequence) position: , mismatch: 10, identity: 0.762

cccctcatcccgtaggcccgcgcaagcgcagcgccgccgggt	CRISPR spacer
cgggatcccccccaggcccgcgcaagcgcagcgccgccgggc	Protospacer
*    . .*** .****************************.

43. spacer 4.1|4114557|42|NZ_CP008886|CRISPRCasFinder matches to NZ_AP014952 (Klebsiella oxytoca strain JKo3 plasmid pKO_JKo3_1, complete sequence) position: , mismatch: 10, identity: 0.762

cccctcatcccgtaggcccgcgcaagcgcagcgccgccgggt	CRISPR spacer
cgggatcccccccaggcccgcgcaagcgcagcgccgccgggc	Protospacer
*    . .*** .****************************.

44. spacer 4.1|4114557|42|NZ_CP008886|CRISPRCasFinder matches to NZ_CP014763 (Klebsiella pneumoniae strain KPNIH39 plasmid pKPN-332, complete sequence) position: , mismatch: 10, identity: 0.762

cccctcatcccgtaggcccgcgcaagcgcagcgccgccgggt	CRISPR spacer
cgggatcccccccaggcccgcgcaagcgcagcgccgccgggc	Protospacer
*    . .*** .****************************.

45. spacer 4.1|4114557|42|NZ_CP008886|CRISPRCasFinder matches to LR134252 (Klebsiella aerogenes strain NCTC9997 genome assembly, plasmid: 2) position: , mismatch: 10, identity: 0.762

cccctcatcccgtaggcccgcgcaagcgcagcgccgccgggt	CRISPR spacer
cgggatcccccccaggcccgcgcaagcgcagcgccgccgggc	Protospacer
*    . .*** .****************************.

46. spacer 4.1|4114557|42|NZ_CP008886|CRISPRCasFinder matches to NZ_CP040862 (Klebsiella pneumoniae strain Xen39 plasmid unnamed3, complete sequence) position: , mismatch: 10, identity: 0.762

cccctcatcccgtaggcccgcgcaagcgcagcgccgccgggt	CRISPR spacer
cgggatcccccccaggcccgcgcaagcgcagcgccgccgggc	Protospacer
*    . .*** .****************************.

47. spacer 4.1|4114557|42|NZ_CP008886|CRISPRCasFinder matches to NZ_CP007734 (Klebsiella pneumoniae subsp. pneumoniae KPNIH27 plasmid pKPN-262, complete sequence) position: , mismatch: 10, identity: 0.762

cccctcatcccgtaggcccgcgcaagcgcagcgccgccgggt	CRISPR spacer
cgggatcccccccaggcccgcgcaagcgcagcgccgccgggc	Protospacer
*    . .*** .****************************.

48. spacer 4.1|4114557|42|NZ_CP008886|CRISPRCasFinder matches to NZ_CP018361 (Klebsiella oxytoca strain CAV1752 plasmid pCAV1752-278, complete sequence) position: , mismatch: 10, identity: 0.762

cccctcatcccgtaggcccgcgcaagcgcagcgccgccgggt	CRISPR spacer
cgggatcccccccaggcccgcgcaagcgcagcgccgccgggc	Protospacer
*    . .*** .****************************.

49. spacer 4.1|4114557|42|NZ_CP008886|CRISPRCasFinder matches to MN661402 (Klebsiella quasipneumoniae strain KP18-31 plasmid pKP18-31-IMP,KPC, complete sequence) position: , mismatch: 10, identity: 0.762

cccctcatcccgtaggcccgcgcaagcgcagcgccgccgggt	CRISPR spacer
cgggatcccccccaggcccgcgcaagcgcagcgccgccgggc	Protospacer
*    . .*** .****************************.

50. spacer 4.1|4114557|42|NZ_CP008886|CRISPRCasFinder matches to LR134122 (Klebsiella aerogenes strain NCTC10006 genome assembly, plasmid: 2) position: , mismatch: 10, identity: 0.762

cccctcatcccgtaggcccgcgcaagcgcagcgccgccgggt	CRISPR spacer
gcactggatctgtagtcccgtgcaagcgcagcgccgccgggc	Protospacer
 * ** . .*.**** ****.********************.

51. spacer 4.1|4114557|42|NZ_CP008886|CRISPRCasFinder matches to LR134132 (Klebsiella aerogenes strain NCTC10006 genome assembly, plasmid: 12) position: , mismatch: 11, identity: 0.738

cccctcatcccgtaggcccgcgcaagcgcagcgccgccgggt	CRISPR spacer
gcatgtgatctgtaggcccgcgcaagcgtagcgccgccgggc	Protospacer
 * . .. .*.*****************.************.

52. spacer 4.1|4114557|42|NZ_CP008886|CRISPRCasFinder matches to NZ_CP043437 (Enterobacter sp. LU1 plasmid unnamed) position: , mismatch: 11, identity: 0.738

cccctcatcccgtaggcccgcgcaagcgcagcgccgccgggt	CRISPR spacer
gttgttgtatcgtaggcccgtgcaagcgaagcgccgccgggc	Protospacer
 .. *..* .**********.******* ************.

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1694452 : 1757772

Cronobacter_phage(27.78%)

terminase,head,holin,coat,integrase,lysis,tRNA

attL 1689348:1689365|attR 1737444:1737461

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1689348:1689365	attL	NA	NA	NA	NA
WP_032695666.1\|1694452_1695232_+\|tRNA	tRNA uridine 5-oxyacetic acid(34) methyltransferase CmoM	NA	NA	NA	NA
WP_004860096.1\|1695235_1696558_+	chromosome partition protein MukF	NA	NA	NA	NA
WP_004860098.1\|1696538_1697243_+	chromosome partition protein MukE	NA	NA	NA	NA
WP_004860100.1\|1697242_1701691_+	chromosome partition protein MukB	NA	NA	NA	NA
WP_065906105.1\|1701875_1703666_+	L,D-transpeptidase	NA	NA	NA	NA
WP_015584788.1\|1703846_1704398_+	YcbK family protein	NA	NA	NA	NA
WP_015584787.1\|1704411_1705059_+	MBL fold metallo-hydrolase	A0A1X9I5D3	Streptococcus_phage	9.1e-21	29.1
WP_065906107.1\|1705124_1706315_-	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA
WP_004860110.1\|1706498_1707581_-	hypothetical protein	Q1MVN1	Enterobacteria_phage	7.4e-100	53.4
WP_004860113.1\|1708172_1709573_-\|tRNA	asparagine--tRNA ligase	A0A2K9V902	Bandra_megavirus	1.0e-80	36.6
WP_004860115.1\|1709750_1710953_-	nicotinate phosphoribosyltransferase	A0A2L0UZQ6	Agrobacterium_phage	1.2e-42	30.6
WP_065906109.1\|1711212_1712502_-\|integrase	site-specific integrase	A0A286S1S8	Klebsiella_phage	9.0e-169	65.8
WP_015584784.1\|1712544_1712793_-	excisionase family protein	S4TND0	Salmonella_phage	9.5e-27	64.6
WP_065906111.1\|1712806_1713046_-	DUF4222 domain-containing protein	H6WZF9	Escherichia_phage	1.1e-11	50.0
WP_065906113.1\|1713045_1713267_-	TraR/DksA family transcriptional regulator	A0A0K2FI84	Escherichia_phage	3.1e-13	53.6
WP_065906115.1\|1713263_1713455_-	DUF1382 family protein	A0A0P0ZC60	Stx2-converting_phage	8.6e-12	64.4
WP_065906118.1\|1713451_1713796_-	DUF551 domain-containing protein	U5P092	Shigella_phage	2.7e-19	57.3
WP_065906120.1\|1713792_1714014_-	hypothetical protein	NA	NA	NA	NA
WP_065906122.1\|1714010_1714538_-	phage N-6-adenine-methyltransferase	Q9ZWX6	Enterobacteria_phage	4.9e-57	61.6
WP_071934167.1\|1714534_1714693_-	DUF1317 family protein	A0A0N7CHV0	Escherichia_phage	2.3e-10	60.8
WP_065906126.1\|1714963_1715611_-	single-stranded DNA-binding protein	A0A1W6JP21	Morganella_phage	4.3e-63	61.9
WP_004135670.1\|1715762_1715960_-	hypothetical protein	NA	NA	NA	NA
WP_065906132.1\|1715967_1716972_-	hypothetical protein	A0A077KCC0	Edwardsiella_phage	6.8e-39	76.8
WP_048757281.1\|1717059_1717254_-	hypothetical protein	NA	NA	NA	NA
WP_065906134.1\|1717682_1717886_+	hypothetical protein	A0A192Y6Q5	Salmonella_phage	2.0e-19	71.6
WP_065906136.1\|1717922_1718966_-	ParA family protein	H2BD62	Pseudomonas_phage	6.6e-13	27.0
WP_004201113.1\|1719217_1719916_-	helix-turn-helix transcriptional regulator	Q76H56	Enterobacteria_phage	3.7e-108	84.1
WP_049266891.1\|1720027_1720255_+	helix-turn-helix domain-containing protein	Q76H55	Enterobacteria_phage	1.4e-24	77.1
WP_049266890.1\|1720295_1720517_+	bacteriophage CII family protein	NA	NA	NA	NA
WP_065906138.1\|1720602_1721502_+	replication protein	K7PGT1	Enterobacteria_phage	7.9e-63	47.9
WP_065906139.1\|1721498_1722347_+	ATP-binding protein	K7PLU3	Enterobacteria_phage	6.9e-93	59.9
WP_065906141.1\|1722343_1722646_+	hypothetical protein	NA	NA	NA	NA
WP_065906145.1\|1723019_1723502_+	class I SAM-dependent methyltransferase	H9C170	Pectobacterium_phage	5.5e-71	79.4
WP_065906150.1\|1723498_1724149_+	hypothetical protein	A0A2R2Z312	Escherichia_phage	5.9e-36	46.8
WP_065906151.1\|1724426_1724966_+	hypothetical protein	Q6UAT8	Klebsiella_phage	2.4e-14	78.6
WP_065906153.1\|1725435_1725624_+	hypothetical protein	R9TNE4	Aeromonas_phage	2.1e-18	74.6
WP_065906155.1\|1725616_1725922_+	hypothetical protein	NA	NA	NA	NA
WP_065906157.1\|1726000_1726258_+	DNA polymerase III subunit theta	G8C7V1	Escherichia_phage	1.7e-26	72.7
WP_065906158.1\|1726273_1726633_+	hypothetical protein	NA	NA	NA	NA
WP_071934169.1\|1726819_1727287_+	recombination protein NinB	Q8VNP6	Enterobacteria_phage	6.4e-32	45.8
WP_071934171.1\|1727267_1727438_+	NinE family protein	K7P7K0	Enterobacteria_phage	9.4e-10	63.6
WP_065906164.1\|1727430_1727721_+	DUF1364 domain-containing protein	K7PGZ6	Enterobacteria_phage	1.4e-45	88.5
WP_065906165.1\|1727717_1728080_+	RusA family crossover junction endodeoxyribonuclease	K7PM48	Enterobacteria_phage	3.1e-50	78.3
WP_155763444.1\|1728076_1728217_+	YlcG family protein	NA	NA	NA	NA
WP_065907353.1\|1728216_1728906_+	antiterminator	I6PDF8	Cronobacter_phage	2.3e-62	54.5
WP_044346992.1\|1730016_1730286_+\|holin	holin	K7P6H9	Enterobacteria_phage	4.2e-36	82.6
WP_065907355.1\|1730263_1730830_+	lysozyme	K7P7Q3	Enterobacteria_phage	3.4e-88	83.5
WP_065906168.1\|1730829_1731291_+\|lysis	lysis protein	M9NYX9	Enterobacteria_phage	2.2e-40	62.1
WP_155763445.1\|1731802_1732108_+	hypothetical protein	NA	NA	NA	NA
WP_065906172.1\|1732408_1732600_+	hypothetical protein	NA	NA	NA	NA
WP_065906178.1\|1732698_1733334_+	hypothetical protein	I6S676	Salmonella_phage	1.0e-101	81.1
WP_065906180.1\|1733365_1733815_+	DUF2280 domain-containing protein	I6S1P9	Salmonella_phage	6.7e-47	73.6
WP_065906182.1\|1733824_1735300_+\|terminase	terminase	A0A1W6JNY3	Morganella_phage	4.2e-231	77.8
WP_065906184.1\|1735311_1736733_+	DUF1073 domain-containing protein	F1C5D7	Cronobacter_phage	1.9e-183	69.8
WP_065906186.1\|1736695_1737697_+\|head	phage head morphogenesis protein	F1C5D8	Cronobacter_phage	1.8e-116	69.8
1737444:1737461	attR	NA	NA	NA	NA
WP_065906188.1\|1737739_1738255_+	hypothetical protein	NA	NA	NA	NA
WP_065906190.1\|1738323_1739709_+	DUF2213 domain-containing protein	F1C5D9	Cronobacter_phage	1.6e-163	63.4
WP_065906192.1\|1739712_1740153_+	hypothetical protein	F1C5E0	Cronobacter_phage	2.3e-44	65.8
WP_065906195.1\|1740164_1741262_+\|coat	phage coat protein	F1C5E1	Cronobacter_phage	1.3e-152	74.7
WP_065906197.1\|1741271_1741574_+	hypothetical protein	NA	NA	NA	NA
WP_065906199.1\|1741576_1741960_+	hypothetical protein	F1C5E2	Cronobacter_phage	8.8e-48	74.8
WP_065906203.1\|1742132_1742495_+	hypothetical protein	G0ZNE2	Cronobacter_phage	1.4e-26	50.8
WP_065906205.1\|1742497_1742866_+	hypothetical protein	F1C5E3	Cronobacter_phage	3.2e-47	80.3
WP_065906207.1\|1742862_1743246_+	hypothetical protein	NA	NA	NA	NA
WP_065906209.1\|1743304_1744069_+	immunoglobulin domain-containing protein	G0ZNE6	Cronobacter_phage	7.4e-38	43.8
WP_065906213.1\|1744129_1744843_+	hypothetical protein	G0ZNE7	Cronobacter_phage	5.6e-64	54.6
WP_015584733.1\|1745058_1745589_+	KilA-N domain-containing protein	A0A2H4FQV0	Salmonella_phage	1.3e-86	89.7
WP_071934175.1\|1746177_1746582_+	hypothetical protein	A0A286S1N7	Klebsiella_phage	3.8e-17	43.0
WP_065906216.1\|1746638_1749947_+	tape measure protein	R9TMK1	Aeromonas_phage	2.4e-205	53.4
WP_015584729.1\|1750008_1750251_+	DUF4282 domain-containing protein	NA	NA	NA	NA
WP_049264444.1\|1750289_1750469_+	Rrf2 family transcriptional regulator	NA	NA	NA	NA
WP_071887212.1\|1750448_1750712_-	DUF1883 domain-containing protein	NA	NA	NA	NA
WP_155763460.1\|1750882_1751302_+	hypothetical protein	F1C5F0	Cronobacter_phage	3.8e-36	55.3
WP_065906220.1\|1751301_1751772_+	hypothetical protein	F1C5F1	Cronobacter_phage	4.7e-27	37.9
WP_065906221.1\|1751768_1752164_+	hypothetical protein	F1C5F2	Cronobacter_phage	9.1e-40	57.9
WP_065906223.1\|1752150_1754634_+	MoaD/ThiS family protein	F1C5A7	Cronobacter_phage	3.6e-198	45.5
WP_065906225.1\|1756529_1757375_+	hypothetical protein	NA	NA	NA	NA
WP_015584719.1\|1757481_1757772_+	hypothetical protein	K7PGV5	Enterobacterial_phage	8.5e-11	43.5

DBSCAN-SWA_2

2681697 : 2694867

Escherichia_phage(28.57%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_065906562.1\|2681697_2684805_+	beta-galactosidase	L0N6M2	Herpes_simplex_virus	0.0e+00	59.6
WP_004862386.1\|2684990_2686256_+	MFS transporter	NA	NA	NA	NA
WP_032717509.1\|2686298_2687399_-	AAA family ATPase	A0A077SLJ9	Escherichia_phage	8.7e-173	81.9
WP_032687689.1\|2687500_2687761_-	hypothetical protein	A0A077SK33	Escherichia_phage	7.4e-30	83.1
WP_004862397.1\|2688056_2688932_+	class A broad-spectrum beta-lactamase ORN-1	Q1MVP3	Enterobacteria_phage	4.1e-109	71.1
WP_004862401.1\|2689041_2689272_-	hypothetical protein	NA	NA	NA	NA
WP_004862406.1\|2689657_2689900_+	DinI family protein	Q6UAW0	Klebsiella_phage	8.1e-31	79.7
WP_065906563.1\|2690057_2692103_-	peptidyl-dipeptidase Dcp	A0A1V0SIU1	Klosneuvirus	7.9e-18	21.3
WP_065906564.1\|2692089_2692323_-	hypothetical protein	NA	NA	NA	NA
WP_004862414.1\|2692849_2693599_+	bifunctional NADP-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase YdfG	NA	NA	NA	NA
WP_004862416.1\|2693691_2694378_+	GntR family transcriptional regulator	NA	NA	NA	NA
WP_004862418.1\|2694435_2694867_-	universal stress protein G	A0A1W6JNV4	Morganella_phage	3.9e-20	39.3

DBSCAN-SWA_3

2881799 : 2892948

uncultured_Caudovirales_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_081312996.1\|2881799_2883947_+	formate dehydrogenase subunit alpha	A0A077SK27	Escherichia_phage	1.8e-28	23.5
WP_004862868.1\|2884098_2884557_-	(2Fe-2S)-binding protein	A0A0P0IVM8	Acinetobacter_phage	7.4e-17	36.9
WP_044349866.1\|2884602_2887818_-	molybdopterin-dependent oxidoreductase	A0A0P0IVM8	Acinetobacter_phage	2.5e-10	25.6
WP_004862872.1\|2888166_2888937_-	DeoR/GlpR transcriptional regulator	A0A077SK06	Escherichia_phage	1.4e-15	29.1
WP_015584171.1\|2889027_2889411_+	glyoxalase I, nickel isomerase	NA	NA	NA	NA
WP_065906626.1\|2889446_2890088_+	CatA-like O-acetyltransferase	NA	NA	NA	NA
WP_044349868.1\|2890067_2890493_-	arsenate reductase (glutaredoxin)	A0A2H4J8T1	uncultured_Caudovirales_phage	3.1e-41	62.6
WP_015584168.1\|2890502_2891795_-	arsenic transporter	A0A2H4J144	uncultured_Caudovirales_phage	1.8e-161	69.6
WP_004862888.1\|2891840_2892161_-	metalloregulator ArsR/SmtB family transcription factor	A0A2H4J145	uncultured_Caudovirales_phage	3.8e-20	47.4
WP_032717686.1\|2892249_2892948_+	arsenical resistance protein ArsH	A0A2H4J5V6	uncultured_Caudovirales_phage	1.1e-83	65.1

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP008886

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection